2026-03-05T14:58:23,673 Created temporary directory: /tmp/pip-build-tracker-cc9ipmq9
2026-03-05T14:58:23,673 Initialized build tracking at /tmp/pip-build-tracker-cc9ipmq9
2026-03-05T14:58:23,674 Created build tracker: /tmp/pip-build-tracker-cc9ipmq9
2026-03-05T14:58:23,674 Entered build tracker: /tmp/pip-build-tracker-cc9ipmq9
2026-03-05T14:58:23,674 Created temporary directory: /tmp/pip-wheel-nqkevd_l
2026-03-05T14:58:23,677 Created temporary directory: /tmp/pip-ephem-wheel-cache-sstdllil
2026-03-05T14:58:23,737 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-05T14:58:23,739 2 location(s) to search for versions of kssdutils:
2026-03-05T14:58:23,739 * https://pypi.org/simple/kssdutils/
2026-03-05T14:58:23,739 * https://www.piwheels.org/simple/kssdutils/
2026-03-05T14:58:23,739 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/
2026-03-05T14:58:23,740 Getting page https://pypi.org/simple/kssdutils/
2026-03-05T14:58:23,741 Found index url https://pypi.org/simple/
2026-03-05T14:58:23,809 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json
2026-03-05T14:58:23,811   Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0
2026-03-05T14:58:23,812   Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1
2026-03-05T14:58:23,812   Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2
2026-03-05T14:58:23,812   Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3
2026-03-05T14:58:23,812   Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5
2026-03-05T14:58:23,813   Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6
2026-03-05T14:58:23,813   Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7
2026-03-05T14:58:23,813   Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0
2026-03-05T14:58:23,813   Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2
2026-03-05T14:58:23,813   Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3
2026-03-05T14:58:23,814   Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4
2026-03-05T14:58:23,814   Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5
2026-03-05T14:58:23,814   Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.7
2026-03-05T14:58:23,814   Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.8
2026-03-05T14:58:23,814   Found link https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.9
2026-03-05T14:58:23,815 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/
2026-03-05T14:58:23,815 Getting page https://www.piwheels.org/simple/kssdutils/
2026-03-05T14:58:23,816 Found index url https://www.piwheels.org/simple/
2026-03-05T14:58:23,903 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html
2026-03-05T14:58:23,914   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,914   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,914   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,914   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,914   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,915   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,916   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,917   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,918   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,919   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,920   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,921   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,921   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,921   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,921   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T14:58:23,921 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/
2026-03-05T14:58:23,921 Skipping link: not a file: https://pypi.org/simple/kssdutils/
2026-03-05T14:58:23,947 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates
2026-03-05T14:58:23,948 Collecting kssdutils==1.1.9
2026-03-05T14:58:23,949   Created temporary directory: /tmp/pip-unpack-gj5wd333
2026-03-05T14:58:24,010   Downloading kssdutils-1.1.9.tar.gz (44 kB)
2026-03-05T14:58:24,059   Added kssdutils==1.1.9 from https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz to build tracker '/tmp/pip-build-tracker-cc9ipmq9'
2026-03-05T14:58:24,060   Running setup.py (path:/tmp/pip-wheel-nqkevd_l/kssdutils_dc7854f5393f4d6eb43ea06ed182044b/setup.py) egg_info for package kssdutils
2026-03-05T14:58:24,061   Created temporary directory: /tmp/pip-pip-egg-info-4yctv3b5
2026-03-05T14:58:24,061   Preparing metadata (setup.py): started
2026-03-05T14:58:24,062   Running command python setup.py egg_info
2026-03-05T14:58:25,259   running egg_info
2026-03-05T14:58:25,333   creating /tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info
2026-03-05T14:58:25,333   writing /tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/PKG-INFO
2026-03-05T14:58:25,334   writing dependency_links to /tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/dependency_links.txt
2026-03-05T14:58:25,335   writing top-level names to /tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/top_level.txt
2026-03-05T14:58:25,336   writing manifest file '/tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/SOURCES.txt'
2026-03-05T14:58:25,555   reading manifest file '/tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/SOURCES.txt'
2026-03-05T14:58:25,556   reading manifest template 'MANIFEST.in'
2026-03-05T14:58:25,560   writing manifest file '/tmp/pip-pip-egg-info-4yctv3b5/kssdutils.egg-info/SOURCES.txt'
2026-03-05T14:58:25,673   Preparing metadata (setup.py): finished with status 'done'
2026-03-05T14:58:25,677   Source in /tmp/pip-wheel-nqkevd_l/kssdutils_dc7854f5393f4d6eb43ea06ed182044b has version 1.1.9, which satisfies requirement kssdutils==1.1.9 from https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz
2026-03-05T14:58:25,678   Removed kssdutils==1.1.9 from https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz from build tracker '/tmp/pip-build-tracker-cc9ipmq9'
2026-03-05T14:58:25,680 Created temporary directory: /tmp/pip-unpack-29koel11
2026-03-05T14:58:25,681 Created temporary directory: /tmp/pip-unpack-72mxexyu
2026-03-05T14:58:25,681 Building wheels for collected packages: kssdutils
2026-03-05T14:58:25,682   Created temporary directory: /tmp/pip-wheel-vx6sm9na
2026-03-05T14:58:25,682   DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334
2026-03-05T14:58:25,683   Building wheel for kssdutils (setup.py): started
2026-03-05T14:58:25,684   Destination directory: /tmp/pip-wheel-vx6sm9na
2026-03-05T14:58:25,684   Running command python setup.py bdist_wheel
2026-03-05T14:58:26,776   running bdist_wheel
2026-03-05T14:58:27,072   running build
2026-03-05T14:58:27,072   running build_py
2026-03-05T14:58:27,148   creating build/lib.linux-armv7l-cpython-313
2026-03-05T14:58:27,148   copying kssdutils.py -> build/lib.linux-armv7l-cpython-313
2026-03-05T14:58:27,149   running egg_info
2026-03-05T14:58:27,222   writing kssdutils.egg-info/PKG-INFO
2026-03-05T14:58:27,223   writing dependency_links to kssdutils.egg-info/dependency_links.txt
2026-03-05T14:58:27,224   writing top-level names to kssdutils.egg-info/top_level.txt
2026-03-05T14:58:27,297   reading manifest file 'kssdutils.egg-info/SOURCES.txt'
2026-03-05T14:58:27,299   reading manifest template 'MANIFEST.in'
2026-03-05T14:58:27,304   writing manifest file 'kssdutils.egg-info/SOURCES.txt'
2026-03-05T14:58:27,304   running build_ext
2026-03-05T14:58:27,819   building 'kssdtool' extension
2026-03-05T14:58:27,822   creating build/temp.linux-armv7l-cpython-313
2026-03-05T14:58:27,823   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp
2026-03-05T14:58:28,011   co2mco.c: In function ‘cdb_kmerf2kmerdb’:
2026-03-05T14:58:28,011   co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2026-03-05T14:58:28,011     109 |     for (unsigned int i = 0; i < comp_num; i++) {
2026-03-05T14:58:28,011         |                                ^
2026-03-05T14:58:28,015   co2mco.c: In function ‘co2unitllmco’:
2026-03-05T14:58:28,015   co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2026-03-05T14:58:28,015     191 |     for (unsigned int i = 0; i < bin_sz; i++) {
