2026-03-06T11:22:20,737 Created temporary directory: /tmp/pip-ephem-wheel-cache-vc9vme7y 2026-03-06T11:22:20,743 Created temporary directory: /tmp/pip-req-tracker-b4rcuwal 2026-03-06T11:22:20,743 Initialized build tracking at /tmp/pip-req-tracker-b4rcuwal 2026-03-06T11:22:20,744 Created build tracker: /tmp/pip-req-tracker-b4rcuwal 2026-03-06T11:22:20,744 Entered build tracker: /tmp/pip-req-tracker-b4rcuwal 2026-03-06T11:22:20,745 Created temporary directory: /tmp/pip-wheel-a3zuyphc 2026-03-06T11:22:20,793 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple, https://www.piwheels.org/simple 2026-03-06T11:22:20,798 2 location(s) to search for versions of kssdutils: 2026-03-06T11:22:20,798 * https://pypi.org/simple/kssdutils/ 2026-03-06T11:22:20,798 * https://www.piwheels.org/simple/kssdutils/ 2026-03-06T11:22:20,798 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2026-03-06T11:22:20,799 Getting page https://pypi.org/simple/kssdutils/ 2026-03-06T11:22:20,803 Found index url https://pypi.org/simple 2026-03-06T11:22:20,813 Starting new HTTPS connection (1): pypi.org:443 2026-03-06T11:22:20,986 https://pypi.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1710 2026-03-06T11:22:21,164 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz#sha256=8d679d5f963a767a4df5ded96f9aa2cd10524d23f7d418797ae62baaca759e1f (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2026-03-06T11:22:21,165 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz#sha256=cc08f86ac8152ac9a7f506f8d2f4808dca0754cebd06565f3de1cb7e639a310c (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2026-03-06T11:22:21,166 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz#sha256=384edc154817d0cbea825d78f0d58bee3fbe1811532e1f8ea77b8b7cb1e7fc84 (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2026-03-06T11:22:21,167 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz#sha256=412ff6a0cfd2bd03e01e83c8cb7cb663679b530682d69aad8733e696d8a2fae7 (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2026-03-06T11:22:21,167 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz#sha256=34a917037f0205223ec2e2b6a87da9381a3c5224a109a2ca92f010b72824f284 (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2026-03-06T11:22:21,168 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz#sha256=9e8e97befc6bcdf3bc904d558ac9e6a0bddf4458096aaaa5f0ef1ab344223ed5 (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2026-03-06T11:22:21,169 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz#sha256=f5862cfef7ea29d8c668475cdedf83af1b6c352d24827694a07af0fc82597032 (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2026-03-06T11:22:21,169 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz#sha256=07328ca56be9994670fea19e700d7c9b8f67c317bc8731c48939dd54e1cba32e (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2026-03-06T11:22:21,170 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz#sha256=f004a475c18f6a22a770cd9f6dd981521f2817c11b8f848aad411d59127df50d (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2026-03-06T11:22:21,171 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz#sha256=50dd2c513e94169e8fff9f28ff60e4bc059f409b49c3cff387d3ef49564f3c82 (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2026-03-06T11:22:21,172 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz#sha256=4f833f05e3fbed227f6cba1b2db89b12a0dbe7fc4634fa9c89c20446c3efab1b (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2026-03-06T11:22:21,172 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz#sha256=416f323a70d8f556b186cc63e8f0b2e4b0b2ce9d3d7f716e04bb2a3f7d08e86c (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2026-03-06T11:22:21,173 Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz#sha256=837148a9c069b8be1673edc80e4e380e956ed68df704095b6718e9ed927db051 (from https://pypi.org/simple/kssdutils/), version: 1.1.7 2026-03-06T11:22:21,174 Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz#sha256=54608ccc25c64db2983ef65844a7932bc6d8cc53afd1370ca8073409d488df2e (from https://pypi.org/simple/kssdutils/), version: 1.1.8 2026-03-06T11:22:21,175 Found link https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz#sha256=fdfc3cd69b375b4cfa96aed7837bc1214a2d1744234dadd729b9b06963ae0769 (from https://pypi.org/simple/kssdutils/), version: 1.1.9 2026-03-06T11:22:21,175 Found link https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz#sha256=d90d21776b50649c2175b53bc0cb02279ea0a75159e76ad86f6f17bd08368b3f (from https://pypi.org/simple/kssdutils/), version: 1.2.0 2026-03-06T11:22:21,176 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2026-03-06T11:22:21,177 Getting page https://www.piwheels.org/simple/kssdutils/ 2026-03-06T11:22:21,179 Found index url https://www.piwheels.org/simple 2026-03-06T11:22:21,183 Starting new HTTPS connection (1): www.piwheels.org:443 2026-03-06T11:22:21,298 https://www.piwheels.org:443 "GET /simple/kssdutils/ HTTP/1.1" 200 1777 2026-03-06T11:22:21,373 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv6l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,374 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv7l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,374 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,375 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,375 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,376 