2026-03-05T06:56:04,152 Created temporary directory: /tmp/pip-ephem-wheel-cache-cwnk0kbg
2026-03-05T06:56:04,154 Created temporary directory: /tmp/pip-build-tracker-qm1_rrj8
2026-03-05T06:56:04,155 Initialized build tracking at /tmp/pip-build-tracker-qm1_rrj8
2026-03-05T06:56:04,155 Created build tracker: /tmp/pip-build-tracker-qm1_rrj8
2026-03-05T06:56:04,156 Entered build tracker: /tmp/pip-build-tracker-qm1_rrj8
2026-03-05T06:56:04,157 Created temporary directory: /tmp/pip-wheel-tifpkrf1
2026-03-05T06:56:04,160 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-05T06:56:04,162 Created temporary directory: /tmp/pip-ephem-wheel-cache-una9q05v
2026-03-05T06:56:04,184 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-05T06:56:04,187 2 location(s) to search for versions of symbac:
2026-03-05T06:56:04,187 * https://pypi.org/simple/symbac/
2026-03-05T06:56:04,187 * https://www.piwheels.org/simple/symbac/
2026-03-05T06:56:04,188 Fetching project page and analyzing links: https://pypi.org/simple/symbac/
2026-03-05T06:56:04,189 Getting page https://pypi.org/simple/symbac/
2026-03-05T06:56:04,190 Found index url https://pypi.org/simple
2026-03-05T06:56:04,469 Fetched page https://pypi.org/simple/symbac/ as application/vnd.pypi.simple.v1+json
2026-03-05T06:56:04,474   Found link https://files.pythonhosted.org/packages/ed/dd/b576cd6f2c99801d3fa3b106fe81dd8435f0379ba6752dcdb4a9bef2a052/SyMBac-0.1.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.0
2026-03-05T06:56:04,475   Found link https://files.pythonhosted.org/packages/5c/9a/0711b93410576410a0038fe2a9fd277d1684f4635990c786edeb14ea1742/SyMBac-0.1.2.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.2
2026-03-05T06:56:04,475   Found link https://files.pythonhosted.org/packages/54/53/4841d1f1430b3d1c92d29477a8b6004d677da252db20e85c8948b42b3616/SyMBac-0.1.3.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.3
2026-03-05T06:56:04,476   Found link https://files.pythonhosted.org/packages/31/89/f1b1f95a6e9500c76926046f44d1ff23760b1512b4b87f22645620627ee2/SyMBac-0.1.4.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.4
2026-03-05T06:56:04,477   Found link https://files.pythonhosted.org/packages/49/a8/8011f4be0ab8ccec726988fcbe200462d10329894037208db1293b3bf4b5/SyMBac-0.1.5.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.5
2026-03-05T06:56:04,477   Found link https://files.pythonhosted.org/packages/b0/0c/0b59c25952bf7e19bcd157d74814c0009f5876d51e0c0f473e4d226bf636/SyMBac-0.1.6.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.6
2026-03-05T06:56:04,478   Found link https://files.pythonhosted.org/packages/77/5a/20d69aeeec53a2bf716275a084e3a9e6dd38cec13ce54132ceaa0895ce8d/SyMBac-0.1.8.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.8
2026-03-05T06:56:04,479   Found link https://files.pythonhosted.org/packages/d6/1c/452fb5556bd679036ab50da899ffb76c79ec2608f89f70530a66fb691407/SyMBac-0.1.9.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.9
2026-03-05T06:56:04,480   Found link https://files.pythonhosted.org/packages/56/05/0aa737090207a5ffd05c5a67757570a2dc3666a7aa47dec0d229ea4ed93c/SyMBac-0.1.10.tar.gz (from https://pypi.org/simple/symbac/), version: 0.1.10
2026-03-05T06:56:04,480   Found link https://files.pythonhosted.org/packages/35/c9/0b158ee65ab06486d6490484e82c55bc0e884711d8e7a805591c798e99c7/SyMBac-0.2.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.2.0
2026-03-05T06:56:04,481   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/9f/74/998bf98b305bc9bd9c2cdc9014bd5925b2f071050e3f98ffd2ae8f5ace33/SyMBac-0.3.0-py3-none-any.whl (from https://pypi.org/simple/symbac/)
2026-03-05T06:56:04,481   Found link https://files.pythonhosted.org/packages/34/cd/c836dd51ea484cfc79c4120cfbff2df25a81841d01eca9aceaa601c29703/SyMBac-0.3.0.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.0
