2026-03-05T10:46:55,194 Created temporary directory: /tmp/pip-build-tracker-kkv_1tcv 2026-03-05T10:46:55,195 Initialized build tracking at /tmp/pip-build-tracker-kkv_1tcv 2026-03-05T10:46:55,195 Created build tracker: /tmp/pip-build-tracker-kkv_1tcv 2026-03-05T10:46:55,195 Entered build tracker: /tmp/pip-build-tracker-kkv_1tcv 2026-03-05T10:46:55,195 Created temporary directory: /tmp/pip-wheel-brcg350q 2026-03-05T10:46:55,199 Created temporary directory: /tmp/pip-ephem-wheel-cache-mkhyak1m 2026-03-05T10:46:55,287 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T10:46:55,289 2 location(s) to search for versions of kssdutils: 2026-03-05T10:46:55,289 * https://pypi.org/simple/kssdutils/ 2026-03-05T10:46:55,289 * https://www.piwheels.org/simple/kssdutils/ 2026-03-05T10:46:55,290 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2026-03-05T10:46:55,290 Getting page https://pypi.org/simple/kssdutils/ 2026-03-05T10:46:55,291 Found index url https://pypi.org/simple/ 2026-03-05T10:46:55,364 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2026-03-05T10:46:55,366 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2026-03-05T10:46:55,366 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2026-03-05T10:46:55,367 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2026-03-05T10:46:55,367 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2026-03-05T10:46:55,367 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2026-03-05T10:46:55,367 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2026-03-05T10:46:55,367 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2026-03-05T10:46:55,368 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2026-03-05T10:46:55,368 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2026-03-05T10:46:55,368 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2026-03-05T10:46:55,368 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2026-03-05T10:46:55,369 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2026-03-05T10:46:55,369 Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.7 2026-03-05T10:46:55,369 Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.8 2026-03-05T10:46:55,369 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2026-03-05T10:46:55,370 Getting page https://www.piwheels.org/simple/kssdutils/ 2026-03-05T10:46:55,371 Found index url https://www.piwheels.org/simple/ 2026-03-05T10:46:55,468 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,477 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,478 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,478 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,478 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,478 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,479 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,479 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,479 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,480 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,481 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,483 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,483 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,483 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,483 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,484 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-05T10:46:55,485 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2026-03-05T10:46:55,485 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2026-03-05T10:46:55,514 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2026-03-05T10:46:55,515 Collecting kssdutils==1.1.8 2026-03-05T10:46:55,516 Created temporary directory: /tmp/pip-unpack-otxi8ocz 2026-03-05T10:46:55,672 Downloading kssdutils-1.1.8.tar.gz (44 kB) 2026-03-05T10:46:55,723 Added kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz to build tracker '/tmp/pip-build-tracker-kkv_1tcv' 2026-03-05T10:46:55,728 Running setup.py (path:/tmp/pip-wheel-brcg350q/kssdutils_ac16a7f177984b5cb4c87943bca1ca57/setup.py) egg_info for package kssdutils 2026-03-05T10:46:55,728 Created temporary directory: /tmp/pip-pip-egg-info-2yx_az_v 2026-03-05T10:46:55,729 Preparing metadata (setup.py): started 2026-03-05T10:46:55,730 Running command python setup.py egg_info 2026-03-05T10:46:56,954 running egg_info 2026-03-05T10:46:57,027 creating /tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info 2026-03-05T10:46:57,027 writing /tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/PKG-INFO 2026-03-05T10:46:57,028 writing dependency_links to /tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/dependency_links.txt 2026-03-05T10:46:57,029 writing top-level names to /tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/top_level.txt 2026-03-05T10:46:57,029 writing manifest file '/tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/SOURCES.txt' 2026-03-05T10:46:57,250 reading manifest file '/tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/SOURCES.txt' 2026-03-05T10:46:57,251 reading manifest template 'MANIFEST.in' 2026-03-05T10:46:57,255 writing manifest file '/tmp/pip-pip-egg-info-2yx_az_v/kssdutils.egg-info/SOURCES.txt' 2026-03-05T10:46:57,366 Preparing metadata (setup.py): finished with status 'done' 2026-03-05T10:46:57,370 Source in /tmp/pip-wheel-brcg350q/kssdutils_ac16a7f177984b5cb4c87943bca1ca57 has version 1.1.8, which satisfies requirement kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz 2026-03-05T10:46:57,370 Removed kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz from build tracker '/tmp/pip-build-tracker-kkv_1tcv' 2026-03-05T10:46:57,373 Created temporary directory: /tmp/pip-unpack-5b6bnety 2026-03-05T10:46:57,373 Created temporary directory: /tmp/pip-unpack-fvu5f5rv 2026-03-05T10:46:57,374 Building wheels for collected packages: kssdutils 2026-03-05T10:46:57,375 Created temporary directory: /tmp/pip-wheel-jba46vb1 2026-03-05T10:46:57,375 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2026-03-05T10:46:57,376 Building wheel for kssdutils (setup.py): started 2026-03-05T10:46:57,377 Destination directory: /tmp/pip-wheel-jba46vb1 2026-03-05T10:46:57,377 Running command python setup.py bdist_wheel 2026-03-05T10:46:58,433 running bdist_wheel 2026-03-05T10:46:58,749 running build 2026-03-05T10:46:58,749 running build_ext 2026-03-05T10:46:59,184 building 'kssdtool' extension 2026-03-05T10:46:59,186 creating build/temp.linux-armv7l-cpython-313 2026-03-05T10:46:59,188 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2026-03-05T10:46:59,413 