2026-03-05T21:56:39,126 Created temporary directory: /tmp/pip-ephem-wheel-cache-pa3ktnwk 2026-03-05T21:56:39,128 Created temporary directory: /tmp/pip-build-tracker-l5qcwoo9 2026-03-05T21:56:39,128 Initialized build tracking at /tmp/pip-build-tracker-l5qcwoo9 2026-03-05T21:56:39,129 Created build tracker: /tmp/pip-build-tracker-l5qcwoo9 2026-03-05T21:56:39,129 Entered build tracker: /tmp/pip-build-tracker-l5qcwoo9 2026-03-05T21:56:39,130 Created temporary directory: /tmp/pip-wheel-rng2hj5r 2026-03-05T21:56:39,133 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T21:56:39,135 Created temporary directory: /tmp/pip-ephem-wheel-cache-1im6xatf 2026-03-05T21:56:39,157 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T21:56:39,161 2 location(s) to search for versions of pipemake: 2026-03-05T21:56:39,161 * https://pypi.org/simple/pipemake/ 2026-03-05T21:56:39,161 * https://www.piwheels.org/simple/pipemake/ 2026-03-05T21:56:39,161 Fetching project page and analyzing links: https://pypi.org/simple/pipemake/ 2026-03-05T21:56:39,162 Getting page https://pypi.org/simple/pipemake/ 2026-03-05T21:56:39,163 Found index url https://pypi.org/simple 2026-03-05T21:56:39,382 Fetched page https://pypi.org/simple/pipemake/ as application/vnd.pypi.simple.v1+json 2026-03-05T21:56:39,386 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/85/3c/e85c586f56d02d8d09a521b805e78dc78729a5d6317b4c615461ce4e0a20/pipemake-1.1.6-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,387 Found link https://files.pythonhosted.org/packages/3c/27/7e6631025005005bb09c009c5dcd23dce7873acb164a96fc878604169221/pipemake-1.1.6.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.1.6 2026-03-05T21:56:39,388 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/9f/5d/fdbeb97d5e01a2eb68f58d5ed1a4d3e287df3df03ee70d32001c8f6d2f92/pipemake-1.2.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,389 Found link https://files.pythonhosted.org/packages/64/ea/98914f85bc5842004e75bc64cc484d95e744589e0b384ab5b087cb237e46/pipemake-1.2.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.0 2026-03-05T21:56:39,389 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/d0/ac/2d378195629b40d80f65e862e99fbadefd463af034f2c63fa73fe17fe24e/pipemake-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,390 Found link https://files.pythonhosted.org/packages/93/93/6baec4828f23bad04bb578ed7eb8c90f5d5b0ffe89941f64b844ebbb5cc2/pipemake-1.2.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.1 2026-03-05T21:56:39,391 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/8f/98/5d0fd76bfc506e40d4573008c88c4af019ca6085ecf0bef5328e4d3a333d/pipemake-1.2.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,392 Found link https://files.pythonhosted.org/packages/10/c5/ce42096a9450a0c2efea83f558bd47441f3f8a85a2cbb910cb9c0dcdb3dc/pipemake-1.2.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.2 2026-03-05T21:56:39,393 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/48/55/92d35f850b6d6ae6d7a675b39498aeae900d67344c49bb784f997b1414ab/pipemake-1.3.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,394 Found link https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.1 2026-03-05T21:56:39,394 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/4b/50/751338fa76583706134b98cd9b6fe166759b79436fe77e045a2e686c03b7/pipemake-1.3.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,396 Found link https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.2 2026-03-05T21:56:39,396 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/76/01/190bff93d0eb02a882c54d2617257b4e097df2466290e2ee42c1a03592d0/pipemake-1.4.