2026-03-05T06:56:04,482   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/6f/43/8e15dec40cc95179247006897d8388f2848159751b1a6888c5314aeaf9bf/SyMBac-0.3.1-py3-none-any.whl (from https://pypi.org/simple/symbac/)
2026-03-05T06:56:04,483   Found link https://files.pythonhosted.org/packages/07/f4/f598ad8aaac1f09d3c7f22c39d1a13b7631f84bc86cabbb6283ada7be8f9/SyMBac-0.3.1.tar.gz (from https://pypi.org/simple/symbac/), version: 0.3.1
2026-03-05T06:56:04,483   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/94/02/e5039f315ddd31f97fb55b164ed464fe00d51ac0dd8b2bf4404e3ee9227c/SyMBac-0.4.0-py3-none-any.whl (from https://pypi.org/simple/symbac/)
2026-03-05T06:56:04,484   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/05/6f/ad6d77721bd0e4b5925797346c76752439580211901317029df912c20e72/symbac-0.5.0-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9)
2026-03-05T06:56:04,485   Found link https://files.pythonhosted.org/packages/94/d1/01bff29abd84411138f73da849342808a9e236b0f852c9306b006c14f6eb/symbac-0.5.0.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.0
2026-03-05T06:56:04,485   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/1b/d8/bc1b5300e8c1153f1723818f9816e210ea9060c438d8a6294fdccf379e2e/symbac-0.5.1-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9)
2026-03-05T06:56:04,486   Found link https://files.pythonhosted.org/packages/0c/31/5df2e10e6324626508d56c9bc17b77ee2b11486b09ff2050f8778bfcdd94/symbac-0.5.1.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.1
2026-03-05T06:56:04,487   Skipping link: No binaries permitted for symbac: https://files.pythonhosted.org/packages/74/8f/1d2c163ab4e7c9fb1032256124813081356aad67889694253e513741f63c/symbac-0.5.2-py3-none-any.whl (from https://pypi.org/simple/symbac/) (requires-python:>=3.9)
2026-03-05T06:56:04,488   Found link https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz (from https://pypi.org/simple/symbac/) (requires-python:>=3.9), version: 0.5.2
2026-03-05T06:56:04,489 Fetching project page and analyzing links: https://www.piwheels.org/simple/symbac/
2026-03-05T06:56:04,489 Getting page https://www.piwheels.org/simple/symbac/
2026-03-05T06:56:04,490 Found index url https://www.piwheels.org/simple
2026-03-05T06:56:04,647 Fetched page https://www.piwheels.org/simple/symbac/ as text/html
2026-03-05T06:56:04,652   Skipping link: No binaries permitted for symbac: https://www.piwheels.org/simple/symbac/symbac-0.5.1-py3-none-any.whl#sha256=8866e3b4ed933be82b49e3a8cc06955ab3acb8deb4c3cc528648b0ceb5633b78 (from https://www.piwheels.org/simple/symbac/) (requires-python:>=3.9)
2026-03-05T06:56:04,652   Skipping link: No binaries permitted for symbac: https://www.piwheels.org/simple/symbac/symbac-0.5.0-py3-none-any.whl#sha256=f07020a7cf1a7b81405297683555f605a1c9580df6a53e5648e4448527b4009d (from https://www.piwheels.org/simple/symbac/) (requires-python:>=3.9)
2026-03-05T06:56:04,653   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.1-py3-none-any.whl#sha256=19276525fe41697178ee31ce68b95d317d5db474fc17214f02e1c6975fa2814a (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,654   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.3.0-py3-none-any.whl#sha256=58c7485f4d67c4598368ef3b026e7b795e13f6bdd9779790ab56244a5177165c (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,654   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.2.0-py3-none-any.whl#sha256=7601c6e9bc0e886acd67b9214cea27567e81cb4e838d87c39f8b12665d6ccd40 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,655   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.10-py3-none-any.whl#sha256=825099cef2ae3ab888dcf946c8f8a20a0e3046a96f0e3e50d39f63e520b4415e (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,655   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.9-py3-none-any.whl#sha256=16af52ee8ae2b81cdc26bd022400026b98dc2351444d322360a7ece41a43cf19 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,656   