2026-03-05T14:58:28,015         |                                ^
2026-03-05T14:58:28,705   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp
2026-03-05T14:58:29,096   command_composite.c: In function ‘get_species_abundance’:
2026-03-05T14:58:29,096   command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
2026-03-05T14:58:29,096      32 |     if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath);
2026-03-05T14:58:29,096         |                                                                        ^~
2026-03-05T14:58:29,096   command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
2026-03-05T14:58:29,096      34 |     if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath);
2026-03-05T14:58:29,096         |                                                                        ^~
2026-03-05T14:58:29,096   command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:29,097      64 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c);
2026-03-05T14:58:29,097         |                                     ^
2026-03-05T14:58:29,097   command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:29,097      64 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c);
2026-03-05T14:58:29,097         |                               ^~~~~~~~~~
2026-03-05T14:58:29,097   command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256
2026-03-05T14:58:29,097      64 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c);
2026-03-05T14:58:29,097         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,097   command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:29,097      70 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c);
2026-03-05T14:58:29,097         |                                     ^
2026-03-05T14:58:29,098   command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:29,098      70 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c);
2026-03-05T14:58:29,098         |                               ^~~~~~~~~~
2026-03-05T14:58:29,098   command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256
2026-03-05T14:58:29,098      70 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c);
2026-03-05T14:58:29,098         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,098   command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:29,098      76 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,098         |                                     ^
2026-03-05T14:58:29,098   command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:29,099      76 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,099         |                               ^~~~~~~~~~
2026-03-05T14:58:29,099   command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256
2026-03-05T14:58:29,099      76 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,099         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,099   command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:29,099      82 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c);
2026-03-05T14:58:29,099         |                                     ^
2026-03-05T14:58:29,099   command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:29,099      82 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c);
2026-03-05T14:58:29,100         |                               ^~~~~~~~~~
2026-03-05T14:58:29,100   command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256
2026-03-05T14:58:29,100      82 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c);
2026-03-05T14:58:29,100         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,100   command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:29,100      88 |             sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,100         |                                     ^
2026-03-05T14:58:29,100   command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:29,100      88 |             sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,100         |                               ^~~~~~~~~~~~
2026-03-05T14:58:29,101   command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256
2026-03-05T14:58:29,101      88 |             sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c);
2026-03-05T14:58:29,101         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,342   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp
2026-03-05T14:58:29,584   command_dist.c: In function ‘mco_cbd_co_dist’:
2026-03-05T14:58:29,586   command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,586     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,586         |                         ~~^
2026-03-05T14:58:29,586         |                           |
2026-03-05T14:58:29,586         |                           long unsigned int
2026-03-05T14:58:29,587         |                         %u
2026-03-05T14:58:29,587     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,587         |                ~~~~~~~
2026-03-05T14:58:29,587         |                |
2026-03-05T14:58:29,587         |                size_t {aka unsigned int}
2026-03-05T14:58:29,589   command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,589     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,589         |                                                                                          ~~^
2026-03-05T14:58:29,589         |                                                                                            |
2026-03-05T14:58:29,589         |                                                                                            long unsigned int
2026-03-05T14:58:29,589         |                                                                                          %u
2026-03-05T14:58:29,590     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,590     679 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T14:58:29,590         |                ~~~~~~~~~
2026-03-05T14:58:29,590         |                |
2026-03-05T14:58:29,590         |                size_t {aka unsigned int}
2026-03-05T14:58:29,592   command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T14:58:29,592     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,592         |                                                                                               ~~^
2026-03-05T14:58:29,592         |                                                                                                 |
2026-03-05T14:58:29,592         |                                                                                                 long unsigned int
2026-03-05T14:58:29,592         |                                                                                               %u
2026-03-05T14:58:29,592     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,593     679 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T14:58:29,593         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,593         |                                      |
2026-03-05T14:58:29,593         |                                      unsigned int
2026-03-05T14:58:29,596   command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T14:58:29,596     715 |                 for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) {
2026-03-05T14:58:29,597         |                                   ^
2026-03-05T14:58:29,604   command_dist.c: In function ‘mco_cbdco_nobin_dist’:
2026-03-05T14:58:29,606   command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,607     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T14:58:29,607         |                         ~~^                                                                            ~~~~~~~
2026-03-05T14:58:29,607         |                           |                                                                            |
2026-03-05T14:58:29,607         |                           long unsigned int                                                            size_t {aka unsigned int}
