2026-03-05T13:50:56,165 Created temporary directory: /tmp/pip-ephem-wheel-cache-bejvztdc 2026-03-05T13:50:56,167 Created temporary directory: /tmp/pip-build-tracker-t_6y26j9 2026-03-05T13:50:56,168 Initialized build tracking at /tmp/pip-build-tracker-t_6y26j9 2026-03-05T13:50:56,168 Created build tracker: /tmp/pip-build-tracker-t_6y26j9 2026-03-05T13:50:56,168 Entered build tracker: /tmp/pip-build-tracker-t_6y26j9 2026-03-05T13:50:56,169 Created temporary directory: /tmp/pip-wheel-sx1btsua 2026-03-05T13:50:56,172 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T13:50:56,175 Created temporary directory: /tmp/pip-ephem-wheel-cache-dmozp2mr 2026-03-05T13:50:56,196 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T13:50:56,199 2 location(s) to search for versions of biobb-dna: 2026-03-05T13:50:56,199 * https://pypi.org/simple/biobb-dna/ 2026-03-05T13:50:56,199 * https://www.piwheels.org/simple/biobb-dna/ 2026-03-05T13:50:56,200 Fetching project page and analyzing links: https://pypi.org/simple/biobb-dna/ 2026-03-05T13:50:56,201 Getting page https://pypi.org/simple/biobb-dna/ 2026-03-05T13:50:56,202 Found index url https://pypi.org/simple 2026-03-05T13:50:56,417 Fetched page https://pypi.org/simple/biobb-dna/ as application/vnd.pypi.simple.v1+json 2026-03-05T13:50:56,426 Skipping link: No binaries permitted for biobb-dna: 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2026-03-05T13:50:56,445 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/01/1f/e19d69ba55e98f2a4c7613c3dd6bc34e3fe3c13b427ff0679ef136eb5ebd/biobb_dna-3.8.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7) 2026-03-05T13:50:56,446 Found link https://files.pythonhosted.org/packages/e7/17/02c98e08c5d87def49ce1b838eeda49b21f17ee3bfadc892579b797a6a3c/biobb_dna-3.8.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7), version: 3.8.2 2026-03-05T13:50:56,447 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/74/63/9e100399ec8f50d7fcba39818c6f27421e00ff2bc0c086b39afa6636217a/biobb_dna-3.9.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2026-03-05T13:50:56,448 Link requires a different Python (3.11.2 not in: '>=3.7,<3.10'): 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https://files.pythonhosted.org/packages/80/fe/4c9c9705ff8fc51b8acc3be707a7b713420627a0a2fef28d110fe0e77131/biobb_dna-4.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2026-03-05T13:50:56,454 Found link https://files.pythonhosted.org/packages/6a/82/fa879d949eb9e7abafa4bb82af940c224fc4e6e19b613d541c2ce048c2cd/biobb_dna-4.2.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.0 2026-03-05T13:50:56,454 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/19/19/2aac167e22fc609602273f893691ee82a68c72c02945b272a1abbe520a1f/biobb_dna-4.2.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2026-03-05T13:50:56,455 Found link https://files.pythonhosted.org/packages/24/f8/3c6841cf8ca488ed103426e1b0cbe263899d048bf131ffb4f2f0c4084b99/biobb_dna-4.2.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.1 2026-03-05T13:50:56,456 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/15/6a/5126a8f72789ccb0269e627266e04f5bd01c3039d264ccab3667570f8dfd/biobb_dna-4.2.2-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2026-03-05T13:50:56,457 Found link https://files.pythonhosted.org/packages/99/5c/523255796e940afc9fa3d8881708f109efc7819fdd2156cfbb70df594f05/biobb_dna-4.2.2.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8), version: 4.2.2 2026-03-05T13:50:56,458 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/36/29/107c4134099ab74ba073d9b3091c99717b854910798ca5594d6d7c9b4fb5/biobb_dna-4.2.3-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.8) 2026-03-05T13:50:56,458 Found link https://files.pythonhosted.org/packages/81/cb/434e774a7f5cadf9ccd04e25ee583836bf974066f5718648f4fefb9b9284/biobb_dna-4.2.3.tar.gz (from 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(requires-python:>=3.9) 2026-03-05T13:50:56,465 Found link https://files.pythonhosted.org/packages/a6/95/1759571018eff5411bdc34d558e3b3b800b3ae6dcaedcf24c99d615b277d/biobb_dna-5.1.