2026-03-06T10:14:21,994 Created temporary directory: /tmp/pip-build-tracker-8r97m1qc 2026-03-06T10:14:21,995 Initialized build tracking at /tmp/pip-build-tracker-8r97m1qc 2026-03-06T10:14:21,995 Created build tracker: /tmp/pip-build-tracker-8r97m1qc 2026-03-06T10:14:21,995 Entered build tracker: /tmp/pip-build-tracker-8r97m1qc 2026-03-06T10:14:21,996 Created temporary directory: /tmp/pip-wheel-io7e8_be 2026-03-06T10:14:21,999 Created temporary directory: /tmp/pip-ephem-wheel-cache-wcpldb2l 2026-03-06T10:14:22,058 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-06T10:14:22,060 2 location(s) to search for versions of kssdutils: 2026-03-06T10:14:22,060 * https://pypi.org/simple/kssdutils/ 2026-03-06T10:14:22,060 * https://www.piwheels.org/simple/kssdutils/ 2026-03-06T10:14:22,060 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2026-03-06T10:14:22,061 Getting page https://pypi.org/simple/kssdutils/ 2026-03-06T10:14:22,062 Found index url https://pypi.org/simple/ 2026-03-06T10:14:22,132 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2026-03-06T10:14:22,134 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2026-03-06T10:14:22,134 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2026-03-06T10:14:22,135 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2026-03-06T10:14:22,135 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2026-03-06T10:14:22,135 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2026-03-06T10:14:22,135 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2026-03-06T10:14:22,136 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2026-03-06T10:14:22,136 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2026-03-06T10:14:22,136 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2026-03-06T10:14:22,136 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2026-03-06T10:14:22,136 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2026-03-06T10:14:22,137 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2026-03-06T10:14:22,137 Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.7 2026-03-06T10:14:22,137 Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.8 2026-03-06T10:14:22,137 Found link https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.9 2026-03-06T10:14:22,138 Found link https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.2.0 2026-03-06T10:14:22,138 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2026-03-06T10:14:22,138 Getting page https://www.piwheels.org/simple/kssdutils/ 2026-03-06T10:14:22,139 Found index url https://www.piwheels.org/simple/ 2026-03-06T10:14:22,228 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2026-03-06T10:14:22,240 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv6l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,241 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv7l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,241 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,241 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,241 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,241 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,242 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,243 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,244 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,245 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv6l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp39-cp39-linux_armv7l.whl#sha256=8a0994f4f968bd25192b59f99dc7d482fae725cc841190d55a79c2ec3c47e0cd (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv6l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,246 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,247 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,248 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,249 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,250 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,250 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T10:14:22,250 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2026-03-06T10:14:22,250 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2026-03-06T10:14:22,276 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2026-03-06T10:14:22,277 Collecting kssdutils==1.2.0 2026-03-06T10:14:22,278 Created temporary directory: /tmp/pip-unpack-1u6xg6qq 2026-03-06T10:14:22,416 Downloading kssdutils-1.2.0.tar.gz (45 kB) 2026-03-06T10:14:22,464 Added kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-8r97m1qc' 2026-03-06T10:14:22,466 Running setup.py (path:/tmp/pip-wheel-io7e8_be/kssdutils_efe8d559f06b46358d3fc124460537b9/setup.py) egg_info for package kssdutils 2026-03-06T10:14:22,466 Created temporary directory: /tmp/pip-pip-egg-info-iv6pn_kz 2026-03-06T10:14:22,466 Preparing metadata (setup.py): started 2026-03-06T10:14:22,467 Running command python setup.py egg_info 2026-03-06T10:14:23,670 running egg_info 2026-03-06T10:14:23,744 creating /tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info 2026-03-06T10:14:23,745 writing /tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/PKG-INFO 2026-03-06T10:14:23,746 writing dependency_links to /tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/dependency_links.txt 2026-03-06T10:14:23,746 writing top-level names to /tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/top_level.txt 2026-03-06T10:14:23,747 writing manifest file '/tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/SOURCES.txt' 2026-03-06T10:14:23,971 reading manifest file '/tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/SOURCES.txt' 2026-03-06T10:14:23,972 reading manifest template 'MANIFEST.in' 2026-03-06T10:14:23,976 writing manifest file '/tmp/pip-pip-egg-info-iv6pn_kz/kssdutils.egg-info/SOURCES.txt' 2026-03-06T10:14:24,087 Preparing metadata (setup.py): finished with status 'done' 2026-03-06T10:14:24,091 Source in /tmp/pip-wheel-io7e8_be/kssdutils_efe8d559f06b46358d3fc124460537b9 has