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,397 Found link https://files.pythonhosted.org/packages/b9/75/7ea183d6fb23baddf532daff1c4a8de4cf9c3560cfc4acaf25f01b63abcd/pipemake-1.4.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.4.0 2026-03-05T21:56:39,398 Fetching project page and analyzing links: https://www.piwheels.org/simple/pipemake/ 2026-03-05T21:56:39,398 Getting page https://www.piwheels.org/simple/pipemake/ 2026-03-05T21:56:39,400 Found index url https://www.piwheels.org/simple 2026-03-05T21:56:39,560 Fetched page https://www.piwheels.org/simple/pipemake/ as text/html 2026-03-05T21:56:39,563 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.3.2-py3-none-any.whl#sha256=b1f455e65227cba2b0ccd066d4e3a58f807c228a1c5d23cf97f20ce457fe83cc (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,563 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.3.1-py3-none-any.whl#sha256=128c69c4397832dd2ca1ad2f2129c2473f8af3c78545d96bca0ffc1854d1a50a (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,564 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.2-py3-none-any.whl#sha256=6a60ca85f7a952b62e22fc12d78ff9f037652165d1622933685e910c950857c0 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,565 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.1-py3-none-any.whl#sha256=88a4cc17da64bec0ffefcb6cbcaf2984413a414030a104121812a9549e91e2a5 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,565 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.0-py3-none-any.whl#sha256=a967ea444e1752b8462fea812b5d0e808cae4f5797cf42deb53552aeaa23c723 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,566 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.1.6-py3-none-any.whl#sha256=52cbf72af082547b384938cb5f46a7ce2580584066283da4b7aff7400b9aa4a9 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T21:56:39,566 Skipping link: not a file: https://www.piwheels.org/simple/pipemake/ 2026-03-05T21:56:39,567 Skipping link: not a file: https://pypi.org/simple/pipemake/ 2026-03-05T21:56:39,588 Given no hashes to check 1 links for project 'pipemake': discarding no candidates 2026-03-05T21:56:39,607 Collecting pipemake==1.4.0 2026-03-05T21:56:39,610 Created temporary directory: /tmp/pip-unpack-_7fwe_ti 2026-03-05T21:56:39,822 Downloading pipemake-1.4.0.tar.gz (32 kB) 2026-03-05T21:56:39,905 Added pipemake==1.4.0 from https://files.pythonhosted.org/packages/b9/75/7ea183d6fb23baddf532daff1c4a8de4cf9c3560cfc4acaf25f01b63abcd/pipemake-1.4.0.tar.gz to build tracker '/tmp/pip-build-tracker-l5qcwoo9' 2026-03-05T21:56:39,906 Running setup.py (path:/tmp/pip-wheel-rng2hj5r/pipemake_487f388c824146cfbe3425a8317a4b03/setup.py) egg_info for package pipemake 2026-03-05T21:56:39,908 Created temporary directory: /tmp/pip-pip-egg-info-no7mm2u4 2026-03-05T21:56:39,908 Preparing metadata (setup.py): started 2026-03-05T21:56:39,909 Running command python setup.py egg_info 2026-03-05T21:56:40,830 running egg_info 2026-03-05T21:56:40,856 creating /tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info 2026-03-05T21:56:40,857 writing /tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/PKG-INFO 2026-03-05T21:56:40,860 writing dependency_links to /tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/dependency_links.txt 2026-03-05T21:56:40,862 writing entry points to /tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/entry_points.txt 2026-03-05T21:56:40,863 writing top-level names to /tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/top_level.txt 2026-03-05T21:56:40,865 writing manifest file '/tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/SOURCES.txt' 2026-03-05T21:56:40,954 reading manifest file '/tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/SOURCES.txt' 2026-03-05T21:56:40,955 adding license file 'LICENSE' 2026-03-05T21:56:40,958 writing manifest file '/tmp/pip-pip-egg-info-no7mm2u4/pipemake.egg-info/SOURCES.txt' 2026-03-05T21:56:41,065 Preparing metadata (setup.py): finished with status 'done' 2026-03-05T21:56:41,069 Source in /tmp/pip-wheel-rng2hj5r/pipemake_487f388c824146cfbe3425a8317a4b03 has version 1.4.0, which satisfies requirement pipemake==1.4.0 from https://files.pythonhosted.org/packages/b9/75/7ea183d6fb23baddf532daff1c4a8de4cf9c3560cfc4acaf25f01b63abcd/pipemake-1.4.0.tar.gz 2026-03-05T21:56:41,070 Removed pipemake==1.4.0 from https://files.pythonhosted.org/packages/b9/75/7ea183d6fb23baddf532daff1c4a8de4cf9c3560cfc4acaf25f01b63abcd/pipemake-1.4.0.tar.gz from build tracker '/tmp/pip-build-tracker-l5qcwoo9' 2026-03-05T21:56:41,076 Created temporary directory: /tmp/pip-unpack-0gjrl3_6 2026-03-05T21:56:41,076 Building wheels for collected packages: pipemake 2026-03-05T21:56:41,080 Created temporary directory: /tmp/pip-wheel-6wpdq2_d 2026-03-05T21:56:41,081 Building wheel for pipemake (setup.py): started 2026-03-05T21:56:41,082 Destination directory: /tmp/pip-wheel-6wpdq2_d 2026-03-05T21:56:41,083 Running command python setup.py bdist_wheel 2026-03-05T21:56:41,908 running bdist_wheel 2026-03-05T21:56:42,038 running build 2026-03-05T21:56:42,038 running build_py 2026-03-05T21:56:42,070 creating build/lib/pipemake 2026-03-05T21:56:42,072 copying pipemake/pathIO.py -> build/lib/pipemake 2026-03-05T21:56:42,074 copying pipemake/logger.py -> build/lib/pipemake 2026-03-05T21:56:42,075 copying pipemake/parser.py -> build/lib/pipemake 2026-03-05T21:56:42,078 copying pipemake/wildcardIO.py -> build/lib/pipemake 2026-03-05T21:56:42,080 copying pipemake/__init__.py -> build/lib/pipemake 2026-03-05T21:56:42,082 copying pipemake/processIO.py -> build/lib/pipemake 2026-03-05T21:56:42,084 copying pipemake/fileIO.py -> build/lib/pipemake 2026-03-05T21:56:42,086 copying pipemake/singularityIO.py -> build/lib/pipemake 2026-03-05T21:56:42,088 copying pipemake/pipelineIO.py -> build/lib/pipemake 2026-03-05T21:56:42,091 copying pipemake/pipemake.py -> build/lib/pipemake 2026-03-05T21:56:42,093 copying pipemake/snakemakeIO.py -> build/lib/pipemake 2026-03-05T21:56:42,124 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-05T21:56:42,124 !! 2026-03-05T21:56:42,125 ******************************************************************************** 2026-03-05T21:56:42,126 Please avoid running ``setup.py`` directly. 2026-03-05T21:56:42,126 Instead, use pypa/build, pypa/installer or other 2026-03-05T21:56:42,127 standards-based tools. 2026-03-05T21:56:42,128 This deprecation is overdue, please update your project and remove deprecated 2026-03-05T21:56:42,129 calls to avoid build errors in the future. 2026-03-05T21:56:42,130 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-05T21:56:42,130 ******************************************************************************** 2026-03-05T21:56:42,131 !! 2026-03-05T21:56:42,132 self.initialize_options() 2026-03-05T21:56:42,152 installing to build/bdist.linux-armv7l/wheel 2026-03-05T21:56:42,153 running install 2026-03-05T21:56:42,176 running install_lib 2026-03-05T21:56:42,202 creating build/bdist.linux-armv7l/wheel 2026-03-05T21:56:42,204 creating build/bdist.linux-armv7l/wheel/pipemake 2026-03-05T21:56:42,205 copying build/lib/pipemake/pathIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,207 copying build/lib/pipemake/logger.