2026-03-05T18:29:10,731 Created temporary directory: /tmp/pip-ephem-wheel-cache-6j527f4v
2026-03-05T18:29:10,736 Created temporary directory: /tmp/pip-req-tracker-vyr76pth
2026-03-05T18:29:10,737 Initialized build tracking at /tmp/pip-req-tracker-vyr76pth
2026-03-05T18:29:10,738 Created build tracker: /tmp/pip-req-tracker-vyr76pth
2026-03-05T18:29:10,738 Entered build tracker: /tmp/pip-req-tracker-vyr76pth
2026-03-05T18:29:10,739 Created temporary directory: /tmp/pip-wheel-x9hh932f
2026-03-05T18:29:10,784 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple
2026-03-05T18:29:10,788 2 location(s) to search for versions of kssdutils:
2026-03-05T18:29:10,788 * https://pypi.org/simple/kssdutils/
2026-03-05T18:29:10,788 * https://www.piwheels.org/simple/kssdutils/
2026-03-05T18:29:10,789 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/
2026-03-05T18:29:10,790 Getting page https://pypi.org/simple/kssdutils/
2026-03-05T18:29:10,793 Found index url https://pypi.org/simple
2026-03-05T18:29:10,802 Starting new HTTPS connection (1): pypi.org:443
2026-03-05T18:29:10,973 https://pypi.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1617
2026-03-05T18:29:11,149   Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz#sha256=8d679d5f963a767a4df5ded96f9aa2cd10524d23f7d418797ae62baaca759e1f (from https://pypi.org/simple/kssdutils/), version: 1.0.0
2026-03-05T18:29:11,150   Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz#sha256=cc08f86ac8152ac9a7f506f8d2f4808dca0754cebd06565f3de1cb7e639a310c (from https://pypi.org/simple/kssdutils/), version: 1.0.1
2026-03-05T18:29:11,151   Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz#sha256=384edc154817d0cbea825d78f0d58bee3fbe1811532e1f8ea77b8b7cb1e7fc84 (from https://pypi.org/simple/kssdutils/), version: 1.0.2
2026-03-05T18:29:11,152   Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz#sha256=412ff6a0cfd2bd03e01e83c8cb7cb663679b530682d69aad8733e696d8a2fae7 (from https://pypi.org/simple/kssdutils/), version: 1.0.3
2026-03-05T18:29:11,152   Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz#sha256=34a917037f0205223ec2e2b6a87da9381a3c5224a109a2ca92f010b72824f284 (from https://pypi.org/simple/kssdutils/), version: 1.0.5
2026-03-05T18:29:11,153   Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz#sha256=9e8e97befc6bcdf3bc904d558ac9e6a0bddf4458096aaaa5f0ef1ab344223ed5 (from https://pypi.org/simple/kssdutils/), version: 1.0.6
2026-03-05T18:29:11,154   Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz#sha256=f5862cfef7ea29d8c668475cdedf83af1b6c352d24827694a07af0fc82597032 (from https://pypi.org/simple/kssdutils/), version: 1.0.7
2026-03-05T18:29:11,155   Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz#sha256=07328ca56be9994670fea19e700d7c9b8f67c317bc8731c48939dd54e1cba32e (from https://pypi.org/simple/kssdutils/), version: 1.1.0
2026-03-05T18:29:11,155   Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d (from https://pypi.org/simple/kssdutils/), version: 1.1.2
2026-03-05T18:29:11,156   Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz#sha256=50dd2c513e94169e8fff9f28ff60e4bc059f409b49c3cff387d3ef49564f3c82 (from https://pypi.org/simple/kssdutils/), version: 1.1.3
2026-03-05T18:29:11,157   Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz#sha256=4f833f05e3fbed227f6cba1b2db89b12a0dbe7fc4634fa9c89c20446c3efab1b (from https://pypi.org/simple/kssdutils/), version: 1.1.4
2026-03-05T18:29:11,158   Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz#sha256=416f323a70d8f556b186cc63e8f0b2e4b0b2ce9d3d7f716e04bb2a3f7d08e86c (from https://pypi.org/simple/kssdutils/), version: 1.1.5
2026-03-05T18:29:11,158   Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz#sha256=837148a9c069b8be1673edc80e4e380e956ed68df704095b6718e9ed927db051 (from https://pypi.org/simple/kssdutils/), version: 1.1.7
2026-03-05T18:29:11,159   Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz#sha256=54608ccc25c64db2983ef65844a7932bc6d8cc53afd1370ca8073409d488df2e (from https://pypi.org/simple/kssdutils/), version: 1.1.8
2026-03-05T18:29:11,160   Found link https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz#sha256=fdfc3cd69b375b4cfa96aed7837bc1214a2d1744234dadd729b9b06963ae0769 (from https://pypi.org/simple/kssdutils/), version: 1.1.9
2026-03-05T18:29:11,160 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/
2026-03-05T18:29:11,161 Getting page https://www.piwheels.org/simple/kssdutils/
2026-03-05T18:29:11,163 Found index url https://www.piwheels.org/simple
2026-03-05T18:29:11,167 Starting new HTTPS connection (1): www.piwheels.org:443
2026-03-05T18:29:11,283 https://www.piwheels.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1665
2026-03-05T18:29:11,354   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,355   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,355   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,356   Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,356   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,357   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,358   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,358   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,359   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,359   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,360   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,360   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,361   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,361   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,362   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,362   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,363   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,363   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,364   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,364   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,365   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,365   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,366   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,367   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,367   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,368   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,368   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,369   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,369   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,370   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,370   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,371   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,371   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,372   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,372   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,373   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,373   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,374   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,374   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,375   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,375   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,376   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,376   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,377   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,377   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,378   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,378   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,379   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,379   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,380   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,380   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,381   Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/)
2026-03-05T18:29:11,457 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates
2026-03-05T18:29:11,529 Collecting kssdutils==1.1.8
2026-03-05T18:29:11,533   Created temporary directory: /tmp/pip-unpack-heyj5e3h
2026-03-05T18:29:11,541   Starting new HTTPS connection (1): files.pythonhosted.org:443
2026-03-05T18:29:11,617   https://files.pythonhosted.org:443 "GET /packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz HTTP/1.1" 200 44690
2026-03-05T18:29:11,620   Downloading kssdutils-1.1.8.tar.gz (44 kB)
2026-03-05T18:29:11,798   Added kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz#sha256=54608ccc25c64db2983ef65844a7932bc6d8cc53afd1370ca8073409d488df2e to build tracker '/tmp/pip-req-tracker-vyr76pth'
2026-03-05T18:29:11,800     Running setup.py (path:/tmp/pip-wheel-x9hh932f/kssdutils_9e359b5d18e24f42addfc6d597852bea/setup.py) egg_info for package kssdutils
2026-03-05T18:29:11,801     Created temporary directory: /tmp/pip-pip-egg-info-kt9z5nhp
2026-03-05T18:29:11,802     Running command python setup.py egg_info
2026-03-05T18:29:14,007     running egg_info
2026-03-05T18:29:14,083     creating /tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info