version 1.2.0, which satisfies requirement kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz 2026-03-06T10:14:24,092 Removed kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-8r97m1qc' 2026-03-06T10:14:24,094 Created temporary directory: /tmp/pip-unpack-oz17qgj1 2026-03-06T10:14:24,094 Created temporary directory: /tmp/pip-unpack-puzlne9f 2026-03-06T10:14:24,095 Building wheels for collected packages: kssdutils 2026-03-06T10:14:24,096 Created temporary directory: /tmp/pip-wheel-0jia__w2 2026-03-06T10:14:24,096 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2026-03-06T10:14:24,097 Building wheel for kssdutils (setup.py): started 2026-03-06T10:14:24,098 Destination directory: /tmp/pip-wheel-0jia__w2 2026-03-06T10:14:24,098 Running command python setup.py bdist_wheel 2026-03-06T10:14:25,233 running bdist_wheel 2026-03-06T10:14:25,525 running build 2026-03-06T10:14:25,525 running build_py 2026-03-06T10:14:25,601 creating build/lib.linux-armv7l-cpython-313 2026-03-06T10:14:25,601 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2026-03-06T10:14:25,602 running egg_info 2026-03-06T10:14:25,674 writing kssdutils.egg-info/PKG-INFO 2026-03-06T10:14:25,676 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2026-03-06T10:14:25,676 writing top-level names to kssdutils.egg-info/top_level.txt 2026-03-06T10:14:25,750 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T10:14:25,752 reading manifest template 'MANIFEST.in' 2026-03-06T10:14:25,756 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T10:14:25,757 running build_ext 2026-03-06T10:14:26,172 building 'kssdtool' extension 2026-03-06T10:14:26,175 creating build/temp.linux-armv7l-cpython-313 2026-03-06T10:14:26,176 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2026-03-06T10:14:26,357 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-03-06T10:14:26,357 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T10:14:26,357 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-03-06T10:14:26,357 | ^ 2026-03-06T10:14:26,360 co2mco.c: In function ‘co2unitllmco’: 2026-03-06T10:14:26,361 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T10:14:26,361 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-03-06T10:14:26,361 | ^ 2026-03-06T10:14:27,041 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2026-03-06T10:14:27,421 command_composite.c: In function ‘get_species_abundance’: 2026-03-06T10:14:27,422 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T10:14:27,422 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-03-06T10:14:27,422 | ^~ 2026-03-06T10:14:27,422 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T10:14:27,422 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-03-06T10:14:27,422 | ^~ 2026-03-06T10:14:27,422 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:27,423 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T10:14:27,423 | ^ 2026-03-06T10:14:27,423 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:27,423 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T10:14:27,423 | ^~~~~~~~~~ 2026-03-06T10:14:27,423 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T10:14:27,423 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T10:14:27,423 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,423 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:27,423 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T10:14:27,424 | ^ 2026-03-06T10:14:27,424 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:27,424 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T10:14:27,424 | ^~~~~~~~~~ 2026-03-06T10:14:27,424 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T10:14:27,424 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T10:14:27,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,424 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:27,424 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,424 | ^ 2026-03-06T10:14:27,424 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:27,425 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,425 | ^~~~~~~~~~ 2026-03-06T10:14:27,425 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T10:14:27,425 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,425 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,425 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:27,425 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T10:14:27,425 | ^ 2026-03-06T10:14:27,425 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:27,425 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T10:14:27,426 | ^~~~~~~~~~ 2026-03-06T10:14:27,426 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T10:14:27,426 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T10:14:27,426 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,426 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:27,426 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,426 | ^ 2026-03-06T10:14:27,426 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:27,426 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,426 | ^~~~~~~~~~~~ 2026-03-06T10:14:27,427 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2026-03-06T10:14:27,427 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T10:14:27,427 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,672 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2026-03-06T10:14:27,898 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T10:14:27,899 command_dist.c:664:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,899 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,900 | ~~^ 2026-03-06T10:14:27,900 | | 2026-03-06T10:14:27,900 | long unsigned int 2026-03-06T10:14:27,900 | %u 2026-03-06T10:14:27,900 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,900 | ~~~~~~~ 2026-03-06T10:14:27,900 | | 2026-03-06T10:14:27,900 | size_t {aka unsigned int} 2026-03-06T10:14:27,901 command_dist.c:664:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,901 