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.8-py3-none-any.whl#sha256=702ce3f20913ed66b12089ce78a7e0c7355e41652dc54693987269121cbe93ce (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,656   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.6-py3-none-any.whl#sha256=6407316b6941da22527d98ca29e4d43ebd5afdd33e42b18c95ba044f9a0060e7 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,657   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.5-py3-none-any.whl#sha256=6d3211592ee08162914b4659ff8ef58779ba29c56494cdb53829ddef46f112ef (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,657   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.4-py3-none-any.whl#sha256=06b114e2d6fe6ddf9af868bdfcbabd5e98398a70e4ea2bb780a6d756d8b38488 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,658   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.3-py3-none-any.whl#sha256=a8d211d6a06ee57e25dc9a2dadda07ef4f40359d80cbbc67c776cbe1f848cb53 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,658   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.2-py3-none-any.whl#sha256=dcdb4715506bd878560597bf4a9ac87730be567a4102cf484101fad7bf31fd57 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,659   Skipping link: No binaries permitted for symbac: https://archive1.piwheels.org/simple/symbac/SyMBac-0.1.0-py3-none-any.whl#sha256=8737c80a6cb3eddcd955a1bf4f5c7ee243dbb1974bc5002d167081bd69e7c482 (from https://www.piwheels.org/simple/symbac/)
2026-03-05T06:56:04,659 Skipping link: not a file: https://www.piwheels.org/simple/symbac/
2026-03-05T06:56:04,660 Skipping link: not a file: https://pypi.org/simple/symbac/
2026-03-05T06:56:04,683 Given no hashes to check 1 links for project 'symbac': discarding no candidates
2026-03-05T06:56:04,702 Collecting symbac==0.5.2
2026-03-05T06:56:04,705   Created temporary directory: /tmp/pip-unpack-ep8ammwi
2026-03-05T06:56:04,919   Downloading symbac-0.5.2.tar.gz (206 kB)
2026-03-05T06:56:05,163   Added symbac==0.5.2 from https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz to build tracker '/tmp/pip-build-tracker-qm1_rrj8'
2026-03-05T06:56:05,168   Created temporary directory: /tmp/pip-build-env-d80hi236
2026-03-05T06:56:05,172   Installing build dependencies: started
2026-03-05T06:56:05,174   Running command pip subprocess to install build dependencies
2026-03-05T06:56:05,205   Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/cntimer.pth:

2026-03-05T06:56:05,244     Traceback (most recent call last):
2026-03-05T06:56:05,245       File "<frozen site>", line 192, in addpackage
2026-03-05T06:56:05,245       File "<string>", line 1, in <module>
2026-03-05T06:56:05,246     ModuleNotFoundError: No module named 'cntimer'

2026-03-05T06:56:05,247   Remainder of file ignored
2026-03-05T06:56:06,663   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-03-05T06:56:07,280   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-05T06:56:07,305   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-05T06:56:09,019   Collecting setuptools>=64
2026-03-05T06:56:09,096     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.0-py3-none-any.whl (1.0 MB)
2026-03-05T06:56:12,098   Installing collected packages: setuptools
2026-03-05T06:56:15,137   Successfully installed setuptools-82.0.0
2026-03-05T06:56:15,409   Installing build dependencies: finished with status 'done'
2026-03-05T06:56:15,416   Getting requirements to build wheel: started
2026-03-05T06:56:15,417   Running command Getting requirements to build wheel
2026-03-05T06:56:16,124   running egg_info
2026-03-05T06:56:16,130   writing SyMBac.egg-info/PKG-INFO
2026-03-05T06:56:16,136   writing dependency_links to SyMBac.egg-info/dependency_links.txt
2026-03-05T06:56:16,139   writing requirements to SyMBac.egg-info/requires.txt
2026-03-05T06:56:16,140   writing top-level names to SyMBac.egg-info/top_level.txt