2026-03-05T18:29:14,085     writing /tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/PKG-INFO
2026-03-05T18:29:14,093     writing dependency_links to /tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/dependency_links.txt
2026-03-05T18:29:14,098     writing top-level names to /tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/top_level.txt
2026-03-05T18:29:14,101     writing manifest file '/tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/SOURCES.txt'
2026-03-05T18:29:14,299     reading manifest file '/tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/SOURCES.txt'
2026-03-05T18:29:14,302     reading manifest template 'MANIFEST.in'
2026-03-05T18:29:14,323     writing manifest file '/tmp/pip-pip-egg-info-kt9z5nhp/kssdutils.egg-info/SOURCES.txt'
2026-03-05T18:29:14,481   Source in /tmp/pip-wheel-x9hh932f/kssdutils_9e359b5d18e24f42addfc6d597852bea has version 1.1.8, which satisfies requirement kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz#sha256=54608ccc25c64db2983ef65844a7932bc6d8cc53afd1370ca8073409d488df2e
2026-03-05T18:29:14,483   Removed kssdutils==1.1.8 from https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz#sha256=54608ccc25c64db2983ef65844a7932bc6d8cc53afd1370ca8073409d488df2e from build tracker '/tmp/pip-req-tracker-vyr76pth'
2026-03-05T18:29:14,491 Created temporary directory: /tmp/pip-unpack-csrba9p_
2026-03-05T18:29:14,492 Building wheels for collected packages: kssdutils
2026-03-05T18:29:14,500   Created temporary directory: /tmp/pip-wheel-qkw75vcs
2026-03-05T18:29:14,501   Building wheel for kssdutils (setup.py): started
2026-03-05T18:29:14,502   Destination directory: /tmp/pip-wheel-qkw75vcs
2026-03-05T18:29:14,502   Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-x9hh932f/kssdutils_9e359b5d18e24f42addfc6d597852bea/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-x9hh932f/kssdutils_9e359b5d18e24f42addfc6d597852bea/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-qkw75vcs
2026-03-05T18:29:16,518   running bdist_wheel
2026-03-05T18:29:16,773   running build
2026-03-05T18:29:16,774   running build_ext
2026-03-05T18:29:17,929   building 'kssdtool' extension
2026-03-05T18:29:17,933   creating build/temp.linux-armv7l-cpython-39
2026-03-05T18:29:17,938   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp
2026-03-05T18:29:18,331   co2mco.c: In function ‘cdb_kmerf2kmerdb’:
2026-03-05T18:29:18,332   co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2026-03-05T18:29:18,333     109 |     for (unsigned int i = 0; i < comp_num; i++) {
2026-03-05T18:29:18,333         |                                ^
2026-03-05T18:29:18,341   co2mco.c: In function ‘co2unitllmco’:
2026-03-05T18:29:18,342   co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
2026-03-05T18:29:18,342     191 |     for (unsigned int i = 0; i < bin_sz; i++) {
2026-03-05T18:29:18,343         |                                ^
2026-03-05T18:29:19,824   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp
2026-03-05T18:29:20,554   command_composite.c: In function ‘get_species_abundance’:
2026-03-05T18:29:20,555   command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
2026-03-05T18:29:20,556      32 |     if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath);
2026-03-05T18:29:20,556         |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,557   command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
2026-03-05T18:29:20,558      34 |     if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath);
2026-03-05T18:29:20,558         |                                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,561   command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:20,561      64 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c);
2026-03-05T18:29:20,562         |                                     ^
2026-03-05T18:29:20,562   command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256
2026-03-05T18:29:20,563      64 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c);
2026-03-05T18:29:20,563         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,564   command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:20,565      70 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c);
2026-03-05T18:29:20,565         |                                     ^
2026-03-05T18:29:20,566   command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256
2026-03-05T18:29:20,566      70 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c);
2026-03-05T18:29:20,567         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,577   command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:20,578      76 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c);
2026-03-05T18:29:20,579         |                                     ^
2026-03-05T18:29:20,579   command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256
2026-03-05T18:29:20,580      76 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c);
2026-03-05T18:29:20,580         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,581   command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:20,581      82 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c);
2026-03-05T18:29:20,581         |                                     ^
2026-03-05T18:29:20,582   command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256
2026-03-05T18:29:20,582      82 |             sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c);
2026-03-05T18:29:20,583         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:20,583   command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:20,584      88 |             sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c);
2026-03-05T18:29:20,584         |                                     ^
2026-03-05T18:29:20,585   command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256
2026-03-05T18:29:20,585      88 |             sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c);
2026-03-05T18:29:20,586         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,143   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp
2026-03-05T18:29:21,615   command_dist.c: In function ‘mco_cbd_co_dist’:
2026-03-05T18:29:21,618   command_dist.c:677:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,618     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,619         |                         ~~^
2026-03-05T18:29:21,619         |                           |
2026-03-05T18:29:21,619         |                           long unsigned int
2026-03-05T18:29:21,620         |                         %u
2026-03-05T18:29:21,620     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,621         |                ~~~~~~~
2026-03-05T18:29:21,621         |                |
2026-03-05T18:29:21,621         |                size_t {aka unsigned int}
2026-03-05T18:29:21,622   command_dist.c:677:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,622     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,623         |                                                                                          ~~^
2026-03-05T18:29:21,623         |                                                                                            |
2026-03-05T18:29:21,623         |                                                                                            long unsigned int
2026-03-05T18:29:21,624         |                                                                                          %u
2026-03-05T18:29:21,624     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,625     679 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T18:29:21,625         |                ~~~~~~~~~
2026-03-05T18:29:21,626         |                |
2026-03-05T18:29:21,626         |                size_t {aka unsigned int}
2026-03-05T18:29:21,627   command_dist.c:677:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T18:29:21,627     677 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,628         |                                                                                               ~~^
2026-03-05T18:29:21,628         |                                                                                                 |
2026-03-05T18:29:21,629         |                                                                                                 long unsigned int
2026-03-05T18:29:21,629         |                                                                                               %u
2026-03-05T18:29:21,629     678 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,630     679 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T18:29:21,630         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,631         |                                      |
2026-03-05T18:29:21,631         |                                      unsigned int