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,901 | ~~^ 2026-03-06T10:14:27,901 | | 2026-03-06T10:14:27,902 | long unsigned int 2026-03-06T10:14:27,902 | %u 2026-03-06T10:14:27,902 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,902 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T10:14:27,902 | ~~~~~~~~~ 2026-03-06T10:14:27,902 | | 2026-03-06T10:14:27,902 | size_t {aka unsigned int} 2026-03-06T10:14:27,903 command_dist.c:664:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T10:14:27,903 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,903 | ~~^ 2026-03-06T10:14:27,903 | | 2026-03-06T10:14:27,903 | long unsigned int 2026-03-06T10:14:27,904 | %u 2026-03-06T10:14:27,904 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,904 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T10:14:27,904 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,904 | | 2026-03-06T10:14:27,904 | unsigned int 2026-03-06T10:14:27,906 command_dist.c:702:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T10:14:27,906 702 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-03-06T10:14:27,906 | ^ 2026-03-06T10:14:27,913 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T10:14:27,915 command_dist.c:850:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,916 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T10:14:27,916 | ~~^ ~~~~~~~ 2026-03-06T10:14:27,916 | | | 2026-03-06T10:14:27,916 | long unsigned int size_t {aka unsigned int} 2026-03-06T10:14:27,916 | %u 2026-03-06T10:14:27,918 command_dist.c:850:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,918 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T10:14:27,918 | ~~^ 2026-03-06T10:14:27,918 | | 2026-03-06T10:14:27,918 | long unsigned int 2026-03-06T10:14:27,918 | %u 2026-03-06T10:14:27,919 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T10:14:27,919 | ~~~~~~~~~ 2026-03-06T10:14:27,919 | | 2026-03-06T10:14:27,919 | size_t {aka unsigned int} 2026-03-06T10:14:27,920 command_dist.c:850:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T10:14:27,921 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T10:14:27,921 | ~~^ 2026-03-06T10:14:27,921 | | 2026-03-06T10:14:27,921 | long unsigned int 2026-03-06T10:14:27,921 | %u 2026-03-06T10:14:27,921 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T10:14:27,921 852 | (size_t) b * unitsz_distf_mapped); 2026-03-06T10:14:27,921 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,921 | | 2026-03-06T10:14:27,921 | unsigned int 2026-03-06T10:14:27,923 command_dist.c:797:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-03-06T10:14:27,923 797 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-03-06T10:14:27,923 | ^~~~~~~ 2026-03-06T10:14:27,924 command_dist.c:796:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-03-06T10:14:27,924 796 | struct stat cbd_fcode_stat; 2026-03-06T10:14:27,924 | ^~~~~~~~~~~~~~ 2026-03-06T10:14:27,925 command_dist.c:795:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-03-06T10:14:27,925 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T10:14:27,925 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,926 command_dist.c:795:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-03-06T10:14:27,926 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T10:14:27,926 | ^~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,933 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T10:14:27,935 command_dist.c:1005:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,935 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,935 | ~~^ 2026-03-06T10:14:27,936 | | 2026-03-06T10:14:27,936 | long unsigned int 2026-03-06T10:14:27,936 | %u 2026-03-06T10:14:27,936 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,936 | ~~~~~~~ 2026-03-06T10:14:27,936 | | 2026-03-06T10:14:27,936 | size_t {aka unsigned int} 2026-03-06T10:14:27,938 command_dist.c:1005:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:27,938 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,938 | ~~^ 2026-03-06T10:14:27,939 | | 2026-03-06T10:14:27,939 | long unsigned int 2026-03-06T10:14:27,939 | %u 2026-03-06T10:14:27,939 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,939 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T10:14:27,939 | ~~~~~~~~~ 2026-03-06T10:14:27,939 | | 2026-03-06T10:14:27,939 | size_t {aka unsigned int} 2026-03-06T10:14:27,941 command_dist.c:1005:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T10:14:27,941 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T10:14:27,941 | ~~^ 2026-03-06T10:14:27,941 | | 2026-03-06T10:14:27,942 | long unsigned int 2026-03-06T10:14:27,942 | %u 2026-03-06T10:14:27,942 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T10:14:27,942 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T10:14:27,942 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:27,942 | | 2026-03-06T10:14:27,942 | unsigned int 2026-03-06T10:14:27,947 command_dist.c: In function ‘mco_co_dist_core’: 2026-03-06T10:14:27,948 command_dist.c:1103:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T10:14:27,948 1103 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-03-06T10:14:27,948 | ^ 2026-03-06T10:14:27,949 command_dist.c: In function ‘fname_dist_print’: 2026-03-06T10:14:27,951 command_dist.c:1150:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2026-03-06T10:14:27,951 1150 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2026-03-06T10:14:27,951 | ^ 2026-03-06T10:14:27,956 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-03-06T10:14:27,957 command_dist.c:1226:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T10:14:27,957 1226 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T10:14:27,957 | ^ 2026-03-06T10:14:27,959 command_dist.c:1232:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T10:14:27,960 1232 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T10:14:27,960 | ^ 2026-03-06T10:14:27,965 