2026-03-05T23:00:13,892 Created temporary directory: /tmp/pip-ephem-wheel-cache-dahsx8u6 2026-03-05T23:00:13,894 Created temporary directory: /tmp/pip-build-tracker-90uwmn0m 2026-03-05T23:00:13,895 Initialized build tracking at /tmp/pip-build-tracker-90uwmn0m 2026-03-05T23:00:13,895 Created build tracker: /tmp/pip-build-tracker-90uwmn0m 2026-03-05T23:00:13,896 Entered build tracker: /tmp/pip-build-tracker-90uwmn0m 2026-03-05T23:00:13,897 Created temporary directory: /tmp/pip-wheel-w9av4e5o 2026-03-05T23:00:13,899 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-05T23:00:13,902 Created temporary directory: /tmp/pip-ephem-wheel-cache-pmniwgai 2026-03-05T23:00:13,927 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-05T23:00:13,931 2 location(s) to search for versions of pipemake: 2026-03-05T23:00:13,931 * https://pypi.org/simple/pipemake/ 2026-03-05T23:00:13,931 * https://www.piwheels.org/simple/pipemake/ 2026-03-05T23:00:13,932 Fetching project page and analyzing links: https://pypi.org/simple/pipemake/ 2026-03-05T23:00:13,933 Getting page https://pypi.org/simple/pipemake/ 2026-03-05T23:00:13,934 Found index url https://pypi.org/simple 2026-03-05T23:00:14,149 Fetched page https://pypi.org/simple/pipemake/ as application/vnd.pypi.simple.v1+json 2026-03-05T23:00:14,154 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/85/3c/e85c586f56d02d8d09a521b805e78dc78729a5d6317b4c615461ce4e0a20/pipemake-1.1.6-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,155 Found link https://files.pythonhosted.org/packages/3c/27/7e6631025005005bb09c009c5dcd23dce7873acb164a96fc878604169221/pipemake-1.1.6.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.1.6 2026-03-05T23:00:14,156 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/9f/5d/fdbeb97d5e01a2eb68f58d5ed1a4d3e287df3df03ee70d32001c8f6d2f92/pipemake-1.2.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,157 Found link https://files.pythonhosted.org/packages/64/ea/98914f85bc5842004e75bc64cc484d95e744589e0b384ab5b087cb237e46/pipemake-1.2.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.0 2026-03-05T23:00:14,158 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/d0/ac/2d378195629b40d80f65e862e99fbadefd463af034f2c63fa73fe17fe24e/pipemake-1.2.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,159 Found link https://files.pythonhosted.org/packages/93/93/6baec4828f23bad04bb578ed7eb8c90f5d5b0ffe89941f64b844ebbb5cc2/pipemake-1.2.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.1 2026-03-05T23:00:14,159 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/8f/98/5d0fd76bfc506e40d4573008c88c4af019ca6085ecf0bef5328e4d3a333d/pipemake-1.2.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,160 Found link https://files.pythonhosted.org/packages/10/c5/ce42096a9450a0c2efea83f558bd47441f3f8a85a2cbb910cb9c0dcdb3dc/pipemake-1.2.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.2.2 2026-03-05T23:00:14,161 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/48/55/92d35f850b6d6ae6d7a675b39498aeae900d67344c49bb784f997b1414ab/pipemake-1.3.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,162 Found link https://files.pythonhosted.org/packages/aa/13/f9fc4da5f2fbe7116a5ee07d8465050aa3d8243017caed196c9823af09de/pipemake-1.3.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.1 2026-03-05T23:00:14,163 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/4b/50/751338fa76583706134b98cd9b6fe166759b79436fe77e045a2e686c03b7/pipemake-1.3.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,164 Found link https://files.pythonhosted.org/packages/31/ca/f24ac5a4d14c1f734e992dbefacb37f6b8a3575015a32032fe5e7cd82e4e/pipemake-1.3.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.3.2 2026-03-05T23:00:14,165 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/76/01/190bff93d0eb02a882c54d2617257b4e097df2466290e2ee42c1a03592d0/pipemake-1.4.0-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,165 Found link https://files.pythonhosted.org/packages/b9/75/7ea183d6fb23baddf532daff1c4a8de4cf9c3560cfc4acaf25f01b63abcd/pipemake-1.4.0.