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-03-05T10:46:59,413 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-05T10:46:59,413 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-03-05T10:46:59,413 | ^ 2026-03-05T10:46:59,416 co2mco.c: In function ‘co2unitllmco’: 2026-03-05T10:46:59,416 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-05T10:46:59,416 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-03-05T10:46:59,417 | ^ 2026-03-05T10:47:00,115 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2026-03-05T10:47:00,500 command_composite.c: In function ‘get_species_abundance’: 2026-03-05T10:47:00,500 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-05T10:47:00,500 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-03-05T10:47:00,501 | ^~ 2026-03-05T10:47:00,501 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-05T10:47:00,501 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-03-05T10:47:00,501 | ^~ 2026-03-05T10:47:00,501 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:00,501 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-05T10:47:00,501 | ^ 2026-03-05T10:47:00,501 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:00,501 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-05T10:47:00,501 | ^~~~~~~~~~ 2026-03-05T10:47:00,502 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-05T10:47:00,502 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-05T10:47:00,502 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:00,502 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:00,502 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-05T10:47:00,502 | ^ 2026-03-05T10:47:00,502 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:00,502 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-05T10:47:00,502 | ^~~~~~~~~~ 2026-03-05T10:47:00,502 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-05T10:47:00,502 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-05T10:47:00,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:00,503 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:00,503 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,503 | ^ 2026-03-05T10:47:00,503 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:00,503 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,503 | ^~~~~~~~~~ 2026-03-05T10:47:00,503 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-05T10:47:00,503 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,503 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:00,504 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:00,504 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-05T10:47:00,504 | ^ 2026-03-05T10:47:00,504 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:00,504 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-05T10:47:00,504 | ^~~~~~~~~~ 2026-03-05T10:47:00,504 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-05T10:47:00,504 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-05T10:47:00,504 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:00,504 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:00,505 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,505 | ^ 2026-03-05T10:47:00,505 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:00,505 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,505 | ^~~~~~~~~~~~ 2026-03-05T10:47:00,505 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2026-03-05T10:47:00,505 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-05T10:47:00,505 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:00,751 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2026-03-05T10:47:01,014 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-05T10:47:01,016 command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,016 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,016 | ~~^ 2026-03-05T10:47:01,016 | | 2026-03-05T10:47:01,016 | long unsigned int 2026-03-05T10:47:01,017 | %u 2026-03-05T10:47:01,017 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,017 | ~~~~~~~ 2026-03-05T10:47:01,017 | | 2026-03-05T10:47:01,017 | size_t {aka unsigned int} 2026-03-05T10:47:01,018 command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,018 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,018 | ~~^ 2026-03-05T10:47:01,018 | | 2026-03-05T10:47:01,018 | long unsigned int 2026-03-05T10:47:01,019 | %u 2026-03-05T10:47:01,019 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,019 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-05T10:47:01,019 | ~~~~~~~~~ 2026-03-05T10:47:01,019 | | 2026-03-05T10:47:01,019 | size_t {aka unsigned int} 2026-03-05T10:47:01,020 command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-05T10:47:01,020 677 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,020 | ~~^ 2026-03-05T10:47:01,020 | | 2026-03-05T10:47:01,020 | long unsigned int 2026-03-05T10:47:01,020 | %u 2026-03-05T10:47:01,021 678 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,021 679 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-05T10:47:01,021 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,021 | | 2026-03-05T10:47:01,021 | unsigned int 2026-03-05T10:47:01,023 command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-05T10:47:01,023 715 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-03-05T10:47:01,023 | ^ 2026-03-05T10:47:01,030 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-05T10:47:01,033 command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,033 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-05T10:47:01,033 | ~~^ ~~~~~~~ 2026-03-05T10:47:01,033 | | | 2026-03-05T10:47:01,033 | long unsigned int size_t {aka unsigned int} 2026-03-05T10:47:01,033 | %u 2026-03-05T10:47:01,035 command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,035 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-05T10:47:01,035 | ~~^ 2026-03-05T10:47:01,035 | | 2026-03-05T10:47:01,035 | long unsigned int 2026-03-05T10:47:01,035 | %u 2026-03-05T10:47:01,036 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-05T10:47:01,036 | ~~~~~~~~~ 2026-03-05T10:47:01,036 | | 2026-03-05T10:47:01,036 | size_t {aka unsigned int} 2026-03-05T10:47:01,037 command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-05T10:47:01,038 863 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-05T10:47:01,038 | ~~^ 2026-03-05T10:47:01,038 | | 2026-03-05T10:47:01,038 | long unsigned int 2026-03-05T10:47:01,038 | %u 2026-03-05T10:47:01,038 864 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-05T10:47:01,038 865 | (size_t) b * unitsz_distf_mapped); 