command_dist.c: In function ‘dist_print_nobin’: 2026-03-06T10:14:27,967 command_dist.c:1322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T10:14:27,967 1322 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-03-06T10:14:27,967 | ^ 2026-03-06T10:14:27,970 command_dist.c:1343:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T10:14:27,970 1343 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T10:14:27,970 | ^ 2026-03-06T10:14:27,972 command_dist.c:1369:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T10:14:27,973 1369 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T10:14:27,973 | ^ 2026-03-06T10:14:28,365 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-03-06T10:14:28,366 command_dist.c:390:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2026-03-06T10:14:28,366 390 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-03-06T10:14:28,366 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:28,366 command_dist.c:362:40: note: ‘com_abund_fp’ was declared here 2026-03-06T10:14:28,366 362 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-03-06T10:14:28,366 | ^~~~~~~~~~~~ 2026-03-06T10:14:29,172 command_dist.c: In function ‘get_dim_shuffle’: 2026-03-06T10:14:29,172 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-03-06T10:14:29,172 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T10:14:29,172 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:29,172 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-03-06T10:14:29,172 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T10:14:29,173 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,091 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T10:14:30,092 command_dist.c:583:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,092 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,092 | ^~ ~~~~~~~~~ 2026-03-06T10:14:30,093 command_dist.c:583:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T10:14:30,093 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,093 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,094 command_dist.c:612:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,094 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,094 | ^~~~~~~~~~~~~~~ 2026-03-06T10:14:30,095 command_dist.c:612:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T10:14:30,095 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,095 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,097 command_dist.c:668:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,097 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,097 | ^~~~~~~~~~~ 2026-03-06T10:14:30,098 command_dist.c:668:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:30,098 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,098 | ^~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,099 command_dist.c:668:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T10:14:30,099 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,099 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,100 command_dist.c:669:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,100 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,100 | ^~~~~ 2026-03-06T10:14:30,100 command_dist.c:669:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:30,100 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,101 | ^~~~~~~~~~~ 2026-03-06T10:14:30,101 command_dist.c:669:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T10:14:30,101 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,101 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,349 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T10:14:30,351 command_dist.c:750:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,351 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,351 | ^~ ~~~~~~~~~ 2026-03-06T10:14:30,352 command_dist.c:750:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T10:14:30,352 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,353 command_dist.c:777:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,353 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,353 | ^~~~~~~~~~~~~~~ 2026-03-06T10:14:30,354 command_dist.c:777:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T10:14:30,354 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,354 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,355 command_dist.c:810:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,355 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T10:14:30,355 | ^~~~~~~~~~~~~ 2026-03-06T10:14:30,356 command_dist.c:810:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T10:14:30,356 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T10:14:30,356 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,357 command_dist.c:836:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,357 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T10:14:30,358 | ^ 2026-03-06T10:14:30,359 command_dist.c:836:33: note: directive argument in the range [0, 536870912] 2026-03-06T10:14:30,359 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T10:14:30,359 | ^~~~~~~~~~ 2026-03-06T10:14:30,360 command_dist.c:836:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T10:14:30,360 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T10:14:30,360 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,361 command_dist.c:838:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,361 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T10:14:30,361 | ^ 2026-03-06T10:14:30,362 command_dist.c:838:28: note: directive argument in the range [0, 536870912] 2026-03-06T10:14:30,362 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T10:14:30,362 | ^~~~~~~~~~ 2026-03-06T10:14:30,363 command_dist.c:838:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T10:14:30,363 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T10:14:30,363 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,629 