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.9), version: 5.1.0 2026-03-05T13:50:56,466 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/d2/06/866b499a6db2d0a73e9b56674afc8fb2113357c1c4ffffe9f03afe66342e/biobb_dna-5.2.0-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10) 2026-03-05T13:50:56,466 Found link https://files.pythonhosted.org/packages/2c/15/f96fb7fa7dd26282561d01ca504eaacc8e00240586ff894b0435dfe977a6/biobb_dna-5.2.0.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10), version: 5.2.0 2026-03-05T13:50:56,467 Skipping link: No binaries permitted for biobb-dna: https://files.pythonhosted.org/packages/ae/54/5a94aad3c9895fbd2004fb0d17887aa205c4f92a895d5f5acb5566a21650/biobb_dna-5.2.1-py3-none-any.whl (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10) 2026-03-05T13:50:56,468 Found link https://files.pythonhosted.org/packages/c6/55/da4717d827170a36e9b2f5ade32957ccd7621bb72e5a4a27c927573d5245/biobb_dna-5.2.1.tar.gz (from https://pypi.org/simple/biobb-dna/) (requires-python:>=3.10), version: 5.2.1 2026-03-05T13:50:56,469 Fetching project page and analyzing links: https://www.piwheels.org/simple/biobb-dna/ 2026-03-05T13:50:56,470 Getting page https://www.piwheels.org/simple/biobb-dna/ 2026-03-05T13:50:56,471 Found index url https://www.piwheels.org/simple 2026-03-05T13:50:56,626 Fetched page https://www.piwheels.org/simple/biobb-dna/ as text/html 2026-03-05T13:50:56,633 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.2.0-py3-none-any.whl#sha256=5858ca7c5c47c83572b4b93cf27402ebc2cabe1952267784e80b19b9b794723a (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.10) 2026-03-05T13:50:56,634 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.1.0-py3-none-any.whl#sha256=c260516a48309267d3ff3c7778adefde051e9193a26e60ae4f45f1f571028a75 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.9) 2026-03-05T13:50:56,634 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-5.0.1-py3-none-any.whl#sha256=c254a410c55256c430977464637598803c90219a61b05ea02f0853b873292091 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.9) 2026-03-05T13:50:56,635 Skipping link: No binaries permitted for biobb-dna: 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https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.1.0-py3-none-any.whl#sha256=0d2b72ff9c80187e1c43d474e29882299e0d2a43965a2b4f52eae39410cc44e7 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.8) 2026-03-05T13:50:56,639 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-4.0.0-py3-none-any.whl#sha256=b957365e97233440b8d586a12cfb51c820d602c64f962b427edc863572a1c643 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2026-03-05T13:50:56,639 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.9.0-py3-none-any.whl#sha256=8e3610ec7977638287956fdb98eccfe31ecba6873dc2d3b85ea33b6f59543d6f (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:>=3.7,<3.10) 2026-03-05T13:50:56,640 Skipping link: No binaries permitted for biobb-dna: 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https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.7.1-py3-none-any.whl#sha256=401dc8e74a0f111e8ada11afb6a59b062ae05d2f69d4ee1aa049477185754ad1 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,642 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.7.0-py3-none-any.whl#sha256=e42072589209e892386434c35e11ee73f57e2ce9ef7202f2be38fc9983f83add (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,643 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.6.2-py3-none-any.whl#sha256=069324c14533016c09ccd15d423ad7a65e6a8ea463c1887e48105eabffb60e44 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,643 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-3.6.1-py3-none-any.whl#sha256=7e840a0978155f52c5bb4cfba0700f4fbd92a81e0c0cbbffd2e34dc7f3b1ce2a (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,644 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.1.1-py3-none-any.whl#sha256=efbeddf33264fd0ef0008d218c848ed6249c56bec37f9a839d027e68f7844ef2 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,644 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.1.0-py3-none-any.whl#sha256=9d0b85d296640a1f425dadceedd8346d063d125310af46a64507cc5b514700ae (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,645 Skipping link: No binaries permitted for biobb-dna: https://archive1.piwheels.org/simple/biobb-dna/biobb_dna-1.0.0-py3-none-any.whl#sha256=fa36efe075f457b421d5f8c71d6e98dde224a349ec7437e2ec3778680cdf27e9 (from https://www.piwheels.org/simple/biobb-dna/) (requires-python:==3.7.*) 2026-03-05T13:50:56,646 Skipping link: not a file: https://www.piwheels.org/simple/biobb-dna/ 2026-03-05T13:50:56,646 Skipping link: not a file: https://pypi.org/simple/biobb-dna/ 2026-03-05T13:50:56,668 Given no hashes to check 1 links for project 'biobb-dna': discarding no candidates 2026-03-05T13:50:56,688 Collecting biobb-dna==5.2.1 2026-03-05T13:50:56,690 Created temporary directory: /tmp/pip-unpack-1n384e8_ 2026-03-05T13:50:56,899 Downloading biobb_dna-5.2.1.tar.gz (41 kB) 2026-03-05T13:50:57,041 Added biobb-dna==5.2.1 from https://files.pythonhosted.org/packages/c6/55/da4717d827170a36e9b2f5ade32957ccd7621bb72e5a4a27c927573d5245/biobb_dna-5.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-t_6y26j9' 2026-03-05T13:50:57,043 Running setup.py (path:/tmp/pip-wheel-sx1btsua/biobb-dna_70426b789089442180bb1d13596578f0/setup.py) egg_info for package biobb-dna 2026-03-05T13:50:57,044 Created temporary directory: /tmp/pip-pip-egg-info-38rh4773 2026-03-05T13:50:57,045 Preparing metadata (setup.py): started 2026-03-05T13:50:57,046 Running command python setup.py egg_info 2026-03-05T13:50:57,909 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T13:50:57,909 !! 2026-03-05T13:50:57,910 ******************************************************************************** 2026-03-05T13:50:57,910 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T13:50:57,911 License :: OSI Approved :: Apache Software License 2026-03-05T13:50:57,912 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T13:50:57,913 ******************************************************************************** 2026-03-05T13:50:57,914 !! 2026-03-05T13:50:57,914 self._finalize_license_expression() 2026-03-05T13:50:57,938 running egg_info 2026-03-05T13:50:57,966 creating /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info 2026-03-05T13:50:57,967 writing /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/PKG-INFO 2026-03-05T13:50:57,970 writing dependency_links to /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/dependency_links.txt 2026-03-05T13:50:57,972 writing entry points to /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/entry_points.txt 2026-03-05T13:50:57,973 writing requirements to /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/requires.txt 2026-03-05T13:50:57,974 writing top-level names to /tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/top_level.txt 2026-03-05T13:50:57,976 writing manifest file '/tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/SOURCES.txt' 2026-03-05T13:50:58,071 reading manifest file '/tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/SOURCES.txt' 2026-03-05T13:50:58,072 adding license file 'LICENSE' 2026-03-05T13:50:58,076 writing manifest file '/tmp/pip-pip-egg-info-38rh4773/biobb_dna.egg-info/SOURCES.txt' 2026-03-05T13:50:58,184 Preparing metadata (setup.py): finished with status 'done' 2026-03-05T13:50:58,188 Source in /tmp/pip-wheel-sx1btsua/biobb-dna_70426b789089442180bb1d13596578f0 has version 5.2.1, which satisfies requirement biobb-dna==5.2.1 from https://files.pythonhosted.org/packages/c6/55/da4717d827170a36e9b2f5ade32957ccd7621bb72e5a4a27c927573d5245/biobb_dna-5.2.1.tar.gz 2026-03-05T13:50:58,189 Removed biobb-dna==5.2.1 from https://files.pythonhosted.org/packages/c6/55/da4717d827170a36e9b2f5ade32957ccd7621bb72e5a4a27c927573d5245/biobb_dna-5.