2026-03-05T14:58:29,607         |                         %u
2026-03-05T14:58:29,609   command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,610     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T14:58:29,610         |                                                                                           ~~^
2026-03-05T14:58:29,610         |                                                                                             |
2026-03-05T14:58:29,610         |                                                                                             long unsigned int
2026-03-05T14:58:29,610         |                                                                                           %u
2026-03-05T14:58:29,610     864 |                mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength,
2026-03-05T14:58:29,610         |                                                                                                         ~~~~~~~~~
2026-03-05T14:58:29,610         |                                                                                                         |
2026-03-05T14:58:29,610         |                                                                                                         size_t {aka unsigned int}
2026-03-05T14:58:29,613   command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T14:58:29,613     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T14:58:29,613         |                                                                                                ~~^
2026-03-05T14:58:29,613         |                                                                                                  |
2026-03-05T14:58:29,613         |                                                                                                  long unsigned int
2026-03-05T14:58:29,613         |                                                                                                %u
2026-03-05T14:58:29,613     864 |                mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength,
2026-03-05T14:58:29,614     865 |                (size_t) b * unitsz_distf_mapped);
2026-03-05T14:58:29,614         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,614         |                           |
2026-03-05T14:58:29,614         |                           unsigned int
2026-03-05T14:58:29,616   command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable]
2026-03-05T14:58:29,616     810 |     size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1));
2026-03-05T14:58:29,616         |             ^~~~~~~
2026-03-05T14:58:29,617   command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable]
2026-03-05T14:58:29,617     809 |     struct stat cbd_fcode_stat;
2026-03-05T14:58:29,617         |                 ^~~~~~~~~~~~~~
2026-03-05T14:58:29,618   command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable]
2026-03-05T14:58:29,618     808 |     FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp;
2026-03-05T14:58:29,618         |                               ^~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,619   command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable]
2026-03-05T14:58:29,619     808 |     FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp;
2026-03-05T14:58:29,619         |           ^~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,626   command_dist.c: In function ‘mco_cbd_koc_compatible_dist’:
2026-03-05T14:58:29,629   command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,629    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,629         |                         ~~^
2026-03-05T14:58:29,629         |                           |
2026-03-05T14:58:29,629         |                           long unsigned int
2026-03-05T14:58:29,629         |                         %u
2026-03-05T14:58:29,630    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,630         |                ~~~~~~~
2026-03-05T14:58:29,630         |                |
2026-03-05T14:58:29,630         |                size_t {aka unsigned int}
2026-03-05T14:58:29,633   command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:29,633    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,633         |                                                                                          ~~^
2026-03-05T14:58:29,633         |                                                                                            |
2026-03-05T14:58:29,633         |                                                                                            long unsigned int
2026-03-05T14:58:29,633         |                                                                                          %u
2026-03-05T14:58:29,634    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,634    1020 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T14:58:29,634         |                ~~~~~~~~~
2026-03-05T14:58:29,634         |                |
2026-03-05T14:58:29,634         |                size_t {aka unsigned int}
2026-03-05T14:58:29,637   command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T14:58:29,637    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T14:58:29,637         |                                                                                               ~~^
2026-03-05T14:58:29,637         |                                                                                                 |
2026-03-05T14:58:29,637         |                                                                                                 long unsigned int
2026-03-05T14:58:29,637         |                                                                                               %u
2026-03-05T14:58:29,637    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T14:58:29,638    1020 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T14:58:29,638         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:29,638         |                                      |
2026-03-05T14:58:29,638         |                                      unsigned int
2026-03-05T14:58:29,644   command_dist.c: In function ‘mco_co_dist_core’:
2026-03-05T14:58:29,646   command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T14:58:29,646    1116 |             for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) {
2026-03-05T14:58:29,646         |                               ^
2026-03-05T14:58:29,648   command_dist.c: In function ‘fname_dist_print’:
2026-03-05T14:58:29,649   command_dist.c:1163:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare]
2026-03-05T14:58:29,650    1163 |     for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) {
2026-03-05T14:58:29,650         |                         ^
2026-03-05T14:58:29,655   command_dist.c: In function ‘koc_dist_print_nobin’:
2026-03-05T14:58:29,656   command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T14:58:29,656    1239 |             for (int rid = 0; rid < ref_num; rid++)
2026-03-05T14:58:29,656         |                                   ^
2026-03-05T14:58:29,658   command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T14:58:29,659    1245 |             for (int rid = 0; rid < ref_num; rid++) {
2026-03-05T14:58:29,659         |                                   ^
2026-03-05T14:58:29,664   command_dist.c: In function ‘dist_print_nobin’:
2026-03-05T14:58:29,666   command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T14:58:29,666    1335 |     if ((N_max > NREF) || (N_max > ref_num)) {
2026-03-05T14:58:29,666         |                                  ^
2026-03-05T14:58:29,669   command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T14:58:29,669    1356 |                 for (int rid = 0; rid < ref_num; rid++) {
2026-03-05T14:58:29,669         |                                       ^
2026-03-05T14:58:29,671   command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T14:58:29,672    1382 |                 for (int rid = 0; rid < ref_num; rid++)