2026-03-05T18:29:21,632   command_dist.c:715:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T18:29:21,632     715 |                 for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) {
2026-03-05T18:29:21,633         |                                   ^
2026-03-05T18:29:21,644   command_dist.c: In function ‘mco_cbdco_nobin_dist’:
2026-03-05T18:29:21,647   command_dist.c:863:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,648     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T18:29:21,648         |                         ~~^                                                                            ~~~~~~~
2026-03-05T18:29:21,649         |                           |                                                                            |
2026-03-05T18:29:21,649         |                           long unsigned int                                                            size_t {aka unsigned int}
2026-03-05T18:29:21,649         |                         %u
2026-03-05T18:29:21,651   command_dist.c:863:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,652     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T18:29:21,652         |                                                                                           ~~^
2026-03-05T18:29:21,652         |                                                                                             |
2026-03-05T18:29:21,653         |                                                                                             long unsigned int
2026-03-05T18:29:21,653         |                                                                                           %u
2026-03-05T18:29:21,653     864 |                mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength,
2026-03-05T18:29:21,654         |                                                                                                         ~~~~~~~~~
2026-03-05T18:29:21,654         |                                                                                                         |
2026-03-05T18:29:21,655         |                                                                                                         size_t {aka unsigned int}
2026-03-05T18:29:21,655   command_dist.c:863:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T18:29:21,656     863 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz,
2026-03-05T18:29:21,656         |                                                                                                ~~^
2026-03-05T18:29:21,656         |                                                                                                  |
2026-03-05T18:29:21,657         |                                                                                                  long unsigned int
2026-03-05T18:29:21,657         |                                                                                                %u
2026-03-05T18:29:21,658     864 |                mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength,
2026-03-05T18:29:21,658     865 |                (size_t) b * unitsz_distf_mapped);
2026-03-05T18:29:21,659         |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,659         |                           |
2026-03-05T18:29:21,659         |                           unsigned int
2026-03-05T18:29:21,660   command_dist.c:810:13: warning: unused variable ‘fco_pos’ [-Wunused-variable]
2026-03-05T18:29:21,660     810 |     size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1));
2026-03-05T18:29:21,661         |             ^~~~~~~
2026-03-05T18:29:21,661   command_dist.c:809:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable]
2026-03-05T18:29:21,661     809 |     struct stat cbd_fcode_stat;
2026-03-05T18:29:21,662         |                 ^~~~~~~~~~~~~~
2026-03-05T18:29:21,662   command_dist.c:808:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable]
2026-03-05T18:29:21,663     808 |     FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp;
2026-03-05T18:29:21,663         |                               ^~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,664   command_dist.c:808:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable]
2026-03-05T18:29:21,664     808 |     FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp;
2026-03-05T18:29:21,665         |           ^~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,677   command_dist.c: In function ‘mco_cbd_koc_compatible_dist’:
2026-03-05T18:29:21,681   command_dist.c:1018:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,681    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,682         |                         ~~^
2026-03-05T18:29:21,682         |                           |
2026-03-05T18:29:21,682         |                           long unsigned int
2026-03-05T18:29:21,683         |                         %u
2026-03-05T18:29:21,683    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,684         |                ~~~~~~~
2026-03-05T18:29:21,684         |                |
2026-03-05T18:29:21,684         |                size_t {aka unsigned int}
2026-03-05T18:29:21,685   command_dist.c:1018:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:21,685    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,686         |                                                                                          ~~^
2026-03-05T18:29:21,686         |                                                                                            |
2026-03-05T18:29:21,687         |                                                                                            long unsigned int
2026-03-05T18:29:21,687         |                                                                                          %u
2026-03-05T18:29:21,687    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,688    1020 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T18:29:21,688         |                ~~~~~~~~~
2026-03-05T18:29:21,689         |                |
2026-03-05T18:29:21,689         |                size_t {aka unsigned int}
2026-03-05T18:29:21,689   command_dist.c:1018:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=]
2026-03-05T18:29:21,690    1018 |         printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n",
2026-03-05T18:29:21,690         |                                                                                               ~~^
2026-03-05T18:29:21,691         |                                                                                                 |
2026-03-05T18:29:21,691         |                                                                                                 long unsigned int
2026-03-05T18:29:21,692         |                                                                                               %u
2026-03-05T18:29:21,692    1019 |                disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile,
2026-03-05T18:29:21,692    1020 |                maplength, (size_t) b * unitsz_distf_mapped);
2026-03-05T18:29:21,693         |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:21,693         |                                      |
2026-03-05T18:29:21,694         |                                      unsigned int
2026-03-05T18:29:21,694   command_dist.c:1034:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,695    1034 |             if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size);
2026-03-05T18:29:21,695         |                           ^
2026-03-05T18:29:21,701   command_dist.c: In function ‘mco_co_dist_core’:
2026-03-05T18:29:21,702   command_dist.c:1116:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T18:29:21,703    1116 |             for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) {
2026-03-05T18:29:21,703         |                               ^
2026-03-05T18:29:21,716   command_dist.c: In function ‘koc_dist_print_nobin’:
2026-03-05T18:29:21,718   command_dist.c:1239:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,719    1239 |             for (int rid = 0; rid < ref_num; rid++)
2026-03-05T18:29:21,719         |                                   ^
2026-03-05T18:29:21,722   command_dist.c:1245:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,722    1245 |             for (int rid = 0; rid < ref_num; rid++) {
2026-03-05T18:29:21,723         |                                   ^
2026-03-05T18:29:21,734   command_dist.c: In function ‘dist_print_nobin’:
2026-03-05T18:29:21,736   command_dist.c:1335:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,737    1335 |     if ((N_max > NREF) || (N_max > ref_num)) {
2026-03-05T18:29:21,737         |                                  ^
2026-03-05T18:29:21,741   command_dist.c:1356:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,742    1356 |                 for (int rid = 0; rid < ref_num; rid++) {
2026-03-05T18:29:21,742         |                                       ^