2026-03-05T06:56:16,168   reading manifest file 'SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:16,173   adding license file 'LICENSE'
2026-03-05T06:56:16,178   writing manifest file 'SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:16,275   Getting requirements to build wheel: finished with status 'done'
2026-03-05T06:56:16,279   Created temporary directory: /tmp/pip-modern-metadata-vqi_5vhq
2026-03-05T06:56:16,282   Preparing metadata (pyproject.toml): started
2026-03-05T06:56:16,283   Running command Preparing metadata (pyproject.toml)
2026-03-05T06:56:17,159   running dist_info
2026-03-05T06:56:17,170   creating /tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info
2026-03-05T06:56:17,170   writing /tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/PKG-INFO
2026-03-05T06:56:17,177   writing dependency_links to /tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/dependency_links.txt
2026-03-05T06:56:17,180   writing requirements to /tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/requires.txt
2026-03-05T06:56:17,181   writing top-level names to /tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/top_level.txt
2026-03-05T06:56:17,182   writing manifest file '/tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:17,206   reading manifest file '/tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:17,208   adding license file 'LICENSE'
2026-03-05T06:56:17,212   writing manifest file '/tmp/pip-modern-metadata-vqi_5vhq/SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:17,213   creating '/tmp/pip-modern-metadata-vqi_5vhq/symbac-0.5.2.dist-info'
2026-03-05T06:56:17,337   Preparing metadata (pyproject.toml): finished with status 'done'
2026-03-05T06:56:17,342   Source in /tmp/pip-wheel-tifpkrf1/symbac_ba9e4b9bfa2944b4aaa701738b1156d5 has version 0.5.2, which satisfies requirement symbac==0.5.2 from https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz
2026-03-05T06:56:17,343   Removed symbac==0.5.2 from https://files.pythonhosted.org/packages/c1/48/df82b3f3c4bc187147eba79c83392d3c79a40efd54ba81f6e8d8b9ea8c35/symbac-0.5.2.tar.gz from build tracker '/tmp/pip-build-tracker-qm1_rrj8'
2026-03-05T06:56:17,350 Created temporary directory: /tmp/pip-unpack-ganr_302
2026-03-05T06:56:17,350 Building wheels for collected packages: symbac
2026-03-05T06:56:17,355   Created temporary directory: /tmp/pip-wheel-vbyxb821
2026-03-05T06:56:17,355   Destination directory: /tmp/pip-wheel-vbyxb821
2026-03-05T06:56:17,358   Building wheel for symbac (pyproject.toml): started
2026-03-05T06:56:17,359   Running command Building wheel for symbac (pyproject.toml)
2026-03-05T06:56:17,990   running bdist_wheel
2026-03-05T06:56:18,008   running build
2026-03-05T06:56:18,009   running build_py
2026-03-05T06:56:18,015   creating build/lib/SyMBac
2026-03-05T06:56:18,018   copying SyMBac/colony_simulation.py -> build/lib/SyMBac
2026-03-05T06:56:18,022   copying SyMBac/trench_geometry.py -> build/lib/SyMBac
2026-03-05T06:56:18,024   copying SyMBac/cell_geometry.py -> build/lib/SyMBac
2026-03-05T06:56:18,026   copying SyMBac/PSF.py -> build/lib/SyMBac
2026-03-05T06:56:18,028   copying SyMBac/simulation.py -> build/lib/SyMBac
2026-03-05T06:56:18,031   copying SyMBac/misc.py -> build/lib/SyMBac
2026-03-05T06:56:18,033   copying SyMBac/auto_optimise.py -> build/lib/SyMBac
2026-03-05T06:56:18,036   copying SyMBac/__init__.py -> build/lib/SyMBac
2026-03-05T06:56:18,037   copying SyMBac/renderer.py -> build/lib/SyMBac
2026-03-05T06:56:18,041   copying SyMBac/cell_snapshot.py -> build/lib/SyMBac
2026-03-05T06:56:18,043   copying SyMBac/metrics.py -> build/lib/SyMBac
2026-03-05T06:56:18,045   copying SyMBac/cell_simulation.py -> build/lib/SyMBac
2026-03-05T06:56:18,047   copying SyMBac/colony_renderer.py -> build/lib/SyMBac
2026-03-05T06:56:18,050   copying SyMBac/cell.py -> build/lib/SyMBac