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,376 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,377 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,377 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,378 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,378 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,379 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,379 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,380 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,380 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,381 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,382 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,382 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,383 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,383 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,384 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,384 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,385 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,385 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,386 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv6l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,386 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp311-cp311-linux_armv7l.whl#sha256=aae5676066e2d651e6883867221d727acb24b9ccd831cc4209fb7b18df10cfbb (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,387 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv6l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,387 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,391 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,391 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,392 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,392 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,393 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,394 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,394 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,395 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,395 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,396 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,396 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,397 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,397 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,398 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,398 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,399 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,399 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,400 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,400 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,401 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,401 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,402 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T11:22:21,479 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2026-03-06T11:22:21,557 Collecting kssdutils==1.2.0 2026-03-06T11:22:21,560 Created temporary directory: /tmp/pip-unpack-d6fz8uj0 2026-03-06T11:22:21,568 Starting new HTTPS connection (1): files.pythonhosted.org:443 2026-03-06T11:22:21,643 https://files.pythonhosted.org:443 "GET /packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz HTTP/1.1" 200 45736 2026-03-06T11:22:21,646 Downloading kssdutils-1.2.0.tar.gz (45 kB) 2026-03-06T11:22:21,818 Added kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz#sha256=d90d21776b50649c2175b53bc0cb02279ea0a75159e76ad86f6f17bd08368b3f to build tracker '/tmp/pip-req-tracker-b4rcuwal' 2026-03-06T11:22:21,820 Running setup.py (path:/tmp/pip-wheel-a3zuyphc/kssdutils_7904dcb7d9ce4dd3a350f9fd6508ea0f/setup.py) egg_info for package kssdutils 2026-03-06T11:22:21,822 Created temporary directory: /tmp/pip-pip-egg-info-_fobt0yl 2026-03-06T11:22:21,822 Running command python setup.py egg_info 2026-03-06T11:22:23,941 running egg_info 2026-03-06T11:22:24,014 creating /tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info 2026-03-06T11:22:24,016 writing /tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/PKG-INFO 2026-03-06T11:22:24,023 writing dependency_links to /tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/dependency_links.txt 2026-03-06T11:22:24,028 writing top-level names to /tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/top_level.txt 2026-03-06T11:22:24,031 writing manifest file '/tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/SOURCES.txt' 2026-03-06T11:22:24,225 reading manifest file '/tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/SOURCES.txt' 2026-03-06T11:22:24,228 reading manifest template 'MANIFEST.in' 2026-03-06T11:22:24,249 writing manifest file '/tmp/pip-pip-egg-info-_fobt0yl/kssdutils.egg-info/SOURCES.txt' 2026-03-06T11:22:24,406 Source in /tmp/pip-wheel-a3zuyphc/kssdutils_7904dcb7d9ce4dd3a350f9fd6508ea0f has version 1.2.0, which satisfies requirement kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz#sha256=d90d21776b50649c2175b53bc0cb02279ea0a75159e76ad86f6f17bd08368b3f 2026-03-06T11:22:24,408 Removed kssdutils==1.2.0 from https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz#sha256=d90d21776b50649c2175b53bc0cb02279ea0a75159e76ad86f6f17bd08368b3f from build tracker '/tmp/pip-req-tracker-b4rcuwal' 2026-03-06T11:22:24,416 Created temporary directory: /tmp/pip-unpack-klvnmdfd 2026-03-06T11:22:24,417 Building