2026-03-05T14:58:29,672         |                                       ^
2026-03-05T14:58:30,059   command_dist.c: In function ‘run_stageI._omp_fn.1’:
2026-03-05T14:58:30,060   command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized]
2026-03-05T14:58:30,060     403 |                     fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp);
2026-03-05T14:58:30,060         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:30,060   command_dist.c:375:40: note: ‘com_abund_fp’ was declared here
2026-03-05T14:58:30,060     375 |             FILE *com_cofp, *indexfp, *com_abund_fp;
2026-03-05T14:58:30,060         |                                        ^~~~~~~~~~~~
2026-03-05T14:58:30,866   command_dist.c: In function ‘get_dim_shuffle’:
2026-03-05T14:58:30,866   command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=]
2026-03-05T14:58:30,867     267 |         sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix);
2026-03-05T14:58:30,867         |                                    ^~        ~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:30,867   command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256
2026-03-05T14:58:30,867     267 |         sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix);
2026-03-05T14:58:30,867         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:31,784   command_dist.c: In function ‘mco_cbd_co_dist’:
2026-03-05T14:58:31,785   command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:31,785     596 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:31,785         |                                     ^~                 ~~~~~~~~~
2026-03-05T14:58:31,786   command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T14:58:31,786     596 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:31,786         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:31,787   command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:31,787     625 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:31,787         |                         ^~~~~~~~~~~~~~~
2026-03-05T14:58:31,788   command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T14:58:31,788     625 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:31,788         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:31,790   command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:31,790     681 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:31,790         |                                         ^~~~~~~~~~~
2026-03-05T14:58:31,791   command_dist.c:681:38: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:31,791     681 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:31,791         |                                      ^~~~~~~~~~~~~~~~~
2026-03-05T14:58:31,792   command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256
2026-03-05T14:58:31,792     681 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:31,792         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:31,793   command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:31,793     682 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:31,793         |                                   ^~~~~
2026-03-05T14:58:31,794   command_dist.c:682:32: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:31,794     682 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:31,794         |                                ^~~~~~~~~~~
2026-03-05T14:58:31,794   command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T14:58:31,794     682 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:31,795         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,042   command_dist.c: In function ‘mco_cbdco_nobin_dist’:
2026-03-05T14:58:32,043   command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:32,043     763 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:32,043         |                                     ^~                 ~~~~~~~~~
2026-03-05T14:58:32,044   command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T14:58:32,044     763 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:32,044         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,045   command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,046     790 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:32,046         |                         ^~~~~~~~~~~~~~~
2026-03-05T14:58:32,047   command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T14:58:32,047     790 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:32,047         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,048   command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,048     823 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T14:58:32,048         |                       ^~~~~~~~~~~~~
2026-03-05T14:58:32,049   command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T14:58:32,049     823 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T14:58:32,049         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,050   command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:32,050     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T14:58:32,050         |                                       ^
2026-03-05T14:58:32,051   command_dist.c:849:33: note: directive argument in the range [0, 536870912]
2026-03-05T14:58:32,051     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T14:58:32,052         |                                 ^~~~~~~~~~
2026-03-05T14:58:32,052   command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256
2026-03-05T14:58:32,053     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T14:58:32,053         |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,054   command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:32,054     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T14:58:32,054         |                                  ^
2026-03-05T14:58:32,055   command_dist.c:851:28: note: directive argument in the range [0, 536870912]
2026-03-05T14:58:32,055     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T14:58:32,055         |                            ^~~~~~~~~~
2026-03-05T14:58:32,056   command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256
2026-03-05T14:58:32,056     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T14:58:32,056         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,322   command_dist.c: In function ‘mco_cbd_koc_compatible_dist’:
2026-03-05T14:58:32,324   command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:32,324     927 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:32,324         |                                     ^~                 ~~~~~~~~~
2026-03-05T14:58:32,325   command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T14:58:32,325     927 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T14:58:32,326         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,327   command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,327     956 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:32,327         |                         ^~~~~~~~~~~~~~~
2026-03-05T14:58:32,328   command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T14:58:32,328     956 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T14:58:32,328         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,330   command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,330     990 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T14:58:32,330         |                       ^~~~~~~~~~~~~
2026-03-05T14:58:32,331   command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T14:58:32,331     990 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T14:58:32,331         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,333   command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,333    1022 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:32,333         |                                         ^~~~~~~~~~~