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T10:14:30,630 command_dist.c:914:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,631 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,631 | ^~ ~~~~~~~~~ 2026-03-06T10:14:30,632 command_dist.c:914:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T10:14:30,632 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T10:14:30,632 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,633 command_dist.c:943:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,633 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,633 | ^~~~~~~~~~~~~~~ 2026-03-06T10:14:30,634 command_dist.c:943:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T10:14:30,634 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T10:14:30,635 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,636 command_dist.c:977:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,636 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T10:14:30,636 | ^~~~~~~~~~~~~ 2026-03-06T10:14:30,637 command_dist.c:977:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T10:14:30,637 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T10:14:30,637 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,639 command_dist.c:1009:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,640 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,640 | ^~~~~~~~~~~ 2026-03-06T10:14:30,641 command_dist.c:1009:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:30,641 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,641 | ^~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,642 command_dist.c:1009:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T10:14:30,642 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T10:14:30,642 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,643 command_dist.c:1010:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T10:14:30,644 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,644 | ^~~~~ 2026-03-06T10:14:30,645 command_dist.c:1010:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:30,645 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,645 | ^~~~~~~~~~~ 2026-03-06T10:14:30,646 command_dist.c:1010:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T10:14:30,646 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T10:14:30,646 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,926 command_dist.c: In function ‘combine_queries’: 2026-03-06T10:14:30,928 command_dist.c:1479:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:30,928 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T10:14:30,928 | ^ 2026-03-06T10:14:30,930 command_dist.c:1479:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:30,930 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T10:14:30,930 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,932 command_dist.c:1486:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:30,932 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T10:14:30,932 | ^ 2026-03-06T10:14:30,934 command_dist.c:1486:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:30,934 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T10:14:30,934 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:30,937 command_dist.c:1590:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:30,937 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T10:14:30,937 | ^~ ~~~~~~~~ 2026-03-06T10:14:30,939 command_dist.c:1590:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T10:14:30,939 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T10:14:30,940 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:31,432 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2026-03-06T10:14:31,609 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2026-03-06T10:14:32,053 command_set.c: In function ‘sketch_operate’: 2026-03-06T10:14:32,053 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T10:14:32,054 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-03-06T10:14:32,054 | ^ 2026-03-06T10:14:32,065 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T10:14:32,066 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T10:14:32,066 457 | free(co_dstat_fpath); 2026-03-06T10:14:32,066 | ^~~~~~~~~~~~~~ 2026-03-06T10:14:32,066 In file included from kssdheaders/global_basic.h:159, 2026-03-06T10:14:32,066 from command_set.c:15: 2026-03-06T10:14:32,066 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T10:14:32,067 687 | extern void free (void *__ptr) __THROW; 2026-03-06T10:14:32,067 | ~~~~~~^~~~~ 2026-03-06T10:14:32,073 command_set.c: In function ‘grouping_genomes’: 2026-03-06T10:14:32,073 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T10:14:32,073 562 | free(co_dstat_fpath); 2026-03-06T10:14:32,073 | ^~~~~~~~~~~~~~ 2026-03-06T10:14:32,074 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T10:14:32,074 687 | extern void free (void *__ptr) __THROW; 2026-03-06T10:14:32,074 | ~~~~~~^~~~~ 2026-03-06T10:14:32,249 command_set.c: In function ‘sketch_union’: 2026-03-06T10:14:32,249 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,249 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,249 | ^ 2026-03-06T10:14:32,249 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:32,249 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,249 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,250 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,250 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,250 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,250 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,250 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,250 | ^~~~~~~~~~ 2026-03-06T10:14:32,250 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,250 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,250 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,251 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,251 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T10:14:32,251 