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-t_6y26j9' 2026-03-05T13:50:58,195 Created temporary directory: /tmp/pip-unpack-y_umpi27 2026-03-05T13:50:58,196 Building wheels for collected packages: biobb-dna 2026-03-05T13:50:58,200 Created temporary directory: /tmp/pip-wheel-7p54yzjx 2026-03-05T13:50:58,201 Building wheel for biobb-dna (setup.py): started 2026-03-05T13:50:58,202 Destination directory: /tmp/pip-wheel-7p54yzjx 2026-03-05T13:50:58,203 Running command python setup.py bdist_wheel 2026-03-05T13:50:59,081 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-05T13:50:59,082 !! 2026-03-05T13:50:59,083 ******************************************************************************** 2026-03-05T13:50:59,085 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-05T13:50:59,088 License :: OSI Approved :: Apache Software License 2026-03-05T13:50:59,089 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-05T13:50:59,090 ******************************************************************************** 2026-03-05T13:50:59,091 !! 2026-03-05T13:50:59,091 self._finalize_license_expression() 2026-03-05T13:50:59,092 running bdist_wheel 2026-03-05T13:50:59,219 running build 2026-03-05T13:50:59,220 running build_py 2026-03-05T13:50:59,252 creating build/lib/biobb_dna 2026-03-05T13:50:59,255 copying biobb_dna/__init__.py -> build/lib/biobb_dna 2026-03-05T13:50:59,257 creating build/lib/biobb_dna/dna 2026-03-05T13:50:59,258 copying biobb_dna/dna/dna_timeseries.py -> build/lib/biobb_dna/dna 2026-03-05T13:50:59,261 copying biobb_dna/dna/dna_averages.py -> build/lib/biobb_dna/dna 2026-03-05T13:50:59,263 copying biobb_dna/dna/dna_bimodality.py -> build/lib/biobb_dna/dna 2026-03-05T13:50:59,265 copying biobb_dna/dna/__init__.py -> build/lib/biobb_dna/dna 2026-03-05T13:50:59,267 copying biobb_dna/dna/dna_timeseries_unzip.py -> build/lib/biobb_dna/dna 2026-03-05T13:50:59,270 creating build/lib/biobb_dna/utils 2026-03-05T13:50:59,271 copying biobb_dna/utils/loader.py -> build/lib/biobb_dna/utils 2026-03-05T13:50:59,272 copying biobb_dna/utils/constants.py -> build/lib/biobb_dna/utils 2026-03-05T13:50:59,274 copying biobb_dna/utils/transform.py -> build/lib/biobb_dna/utils 2026-03-05T13:50:59,276 copying biobb_dna/utils/__init__.py -> build/lib/biobb_dna/utils 2026-03-05T13:50:59,277 copying biobb_dna/utils/common.py -> build/lib/biobb_dna/utils 2026-03-05T13:50:59,279 creating build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,280 copying biobb_dna/curvesplus/biobb_curves.py -> build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,283 copying biobb_dna/curvesplus/canal_unzip.py -> build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,285 copying biobb_dna/curvesplus/__init__.py -> build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,287 copying biobb_dna/curvesplus/biobb_canion.py -> build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,289 copying biobb_dna/curvesplus/biobb_canal.py -> build/lib/biobb_dna/curvesplus 2026-03-05T13:50:59,292 creating build/lib/biobb_dna/stiffness 2026-03-05T13:50:59,293 copying biobb_dna/stiffness/basepair_stiffness.py -> build/lib/biobb_dna/stiffness 2026-03-05T13:50:59,296 copying biobb_dna/stiffness/average_stiffness.py -> build/lib/biobb_dna/stiffness 2026-03-05T13:50:59,298 copying biobb_dna/stiffness/__init__.py -> build/lib/biobb_dna/stiffness 2026-03-05T13:50:59,300 creating build/lib/biobb_dna/test 2026-03-05T13:50:59,301 copying biobb_dna/test/__init__.py -> build/lib/biobb_dna/test 2026-03-05T13:50:59,303 creating build/lib/biobb_dna/interbp_correlations 2026-03-05T13:50:59,304 copying biobb_dna/interbp_correlations/interbpcorr.py -> build/lib/biobb_dna/interbp_correlations 