2026-03-05T10:47:01,038 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,038 | | 2026-03-05T10:47:01,039 | unsigned int 2026-03-05T10:47:01,040 command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-03-05T10:47:01,040 810 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-03-05T10:47:01,041 | ^~~~~~~ 2026-03-05T10:47:01,041 command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-03-05T10:47:01,041 809 | struct stat cbd_fcode_stat; 2026-03-05T10:47:01,041 | ^~~~~~~~~~~~~~ 2026-03-05T10:47:01,042 command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-03-05T10:47:01,042 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-05T10:47:01,042 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,043 command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-03-05T10:47:01,043 808 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-05T10:47:01,044 | ^~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,050 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-05T10:47:01,052 command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,053 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,053 | ~~^ 2026-03-05T10:47:01,053 | | 2026-03-05T10:47:01,053 | long unsigned int 2026-03-05T10:47:01,053 | %u 2026-03-05T10:47:01,053 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,053 | ~~~~~~~ 2026-03-05T10:47:01,053 | | 2026-03-05T10:47:01,053 | size_t {aka unsigned int} 2026-03-05T10:47:01,055 command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:01,055 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,056 | ~~^ 2026-03-05T10:47:01,056 | | 2026-03-05T10:47:01,056 | long unsigned int 2026-03-05T10:47:01,056 | %u 2026-03-05T10:47:01,056 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,056 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-05T10:47:01,056 | ~~~~~~~~~ 2026-03-05T10:47:01,056 | | 2026-03-05T10:47:01,056 | size_t {aka unsigned int} 2026-03-05T10:47:01,058 command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-05T10:47:01,058 1018 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-05T10:47:01,058 | ~~^ 2026-03-05T10:47:01,059 | | 2026-03-05T10:47:01,059 | long unsigned int 2026-03-05T10:47:01,059 | %u 2026-03-05T10:47:01,059 1019 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-05T10:47:01,059 1020 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-05T10:47:01,059 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,059 | | 2026-03-05T10:47:01,059 | unsigned int 2026-03-05T10:47:01,064 command_dist.c: In function ‘mco_co_dist_core’: 2026-03-05T10:47:01,065 command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-05T10:47:01,065 1116 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-03-05T10:47:01,065 | ^ 2026-03-05T10:47:01,066 command_dist.c: In function ‘fname_dist_print’: 2026-03-05T10:47:01,068 command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2026-03-05T10:47:01,068 1163 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2026-03-05T10:47:01,068 | ^ 2026-03-05T10:47:01,073 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-03-05T10:47:01,074 command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-05T10:47:01,074 1239 | for (int rid = 0; rid < ref_num; rid++) 2026-03-05T10:47:01,074 | ^ 2026-03-05T10:47:01,077 command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-05T10:47:01,077 1245 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-05T10:47:01,077 | ^ 2026-03-05T10:47:01,082 command_dist.c: In function ‘dist_print_nobin’: 2026-03-05T10:47:01,084 command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-05T10:47:01,084 1335 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-03-05T10:47:01,084 | ^ 2026-03-05T10:47:01,087 command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-05T10:47:01,087 1356 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-05T10:47:01,087 | ^ 2026-03-05T10:47:01,090 command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-05T10:47:01,090 1382 | for (int rid = 0; rid < ref_num; rid++) 2026-03-05T10:47:01,090 | ^ 2026-03-05T10:47:01,478 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-03-05T10:47:01,478 command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2026-03-05T10:47:01,478 403 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-03-05T10:47:01,478 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:01,479 command_dist.c:375:40: note: ‘com_abund_fp’ was declared here 2026-03-05T10:47:01,479 375 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-03-05T10:47:01,479 | ^~~~~~~~~~~~ 2026-03-05T10:47:02,282 command_dist.c: In function ‘get_dim_shuffle’: 2026-03-05T10:47:02,282 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-03-05T10:47:02,282 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-05T10:47:02,282 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:02,282 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-03-05T10:47:02,282 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-05T10:47:02,282 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,196 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-05T10:47:03,197 command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:03,198 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,198 | ^~ ~~~~~~~~~ 2026-03-05T10:47:03,198 command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-05T10:47:03,198 596 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,198 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,199 command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,199 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,199 | ^~~~~~~~~~~~~~~ 2026-03-05T10:47:03,200 command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-05T10:47:03,200 625 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,200 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,202 command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,202 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,203 | ^~~~~~~~~~~ 2026-03-05T10:47:03,203 command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:03,203 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,203 | ^~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,204 command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-05T10:47:03,204 681 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,204 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,205 command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,205 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,205 | ^~~~~ 2026-03-05T10:47:03,206 