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,209 copying build/lib/pipemake/parser.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,211 copying build/lib/pipemake/wildcardIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,213 copying build/lib/pipemake/__init__.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,215 copying build/lib/pipemake/processIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,217 copying build/lib/pipemake/fileIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,219 copying build/lib/pipemake/singularityIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,221 copying build/lib/pipemake/pipelineIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,224 copying build/lib/pipemake/pipemake.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,225 copying build/lib/pipemake/snakemakeIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T21:56:42,228 running install_egg_info 2026-03-05T21:56:42,262 running egg_info 2026-03-05T21:56:42,289 writing pipemake.egg-info/PKG-INFO 2026-03-05T21:56:42,292 writing dependency_links to pipemake.egg-info/dependency_links.txt 2026-03-05T21:56:42,294 writing entry points to pipemake.egg-info/entry_points.txt 2026-03-05T21:56:42,295 deleting pipemake.egg-info/requires.txt 2026-03-05T21:56:42,296 writing top-level names to pipemake.egg-info/top_level.txt 2026-03-05T21:56:42,325 reading manifest file 'pipemake.egg-info/SOURCES.txt' 2026-03-05T21:56:42,329 adding license file 'LICENSE' 2026-03-05T21:56:42,332 writing manifest file 'pipemake.egg-info/SOURCES.txt' 2026-03-05T21:56:42,333 Copying pipemake.egg-info to build/bdist.linux-armv7l/wheel/./pipemake-1.4.0-py3.11.egg-info 2026-03-05T21:56:42,343 running install_scripts 2026-03-05T21:56:42,355 creating build/bdist.linux-armv7l/wheel/pipemake-1.4.0.dist-info/WHEEL 2026-03-05T21:56:42,358 creating '/tmp/pip-wheel-6wpdq2_d/pipemake-1.4.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T21:56:42,360 adding 'pipemake/__init__.py' 2026-03-05T21:56:42,362 adding 'pipemake/fileIO.py' 2026-03-05T21:56:42,364 adding 'pipemake/logger.py' 2026-03-05T21:56:42,366 adding 'pipemake/parser.py' 2026-03-05T21:56:42,367 adding 'pipemake/pathIO.py' 2026-03-05T21:56:42,369 adding 'pipemake/pipelineIO.py' 2026-03-05T21:56:42,371 adding 'pipemake/pipemake.py' 2026-03-05T21:56:42,372 adding 'pipemake/processIO.py' 2026-03-05T21:56:42,374 adding 'pipemake/singularityIO.py' 2026-03-05T21:56:42,379 adding 'pipemake/snakemakeIO.py' 2026-03-05T21:56:42,381 adding 'pipemake/wildcardIO.py' 2026-03-05T21:56:42,384 adding 'pipemake-1.4.0.dist-info/licenses/LICENSE' 2026-03-05T21:56:42,385 adding 'pipemake-1.4.0.dist-info/METADATA' 2026-03-05T21:56:42,386 adding 'pipemake-1.4.0.dist-info/WHEEL' 2026-03-05T21:56:42,387 adding 'pipemake-1.4.0.dist-info/entry_points.txt' 2026-03-05T21:56:42,388 adding 'pipemake-1.4.0.dist-info/top_level.txt' 2026-03-05T21:56:42,389 adding 'pipemake-1.4.0.dist-info/RECORD' 2026-03-05T21:56:42,390 removing build/bdist.linux-armv7l/wheel 2026-03-05T21:56:42,504 Building wheel for pipemake (setup.py): finished with status 'done' 2026-03-05T21:56:42,507 Created wheel for pipemake: filename=pipemake-1.4.0-py3-none-any.whl size=28396 sha256=236e35770bb8d8159589fb0bca7e220c7ec67c090cd12f539285ef7e6b6815b8 2026-03-05T21:56:42,508 Stored in directory: /tmp/pip-ephem-wheel-cache-1im6xatf/wheels/d8/f3/a4/df3b250c52c7d579d27112ca3b6c364c2d447142d57ea02820 2026-03-05T21:56:42,517 Successfully built pipemake 2026-03-05T21:56:42,521 Removed build tracker: '/tmp/pip-build-tracker-l5qcwoo9'