2026-03-05T06:56:18,052   copying SyMBac/pySHINE.py -> build/lib/SyMBac
2026-03-05T06:56:18,054   copying SyMBac/lineage.py -> build/lib/SyMBac
2026-03-05T06:56:18,056   copying SyMBac/drawing.py -> build/lib/SyMBac
2026-03-05T06:56:18,058   copying SyMBac/_deprecation.py -> build/lib/SyMBac
2026-03-05T06:56:18,061   creating build/lib/SyMBac/external
2026-03-05T06:56:18,062   copying SyMBac/external/__init__.py -> build/lib/SyMBac/external
2026-03-05T06:56:18,065   creating build/lib/SyMBac/sample_images
2026-03-05T06:56:18,066   copying SyMBac/sample_images/__init__.py -> build/lib/SyMBac/sample_images
2026-03-05T06:56:18,068   creating build/lib/SyMBac/deep_learning
2026-03-05T06:56:18,070   copying SyMBac/deep_learning/tensorflow_augmentations.py -> build/lib/SyMBac/deep_learning
2026-03-05T06:56:18,073   copying SyMBac/deep_learning/__init__.py -> build/lib/SyMBac/deep_learning
2026-03-05T06:56:18,075   copying SyMBac/deep_learning/loss.py -> build/lib/SyMBac/deep_learning
2026-03-05T06:56:18,077   copying SyMBac/deep_learning/model_blocks.py -> build/lib/SyMBac/deep_learning
2026-03-05T06:56:18,081   creating build/lib/SyMBac/physics
2026-03-05T06:56:18,082   copying SyMBac/physics/joints.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,084   copying SyMBac/physics/__init__.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,086   copying SyMBac/physics/growth_manager.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,089   copying SyMBac/physics/config.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,092   copying SyMBac/physics/simcell.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,095   copying SyMBac/physics/simulator.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,098   copying SyMBac/physics/microfluidic_geometry.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,101   copying SyMBac/physics/division_manager.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,104   copying SyMBac/physics/colony.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,106   copying SyMBac/physics/physics_representation.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,109   copying SyMBac/physics/segments.py -> build/lib/SyMBac/physics
2026-03-05T06:56:18,112   creating build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,113   copying SyMBac/external/DeLTA/model.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,115   copying SyMBac/external/DeLTA/data.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,118   copying SyMBac/external/DeLTA/bioformats2sequence.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,120   copying SyMBac/external/DeLTA/__init__.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,122   copying SyMBac/external/DeLTA/pipeline.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,125   copying SyMBac/external/DeLTA/train_seg_chambers.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,127   copying SyMBac/external/DeLTA/config.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,128   copying SyMBac/external/DeLTA/train_seg.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,130   copying SyMBac/external/DeLTA/segmentation_chambers.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,132   copying SyMBac/external/DeLTA/segmentation.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,134   copying SyMBac/external/DeLTA/tracking.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,136   copying SyMBac/external/DeLTA/utilities.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,140   copying SyMBac/external/DeLTA/train_track.py -> build/lib/SyMBac/external/DeLTA
2026-03-05T06:56:18,142   running egg_info
2026-03-05T06:56:18,152   writing SyMBac.egg-info/PKG-INFO
2026-03-05T06:56:18,158   writing dependency_links to SyMBac.egg-info/dependency_links.txt
2026-03-05T06:56:18,161   writing requirements to SyMBac.egg-info/requires.txt