2026-03-05T18:29:21,745   command_dist.c:1380:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,745    1380 |                 for (int rid = 0; rid < ref_num; rid++)
2026-03-05T18:29:21,746         |                                       ^
2026-03-05T18:29:21,747   command_dist.c:1382:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
2026-03-05T18:29:21,748    1382 |                 for (int rid = 0; rid < ref_num; rid++)
2026-03-05T18:29:21,748         |                                       ^
2026-03-05T18:29:22,343   command_dist.c: In function ‘run_stageI._omp_fn.1’:
2026-03-05T18:29:22,344   command_dist.c:403:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
2026-03-05T18:29:22,344     403 |                     fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp);
2026-03-05T18:29:22,345         |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:22,345   command_dist.c:375:40: note: ‘com_abund_fp’ was declared here
2026-03-05T18:29:22,346     375 |             FILE *com_cofp, *indexfp, *com_abund_fp;
2026-03-05T18:29:22,346         |                                        ^~~~~~~~~~~~
2026-03-05T18:29:24,091   command_dist.c: In function ‘get_dim_shuffle’:
2026-03-05T18:29:24,092   command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=]
2026-03-05T18:29:24,092     267 |         sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix);
2026-03-05T18:29:24,093         |                                    ^~        ~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:24,094   command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256
2026-03-05T18:29:24,094     267 |         sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix);
2026-03-05T18:29:24,094         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:25,991   command_dist.c: In function ‘mco_cbd_co_dist’:
2026-03-05T18:29:25,992   command_dist.c:596:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:25,993     596 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:25,993         |                                     ^~                 ~~~~~~~~~
2026-03-05T18:29:25,994   command_dist.c:596:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T18:29:25,994     596 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:25,995         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:25,995   command_dist.c:625:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:25,995     625 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:25,996         |                         ^~~~~~~~~~~~~~~
2026-03-05T18:29:25,996   command_dist.c:625:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T18:29:25,997     625 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:25,997         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:25,999   command_dist.c:681:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:25,999     681 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T18:29:25,1000         |                                         ^~~~~~~~~~~
2026-03-05T18:29:26,000   command_dist.c:681:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256
2026-03-05T18:29:26,001     681 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T18:29:26,001         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,002   command_dist.c:682:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:26,002     682 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T18:29:26,002         |                                   ^~~~~
2026-03-05T18:29:26,003   command_dist.c:682:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T18:29:26,003     682 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T18:29:26,004         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,498   command_dist.c: In function ‘mco_cbdco_nobin_dist’:
2026-03-05T18:29:26,499   command_dist.c:763:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:26,500     763 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:26,500         |                                     ^~                 ~~~~~~~~~
2026-03-05T18:29:26,501   command_dist.c:763:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T18:29:26,501     763 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:26,502         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,503   command_dist.c:790:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:26,503     790 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:26,503         |                         ^~~~~~~~~~~~~~~
2026-03-05T18:29:26,504   command_dist.c:790:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T18:29:26,504     790 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:26,505         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,505   command_dist.c:823:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:26,506     823 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T18:29:26,506         |                       ^~~~~~~~~~~~~
2026-03-05T18:29:26,507   command_dist.c:823:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T18:29:26,507     823 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T18:29:26,508         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,510   command_dist.c:849:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:26,510     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T18:29:26,510         |                                       ^
2026-03-05T18:29:26,511   command_dist.c:849:33: note: directive argument in the range [0, 536870912]
2026-03-05T18:29:26,511     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T18:29:26,512         |                                 ^~~~~~~~~~
2026-03-05T18:29:26,512   command_dist.c:849:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256
2026-03-05T18:29:26,513     849 |        sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j);
2026-03-05T18:29:26,513         |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:26,514   command_dist.c:851:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:26,514     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T18:29:26,515         |                                  ^
2026-03-05T18:29:26,515   command_dist.c:851:28: note: directive argument in the range [0, 536870912]
2026-03-05T18:29:26,516     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T18:29:26,516         |                            ^~~~~~~~~~
2026-03-05T18:29:26,517   command_dist.c:851:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256
2026-03-05T18:29:26,517     851 |         sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j);
2026-03-05T18:29:26,518         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,081   command_dist.c: In function ‘mco_cbd_koc_compatible_dist’:
2026-03-05T18:29:27,083   command_dist.c:927:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:27,083     927 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:27,084         |                                     ^~                 ~~~~~~~~~
2026-03-05T18:29:27,084   command_dist.c:927:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256
2026-03-05T18:29:27,085     927 |     sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat);
2026-03-05T18:29:27,085         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,087   command_dist.c:956:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:27,087     956 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:27,087         |                         ^~~~~~~~~~~~~~~
2026-03-05T18:29:27,088   command_dist.c:956:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256
2026-03-05T18:29:27,089     956 |     sprintf(onedist, "%s/sharedk_ct.dat", distout_dir);
2026-03-05T18:29:27,089         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,090   command_dist.c:990:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:27,091     990 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T18:29:27,091         |                       ^~~~~~~~~~~~~
2026-03-05T18:29:27,092   command_dist.c:990:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T18:29:27,092     990 |     sprintf(distf, "%s/distance.out", distout_dir);
2026-03-05T18:29:27,093         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,095   command_dist.c:1022:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:27,096    1022 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T18:29:27,096         |                                         ^~~~~~~~~~~
2026-03-05T18:29:27,097   command_dist.c:1022:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256
2026-03-05T18:29:27,097    1022 |             sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j);
2026-03-05T18:29:27,098         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,099   command_dist.c:1023:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
2026-03-05T18:29:27,099    1023 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T18:29:27,099         |                                   ^~~~~