2026-03-05T13:50:59,307 copying biobb_dna/interbp_correlations/__init__.py -> build/lib/biobb_dna/interbp_correlations 2026-03-05T13:50:59,309 copying biobb_dna/interbp_correlations/interseqcorr.py -> build/lib/biobb_dna/interbp_correlations 2026-03-05T13:50:59,311 copying biobb_dna/interbp_correlations/interhpcorr.py -> build/lib/biobb_dna/interbp_correlations 2026-03-05T13:50:59,314 creating build/lib/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,315 copying biobb_dna/intrabp_correlations/intrabpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,318 copying biobb_dna/intrabp_correlations/intraseqcorr.py -> build/lib/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,320 copying biobb_dna/intrabp_correlations/intrahpcorr.py -> build/lib/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,322 copying biobb_dna/intrabp_correlations/__init__.py -> build/lib/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,324 creating build/lib/biobb_dna/backbone 2026-03-05T13:50:59,325 copying biobb_dna/backbone/canonicalag.py -> build/lib/biobb_dna/backbone 2026-03-05T13:50:59,328 copying biobb_dna/backbone/bipopulations.py -> build/lib/biobb_dna/backbone 2026-03-05T13:50:59,330 copying biobb_dna/backbone/puckering.py -> build/lib/biobb_dna/backbone 2026-03-05T13:50:59,333 copying biobb_dna/backbone/__init__.py -> build/lib/biobb_dna/backbone 2026-03-05T13:50:59,339 copying biobb_dna/py.typed -> build/lib/biobb_dna 2026-03-05T13:50:59,371 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-05T13:50:59,372 !! 2026-03-05T13:50:59,373 ******************************************************************************** 2026-03-05T13:50:59,373 Please avoid running ``setup.py`` directly. 2026-03-05T13:50:59,374 Instead, use pypa/build, pypa/installer or other 2026-03-05T13:50:59,374 standards-based tools. 2026-03-05T13:50:59,375 This deprecation is overdue, please update your project and remove deprecated 2026-03-05T13:50:59,376 calls to avoid build errors in the future. 2026-03-05T13:50:59,377 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-05T13:50:59,377 ******************************************************************************** 2026-03-05T13:50:59,378 !! 2026-03-05T13:50:59,379 self.initialize_options() 2026-03-05T13:50:59,399 installing to build/bdist.linux-armv7l/wheel 2026-03-05T13:50:59,399 running install 2026-03-05T13:50:59,422 running install_lib 2026-03-05T13:50:59,448 creating build/bdist.linux-armv7l/wheel 2026-03-05T13:50:59,451 creating build/bdist.linux-armv7l/wheel/biobb_dna 2026-03-05T13:50:59,452 creating build/bdist.linux-armv7l/wheel/biobb_dna/dna 2026-03-05T13:50:59,454 copying build/lib/biobb_dna/dna/dna_timeseries.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2026-03-05T13:50:59,456 copying build/lib/biobb_dna/dna/dna_averages.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2026-03-05T13:50:59,459 copying build/lib/biobb_dna/dna/dna_bimodality.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2026-03-05T13:50:59,461 copying build/lib/biobb_dna/dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2026-03-05T13:50:59,463 copying build/lib/biobb_dna/dna/dna_timeseries_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/dna 2026-03-05T13:50:59,466 creating build/bdist.linux-armv7l/wheel/biobb_dna/utils 2026-03-05T13:50:59,467 copying build/lib/biobb_dna/utils/loader.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2026-03-05T13:50:59,469 copying build/lib/biobb_dna/utils/constants.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2026-03-05T13:50:59,470 copying build/lib/biobb_dna/utils/transform.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2026-03-05T13:50:59,472 copying build/lib/biobb_dna/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2026-03-05T13:50:59,474 copying build/lib/biobb_dna/utils/common.