2026-03-05T06:56:18,162   writing top-level names to SyMBac.egg-info/top_level.txt
2026-03-05T06:56:18,178   reading manifest file 'SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:18,184   adding license file 'LICENSE'
2026-03-05T06:56:18,188   writing manifest file 'SyMBac.egg-info/SOURCES.txt'
2026-03-05T06:56:18,195   copying SyMBac/sample_images/sample_DeLTA.tiff -> build/lib/SyMBac/sample_images
2026-03-05T06:56:18,198   copying SyMBac/sample_images/sample_100x.tiff -> build/lib/SyMBac/sample_images
2026-03-05T06:56:18,202   copying SyMBac/sample_images/sample_100x_stationary.tiff -> build/lib/SyMBac/sample_images
2026-03-05T06:56:18,218   installing to build/bdist.linux-armv7l/wheel
2026-03-05T06:56:18,219   running install
2026-03-05T06:56:18,241   running install_lib
2026-03-05T06:56:18,247   creating build/bdist.linux-armv7l/wheel
2026-03-05T06:56:18,249   creating build/bdist.linux-armv7l/wheel/SyMBac
2026-03-05T06:56:18,251   copying build/lib/SyMBac/colony_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,253   copying build/lib/SyMBac/trench_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,256   creating build/bdist.linux-armv7l/wheel/SyMBac/external
2026-03-05T06:56:18,257   copying build/lib/SyMBac/external/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external
2026-03-05T06:56:18,259   creating build/bdist.linux-armv7l/wheel/SyMBac/external/DeLTA
2026-03-05T06:56:18,260   copying build/lib/SyMBac/external/DeLTA/model.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,264   copying build/lib/SyMBac/external/DeLTA/data.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,267   copying build/lib/SyMBac/external/DeLTA/bioformats2sequence.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,270   copying build/lib/SyMBac/external/DeLTA/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,272   copying build/lib/SyMBac/external/DeLTA/pipeline.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,275   copying build/lib/SyMBac/external/DeLTA/train_seg_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,278   copying build/lib/SyMBac/external/DeLTA/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,280   copying build/lib/SyMBac/external/DeLTA/train_seg.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,282   copying build/lib/SyMBac/external/DeLTA/segmentation_chambers.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,285   copying build/lib/SyMBac/external/DeLTA/segmentation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,287   copying build/lib/SyMBac/external/DeLTA/tracking.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,289   copying build/lib/SyMBac/external/DeLTA/utilities.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,295   copying build/lib/SyMBac/external/DeLTA/train_track.py -> build/bdist.linux-armv7l/wheel/./SyMBac/external/DeLTA
2026-03-05T06:56:18,299   copying build/lib/SyMBac/cell_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,303   copying build/lib/SyMBac/PSF.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,306   copying build/lib/SyMBac/simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,309   copying build/lib/SyMBac/misc.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,311   copying build/lib/SyMBac/auto_optimise.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,313   copying build/lib/SyMBac/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,315   copying build/lib/SyMBac/renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,318   copying build/lib/SyMBac/cell_snapshot.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,320   copying build/lib/SyMBac/metrics.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,324   creating build/bdist.linux-armv7l/wheel/SyMBac/sample_images
2026-03-05T06:56:18,325   copying build/lib/SyMBac/sample_images/sample_DeLTA.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images