command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:03,206 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,206 | ^~~~~~~~~~~ 2026-03-05T10:47:03,207 command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-05T10:47:03,207 682 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,207 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,454 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-05T10:47:03,455 command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:03,455 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,455 | ^~ ~~~~~~~~~ 2026-03-05T10:47:03,456 command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-05T10:47:03,456 763 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,456 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,457 command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,457 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,458 | ^~~~~~~~~~~~~~~ 2026-03-05T10:47:03,458 command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-05T10:47:03,459 790 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,459 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,460 command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,460 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-05T10:47:03,460 | ^~~~~~~~~~~~~ 2026-03-05T10:47:03,461 command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-05T10:47:03,461 823 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-05T10:47:03,461 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,462 command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:03,462 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-05T10:47:03,462 | ^ 2026-03-05T10:47:03,463 command_dist.c:849:33: note: directive argument in the range [0, 536870912] 2026-03-05T10:47:03,463 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-05T10:47:03,463 | ^~~~~~~~~~ 2026-03-05T10:47:03,464 command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-05T10:47:03,464 849 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-05T10:47:03,465 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,466 command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:03,466 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-05T10:47:03,466 | ^ 2026-03-05T10:47:03,467 command_dist.c:851:28: note: directive argument in the range [0, 536870912] 2026-03-05T10:47:03,467 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-05T10:47:03,467 | ^~~~~~~~~~ 2026-03-05T10:47:03,468 command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-05T10:47:03,468 851 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-05T10:47:03,468 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,733 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-05T10:47:03,735 command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:03,735 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,735 | ^~ ~~~~~~~~~ 2026-03-05T10:47:03,736 command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-05T10:47:03,736 927 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-05T10:47:03,736 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,738 command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,738 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,738 | ^~~~~~~~~~~~~~~ 2026-03-05T10:47:03,739 command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-05T10:47:03,739 956 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-05T10:47:03,739 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,740 command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,741 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-05T10:47:03,741 | ^~~~~~~~~~~~~ 2026-03-05T10:47:03,742 command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-05T10:47:03,742 990 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-05T10:47:03,742 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,744 command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,744 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,744 | ^~~~~~~~~~~ 2026-03-05T10:47:03,745 command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:03,746 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,746 | ^~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,747 command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-05T10:47:03,747 1022 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-05T10:47:03,747 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:03,748 command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-05T10:47:03,748 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,748 | ^~~~~ 2026-03-05T10:47:03,750 command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:03,750 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,750 | ^~~~~~~~~~~ 2026-03-05T10:47:03,751 command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-05T10:47:03,751 1023 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-05T10:47:03,751 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:04,026 command_dist.c: In function ‘combine_queries’: 2026-03-05T10:47:04,028 command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:04,028 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-05T10:47:04,028 | ^ 2026-03-05T10:47:04,030 command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:04,030 1492 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-05T10:47:04,030 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:04,032 command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:04,032 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-05T10:47:04,032 | ^ 2026-03-05T10:47:04,034 command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:04,034 1499 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-05T10:47:04,034 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:04,037 command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:04,037 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-05T10:47:04,037 | ^~ ~~~~~~~~ 2026-03-05T10:47:04,039 command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-05T10:47:04,040 1603 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-05T10:47:04,040 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:04,525 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2026-03-05T10:47:04,697 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2026-03-05T10:47:04,864 command_set.c: In function ‘sketch_operate’: 2026-03-05T10:47:04,864 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-05T10:47:04,864 