2026-03-05T14:58:32,335   command_dist.c:1022:38: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:32,335    1022 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:32,335         |                                      ^~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,336   command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256
2026-03-05T14:58:32,336    1022 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T14:58:32,336         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,337   command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T14:58:32,337    1023 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:32,337         |                                   ^~~~~
2026-03-05T14:58:32,339   command_dist.c:1023:32: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:32,339    1023 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:32,339         |                                ^~~~~~~~~~~
2026-03-05T14:58:32,340   command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T14:58:32,340    1023 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T14:58:32,340         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,617   command_dist.c: In function ‘combine_queries’:
2026-03-05T14:58:32,618   command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:32,619    1492 |     sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname);
2026-03-05T14:58:32,619         |                                         ^
2026-03-05T14:58:32,620   command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:32,620    1492 |     sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname);
2026-03-05T14:58:32,621         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,622   command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:32,622    1499 |     sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname);
2026-03-05T14:58:32,623         |                                        ^
2026-03-05T14:58:32,624   command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:32,624    1499 |     sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname);
2026-03-05T14:58:32,625         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:32,628   command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:32,628    1603 |     sprintf(one_stat_name, "%s/%s", co_dir, co_dstat);
2026-03-05T14:58:32,628         |                                ^~           ~~~~~~~~
2026-03-05T14:58:32,630   command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T14:58:32,630    1603 |     sprintf(one_stat_name, "%s/%s", co_dir, co_dstat);
2026-03-05T14:58:32,630         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,112   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp
2026-03-05T14:58:33,286   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp
2026-03-05T14:58:33,459   command_set.c: In function ‘sketch_operate’:
2026-03-05T14:58:33,459   command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T14:58:33,460     178 |             for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){
2026-03-05T14:58:33,460         |                              ^
2026-03-05T14:58:33,471   command_set.c: In function ‘combin_subset_pans’:
2026-03-05T14:58:33,472   command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-03-05T14:58:33,472     457 |     free(co_dstat_fpath);
2026-03-05T14:58:33,472         |          ^~~~~~~~~~~~~~
2026-03-05T14:58:33,472   In file included from kssdheaders/global_basic.h:159,
2026-03-05T14:58:33,473                    from command_set.c:15:
2026-03-05T14:58:33,473   /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
2026-03-05T14:58:33,473     687 | extern void free (void *__ptr) __THROW;
2026-03-05T14:58:33,473         |                   ~~~~~~^~~~~
2026-03-05T14:58:33,479   command_set.c: In function ‘grouping_genomes’:
2026-03-05T14:58:33,479   command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-03-05T14:58:33,480     562 |     free(co_dstat_fpath);
2026-03-05T14:58:33,480         |          ^~~~~~~~~~~~~~
2026-03-05T14:58:33,480   /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’
2026-03-05T14:58:33,480     687 | extern void free (void *__ptr) __THROW;
2026-03-05T14:58:33,480         |                   ~~~~~~^~~~~
2026-03-05T14:58:33,656   command_set.c: In function ‘sketch_union’:
2026-03-05T14:58:33,656   command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:33,656      71 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,656         |                           ^
2026-03-05T14:58:33,657   command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:33,657      71 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,657         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,657   command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,657      82 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,657         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:33,657   command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,657      82 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,657         |                         ^~~~~~~~~~
2026-03-05T14:58:33,657   command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:33,658      82 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,658         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,658   command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,658      92 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i);
2026-03-05T14:58:33,658         |                             ^~                    ~~~~~~~~~~
2026-03-05T14:58:33,658   command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,658      92 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i);
2026-03-05T14:58:33,658         |                         ^~~~~~~~~~
2026-03-05T14:58:33,658   command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T14:58:33,658      92 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i);
2026-03-05T14:58:33,659         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,788   command_set.c: In function ‘sketch_operate’:
2026-03-05T14:58:33,788   command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,788     153 |         sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c);
2026-03-05T14:58:33,789         |                             ^~                            ~~~~~~~~~~
2026-03-05T14:58:33,789   command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,789     153 |         sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c);
2026-03-05T14:58:33,789         |                         ^~~~~~~~~~
2026-03-05T14:58:33,789   command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T14:58:33,789     153 |         sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c);
2026-03-05T14:58:33,789         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,789   command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,789     155 |             sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c);
2026-03-05T14:58:33,789         |                                 ^~                            ~~~~~~~~~~~~~~~
2026-03-05T14:58:33,790   command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,790     155 |             sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c);
2026-03-05T14:58:33,790         |                             ^~~~~~~~~~
2026-03-05T14:58:33,790   command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256
2026-03-05T14:58:33,790     155 |             sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c);
2026-03-05T14:58:33,790         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,790   command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,790     165 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,790         |                             ^~                                ~~~~~~~~~~~
2026-03-05T14:58:33,790   command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,790     165 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,791         |                         ^~~~~~~~~~~~~~~~