2026-03-05T06:56:18,328   copying build/lib/SyMBac/sample_images/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images
2026-03-05T06:56:18,330   copying build/lib/SyMBac/sample_images/sample_100x.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images
2026-03-05T06:56:18,334   copying build/lib/SyMBac/sample_images/sample_100x_stationary.tiff -> build/bdist.linux-armv7l/wheel/./SyMBac/sample_images
2026-03-05T06:56:18,338   copying build/lib/SyMBac/cell_simulation.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,341   creating build/bdist.linux-armv7l/wheel/SyMBac/deep_learning
2026-03-05T06:56:18,343   copying build/lib/SyMBac/deep_learning/tensorflow_augmentations.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning
2026-03-05T06:56:18,346   copying build/lib/SyMBac/deep_learning/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning
2026-03-05T06:56:18,348   copying build/lib/SyMBac/deep_learning/loss.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning
2026-03-05T06:56:18,351   copying build/lib/SyMBac/deep_learning/model_blocks.py -> build/bdist.linux-armv7l/wheel/./SyMBac/deep_learning
2026-03-05T06:56:18,353   copying build/lib/SyMBac/colony_renderer.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,356   creating build/bdist.linux-armv7l/wheel/SyMBac/physics
2026-03-05T06:56:18,357   copying build/lib/SyMBac/physics/joints.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,359   copying build/lib/SyMBac/physics/__init__.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,362   copying build/lib/SyMBac/physics/growth_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,364   copying build/lib/SyMBac/physics/config.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,366   copying build/lib/SyMBac/physics/simcell.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,368   copying build/lib/SyMBac/physics/simulator.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,371   copying build/lib/SyMBac/physics/microfluidic_geometry.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,373   copying build/lib/SyMBac/physics/division_manager.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,376   copying build/lib/SyMBac/physics/colony.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,380   copying build/lib/SyMBac/physics/physics_representation.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,383   copying build/lib/SyMBac/physics/segments.py -> build/bdist.linux-armv7l/wheel/./SyMBac/physics
2026-03-05T06:56:18,385   copying build/lib/SyMBac/cell.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,388   copying build/lib/SyMBac/pySHINE.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,391   copying build/lib/SyMBac/lineage.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,394   copying build/lib/SyMBac/drawing.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,397   copying build/lib/SyMBac/_deprecation.py -> build/bdist.linux-armv7l/wheel/./SyMBac
2026-03-05T06:56:18,398   running install_egg_info
2026-03-05T06:56:18,403   Copying SyMBac.egg-info to build/bdist.linux-armv7l/wheel/./SyMBac-0.5.2-py3.11.egg-info
2026-03-05T06:56:18,415   running install_scripts
2026-03-05T06:56:18,427   creating build/bdist.linux-armv7l/wheel/symbac-0.5.2.dist-info/WHEEL
2026-03-05T06:56:18,431   creating '/tmp/pip-wheel-vbyxb821/.tmp-dty0gj5p/symbac-0.5.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-05T06:56:18,434   adding 'SyMBac/PSF.py'
2026-03-05T06:56:18,436   adding 'SyMBac/__init__.py'
2026-03-05T06:56:18,437   adding 'SyMBac/_deprecation.py'
2026-03-05T06:56:18,441   adding 'SyMBac/auto_optimise.py'
2026-03-05T06:56:18,443   adding 'SyMBac/cell.py'
2026-03-05T06:56:18,445   adding 'SyMBac/cell_geometry.py'
2026-03-05T06:56:18,447   adding 'SyMBac/cell_simulation.py'