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-03-05T10:47:04,864 | ^ 2026-03-05T10:47:04,876 command_set.c: In function ‘combin_subset_pans’: 2026-03-05T10:47:04,876 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-05T10:47:04,876 457 | free(co_dstat_fpath); 2026-03-05T10:47:04,876 | ^~~~~~~~~~~~~~ 2026-03-05T10:47:04,877 In file included from kssdheaders/global_basic.h:159, 2026-03-05T10:47:04,877 from command_set.c:15: 2026-03-05T10:47:04,877 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-05T10:47:04,877 687 | extern void free (void *__ptr) __THROW; 2026-03-05T10:47:04,877 | ~~~~~~^~~~~ 2026-03-05T10:47:04,883 command_set.c: In function ‘grouping_genomes’: 2026-03-05T10:47:04,884 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-05T10:47:04,884 562 | free(co_dstat_fpath); 2026-03-05T10:47:04,884 | ^~~~~~~~~~~~~~ 2026-03-05T10:47:04,884 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-05T10:47:04,884 687 | extern void free (void *__ptr) __THROW; 2026-03-05T10:47:04,884 | ~~~~~~^~~~~ 2026-03-05T10:47:05,060 command_set.c: In function ‘sketch_union’: 2026-03-05T10:47:05,060 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,060 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,060 | ^ 2026-03-05T10:47:05,060 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,060 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,060 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,061 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,061 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,061 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,061 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,061 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,061 | ^~~~~~~~~~ 2026-03-05T10:47:05,061 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,061 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,061 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,061 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,062 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-05T10:47:05,062 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,062 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,062 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-05T10:47:05,062 | ^~~~~~~~~~ 2026-03-05T10:47:05,062 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-05T10:47:05,062 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-05T10:47:05,062 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,191 command_set.c: In function ‘sketch_operate’: 2026-03-05T10:47:05,191 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,192 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-05T10:47:05,192 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,192 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,192 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-05T10:47:05,192 | ^~~~~~~~~~ 2026-03-05T10:47:05,192 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-05T10:47:05,192 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-05T10:47:05,192 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,192 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,192 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-05T10:47:05,192 | ^~ ~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,193 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,193 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-05T10:47:05,193 | ^~~~~~~~~~ 2026-03-05T10:47:05,193 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-05T10:47:05,193 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-05T10:47:05,193 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,193 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,193 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,193 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,193 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,193 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,194 | ^~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,194 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,194 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,194 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,194 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,194 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,194 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,194 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,194 | ^~~~~~~~~~ 2026-03-05T10:47:05,194 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,195 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-05T10:47:05,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,195 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,195 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,195 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,195 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,195 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,195 | ^~~~~~~~~~ 2026-03-05T10:47:05,195 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,195 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,196 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,196 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,196 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,196 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,196 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,196 | ^~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,196 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,196 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-05T10:47:05,196 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,196 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,196 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,197 | ^ 2026-03-05T10:47:05,197 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,197 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,197 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,363 command_set.c: In function ‘uniq_sketch_union’: 2026-03-05T10:47:05,363 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,363 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-05T10:47:05,364 | ^ 2026-03-05T10:47:05,364 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2026-03-05T10:47:05,364 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-05T10:47:05,364 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,364 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,364 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,364 | ^ 2026-03-05T10:47:05,364 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,364 