2026-03-05T18:29:27,100   command_dist.c:1023:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T18:29:27,101    1023 |             sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j);
2026-03-05T18:29:27,101         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,690   command_dist.c: In function ‘combine_queries’:
2026-03-05T18:29:27,692   command_dist.c:1492:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:27,693    1492 |     sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname);
2026-03-05T18:29:27,693         |                                         ^
2026-03-05T18:29:27,695   command_dist.c:1492:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:27,695    1492 |     sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname);
2026-03-05T18:29:27,696         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,698   command_dist.c:1499:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:27,698    1499 |     sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname);
2026-03-05T18:29:27,698         |                                        ^
2026-03-05T18:29:27,700   command_dist.c:1499:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:27,701    1499 |     sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname);
2026-03-05T18:29:27,701         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:27,705   command_dist.c:1603:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:27,706    1603 |     sprintf(one_stat_name, "%s/%s", co_dir, co_dstat);
2026-03-05T18:29:27,706         |                                ^~           ~~~~~~~~
2026-03-05T18:29:27,708   command_dist.c:1603:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256
2026-03-05T18:29:27,709    1603 |     sprintf(one_stat_name, "%s/%s", co_dir, co_dstat);
2026-03-05T18:29:27,709         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:28,934   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp
2026-03-05T18:29:29,347   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp
2026-03-05T18:29:29,706   command_set.c: In function ‘sketch_operate’:
2026-03-05T18:29:29,707   command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
2026-03-05T18:29:29,707     178 |             for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){
2026-03-05T18:29:29,708         |                              ^
2026-03-05T18:29:29,730   command_set.c: In function ‘combin_subset_pans’:
2026-03-05T18:29:29,731   command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-03-05T18:29:29,731     457 |     free(co_dstat_fpath);
2026-03-05T18:29:29,732         |          ^~~~~~~~~~~~~~
2026-03-05T18:29:29,732   In file included from kssdheaders/global_basic.h:159,
2026-03-05T18:29:29,733                    from command_set.c:15:
2026-03-05T18:29:29,733   /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’
2026-03-05T18:29:29,734     565 | extern void free (void *__ptr) __THROW;
2026-03-05T18:29:29,734         |                   ~~~~~~^~~~~
2026-03-05T18:29:29,742   command_set.c: In function ‘grouping_genomes’:
2026-03-05T18:29:29,743   command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers]
2026-03-05T18:29:29,744     562 |     free(co_dstat_fpath);
2026-03-05T18:29:29,744         |          ^~~~~~~~~~~~~~
2026-03-05T18:29:29,744   In file included from kssdheaders/global_basic.h:159,
2026-03-05T18:29:29,745                    from command_set.c:15:
2026-03-05T18:29:29,745   /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’
2026-03-05T18:29:29,746     565 | extern void free (void *__ptr) __THROW;
2026-03-05T18:29:29,746         |                   ~~~~~~^~~~~
2026-03-05T18:29:30,020   command_set.c: In function ‘sketch_union’:
2026-03-05T18:29:30,021   command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:30,021      71 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,022         |                           ^
2026-03-05T18:29:30,022   command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:30,023      71 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,023         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,024   command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,024      82 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T18:29:30,025         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:30,025   command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:30,026      82 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T18:29:30,026         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,027   command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,027      92 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i);
2026-03-05T18:29:30,028         |                             ^~                    ~~~~~~~~~~
2026-03-05T18:29:30,028   command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T18:29:30,028      92 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i);
2026-03-05T18:29:30,029         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,296   command_set.c: In function ‘sketch_operate’:
2026-03-05T18:29:30,296   command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,297     153 |         sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c);
2026-03-05T18:29:30,297         |                             ^~                            ~~~~~~~~~~
2026-03-05T18:29:30,298   command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256
2026-03-05T18:29:30,298     153 |         sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c);
2026-03-05T18:29:30,299         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,299   command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,300     155 |             sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c);
2026-03-05T18:29:30,300         |                                 ^~                            ~~~~~~~~~~~~~~~
2026-03-05T18:29:30,300   command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256
2026-03-05T18:29:30,301     155 |             sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c);
2026-03-05T18:29:30,301         |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,302   command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,302     165 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T18:29:30,303         |                             ^~                                ~~~~~~~~~~~
2026-03-05T18:29:30,303   command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:30,303     165 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T18:29:30,304         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,304   command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,305     169 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T18:29:30,305         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:30,306   command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:30,306     169 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c);
2026-03-05T18:29:30,306         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,307   command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,307     174 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T18:29:30,308         |                             ^~                    ~~~~~~~~~~~
2026-03-05T18:29:30,308   command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:30,309     174 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T18:29:30,309         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,310   command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,310     187 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T18:29:30,311         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:30,311   command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:30,311     187 |         sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c);
2026-03-05T18:29:30,312         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,312   command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:30,313     192 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,313         |                           ^
2026-03-05T18:29:30,314   command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:30,314     192 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,315         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,667   command_set.c: In function ‘uniq_sketch_union’:
2026-03-05T18:29:30,668   command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:30,668     234 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,669         |                           ^
2026-03-05T18:29:30,669   command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:30,670     234 |     sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,670         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,671   command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,671     247 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T18:29:30,671         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:30,672   command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:30,672     247 |         sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i);