2026-03-05T14:58:33,791   command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:33,791     165 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,791         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,791   command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,791     169 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,791         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:33,791   command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,791     169 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,791         |                         ^~~~~~~~~~
2026-03-05T14:58:33,791   command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:33,792     169 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T14:58:33,792         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,792   command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,792     174 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,792         |                             ^~                    ~~~~~~~~~~~
2026-03-05T14:58:33,792   command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,792     174 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,792         |                         ^~~~~~~~~~
2026-03-05T14:58:33,792   command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:33,792     174 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,792         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,793   command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,793     187 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,793         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:33,793   command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,793     187 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,793         |                         ^~~~~~~~~~~~~~~~
2026-03-05T14:58:33,793   command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:33,793     187 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T14:58:33,793         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,793   command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:33,794     192 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,794         |                           ^
2026-03-05T14:58:33,794   command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:33,794     192 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,794         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,960   command_set.c: In function ‘uniq_sketch_union’:
2026-03-05T14:58:33,960   command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:33,960     219 |                 sprintf(unionco,"%s.%d",uniq_pan_prefix,i);
2026-03-05T14:58:33,960         |                                       ^
2026-03-05T14:58:33,961   command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20
2026-03-05T14:58:33,961     219 |                 sprintf(unionco,"%s.%d",uniq_pan_prefix,i);
2026-03-05T14:58:33,961         |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,961   command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:33,961     234 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,961         |                           ^
2026-03-05T14:58:33,961   command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:33,961     234 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:33,961         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,962   command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,962     247 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,962         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:33,962   command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,962     247 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,962         |                         ^~~~~~~~~~
2026-03-05T14:58:33,962   command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:33,963     247 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T14:58:33,963         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:33,963   command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:33,963     259 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i);
2026-03-05T14:58:33,963         |                             ^~                    ~~~~~~~~~~~~~~~
2026-03-05T14:58:33,963   command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:33,963     259 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i);
2026-03-05T14:58:33,964         |                         ^~~~~~~~~~
2026-03-05T14:58:33,964   command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256
2026-03-05T14:58:33,964     259 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i);
2026-03-05T14:58:33,964         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,105   command_set.c: In function ‘combin_pans’:
2026-03-05T14:58:34,105   command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,105     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,105         |                             ^~                    ~~~~~~~~~~~
2026-03-05T14:58:34,106   command_set.c:297:25: note: directive argument in the range [0, 1073741823]
2026-03-05T14:58:34,106     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,106         |                         ^~~~~~~~~~
2026-03-05T14:58:34,106   command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256
2026-03-05T14:58:34,106     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,106         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,107   command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,107     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,107         |                             ^~                    ~~~~~~~~~~
2026-03-05T14:58:34,107   command_set.c:300:25: note: directive argument in the range [0, 1073741823]
2026-03-05T14:58:34,107     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,107         |                         ^~~~~~~~~~
2026-03-05T14:58:34,107   command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256
2026-03-05T14:58:34,107     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,108         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,108   command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:34,108     342 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,109         |                           ^
2026-03-05T14:58:34,109   command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:34,109     342 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,109         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,326   command_set.c: In function ‘combin_subset_pans’:
2026-03-05T14:58:34,326   command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,327     469 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,327         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:34,327   command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,327     469 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,327         |                         ^~~~~~~~~~
2026-03-05T14:58:34,328   command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:34,328     469 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,328         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,329   command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,329     475 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,329         |                             ^~                          ~~~~~~~~~~
2026-03-05T14:58:34,329   command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,329     475 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,329         |                         ^~~~~~~~~~
2026-03-05T14:58:34,330   command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:34,330     475 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,330         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,331   command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,331     481 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,331         |                             ^~                    ~~~~~~~~~~~