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,364 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,365 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,365 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,365 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,365 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,365 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,365 | ^~~~~~~~~~ 2026-03-05T10:47:05,366 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,366 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-05T10:47:05,366 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,366 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,366 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-05T10:47:05,366 | ^~ ~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,366 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,366 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-05T10:47:05,367 | ^~~~~~~~~~ 2026-03-05T10:47:05,367 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-05T10:47:05,367 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-05T10:47:05,367 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,509 command_set.c: In function ‘combin_pans’: 2026-03-05T10:47:05,510 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,510 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,510 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,510 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-03-05T10:47:05,510 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,511 | ^~~~~~~~~~ 2026-03-05T10:47:05,511 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-03-05T10:47:05,511 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,511 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,511 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,512 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,512 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,512 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-03-05T10:47:05,512 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,512 | ^~~~~~~~~~ 2026-03-05T10:47:05,512 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-03-05T10:47:05,512 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,512 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,513 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,513 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,513 | ^ 2026-03-05T10:47:05,514 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,514 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,514 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,732 command_set.c: In function ‘combin_subset_pans’: 2026-03-05T10:47:05,733 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,733 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,733 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,734 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,734 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,734 | ^~~~~~~~~~ 2026-03-05T10:47:05,734 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,734 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,734 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,735 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,735 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,735 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,736 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,736 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,736 | ^~~~~~~~~~ 2026-03-05T10:47:05,736 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,736 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,736 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,737 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,737 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,737 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,738 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,738 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,738 | ^~~~~~~~~~ 2026-03-05T10:47:05,738 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,738 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,739 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,740 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,740 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,740 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,740 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,740 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,740 | ^~~~~~~~~~ 2026-03-05T10:47:05,741 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,741 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,741 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,742 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,742 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,742 | ^ 2026-03-05T10:47:05,742 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,742 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,742 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,977 command_set.c: In function ‘grouping_genomes’: 2026-03-05T10:47:05,978 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,978 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,978 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,979 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,979 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,979 | ^~~~~~~~~~ 2026-03-05T10:47:05,980 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,980 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-05T10:47:05,980 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,981 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,981 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,981 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,982 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,982 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,982 | ^~~~~~~~~~ 2026-03-05T10:47:05,982 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,982 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-05T10:47:05,982 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,984 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,984 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,984 | ^~ ~~~~~~~~~~~ 2026-03-05T10:47:05,984 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,985 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,985 | ^~~~~~~~~~ 2026-03-05T10:47:05,985 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-05T10:47:05,985 