wheels for collected packages: kssdutils 2026-03-06T11:22:24,425 Created temporary directory: /tmp/pip-wheel-1xljb2gf 2026-03-06T11:22:24,426 Building wheel for kssdutils (setup.py): started 2026-03-06T11:22:24,427 Destination directory: /tmp/pip-wheel-1xljb2gf 2026-03-06T11:22:24,484 Running command /usr/bin/python3 -u -c 'import sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-wheel-a3zuyphc/kssdutils_7904dcb7d9ce4dd3a350f9fd6508ea0f/setup.py'"'"'; __file__='"'"'/tmp/pip-wheel-a3zuyphc/kssdutils_7904dcb7d9ce4dd3a350f9fd6508ea0f/setup.py'"'"';f=getattr(tokenize, '"'"'open'"'"', open)(__file__);code=f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-1xljb2gf 2026-03-06T11:22:26,467 running bdist_wheel 2026-03-06T11:22:26,725 running build 2026-03-06T11:22:26,726 running build_py 2026-03-06T11:22:26,793 creating build/lib.linux-armv7l-cpython-39 2026-03-06T11:22:26,796 copying kssdutils.py -> build/lib.linux-armv7l-cpython-39 2026-03-06T11:22:26,800 running egg_info 2026-03-06T11:22:26,863 writing kssdutils.egg-info/PKG-INFO 2026-03-06T11:22:26,869 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2026-03-06T11:22:26,874 writing top-level names to kssdutils.egg-info/top_level.txt 2026-03-06T11:22:26,942 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T11:22:26,949 reading manifest template 'MANIFEST.in' 2026-03-06T11:22:26,970 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T11:22:26,974 running build_ext 2026-03-06T11:22:28,282 building 'kssdtool' extension 2026-03-06T11:22:28,286 creating build/temp.linux-armv7l-cpython-39 2026-03-06T11:22:28,290 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c co2mco.c -o build/temp.linux-armv7l-cpython-39/co2mco.o -fopenmp 2026-03-06T11:22:28,678 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-03-06T11:22:28,679 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T11:22:28,680 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-03-06T11:22:28,680 | ^ 2026-03-06T11:22:28,687 co2mco.c: In function ‘co2unitllmco’: 2026-03-06T11:22:28,688 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T11:22:28,689 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-03-06T11:22:28,689 | ^ 2026-03-06T11:22:30,164 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_composite.c -o build/temp.linux-armv7l-cpython-39/command_composite.o -fopenmp 2026-03-06T11:22:30,894 command_composite.c: In function ‘get_species_abundance’: 2026-03-06T11:22:30,895 command_composite.c:32:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T11:22:30,896 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-03-06T11:22:30,896 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,897 command_composite.c:34:34: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T11:22:30,897 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-03-06T11:22:30,898 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,898 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:30,899 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T11:22:30,899 | ^ 2026-03-06T11:22:30,900 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-03-06T11:22:30,900 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T11:22:30,901 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,901 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:30,902 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T11:22:30,902 | ^ 2026-03-06T11:22:30,903 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-03-06T11:22:30,903 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T11:22:30,904 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,904 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:30,905 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T11:22:30,905 | ^ 2026-03-06T11:22:30,906 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-03-06T11:22:30,906 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T11:22:30,907 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,907 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:30,908 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T11:22:30,908 | ^ 2026-03-06T11:22:30,908 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 259) into a destination of size 256 2026-03-06T11:22:30,909 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T11:22:30,909 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:30,910 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:30,910 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T11:22:30,911 | ^ 2026-03-06T11:22:30,911 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 261) into a destination of size 256 2026-03-06T11:22:30,912 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T11:22:30,912 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:31,470 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist.c -o build/temp.linux-armv7l-cpython-39/command_dist.o -fopenmp 2026-03-06T11:22:31,959 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T11:22:31,962 command_dist.c:664:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:31,962 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:31,963 | ~~^ 2026-03-06T11:22:31,963 | | 2026-03-06T11:22:31,964 | long unsigned int 2026-03-06T11:22:31,964 | %u 2026-03-06T11:22:31,964 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:31,965 | ~~~~~~~ 2026-03-06T11:22:31,965 | | 2026-03-06T11:22:31,966 | size_t {aka unsigned int} 2026-03-06T11:22:31,969 command_dist.c:664:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:31,969 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:31,970 | ~~^ 2026-03-06T11:22:31,970 | | 2026-03-06T11:22:31,971 | long unsigned int 2026-03-06T11:22:31,971 | %u 2026-03-06T11:22:31,972 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:31,972 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T11:22:31,972 | ~~~~~~~~~ 2026-03-06T11:22:31,973 | | 2026-03-06T11:22:31,973 | size_t {aka unsigned int} 2026-03-06T11:22:31,974 command_dist.c:664:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T11:22:31,974 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:31,975 | ~~^ 2026-03-06T11:22:31,975 | | 2026-03-06T11:22:31,976 | long unsigned int 2026-03-06T11:22:31,976 | %u 2026-03-06T11:22:31,977 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:31,977 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T11:22:31,978 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:31,978 | | 2026-03-06T11:22:31,979 | unsigned int 2026-03-06T11:22:31,980 command_dist.c:702:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T11:22:31,980 702 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-03-06T11:22:31,981 | ^ 2026-03-06T11:22:31,995 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T11:22:31,998 command_dist.c:850:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:31,998 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T11:22:31,999 | ~~^ ~~~~~~~ 2026-03-06T11:22:31,999 | | | 2026-03-06T11:22:31,999 | long unsigned int size_t {aka unsigned int} 2026-03-06T11:22:31,1000 | %u 2026-03-06T11:22:32,001 command_dist.c:850:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:32,002 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T11:22:32,002 | ~~^ 2026-03-06T11:22:32,003 | | 2026-03-06T11:22:32,003 | long unsigned int 2026-03-06T11:22:32,003 | %u 2026-03-06T11:22:32,004 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T11:22:32,004 | ~~~~~~~~~ 2026-03-06T11:22:32,005 | | 2026-03-06T11:22:32,005 | size_t {aka unsigned int} 2026-03-06T11:22:32,006 command_dist.c:850:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T11:22:32,006 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T11:22:32,006 | ~~^ 2026-03-06T11:22:32,007 | | 2026-03-06T11:22:32,007 | long unsigned int 2026-03-06T11:22:32,008 | %u 2026-03-06T11:22:32,008 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T11:22:32,009 852 | (size_t) b * unitsz_distf_mapped); 2026-03-06T11:22:32,009 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:32,010 | | 2026-03-06T11:22:32,010 | unsigned int 2026-03-06T11:22:32,010 command_dist.c:797:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-03-06T11:22:32,011 797 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-03-06T11:22:32,011 | ^~~~~~~ 2026-03-06T11:22:32,012 command_dist.c:796:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-03-06T11:22:32,012 796 | struct stat cbd_fcode_stat; 2026-03-06T11:22:32,013 | ^~~~~~~~~~~~~~ 2026-03-06T11:22:32,013 command_dist.c:795:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-03-06T11:22:32,014 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T11:22:32,014 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:32,014 command_dist.c:795:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-03-06T11:22:32,015 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T11:22:32,015 | ^~~~~~~~~~~~~~~~~ 2026-03-06T11:22:32,028 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T11:22:32,032 command_dist.c:1005:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:32,032 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:32,033 | ~~^ 2026-03-06T11:22:32,033 | | 2026-03-06T11:22:32,033 | long unsigned int 2026-03-06T11:22:32,034 | %u 2026-03-06T11:22:32,034 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:32,034 | ~~~~~~~ 2026-03-06T11:22:32,035 | | 2026-03-06T11:22:32,035 | size_t {aka unsigned int} 2026-03-06T11:22:32,036 command_dist.c:1005:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:32,037 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:32,037 | ~~^ 2026-03-06T11:22:32,037 | | 2026-03-06T11:22:32,038 | long unsigned int 2026-03-06T11:22:32,038 | %u 2026-03-06T11:22:32,038 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:32,039 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T11:22:32,039 | ~~~~~~~~~ 2026-03-06T11:22:32,040 | | 2026-03-06T11:22:32,040 | size_t {aka unsigned int} 2026-03-06T11:22:32,040 command_dist.c:1005:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T11:22:32,041 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T11:22:32,042 | ~~^ 2026-03-06T11:22:32,042 | | 2026-03-06T11:22:32,042 | long unsigned int 2026-03-06T11:22:32,043 | %u 2026-03-06T11:22:32,043 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T11:22:32,044 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T11:22:32,044 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:32,044 | | 2026-03-06T11:22:32,045 | unsigned int 2026-03-06T11:22:32,045 command_dist.c:1021:27: warning: comparison of integer expressions of different signedness: ‘__off_t’ {aka ‘long int’} and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,046 1021 | if (s.st_size > sizeof(gidobj_t) * MCOMM_SZ) mco_mem = (gidobj_t *) realloc(mco_mem, s.st_size); 