2026-03-05T14:58:34,331   command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,331     481 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,332         |                         ^~~~~~~~~~
2026-03-05T14:58:34,332   command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:34,332     481 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,332         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,333   command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,333     512 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,333         |                             ^~                    ~~~~~~~~~~
2026-03-05T14:58:34,334   command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,334     512 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,334         |                         ^~~~~~~~~~
2026-03-05T14:58:34,334   command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:34,334     512 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,335         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,335   command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:34,335     523 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,335         |                           ^
2026-03-05T14:58:34,336   command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:34,336     523 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,336         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,571   command_set.c: In function ‘grouping_genomes’:
2026-03-05T14:58:34,572   command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,572     574 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,572         |                             ^~                          ~~~~~~~~~~~
2026-03-05T14:58:34,573   command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,573     574 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,573         |                         ^~~~~~~~~~
2026-03-05T14:58:34,574   command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:34,574     574 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T14:58:34,574         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,575   command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,575     580 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,575         |                             ^~                          ~~~~~~~~~~
2026-03-05T14:58:34,576   command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,576     580 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,576         |                         ^~~~~~~~~~
2026-03-05T14:58:34,576   command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:34,576     580 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T14:58:34,577         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,578   command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,578     612 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,578         |                             ^~                    ~~~~~~~~~~~
2026-03-05T14:58:34,579   command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,579     612 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,579         |                         ^~~~~~~~~~
2026-03-05T14:58:34,579   command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T14:58:34,579     612 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T14:58:34,580         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,581   command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T14:58:34,581     634 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,581         |                             ^~                    ~~~~~~~~~~
2026-03-05T14:58:34,581   command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646]
2026-03-05T14:58:34,582     634 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,582         |                         ^~~~~~~~~~
2026-03-05T14:58:34,582   command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T14:58:34,582     634 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T14:58:34,582         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,583   command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T14:58:34,583     645 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,583         |                           ^
2026-03-05T14:58:34,584   command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T14:58:34,584     645 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T14:58:34,584         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T14:58:34,866   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp
2026-03-05T14:58:35,177   arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp
2026-03-05T14:58:35,358   global_basic.c: In function ‘organize_infile_list’:
2026-03-05T14:58:35,358   global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration]
2026-03-05T14:58:35,358     195 |             while (isspace(*buf)) buf++;
2026-03-05T14:58:35,358         |                    ^~~~~~~
2026-03-05T14:58:35,358   global_basic.c:35:1: note: include ‘<ctype.h>’ or provide a declaration of ‘isspace’
2026-03-05T14:58:35,358      34 | #include <math.h>
2026-03-05T14:58:35,358     +++ |+#include <ctype.h>
2026-03-05T14:58:35,358      35 |
2026-03-05T14:58:35,359   global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:35,359     201 |                         "the input list: %s\n %dth line:  %s  has %lu characters exceed the maximal allowed length %d",
2026-03-05T14:58:35,359         |                                                                   ~~^
2026-03-05T14:58:35,359         |                                                                     |
2026-03-05T14:58:35,359         |                                                                     long unsigned int
2026-03-05T14:58:35,359         |                                                                   %u
2026-03-05T14:58:35,359     202 |                         list_path, file_num, buf, strlen(buf), PATHLEN);
2026-03-05T14:58:35,359         |                                                   ~~~~~~~~~~~
2026-03-05T14:58:35,359         |                                                   |
2026-03-05T14:58:35,360         |                                                   size_t {aka unsigned int}
2026-03-05T14:58:35,360   global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T14:58:35,360     233 |                         "the input list: %s\n %dth line:  %s  has %lu characters exceed the maximal allowed length %d",
2026-03-05T14:58:35,361         |                                                                   ~~^
2026-03-05T14:58:35,361         |                                                                     |
2026-03-05T14:58:35,361         |                                                                     long unsigned int
2026-03-05T14:58:35,361         |                                                                   %u
2026-03-05T14:58:35,361     234 |                         list_path, file_num, buf, strlen(buf), PATHLEN);
2026-03-05T14:58:35,361         |                                                   ~~~~~~~~~~~
2026-03-05T14:58:35,361         |                                                   |
2026-03-05T14:58:35,361         |                                                   size_t {aka unsigned int}
2026-03-05T14:58:35,384   error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1
2026-03-05T14:58:35,541   ERROR: python setup.py bdist_wheel exited with 1
2026-03-05T14:58:35,553   [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c '
2026-03-05T14:58:35,553   exec(compile('"'"''"'"''"'"'
2026-03-05T14:58:35,553   # This is <pip-setuptools-caller> -- a caller that pip uses to run setup.py
2026-03-05T14:58:35,553   #
2026-03-05T14:58:35,553   # - It imports setuptools before invoking setup.py, to enable projects that directly
2026-03-05T14:58:35,553   #   import from `distutils.core` to work with newer packaging standards.