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.4.0 2026-03-05T23:00:14,166 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/83/42/c694d605614fb42a181a597d29600bc0dce5a397e6d97458a84467fdb5c9/pipemake-1.4.1-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,167 Found link https://files.pythonhosted.org/packages/a7/d0/975d78ea56b1233d27a3a28fff4f2ad40ac4f8c5f558a66c0901e2e5f1ff/pipemake-1.4.1.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.4.1 2026-03-05T23:00:14,168 Skipping link: No binaries permitted for pipemake: https://files.pythonhosted.org/packages/63/f3/b5a260abfdfcf3b9ae8cb8790936677b9cee8dea6875f4532204750d76f4/pipemake-1.4.2-py3-none-any.whl (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,169 Found link https://files.pythonhosted.org/packages/0b/be/c0c0b9e3127d404d97198dff02da23374b14f636e69f2cf153c7a323bc75/pipemake-1.4.2.tar.gz (from https://pypi.org/simple/pipemake/) (requires-python:>=3.7), version: 1.4.2 2026-03-05T23:00:14,170 Fetching project page and analyzing links: https://www.piwheels.org/simple/pipemake/ 2026-03-05T23:00:14,170 Getting page https://www.piwheels.org/simple/pipemake/ 2026-03-05T23:00:14,172 Found index url https://www.piwheels.org/simple 2026-03-05T23:00:14,329 Fetched page https://www.piwheels.org/simple/pipemake/ as text/html 2026-03-05T23:00:14,333 Skipping link: No binaries permitted for pipemake: https://www.piwheels.org/simple/pipemake/pipemake-1.4.0-py3-none-any.whl#sha256=236e35770bb8d8159589fb0bca7e220c7ec67c090cd12f539285ef7e6b6815b8 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,334 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.3.2-py3-none-any.whl#sha256=b1f455e65227cba2b0ccd066d4e3a58f807c228a1c5d23cf97f20ce457fe83cc (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,334 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.3.1-py3-none-any.whl#sha256=128c69c4397832dd2ca1ad2f2129c2473f8af3c78545d96bca0ffc1854d1a50a (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,335 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.2-py3-none-any.whl#sha256=6a60ca85f7a952b62e22fc12d78ff9f037652165d1622933685e910c950857c0 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,336 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.1-py3-none-any.whl#sha256=88a4cc17da64bec0ffefcb6cbcaf2984413a414030a104121812a9549e91e2a5 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,336 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.2.0-py3-none-any.whl#sha256=a967ea444e1752b8462fea812b5d0e808cae4f5797cf42deb53552aeaa23c723 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,337 Skipping link: No binaries permitted for pipemake: https://archive1.piwheels.org/simple/pipemake/pipemake-1.1.6-py3-none-any.whl#sha256=52cbf72af082547b384938cb5f46a7ce2580584066283da4b7aff7400b9aa4a9 (from https://www.piwheels.org/simple/pipemake/) (requires-python:>=3.7) 2026-03-05T23:00:14,338 Skipping link: not a file: https://www.piwheels.org/simple/pipemake/ 2026-03-05T23:00:14,338 Skipping link: not a file: https://pypi.org/simple/pipemake/ 2026-03-05T23:00:14,358 Given no hashes to check 1 links for project 'pipemake': discarding no candidates 2026-03-05T23:00:14,376 Collecting pipemake==1.4.1 2026-03-05T23:00:14,378 Created temporary directory: /tmp/pip-unpack-chuuy5h2 2026-03-05T23:00:14,591 Downloading pipemake-1.4.1.tar.gz (31 kB) 2026-03-05T23:00:14,677 Added pipemake==1.4.1 from https://files.pythonhosted.org/packages/a7/d0/975d78ea56b1233d27a3a28fff4f2ad40ac4f8c5f558a66c0901e2e5f1ff/pipemake-1.4.1.tar.gz to build tracker '/tmp/pip-build-tracker-90uwmn0m' 2026-03-05T23:00:14,679 Running setup.py (path:/tmp/pip-wheel-w9av4e5o/pipemake_09ee894f96a0459bb3a1f795a8fefd69/setup.py) egg_info for package pipemake 2026-03-05T23:00:14,680 Created temporary directory: /tmp/pip-pip-egg-info-quu7jck8 2026-03-05T23:00:14,680 Preparing metadata (setup.py): started 