2026-03-06T11:22:32,046 | ^ 2026-03-06T11:22:32,052 command_dist.c: In function ‘mco_co_dist_core’: 2026-03-06T11:22:32,053 command_dist.c:1103:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T11:22:32,054 1103 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-03-06T11:22:32,054 | ^ 2026-03-06T11:22:32,067 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-03-06T11:22:32,069 command_dist.c:1226:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,069 1226 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T11:22:32,070 | ^ 2026-03-06T11:22:32,073 command_dist.c:1232:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,073 1232 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T11:22:32,074 | ^ 2026-03-06T11:22:32,085 command_dist.c: In function ‘dist_print_nobin’: 2026-03-06T11:22:32,087 command_dist.c:1322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,088 1322 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-03-06T11:22:32,088 | ^ 2026-03-06T11:22:32,092 command_dist.c:1343:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,092 1343 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T11:22:32,093 | ^ 2026-03-06T11:22:32,096 command_dist.c:1367:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,096 1367 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T11:22:32,097 | ^ 2026-03-06T11:22:32,098 command_dist.c:1369:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T11:22:32,098 1369 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T11:22:32,099 | ^ 2026-03-06T11:22:32,694 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-03-06T11:22:32,695 command_dist.c:390:21: warning: ‘com_abund_fp’ may be used uninitialized in this function [-Wmaybe-uninitialized] 2026-03-06T11:22:32,695 390 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-03-06T11:22:32,696 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:32,696 command_dist.c:362:40: note: ‘com_abund_fp’ was declared here 2026-03-06T11:22:32,697 362 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-03-06T11:22:32,697 | ^~~~~~~~~~~~ 2026-03-06T11:22:34,450 command_dist.c: In function ‘get_dim_shuffle’: 2026-03-06T11:22:34,451 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-03-06T11:22:34,451 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T11:22:34,452 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:34,452 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-03-06T11:22:34,453 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T11:22:34,453 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,346 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T11:22:36,347 command_dist.c:583:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:36,348 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:36,348 | ^~ ~~~~~~~~~ 2026-03-06T11:22:36,349 command_dist.c:583:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T11:22:36,349 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:36,349 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,350 command_dist.c:612:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:36,350 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:36,351 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:36,351 command_dist.c:612:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T11:22:36,352 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:36,352 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,354 command_dist.c:668:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:36,354 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T11:22:36,355 | ^~~~~~~~~~~ 2026-03-06T11:22:36,355 command_dist.c:668:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T11:22:36,355 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T11:22:36,356 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,356 command_dist.c:669:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:36,357 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T11:22:36,357 | ^~~~~ 2026-03-06T11:22:36,357 command_dist.c:669:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T11:22:36,358 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T11:22:36,358 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,852 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T11:22:36,853 command_dist.c:750:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:36,854 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:36,854 | ^~ ~~~~~~~~~ 2026-03-06T11:22:36,855 command_dist.c:750:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T11:22:36,855 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:36,855 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,856 command_dist.c:777:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:36,857 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:36,857 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:36,858 command_dist.c:777:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T11:22:36,858 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:36,858 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,859 command_dist.c:810:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:36,860 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T11:22:36,860 | ^~~~~~~~~~~~~ 2026-03-06T11:22:36,861 command_dist.c:810:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T11:22:36,861 