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:32,251 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,251 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T10:14:32,251 | ^~~~~~~~~~ 2026-03-06T10:14:32,251 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T10:14:32,251 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T10:14:32,251 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,380 command_set.c: In function ‘sketch_operate’: 2026-03-06T10:14:32,380 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,380 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T10:14:32,380 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:32,380 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,380 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T10:14:32,381 | ^~~~~~~~~~ 2026-03-06T10:14:32,381 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T10:14:32,381 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T10:14:32,381 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,381 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,381 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T10:14:32,381 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,381 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,381 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T10:14:32,381 | ^~~~~~~~~~ 2026-03-06T10:14:32,381 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T10:14:32,382 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T10:14:32,382 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,382 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,382 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,382 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,382 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,382 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,382 | ^~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,382 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:32,382 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,382 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,383 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,383 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,383 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,383 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,383 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,383 | ^~~~~~~~~~ 2026-03-06T10:14:32,383 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,383 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T10:14:32,383 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,383 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,383 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,384 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,384 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,384 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,384 | ^~~~~~~~~~ 2026-03-06T10:14:32,384 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,384 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,384 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,384 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,384 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,384 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,384 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,385 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,385 | ^~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,385 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:32,385 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T10:14:32,385 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,385 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,385 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,385 | ^ 2026-03-06T10:14:32,385 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:32,385 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,386 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,553 command_set.c: In function ‘uniq_sketch_union’: 2026-03-06T10:14:32,553 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,553 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-06T10:14:32,553 | ^ 2026-03-06T10:14:32,553 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2026-03-06T10:14:32,553 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-06T10:14:32,553 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,554 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,554 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,554 | ^ 2026-03-06T10:14:32,554 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:32,554 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,554 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,554 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,554 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,555 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,555 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,555 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,555 | ^~~~~~~~~~ 2026-03-06T10:14:32,555 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,555 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T10:14:32,555 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,556 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,556 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T10:14:32,556 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,556 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,556 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T10:14:32,556 | ^~~~~~~~~~ 2026-03-06T10:14:32,556 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T10:14:32,556 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T10:14:32,556 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,696 command_set.c: In function ‘combin_pans’: 2026-03-06T10:14:32,697 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,697 