2026-03-05T23:00:14,681 Running command python setup.py egg_info 2026-03-05T23:00:15,543 running egg_info 2026-03-05T23:00:15,570 creating /tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info 2026-03-05T23:00:15,571 writing /tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/PKG-INFO 2026-03-05T23:00:15,574 writing dependency_links to /tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/dependency_links.txt 2026-03-05T23:00:15,576 writing entry points to /tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/entry_points.txt 2026-03-05T23:00:15,577 writing top-level names to /tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/top_level.txt 2026-03-05T23:00:15,579 writing manifest file '/tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/SOURCES.txt' 2026-03-05T23:00:15,666 reading manifest file '/tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/SOURCES.txt' 2026-03-05T23:00:15,667 adding license file 'LICENSE' 2026-03-05T23:00:15,670 writing manifest file '/tmp/pip-pip-egg-info-quu7jck8/pipemake.egg-info/SOURCES.txt' 2026-03-05T23:00:15,777 Preparing metadata (setup.py): finished with status 'done' 2026-03-05T23:00:15,781 Source in /tmp/pip-wheel-w9av4e5o/pipemake_09ee894f96a0459bb3a1f795a8fefd69 has version 1.4.1, which satisfies requirement pipemake==1.4.1 from https://files.pythonhosted.org/packages/a7/d0/975d78ea56b1233d27a3a28fff4f2ad40ac4f8c5f558a66c0901e2e5f1ff/pipemake-1.4.1.tar.gz 2026-03-05T23:00:15,782 Removed pipemake==1.4.1 from https://files.pythonhosted.org/packages/a7/d0/975d78ea56b1233d27a3a28fff4f2ad40ac4f8c5f558a66c0901e2e5f1ff/pipemake-1.4.1.tar.gz from build tracker '/tmp/pip-build-tracker-90uwmn0m' 2026-03-05T23:00:15,788 Created temporary directory: /tmp/pip-unpack-2l6pwg43 2026-03-05T23:00:15,788 Building wheels for collected packages: pipemake 2026-03-05T23:00:15,793 Created temporary directory: /tmp/pip-wheel-vrnirnxq 2026-03-05T23:00:15,793 Building wheel for pipemake (setup.py): started 2026-03-05T23:00:15,795 Destination directory: /tmp/pip-wheel-vrnirnxq 2026-03-05T23:00:15,795 Running command python setup.py bdist_wheel 2026-03-05T23:00:16,634 running bdist_wheel 2026-03-05T23:00:16,764 running build 2026-03-05T23:00:16,765 running build_py 2026-03-05T23:00:16,798 creating build/lib/pipemake 2026-03-05T23:00:16,800 copying pipemake/wildcardIO.py -> build/lib/pipemake 2026-03-05T23:00:16,804 copying pipemake/pipemake.py -> build/lib/pipemake 2026-03-05T23:00:16,806 copying pipemake/parser.py -> build/lib/pipemake 2026-03-05T23:00:16,809 copying pipemake/pipelineIO.py -> build/lib/pipemake 2026-03-05T23:00:16,811 copying pipemake/pathIO.py -> build/lib/pipemake 2026-03-05T23:00:16,813 copying pipemake/processIO.py -> build/lib/pipemake 2026-03-05T23:00:16,815 copying pipemake/logger.py -> build/lib/pipemake 2026-03-05T23:00:16,817 copying pipemake/__init__.py -> build/lib/pipemake 2026-03-05T23:00:16,819 copying pipemake/snakemakeIO.py -> build/lib/pipemake 2026-03-05T23:00:16,821 copying pipemake/fileIO.py -> build/lib/pipemake 2026-03-05T23:00:16,824 copying pipemake/singularityIO.py -> build/lib/pipemake 2026-03-05T23:00:16,854 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-05T23:00:16,855 !! 2026-03-05T23:00:16,855 ******************************************************************************** 2026-03-05T23:00:16,856 Please avoid running ``setup.py`` directly. 2026-03-05T23:00:16,856 Instead, use pypa/build, pypa/installer or other 2026-03-05T23:00:16,857 standards-based tools. 2026-03-05T23:00:16,858 This deprecation is overdue, please update your project and remove deprecated 2026-03-05T23:00:16,858 calls to avoid build errors in the future. 2026-03-05T23:00:16,859 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-05T23:00:16,859 ******************************************************************************** 2026-03-05T23:00:16,861 !! 