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/utils 2026-03-05T13:50:59,476 creating build/bdist.linux-armv7l/wheel/biobb_dna/curvesplus 2026-03-05T13:50:59,477 copying build/lib/biobb_dna/curvesplus/biobb_curves.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2026-03-05T13:50:59,480 copying build/lib/biobb_dna/curvesplus/canal_unzip.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2026-03-05T13:50:59,482 copying build/lib/biobb_dna/curvesplus/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2026-03-05T13:50:59,484 copying build/lib/biobb_dna/curvesplus/biobb_canion.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2026-03-05T13:50:59,486 copying build/lib/biobb_dna/curvesplus/biobb_canal.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/curvesplus 2026-03-05T13:50:59,488 copying build/lib/biobb_dna/py.typed -> build/bdist.linux-armv7l/wheel/./biobb_dna 2026-03-05T13:50:59,490 copying build/lib/biobb_dna/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna 2026-03-05T13:50:59,492 creating build/bdist.linux-armv7l/wheel/biobb_dna/stiffness 2026-03-05T13:50:59,493 copying build/lib/biobb_dna/stiffness/basepair_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2026-03-05T13:50:59,496 copying build/lib/biobb_dna/stiffness/average_stiffness.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2026-03-05T13:50:59,498 copying build/lib/biobb_dna/stiffness/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/stiffness 2026-03-05T13:50:59,500 creating build/bdist.linux-armv7l/wheel/biobb_dna/test 2026-03-05T13:50:59,501 copying build/lib/biobb_dna/test/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/test 2026-03-05T13:50:59,504 creating build/bdist.linux-armv7l/wheel/biobb_dna/interbp_correlations 2026-03-05T13:50:59,505 copying build/lib/biobb_dna/interbp_correlations/interbpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2026-03-05T13:50:59,508 copying build/lib/biobb_dna/interbp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2026-03-05T13:50:59,510 copying build/lib/biobb_dna/interbp_correlations/interseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2026-03-05T13:50:59,513 copying build/lib/biobb_dna/interbp_correlations/interhpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/interbp_correlations 2026-03-05T13:50:59,516 creating build/bdist.linux-armv7l/wheel/biobb_dna/intrabp_correlations 2026-03-05T13:50:59,517 copying build/lib/biobb_dna/intrabp_correlations/intrabpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2026-03-05T13:50:59,520 copying build/lib/biobb_dna/intrabp_correlations/intraseqcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2026-03-05T13:50:59,522 copying build/lib/biobb_dna/intrabp_correlations/intrahpcorr.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2026-03-05T13:50:59,525 copying build/lib/biobb_dna/intrabp_correlations/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/intrabp_correlations 2026-03-05T13:50:59,527 creating build/bdist.linux-armv7l/wheel/biobb_dna/backbone 2026-03-05T13:50:59,529 copying build/lib/biobb_dna/backbone/canonicalag.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2026-03-05T13:50:59,531 copying build/lib/biobb_dna/backbone/bipopulations.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2026-03-05T13:50:59,534 copying build/lib/biobb_dna/backbone/puckering.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2026-03-05T13:50:59,536 copying build/lib/biobb_dna/backbone/__init__.py -> build/bdist.linux-armv7l/wheel/./biobb_dna/backbone 2026-03-05T13:50:59,538 running install_egg_info 2026-03-05T13:50:59,573 running egg_info 2026-03-05T13:50:59,600 writing biobb_dna.egg-info/PKG-INFO 2026-03-05T13:50:59,603 writing dependency_links to biobb_dna.egg-info/dependency_links.txt 2026-03-05T13:50:59,606 writing entry points to biobb_dna.egg-info/entry_points.txt 2026-03-05T13:50:59,608 writing requirements to biobb_dna.egg-info/requires.txt 2026-03-05T13:50:59,609 writing top-level