2026-03-05T06:56:18,449   adding 'SyMBac/cell_snapshot.py'
2026-03-05T06:56:18,451   adding 'SyMBac/colony_renderer.py'
2026-03-05T06:56:18,453   adding 'SyMBac/colony_simulation.py'
2026-03-05T06:56:18,457   adding 'SyMBac/drawing.py'
2026-03-05T06:56:18,459   adding 'SyMBac/lineage.py'
2026-03-05T06:56:18,460   adding 'SyMBac/metrics.py'
2026-03-05T06:56:18,462   adding 'SyMBac/misc.py'
2026-03-05T06:56:18,464   adding 'SyMBac/pySHINE.py'
2026-03-05T06:56:18,470   adding 'SyMBac/renderer.py'
2026-03-05T06:56:18,473   adding 'SyMBac/simulation.py'
2026-03-05T06:56:18,475   adding 'SyMBac/trench_geometry.py'
2026-03-05T06:56:18,476   adding 'SyMBac/deep_learning/__init__.py'
2026-03-05T06:56:18,478   adding 'SyMBac/deep_learning/loss.py'
2026-03-05T06:56:18,479   adding 'SyMBac/deep_learning/model_blocks.py'
2026-03-05T06:56:18,481   adding 'SyMBac/deep_learning/tensorflow_augmentations.py'
2026-03-05T06:56:18,483   adding 'SyMBac/external/__init__.py'
2026-03-05T06:56:18,484   adding 'SyMBac/external/DeLTA/__init__.py'
2026-03-05T06:56:18,486   adding 'SyMBac/external/DeLTA/bioformats2sequence.py'
2026-03-05T06:56:18,487   adding 'SyMBac/external/DeLTA/config.py'
2026-03-05T06:56:18,491   adding 'SyMBac/external/DeLTA/data.py'
2026-03-05T06:56:18,493   adding 'SyMBac/external/DeLTA/model.py'
2026-03-05T06:56:18,496   adding 'SyMBac/external/DeLTA/pipeline.py'
2026-03-05T06:56:18,498   adding 'SyMBac/external/DeLTA/segmentation.py'
2026-03-05T06:56:18,499   adding 'SyMBac/external/DeLTA/segmentation_chambers.py'
2026-03-05T06:56:18,500   adding 'SyMBac/external/DeLTA/tracking.py'
2026-03-05T06:56:18,502   adding 'SyMBac/external/DeLTA/train_seg.py'
2026-03-05T06:56:18,503   adding 'SyMBac/external/DeLTA/train_seg_chambers.py'
2026-03-05T06:56:18,504   adding 'SyMBac/external/DeLTA/train_track.py'
2026-03-05T06:56:18,510   adding 'SyMBac/external/DeLTA/utilities.py'
2026-03-05T06:56:18,512   adding 'SyMBac/physics/__init__.py'
2026-03-05T06:56:18,514   adding 'SyMBac/physics/colony.py'
2026-03-05T06:56:18,516   adding 'SyMBac/physics/config.py'
2026-03-05T06:56:18,517   adding 'SyMBac/physics/division_manager.py'
2026-03-05T06:56:18,519   adding 'SyMBac/physics/growth_manager.py'
2026-03-05T06:56:18,520   adding 'SyMBac/physics/joints.py'
2026-03-05T06:56:18,522   adding 'SyMBac/physics/microfluidic_geometry.py'
2026-03-05T06:56:18,524   adding 'SyMBac/physics/physics_representation.py'
2026-03-05T06:56:18,526   adding 'SyMBac/physics/segments.py'
2026-03-05T06:56:18,528   adding 'SyMBac/physics/simcell.py'
2026-03-05T06:56:18,530   adding 'SyMBac/physics/simulator.py'
2026-03-05T06:56:18,532   adding 'SyMBac/sample_images/__init__.py'
2026-03-05T06:56:18,536   adding 'SyMBac/sample_images/sample_100x.tiff'
2026-03-05T06:56:18,540   adding 'SyMBac/sample_images/sample_100x_stationary.tiff'
2026-03-05T06:56:18,544   adding 'SyMBac/sample_images/sample_DeLTA.tiff'
2026-03-05T06:56:18,549   adding 'symbac-0.5.2.dist-info/licenses/LICENSE'
2026-03-05T06:56:18,551   adding 'symbac-0.5.2.dist-info/METADATA'
2026-03-05T06:56:18,553   adding 'symbac-0.5.2.dist-info/WHEEL'
2026-03-05T06:56:18,554   adding 'symbac-0.5.2.dist-info/top_level.txt'
2026-03-05T06:56:18,555   adding 'symbac-0.5.2.dist-info/RECORD'
2026-03-05T06:56:18,563   removing build/bdist.linux-armv7l/wheel
2026-03-05T06:56:18,682   Building wheel for symbac (pyproject.toml): finished with status 'done'
2026-03-05T06:56:18,692   Created wheel for symbac: filename=symbac-0.5.2-py3-none-any.whl size=213096 sha256=ef07b16923ea8a4699fbaac29b6981f5caca09a205e387ec9908500a63a53b4b
2026-03-05T06:56:18,693   Stored in directory: /tmp/pip-ephem-wheel-cache-una9q05v/wheels/98/62/b6/657b23f900dc3bf4dc55c65fb0b4e247912c19e7f2dbd896a5
2026-03-05T06:56:18,707 Successfully built symbac
2026-03-05T06:56:18,717 Removed build tracker: '/tmp/pip-build-tracker-qm1_rrj8'