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,697 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,697 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-03-06T10:14:32,697 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,698 | ^~~~~~~~~~ 2026-03-06T10:14:32,698 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-03-06T10:14:32,698 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,698 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,698 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,698 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,698 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:32,699 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-03-06T10:14:32,699 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,699 | ^~~~~~~~~~ 2026-03-06T10:14:32,699 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-03-06T10:14:32,699 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,699 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,700 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,700 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,700 | ^ 2026-03-06T10:14:32,700 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:32,700 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,701 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,916 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T10:14:32,917 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,917 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:32,917 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,918 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,918 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:32,918 | ^~~~~~~~~~ 2026-03-06T10:14:32,918 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,918 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:32,918 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,919 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,919 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:32,919 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:32,920 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,920 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:32,920 | ^~~~~~~~~~ 2026-03-06T10:14:32,920 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:32,920 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:32,921 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,921 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,921 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,921 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:32,922 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,922 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,922 | ^~~~~~~~~~ 2026-03-06T10:14:32,922 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:32,923 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:32,923 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,924 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:32,924 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,924 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:32,924 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:32,924 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,924 | ^~~~~~~~~~ 2026-03-06T10:14:32,925 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:32,925 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:32,925 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:32,926 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:32,926 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,926 | ^ 2026-03-06T10:14:32,926 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:32,926 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:32,926 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,167 command_set.c: In function ‘grouping_genomes’: 2026-03-06T10:14:33,168 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:33,168 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:33,168 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:33,169 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:33,169 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:33,169 | ^~~~~~~~~~ 2026-03-06T10:14:33,170 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:33,170 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T10:14:33,170 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,171 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:33,171 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:33,171 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:33,172 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:33,172 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:33,172 | ^~~~~~~~~~ 2026-03-06T10:14:33,172 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:33,172 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T10:14:33,173 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,174 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:33,174 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:33,174 | ^~ ~~~~~~~~~~~ 2026-03-06T10:14:33,175 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:33,175 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:33,175 | ^~~~~~~~~~ 2026-03-06T10:14:33,175 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T10:14:33,175 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T10:14:33,176 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,177 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T10:14:33,177 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:33,177 | ^~ ~~~~~~~~~~ 2026-03-06T10:14:33,177 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T10:14:33,178 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:33,178 | ^~~~~~~~~~ 2026-03-06T10:14:33,178 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T10:14:33,178 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T10:14:33,178 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,179 