names to biobb_dna.egg-info/top_level.txt 2026-03-05T13:50:59,646 reading manifest file 'biobb_dna.egg-info/SOURCES.txt' 2026-03-05T13:50:59,650 adding license file 'LICENSE' 2026-03-05T13:50:59,654 writing manifest file 'biobb_dna.egg-info/SOURCES.txt' 2026-03-05T13:50:59,656 Copying biobb_dna.egg-info to build/bdist.linux-armv7l/wheel/./biobb_dna-5.2.1-py3.11.egg-info 2026-03-05T13:50:59,667 running install_scripts 2026-03-05T13:50:59,680 creating build/bdist.linux-armv7l/wheel/biobb_dna-5.2.1.dist-info/WHEEL 2026-03-05T13:50:59,682 creating '/tmp/pip-wheel-7p54yzjx/biobb_dna-5.2.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T13:50:59,685 adding 'biobb_dna/__init__.py' 2026-03-05T13:50:59,687 adding 'biobb_dna/py.typed' 2026-03-05T13:50:59,688 adding 'biobb_dna/backbone/__init__.py' 2026-03-05T13:50:59,691 adding 'biobb_dna/backbone/bipopulations.py' 2026-03-05T13:50:59,693 adding 'biobb_dna/backbone/canonicalag.py' 2026-03-05T13:50:59,695 adding 'biobb_dna/backbone/puckering.py' 2026-03-05T13:50:59,697 adding 'biobb_dna/curvesplus/__init__.py' 2026-03-05T13:50:59,700 adding 'biobb_dna/curvesplus/biobb_canal.py' 2026-03-05T13:50:59,702 adding 'biobb_dna/curvesplus/biobb_canion.py' 2026-03-05T13:50:59,705 adding 'biobb_dna/curvesplus/biobb_curves.py' 2026-03-05T13:50:59,707 adding 'biobb_dna/curvesplus/canal_unzip.py' 2026-03-05T13:50:59,709 adding 'biobb_dna/dna/__init__.py' 2026-03-05T13:50:59,711 adding 'biobb_dna/dna/dna_averages.py' 2026-03-05T13:50:59,713 adding 'biobb_dna/dna/dna_bimodality.py' 2026-03-05T13:50:59,716 adding 'biobb_dna/dna/dna_timeseries.py' 2026-03-05T13:50:59,718 adding 'biobb_dna/dna/dna_timeseries_unzip.py' 2026-03-05T13:50:59,720 adding 'biobb_dna/interbp_correlations/__init__.py' 2026-03-05T13:50:59,722 adding 'biobb_dna/interbp_correlations/interbpcorr.py' 2026-03-05T13:50:59,725 adding 'biobb_dna/interbp_correlations/interhpcorr.py' 2026-03-05T13:50:59,727 adding 'biobb_dna/interbp_correlations/interseqcorr.py' 2026-03-05T13:50:59,729 adding 'biobb_dna/intrabp_correlations/__init__.py' 2026-03-05T13:50:59,732 adding 'biobb_dna/intrabp_correlations/intrabpcorr.py' 2026-03-05T13:50:59,734 adding 'biobb_dna/intrabp_correlations/intrahpcorr.py' 2026-03-05T13:50:59,737 adding 'biobb_dna/intrabp_correlations/intraseqcorr.py' 2026-03-05T13:50:59,739 adding 'biobb_dna/stiffness/__init__.py' 2026-03-05T13:50:59,741 adding 'biobb_dna/stiffness/average_stiffness.py' 2026-03-05T13:50:59,743 adding 'biobb_dna/stiffness/basepair_stiffness.py' 2026-03-05T13:50:59,745 adding 'biobb_dna/test/__init__.py' 2026-03-05T13:50:59,747 adding 'biobb_dna/utils/__init__.py' 2026-03-05T13:50:59,748 adding 'biobb_dna/utils/common.py' 2026-03-05T13:50:59,750 adding 'biobb_dna/utils/constants.py' 2026-03-05T13:50:59,752 adding 'biobb_dna/utils/loader.py' 2026-03-05T13:50:59,753 adding 'biobb_dna/utils/transform.py' 2026-03-05T13:50:59,757 adding 'biobb_dna-5.2.1.dist-info/licenses/LICENSE' 2026-03-05T13:50:59,759 adding 'biobb_dna-5.2.1.dist-info/METADATA' 2026-03-05T13:50:59,760 adding 'biobb_dna-5.2.1.dist-info/WHEEL' 2026-03-05T13:50:59,762 adding 'biobb_dna-5.2.1.dist-info/entry_points.txt' 2026-03-05T13:50:59,763 adding 'biobb_dna-5.2.1.dist-info/top_level.txt' 2026-03-05T13:50:59,765 adding 'biobb_dna-5.2.1.dist-info/RECORD' 2026-03-05T13:50:59,768 removing build/bdist.linux-armv7l/wheel 2026-03-05T13:50:59,889 Building wheel for biobb-dna (setup.py): finished with status 'done' 2026-03-05T13:50:59,893 Created wheel for biobb-dna: filename=biobb_dna-5.2.1-py3-none-any.whl size=74915 sha256=75318606b9bdc39f7bea657a3fd73affda69cf444d3800927bf11f83e9a5409f 2026-03-05T13:50:59,894 Stored in directory: /tmp/pip-ephem-wheel-cache-dmozp2mr/wheels/d7/93/5f/cd371496e275e869f5756b114444fe4455a073b3db1693581d 2026-03-05T13:50:59,906 Successfully built biobb-dna 2026-03-05T13:50:59,911 Removed build tracker: '/tmp/pip-build-tracker-t_6y26j9'