2026-03-05T14:58:35,553   # - It provides a clear error message when setuptools is not installed.
2026-03-05T14:58:35,553   # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so
2026-03-05T14:58:35,553   #   setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning:
2026-03-05T14:58:35,553   #     manifest_maker: standard file '"'"'-c'"'"' not found".
2026-03-05T14:58:35,553   # - It generates a shim setup.py, for handling setup.cfg-only projects.
2026-03-05T14:58:35,553   import os, sys, tokenize, traceback
2026-03-05T14:58:35,553   
2026-03-05T14:58:35,553   try:
2026-03-05T14:58:35,553       import setuptools
2026-03-05T14:58:35,553   except ImportError:
2026-03-05T14:58:35,553       print(
2026-03-05T14:58:35,553           "ERROR: Can not execute `setup.py` since setuptools failed to import in "
2026-03-05T14:58:35,553           "the build environment with exception:",
2026-03-05T14:58:35,553           file=sys.stderr,
2026-03-05T14:58:35,553       )
2026-03-05T14:58:35,553       traceback.print_exc()
2026-03-05T14:58:35,553       sys.exit(1)
2026-03-05T14:58:35,553   
2026-03-05T14:58:35,553   __file__ = %r
2026-03-05T14:58:35,553   sys.argv[0] = __file__
2026-03-05T14:58:35,553   
2026-03-05T14:58:35,553   if os.path.exists(__file__):
2026-03-05T14:58:35,553       filename = __file__
2026-03-05T14:58:35,553       with tokenize.open(__file__) as f:
2026-03-05T14:58:35,553           setup_py_code = f.read()
2026-03-05T14:58:35,553   else:
2026-03-05T14:58:35,553       filename = "<auto-generated setuptools caller>"
2026-03-05T14:58:35,553       setup_py_code = "from setuptools import setup; setup()"
2026-03-05T14:58:35,553   
2026-03-05T14:58:35,553   exec(compile(setup_py_code, filename, "exec"))
2026-03-05T14:58:35,553   '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-nqkevd_l/kssdutils_dc7854f5393f4d6eb43ea06ed182044b/setup.py'"'"',), "<pip-setuptools-caller>", "exec"))' bdist_wheel -d /tmp/pip-wheel-vx6sm9na[/]
2026-03-05T14:58:35,553   [bold magenta]cwd[/]: /tmp/pip-wheel-nqkevd_l/kssdutils_dc7854f5393f4d6eb43ea06ed182044b/
2026-03-05T14:58:35,553   Building wheel for kssdutils (setup.py): finished with status 'error'
2026-03-05T14:58:35,554   ERROR: Failed building wheel for kssdutils
2026-03-05T14:58:35,555   Running setup.py clean for kssdutils
2026-03-05T14:58:35,555   Running command python setup.py clean
2026-03-05T14:58:36,981   running clean
2026-03-05T14:58:37,128   removing 'build/temp.linux-armv7l-cpython-313' (and everything under it)
2026-03-05T14:58:37,129   removing 'build/lib.linux-armv7l-cpython-313' (and everything under it)
2026-03-05T14:58:37,129   'build/bdist.linux-armv7l' does not exist -- can't clean it
2026-03-05T14:58:37,129   'build/scripts-3.13' does not exist -- can't clean it
2026-03-05T14:58:37,129   removing 'build'
2026-03-05T14:58:37,242 Failed to build kssdutils
2026-03-05T14:58:37,243 ERROR: Failed to build one or more wheels
2026-03-05T14:58:37,244 Exception information:
2026-03-05T14:58:37,244 Traceback (most recent call last):
2026-03-05T14:58:37,244   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper
2026-03-05T14:58:37,244     status = _inner_run()
2026-03-05T14:58:37,244   File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run
2026-03-05T14:58:37,244     return self.run(options, args)
2026-03-05T14:58:37,244            ~~~~~~~~^^^^^^^^^^^^^^^
2026-03-05T14:58:37,244   File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper
2026-03-05T14:58:37,244     return func(self, options, args)
2026-03-05T14:58:37,244   File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run
2026-03-05T14:58:37,244     raise CommandError("Failed to build one or more wheels")
2026-03-05T14:58:37,244 pip._internal.exceptions.CommandError: Failed to build one or more wheels
2026-03-05T14:58:37,249 Removed build tracker: '/tmp/pip-build-tracker-cc9ipmq9'