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T10:14:33,179 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:33,179 | ^ 2026-03-06T10:14:33,180 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T10:14:33,180 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T10:14:33,180 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T10:14:33,463 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2026-03-06T10:14:33,775 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2026-03-06T10:14:33,945 global_basic.c: In function ‘organize_infile_list’: 2026-03-06T10:14:33,945 global_basic.c:186:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-03-06T10:14:33,946 186 | while (isspace(*buf)) buf++; 2026-03-06T10:14:33,946 | ^~~~~~~ 2026-03-06T10:14:33,946 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2026-03-06T10:14:33,946 34 | #include 2026-03-06T10:14:33,946 +++ |+#include 2026-03-06T10:14:33,946 35 | 2026-03-06T10:14:33,946 global_basic.c:192:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:33,946 192 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T10:14:33,947 | ~~^ 2026-03-06T10:14:33,947 | | 2026-03-06T10:14:33,947 | long unsigned int 2026-03-06T10:14:33,947 | %u 2026-03-06T10:14:33,947 193 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T10:14:33,947 | ~~~~~~~~~~~ 2026-03-06T10:14:33,947 | | 2026-03-06T10:14:33,947 | size_t {aka unsigned int} 2026-03-06T10:14:33,948 global_basic.c:224:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T10:14:33,948 224 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T10:14:33,948 | ~~^ 2026-03-06T10:14:33,948 | | 2026-03-06T10:14:33,948 | long unsigned int 2026-03-06T10:14:33,949 | %u 2026-03-06T10:14:33,949 225 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T10:14:33,949 | ~~~~~~~~~~~ 2026-03-06T10:14:33,949 | | 2026-03-06T10:14:33,949 | size_t {aka unsigned int} 2026-03-06T10:14:33,973 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2026-03-06T10:14:34,132 ERROR: python setup.py bdist_wheel exited with 1 2026-03-06T10:14:34,144 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2026-03-06T10:14:34,144 exec(compile('"'"''"'"''"'"' 2026-03-06T10:14:34,144 # This is -- a caller that pip uses to run setup.py 2026-03-06T10:14:34,144 # 2026-03-06T10:14:34,144 # - It imports setuptools before invoking setup.py, to enable projects that directly 2026-03-06T10:14:34,144 # import from `distutils.core` to work with newer packaging standards. 2026-03-06T10:14:34,144 # - It provides a clear error message when setuptools is not installed. 2026-03-06T10:14:34,144 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2026-03-06T10:14:34,144 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2026-03-06T10:14:34,144 # manifest_maker: standard file '"'"'-c'"'"' not found". 2026-03-06T10:14:34,144 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2026-03-06T10:14:34,144 import os, sys, tokenize, traceback 2026-03-06T10:14:34,144 2026-03-06T10:14:34,144 try: 2026-03-06T10:14:34,144 import setuptools 2026-03-06T10:14:34,144 except ImportError: 2026-03-06T10:14:34,144 print( 2026-03-06T10:14:34,144 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2026-03-06T10:14:34,144 "the build environment with exception:", 2026-03-06T10:14:34,144 file=sys.stderr, 2026-03-06T10:14:34,144 ) 2026-03-06T10:14:34,144 traceback.print_exc() 2026-03-06T10:14:34,144 sys.exit(1) 2026-03-06T10:14:34,144 2026-03-06T10:14:34,144 __file__ = %r 2026-03-06T10:14:34,144 sys.argv[0] = __file__ 2026-03-06T10:14:34,144 2026-03-06T10:14:34,144 if os.path.exists(__file__): 2026-03-06T10:14:34,144 filename = __file__ 2026-03-06T10:14:34,144 with tokenize.open(__file__) as f: 2026-03-06T10:14:34,144 setup_py_code = f.read() 2026-03-06T10:14:34,144 else: 2026-03-06T10:14:34,144 filename = "" 2026-03-06T10:14:34,144 setup_py_code = "from setuptools import setup; setup()" 2026-03-06T10:14:34,144 2026-03-06T10:14:34,144 exec(compile(setup_py_code, filename, "exec")) 2026-03-06T10:14:34,144 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-io7e8_be/kssdutils_efe8d559f06b46358d3fc124460537b9/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-0jia__w2[/] 2026-03-06T10:14:34,144 [bold magenta]cwd[/]: /tmp/pip-wheel-io7e8_be/kssdutils_efe8d559f06b46358d3fc124460537b9/ 2026-03-06T10:14:34,144 Building wheel for kssdutils (setup.py): finished with status 'error' 2026-03-06T10:14:34,145 ERROR: Failed building wheel for kssdutils 2026-03-06T10:14:34,146 Running setup.py clean for kssdutils 2026-03-06T10:14:34,147 Running command python setup.py clean 2026-03-06T10:14:35,307 running clean 2026-03-06T10:14:35,457 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2026-03-06T10:14:35,458 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2026-03-06T10:14:35,458 'build/bdist.linux-armv7l' does not exist -- can't clean it 2026-03-06T10:14:35,458 'build/scripts-3.13' does not exist -- can't clean it 2026-03-06T10:14:35,458 removing 'build' 2026-03-06T10:14:35,570 Failed to build kssdutils 2026-03-06T10:14:35,571 ERROR: Failed to build one or more wheels 2026-03-06T10:14:35,571 Exception information: 2026-03-06T10:14:35,571 Traceback (most recent call last): 2026-03-06T10:14:35,571 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2026-03-06T10:14:35,571 status = _inner_run() 2026-03-06T10:14:35,571 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2026-03-06T10:14:35,571 return self.run(options, args) 2026-03-06T10:14:35,571 ~~~~~~~~^^^^^^^^^^^^^^^ 2026-03-06T10:14:35,571 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2026-03-06T10:14:35,571 return func(self, options, args) 2026-03-06T10:14:35,571 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2026-03-06T10:14:35,571 raise CommandError("Failed to build one or more wheels") 2026-03-06T10:14:35,571 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-03-06T10:14:35,576 Removed build tracker: '/tmp/pip-build-tracker-8r97m1qc'