2026-03-05T23:00:16,861 self.initialize_options() 2026-03-05T23:00:16,881 installing to build/bdist.linux-armv7l/wheel 2026-03-05T23:00:16,882 running install 2026-03-05T23:00:16,906 running install_lib 2026-03-05T23:00:16,932 creating build/bdist.linux-armv7l/wheel 2026-03-05T23:00:16,934 creating build/bdist.linux-armv7l/wheel/pipemake 2026-03-05T23:00:16,935 copying build/lib/pipemake/wildcardIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,938 copying build/lib/pipemake/pipemake.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,940 copying build/lib/pipemake/parser.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,942 copying build/lib/pipemake/pipelineIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,945 copying build/lib/pipemake/pathIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,946 copying build/lib/pipemake/processIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,948 copying build/lib/pipemake/logger.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,950 copying build/lib/pipemake/__init__.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,952 copying build/lib/pipemake/snakemakeIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,955 copying build/lib/pipemake/fileIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,958 copying build/lib/pipemake/singularityIO.py -> build/bdist.linux-armv7l/wheel/./pipemake 2026-03-05T23:00:16,959 running install_egg_info 2026-03-05T23:00:16,993 running egg_info 2026-03-05T23:00:17,020 writing pipemake.egg-info/PKG-INFO 2026-03-05T23:00:17,022 writing dependency_links to pipemake.egg-info/dependency_links.txt 2026-03-05T23:00:17,024 writing entry points to pipemake.egg-info/entry_points.txt 2026-03-05T23:00:17,025 deleting pipemake.egg-info/requires.txt 2026-03-05T23:00:17,026 writing top-level names to pipemake.egg-info/top_level.txt 2026-03-05T23:00:17,056 reading manifest file 'pipemake.egg-info/SOURCES.txt' 2026-03-05T23:00:17,060 adding license file 'LICENSE' 2026-03-05T23:00:17,063 writing manifest file 'pipemake.egg-info/SOURCES.txt' 2026-03-05T23:00:17,064 Copying pipemake.egg-info to build/bdist.linux-armv7l/wheel/./pipemake-1.4.1-py3.11.egg-info 2026-03-05T23:00:17,073 running install_scripts 2026-03-05T23:00:17,085 creating build/bdist.linux-armv7l/wheel/pipemake-1.4.1.dist-info/WHEEL 2026-03-05T23:00:17,088 creating '/tmp/pip-wheel-vrnirnxq/pipemake-1.4.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-05T23:00:17,090 adding 'pipemake/__init__.py' 2026-03-05T23:00:17,092 adding 'pipemake/fileIO.py' 2026-03-05T23:00:17,093 adding 'pipemake/logger.py' 2026-03-05T23:00:17,095 adding 'pipemake/parser.py' 2026-03-05T23:00:17,096 adding 'pipemake/pathIO.py' 2026-03-05T23:00:17,098 adding 'pipemake/pipelineIO.py' 2026-03-05T23:00:17,100 adding 'pipemake/pipemake.py' 2026-03-05T23:00:17,101 adding 'pipemake/processIO.py' 2026-03-05T23:00:17,102 adding 'pipemake/singularityIO.py' 2026-03-05T23:00:17,107 adding 'pipemake/snakemakeIO.py' 2026-03-05T23:00:17,109 adding 'pipemake/wildcardIO.py' 2026-03-05T23:00:17,112 adding 'pipemake-1.4.1.dist-info/licenses/LICENSE' 2026-03-05T23:00:17,113 adding 'pipemake-1.4.1.dist-info/METADATA' 2026-03-05T23:00:17,114 adding 'pipemake-1.4.1.dist-info/WHEEL' 2026-03-05T23:00:17,114 adding 'pipemake-1.4.1.dist-info/entry_points.txt' 2026-03-05T23:00:17,115 adding 'pipemake-1.4.1.dist-info/top_level.txt' 2026-03-05T23:00:17,116 adding 'pipemake-1.4.1.dist-info/RECORD' 2026-03-05T23:00:17,118 removing build/bdist.linux-armv7l/wheel 2026-03-05T23:00:17,233 Building wheel for pipemake (setup.py): finished with status 'done' 2026-03-05T23:00:17,236 Created wheel for pipemake: filename=pipemake-1.4.1-py3-none-any.whl size=28402 sha256=782bf5157649ce518bdd81bf8970c295fa52d24d97539ca993aa8322297ac363 2026-03-05T23:00:17,237 Stored in directory: /tmp/pip-ephem-wheel-cache-pmniwgai/wheels/70/ce/ae/dcdd9434eeef70fa1d79dbd70ebc12ba59d19e06a60dfb1481 2026-03-05T23:00:17,248 Successfully built pipemake 2026-03-05T23:00:17,251 Removed build tracker: '/tmp/pip-build-tracker-90uwmn0m'