2026-03-05T18:29:30,673         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,673   command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,674     259 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i);
2026-03-05T18:29:30,674         |                             ^~                    ~~~~~~~~~~~~~~~
2026-03-05T18:29:30,675   command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256
2026-03-05T18:29:30,675     259 |         sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i);
2026-03-05T18:29:30,675         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,975   command_set.c: In function ‘combin_pans’:
2026-03-05T18:29:30,976   command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,976     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:30,977         |                             ^~                    ~~~~~~~~~~~
2026-03-05T18:29:30,977   command_set.c:297:25: note: directive argument in the range [0, 1073741823]
2026-03-05T18:29:30,978     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:30,978         |                         ^~~~~~~~~~
2026-03-05T18:29:30,978   command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256
2026-03-05T18:29:30,979     297 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:30,979         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,980   command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:30,980     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:30,981         |                             ^~                    ~~~~~~~~~~
2026-03-05T18:29:30,981   command_set.c:300:25: note: directive argument in the range [0, 1073741823]
2026-03-05T18:29:30,981     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:30,982         |                         ^~~~~~~~~~
2026-03-05T18:29:30,982   command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256
2026-03-05T18:29:30,983     300 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:30,983         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:30,984   command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:30,984     342 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,985         |                           ^
2026-03-05T18:29:30,985   command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:30,985     342 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:30,986         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,423   command_set.c: In function ‘combin_subset_pans’:
2026-03-05T18:29:31,424   command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,425     469 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T18:29:31,425         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:31,426   command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:31,426     469 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T18:29:31,426         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,427   command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,427     475 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T18:29:31,428         |                             ^~                          ~~~~~~~~~~
2026-03-05T18:29:31,428   command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:31,429     475 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T18:29:31,429         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,429   command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,430     481 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:31,430         |                             ^~                    ~~~~~~~~~~~
2026-03-05T18:29:31,431   command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:31,431     481 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:31,432         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,433   command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,434     512 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:31,434         |                             ^~                    ~~~~~~~~~~
2026-03-05T18:29:31,435   command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:31,435     512 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:31,435         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,436   command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:31,436     523 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:31,437         |                           ^
2026-03-05T18:29:31,437   command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:31,438     523 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:31,438         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,922   command_set.c: In function ‘grouping_genomes’:
2026-03-05T18:29:31,923   command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,924     574 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T18:29:31,924         |                             ^~                          ~~~~~~~~~~~
2026-03-05T18:29:31,925   command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:31,925     574 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c);
2026-03-05T18:29:31,926         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,926   command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,926     580 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T18:29:31,927         |                             ^~                          ~~~~~~~~~~
2026-03-05T18:29:31,928   command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:31,928     580 |         sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c);
2026-03-05T18:29:31,928         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,931   command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,932     612 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:31,932         |                             ^~                    ~~~~~~~~~~~
2026-03-05T18:29:31,933   command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256
2026-03-05T18:29:31,933     612 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c);
2026-03-05T18:29:31,934         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,935   command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=]
2026-03-05T18:29:31,935     634 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:31,936         |                             ^~                    ~~~~~~~~~~
2026-03-05T18:29:31,936   command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256
2026-03-05T18:29:31,937     634 |         sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c);
2026-03-05T18:29:31,937         |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:31,938   command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
2026-03-05T18:29:31,938     645 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:31,938         |                           ^
2026-03-05T18:29:31,939   command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256
2026-03-05T18:29:31,939     645 |     sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat);
2026-03-05T18:29:31,940         |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:32,598   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp
2026-03-05T18:29:33,269   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp
2026-03-05T18:29:33,624   global_basic.c: In function ‘organize_infile_list’:
2026-03-05T18:29:33,625   global_basic.c:195:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration]
2026-03-05T18:29:33,625     195 |             while (isspace(*buf)) buf++;
2026-03-05T18:29:33,626         |                    ^~~~~~~
2026-03-05T18:29:33,626   global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:33,627     201 |                         "the input list: %s\n %dth line:  %s  has %lu characters exceed the maximal allowed length %d",
2026-03-05T18:29:33,627         |                                                                   ~~^
2026-03-05T18:29:33,628         |                                                                     |
2026-03-05T18:29:33,628         |                                                                     long unsigned int
2026-03-05T18:29:33,629         |                                                                   %u
2026-03-05T18:29:33,629     202 |                         list_path, file_num, buf, strlen(buf), PATHLEN);
2026-03-05T18:29:33,630         |                                                   ~~~~~~~~~~~
2026-03-05T18:29:33,630         |                                                   |
2026-03-05T18:29:33,631         |                                                   size_t {aka unsigned int}