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-05T10:47:05,985 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,987 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-05T10:47:05,987 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,987 | ^~ ~~~~~~~~~~ 2026-03-05T10:47:05,987 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-05T10:47:05,987 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,988 | ^~~~~~~~~~ 2026-03-05T10:47:05,988 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-05T10:47:05,988 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-05T10:47:05,988 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:05,989 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-05T10:47:05,989 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,989 | ^ 2026-03-05T10:47:05,990 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-05T10:47:05,990 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-05T10:47:05,990 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-05T10:47:06,268 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2026-03-05T10:47:06,577 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2026-03-05T10:47:06,773 global_basic.c: In function ‘organize_infile_list’: 2026-03-05T10:47:06,773 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-03-05T10:47:06,773 195 | while (isspace(*buf)) buf++; 2026-03-05T10:47:06,773 | ^~~~~~~ 2026-03-05T10:47:06,773 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2026-03-05T10:47:06,774 34 | #include 2026-03-05T10:47:06,774 +++ |+#include 2026-03-05T10:47:06,774 35 | 2026-03-05T10:47:06,774 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:06,774 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-05T10:47:06,774 | ~~^ 2026-03-05T10:47:06,774 | | 2026-03-05T10:47:06,774 | long unsigned int 2026-03-05T10:47:06,774 | %u 2026-03-05T10:47:06,774 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-05T10:47:06,775 | ~~~~~~~~~~~ 2026-03-05T10:47:06,775 | | 2026-03-05T10:47:06,775 | size_t {aka unsigned int} 2026-03-05T10:47:06,775 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-05T10:47:06,776 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-05T10:47:06,776 | ~~^ 2026-03-05T10:47:06,776 | | 2026-03-05T10:47:06,776 | long unsigned int 2026-03-05T10:47:06,776 | %u 2026-03-05T10:47:06,776 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-05T10:47:06,776 | ~~~~~~~~~~~ 2026-03-05T10:47:06,776 | | 2026-03-05T10:47:06,776 | size_t {aka unsigned int} 2026-03-05T10:47:06,795 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2026-03-05T10:47:06,956 ERROR: python setup.py bdist_wheel exited with 1 2026-03-05T10:47:06,968 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2026-03-05T10:47:06,968 exec(compile('"'"''"'"''"'"' 2026-03-05T10:47:06,968 # This is -- a caller that pip uses to run setup.py 2026-03-05T10:47:06,968 # 2026-03-05T10:47:06,968 # - It imports setuptools before invoking setup.py, to enable projects that directly 2026-03-05T10:47:06,968 # import from `distutils.core` to work with newer packaging standards. 2026-03-05T10:47:06,968 # - It provides a clear error message when setuptools is not installed. 2026-03-05T10:47:06,968 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2026-03-05T10:47:06,968 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2026-03-05T10:47:06,968 # manifest_maker: standard file '"'"'-c'"'"' not found". 2026-03-05T10:47:06,968 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2026-03-05T10:47:06,968 import os, sys, tokenize, traceback 2026-03-05T10:47:06,968 2026-03-05T10:47:06,968 try: 2026-03-05T10:47:06,968 import setuptools 2026-03-05T10:47:06,968 except ImportError: 2026-03-05T10:47:06,968 print( 2026-03-05T10:47:06,968 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2026-03-05T10:47:06,968 "the build environment with exception:", 2026-03-05T10:47:06,968 file=sys.stderr, 2026-03-05T10:47:06,968 ) 2026-03-05T10:47:06,968 traceback.print_exc() 2026-03-05T10:47:06,968 sys.exit(1) 2026-03-05T10:47:06,968 2026-03-05T10:47:06,968 __file__ = %r 2026-03-05T10:47:06,968 sys.argv[0] = __file__ 2026-03-05T10:47:06,968 2026-03-05T10:47:06,968 if os.path.exists(__file__): 2026-03-05T10:47:06,968 filename = __file__ 2026-03-05T10:47:06,968 with tokenize.open(__file__) as f: 2026-03-05T10:47:06,968 setup_py_code = f.read() 2026-03-05T10:47:06,968 else: 2026-03-05T10:47:06,968 filename = "" 2026-03-05T10:47:06,968 setup_py_code = "from setuptools import setup; setup()" 2026-03-05T10:47:06,968 2026-03-05T10:47:06,968 exec(compile(setup_py_code, filename, "exec")) 2026-03-05T10:47:06,968 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-brcg350q/kssdutils_ac16a7f177984b5cb4c87943bca1ca57/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-jba46vb1[/] 2026-03-05T10:47:06,969 [bold magenta]cwd[/]: /tmp/pip-wheel-brcg350q/kssdutils_ac16a7f177984b5cb4c87943bca1ca57/ 2026-03-05T10:47:06,969 Building wheel for kssdutils (setup.py): finished with status 'error' 2026-03-05T10:47:06,969 ERROR: Failed building wheel for kssdutils 2026-03-05T10:47:06,970 Running setup.py clean for kssdutils 2026-03-05T10:47:06,971 Running command python setup.py clean 2026-03-05T10:47:08,427 running clean 2026-03-05T10:47:08,585 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2026-03-05T10:47:08,586 'build/lib.linux-armv7l-cpython-313' does not exist -- can't clean it 2026-03-05T10:47:08,586 'build/bdist.linux-armv7l' does not exist -- can't clean it 2026-03-05T10:47:08,586 'build/scripts-3.13' does not exist -- can't clean it 2026-03-05T10:47:08,586 removing 'build' 2026-03-05T10:47:08,699 Failed to build kssdutils 2026-03-05T10:47:08,700 ERROR: Failed to build one or more wheels 2026-03-05T10:47:08,701 Exception information: 2026-03-05T10:47:08,701 Traceback (most recent call last): 2026-03-05T10:47:08,701 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2026-03-05T10:47:08,701 status = _inner_run() 2026-03-05T10:47:08,701 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2026-03-05T10:47:08,701 return self.run(options, args) 2026-03-05T10:47:08,701 ~~~~~~~~^^^^^^^^^^^^^^^ 2026-03-05T10:47:08,701 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2026-03-05T10:47:08,701 return func(self, options, args) 2026-03-05T10:47:08,701 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2026-03-05T10:47:08,701 raise CommandError("Failed to build one or more wheels") 2026-03-05T10:47:08,701 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-03-05T10:47:08,708 Removed build tracker: '/tmp/pip-build-tracker-kkv_1tcv'