2026-03-05T18:29:33,631   global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=]
2026-03-05T18:29:33,632     233 |                         "the input list: %s\n %dth line:  %s  has %lu characters exceed the maximal allowed length %d",
2026-03-05T18:29:33,632         |                                                                   ~~^
2026-03-05T18:29:33,633         |                                                                     |
2026-03-05T18:29:33,633         |                                                                     long unsigned int
2026-03-05T18:29:33,634         |                                                                   %u
2026-03-05T18:29:33,634     234 |                         list_path, file_num, buf, strlen(buf), PATHLEN);
2026-03-05T18:29:33,634         |                                                   ~~~~~~~~~~~
2026-03-05T18:29:33,635         |                                                   |
2026-03-05T18:29:33,635         |                                                   size_t {aka unsigned int}
2026-03-05T18:29:35,249   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp
2026-03-05T18:29:35,628   iseq2comem.c: In function ‘reads2mco’:
2026-03-05T18:29:35,629   iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,630     156 |         if (base > TL) {
2026-03-05T18:29:35,630         |                  ^
2026-03-05T18:29:35,631   iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,631     160 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,632         |                          ^~
2026-03-05T18:29:35,632   iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,633     160 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,633         |                                                  ^
2026-03-05T18:29:35,634   iseq2comem.c: In function ‘fasta2co’:
2026-03-05T18:29:35,634   iseq2comem.c:213:69: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,635     213 |         if ((infp = popen(fas_fname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n");
2026-03-05T18:29:35,635         |                                                                     ^~~~~~~~~~~~~~~
2026-03-05T18:29:35,636   iseq2comem.c:219:68: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,636     219 |         if ((infp = popen(seqfname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n");
2026-03-05T18:29:35,637         |                                                                    ^~~~~~~~~~~~~~~
2026-03-05T18:29:35,637   iseq2comem.c:261:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,638     261 |         if (base > TL) {
2026-03-05T18:29:35,638         |                  ^
2026-03-05T18:29:35,639   iseq2comem.c:265:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,639     265 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,640         |                          ^~
2026-03-05T18:29:35,640   iseq2comem.c:265:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,641     265 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,641         |                                                  ^
2026-03-05T18:29:35,642   iseq2comem.c: In function ‘fastq2co’:
2026-03-05T18:29:35,642   iseq2comem.c:295:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare]
2026-03-05T18:29:35,642     295 |     if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX);
2026-03-05T18:29:35,643         |           ^~
2026-03-05T18:29:35,643   iseq2comem.c:307:68: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,644     307 |         if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n");
2026-03-05T18:29:35,644         |                                                                    ^~~~~~~~~~~~~~~
2026-03-05T18:29:35,645   iseq2comem.c:313:68: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,645     313 |         if ((infp = popen(seqfname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n");
2026-03-05T18:29:35,646         |                                                                    ^~~~~~~~~~~~~~~
2026-03-05T18:29:35,646   iseq2comem.c:352:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,647     352 |         if (base > TL) {
2026-03-05T18:29:35,647         |                  ^
2026-03-05T18:29:35,648   iseq2comem.c:356:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,648     356 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,649         |                          ^~
2026-03-05T18:29:35,649   iseq2comem.c:356:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,649     356 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,650         |                                                  ^
2026-03-05T18:29:35,650   iseq2comem.c:375:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,651     375 |                     if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX;
2026-03-05T18:29:35,651         |                                            ^
2026-03-05T18:29:35,652   iseq2comem.c: In function ‘fastq2koc’:
2026-03-05T18:29:35,652   iseq2comem.c:403:68: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,653     403 |         if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n");
2026-03-05T18:29:35,653         |                                                                    ^~~~~~~~~~~~~~~~
2026-03-05T18:29:35,653   iseq2comem.c:409:68: warning: too many arguments for format [-Wformat-extra-args]
2026-03-05T18:29:35,654     409 |         if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n");
2026-03-05T18:29:35,654         |                                                                    ^~~~~~~~~~~~~~~~
2026-03-05T18:29:35,655   iseq2comem.c:448:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,655     448 |         if (base > TL) {
2026-03-05T18:29:35,656         |                  ^
2026-03-05T18:29:35,656   iseq2comem.c:452:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,657     452 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,657         |                          ^~
2026-03-05T18:29:35,658   iseq2comem.c:452:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,658     452 |             if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,659         |                                                  ^
2026-03-05T18:29:35,668   iseq2comem.c: In function ‘mt_shortreads2koc’:
2026-03-05T18:29:35,668   iseq2comem.c:628:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,669     628 |                     if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,669         |                                  ^~
2026-03-05T18:29:35,669   iseq2comem.c:628:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
2026-03-05T18:29:35,670     628 |                     if ((pfilter >= dim_end) || (pfilter < dim_start)) continue;
2026-03-05T18:29:35,670         |                                                          ^
2026-03-05T18:29:38,565   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp
2026-03-05T18:29:38,715   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp
2026-03-05T18:29:39,010   arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp
2026-03-05T18:29:39,780   pykssd.c: In function ‘py_dist_dispatch’:
2026-03-05T18:29:39,781   pykssd.c:339:13: warning: unused variable ‘state1’ [-Wunused-variable]
2026-03-05T18:29:39,781     339 |         int state1 = dist_dispatch(&dist_opt_val1);
2026-03-05T18:29:39,782         |             ^~~~~~
2026-03-05T18:29:39,784   pykssd.c:404:13: warning: unused variable ‘state2’ [-Wunused-variable]
2026-03-05T18:29:39,785     404 |         int state2 = dist_dispatch(&dist_opt_val2);
2026-03-05T18:29:39,785         |             ^~~~~~
2026-03-05T18:29:39,790   pykssd.c:538:13: warning: unused variable ‘state4’ [-Wunused-variable]
2026-03-05T18:29:39,791     538 |         int state4 = dist_dispatch(&dist_opt_val4);
2026-03-05T18:29:39,791         |             ^~~~~~
2026-03-05T18:29:40,133   pykssd.c: In function ‘rename_file’:
2026-03-05T18:29:40,135   pykssd.c:44:15: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
2026-03-05T18:29:40,135      44 |     newfile = strncpy(newfile, p1, len - suffix_len);
2026-03-05T18:29:40,136         |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
2026-03-05T18:29:40,136   pykssd.c:41:15: note: length computed here
2026-03-05T18:29:40,136      41 |     int len = strlen(p1);
2026-03-05T18:29:40,137         |               ^~~~~~~~~~
2026-03-05T18:29:41,198   creating build/lib.linux-armv7l-cpython-39
2026-03-05T18:29:41,208   arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -fopenmp
2026-03-05T18:29:41,578   running build_scripts
2026-03-05T18:29:41,581   creating build/scripts-3.9
2026-03-05T18:29:41,584   copying kssdutils.py -> build/scripts-3.9
2026-03-05T18:29:41,589   changing mode of build/scripts-3.9/kssdutils.py from 644 to 755
2026-03-05T18:29:41,658   /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-03-05T18:29:41,659   !!

2026-03-05T18:29:41,660           ********************************************************************************
2026-03-05T18:29:41,660           Please avoid running ``setup.py`` directly.
2026-03-05T18:29:41,661           Instead, use pypa/build, pypa/installer or other
2026-03-05T18:29:41,661           standards-based tools.

2026-03-05T18:29:41,662           This deprecation is overdue, please update your project and remove deprecated
2026-03-05T18:29:41,663           calls to avoid build errors in the future.

2026-03-05T18:29:41,664           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-03-05T18:29:41,664           ********************************************************************************

2026-03-05T18:29:41,665   !!
2026-03-05T18:29:41,665     self.initialize_options()
2026-03-05T18:29:41,721   installing to build/bdist.linux-armv7l/wheel
2026-03-05T18:29:41,721   running install
2026-03-05T18:29:41,773   running install_lib
2026-03-05T18:29:41,837   creating build/bdist.linux-armv7l/wheel
2026-03-05T18:29:41,840   copying build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/.
2026-03-05T18:29:41,864   running install_egg_info
2026-03-05T18:29:41,945   running egg_info
2026-03-05T18:29:42,008   writing kssdutils.egg-info/PKG-INFO
2026-03-05T18:29:42,015   writing dependency_links to kssdutils.egg-info/dependency_links.txt
2026-03-05T18:29:42,020   writing top-level names to kssdutils.egg-info/top_level.txt
2026-03-05T18:29:42,089   reading manifest file 'kssdutils.egg-info/SOURCES.txt'
2026-03-05T18:29:42,098   reading manifest template 'MANIFEST.in'
2026-03-05T18:29:42,120   writing manifest file 'kssdutils.egg-info/SOURCES.txt'
2026-03-05T18:29:42,123   Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.1.8-py3.9.egg-info
2026-03-05T18:29:42,144   running install_scripts
2026-03-05T18:29:42,146   creating build/bdist.linux-armv7l/wheel/kssdutils-1.1.8.data/scripts
2026-03-05T18:29:42,149   copying build/scripts-3.9/kssdutils.py -> build/bdist.linux-armv7l/wheel/kssdutils-1.1.8.data/scripts
2026-03-05T18:29:42,153   changing mode of build/bdist.linux-armv7l/wheel/kssdutils-1.1.8.data/scripts/kssdutils.py to 755
2026-03-05T18:29:42,264   creating build/bdist.linux-armv7l/wheel/kssdutils-1.1.8.dist-info/WHEEL
2026-03-05T18:29:42,270   creating '/tmp/pip-wheel-qkw75vcs/kssdutils-1.1.8-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-05T18:29:42,502   adding 'kssdtool.cpython-39-arm-linux-gnueabihf.so'
2026-03-05T18:29:42,516   adding 'kssdutils-1.1.8.data/scripts/kssdutils.py'
2026-03-05T18:29:42,520   adding 'kssdutils-1.1.8.dist-info/METADATA'
2026-03-05T18:29:42,522   adding 'kssdutils-1.1.8.dist-info/WHEEL'
2026-03-05T18:29:42,524   adding 'kssdutils-1.1.8.dist-info/dependency_links.txt'
2026-03-05T18:29:42,526   adding 'kssdutils-1.1.8.dist-info/top_level.txt'
2026-03-05T18:29:42,528   adding 'kssdutils-1.1.8.dist-info/RECORD'
2026-03-05T18:29:42,536   removing build/bdist.linux-armv7l/wheel
2026-03-05T18:29:42,786   Building wheel for kssdutils (setup.py): finished with status 'done'
2026-03-05T18:29:42,795   Created wheel for kssdutils: filename=kssdutils-1.1.8-cp39-cp39-linux_armv7l.whl size=181022 sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850
2026-03-05T18:29:42,795   Stored in directory: /tmp/pip-ephem-wheel-cache-6j527f4v/wheels/dc/c9/33/d220b520f108a010d98d7fff8fda0ffaf0652f3acca255df06
2026-03-05T18:29:42,814 Successfully built kssdutils
2026-03-05T18:29:42,843 Removed build tracker: '/tmp/pip-req-tracker-vyr76pth'