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T11:22:36,862 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,863 command_dist.c:836:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:36,864 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T11:22:36,864 | ^ 2026-03-06T11:22:36,865 command_dist.c:836:33: note: directive argument in the range [0, 536870912] 2026-03-06T11:22:36,865 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T11:22:36,865 | ^~~~~~~~~~ 2026-03-06T11:22:36,866 command_dist.c:836:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T11:22:36,866 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T11:22:36,867 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:36,868 command_dist.c:838:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:36,868 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T11:22:36,868 | ^ 2026-03-06T11:22:36,869 command_dist.c:838:28: note: directive argument in the range [0, 536870912] 2026-03-06T11:22:36,869 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T11:22:36,870 | ^~~~~~~~~~ 2026-03-06T11:22:36,870 command_dist.c:838:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T11:22:36,871 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T11:22:36,871 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:37,434 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T11:22:37,436 command_dist.c:914:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:37,436 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:37,437 | ^~ ~~~~~~~~~ 2026-03-06T11:22:37,438 command_dist.c:914:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T11:22:37,438 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T11:22:37,438 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:37,440 command_dist.c:943:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:37,440 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:37,441 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:37,441 command_dist.c:943:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T11:22:37,442 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T11:22:37,442 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:37,443 command_dist.c:977:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:37,444 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T11:22:37,444 | ^~~~~~~~~~~~~ 2026-03-06T11:22:37,445 command_dist.c:977:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T11:22:37,446 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T11:22:37,446 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:37,448 command_dist.c:1009:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:37,449 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T11:22:37,449 | ^~~~~~~~~~~ 2026-03-06T11:22:37,450 command_dist.c:1009:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T11:22:37,450 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T11:22:37,451 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:37,452 command_dist.c:1010:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T11:22:37,452 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T11:22:37,452 | ^~~~~ 2026-03-06T11:22:37,453 command_dist.c:1010:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T11:22:37,454 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T11:22:37,454 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:38,041 command_dist.c: In function ‘combine_queries’: 2026-03-06T11:22:38,044 command_dist.c:1479:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:38,044 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T11:22:38,044 | ^ 2026-03-06T11:22:38,046 command_dist.c:1479:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:38,046 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T11:22:38,047 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:38,049 command_dist.c:1486:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:38,049 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T11:22:38,049 | ^ 2026-03-06T11:22:38,051 command_dist.c:1486:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:38,052 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T11:22:38,052 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:38,056 command_dist.c:1590:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:38,057 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T11:22:38,057 | ^~ ~~~~~~~~ 2026-03-06T11:22:38,059 command_dist.c:1590:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T11:22:38,060 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T11:22:38,060 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:39,184 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o -fopenmp 2026-03-06T11:22:39,592 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_set.c -o build/temp.linux-armv7l-cpython-39/command_set.o -fopenmp 2026-03-06T11:22:39,952 command_set.c: In function ‘sketch_operate’: 2026-03-06T11:22:39,953 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T11:22:39,953 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-03-06T11:22:39,954 | ^ 2026-03-06T11:22:39,978 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T11:22:39,979 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T11:22:39,980 457 | free(co_dstat_fpath); 2026-03-06T11:22:39,980 | ^~~~~~~~~~~~~~ 2026-03-06T11:22:39,982 In file included from kssdheaders/global_basic.h:159, 2026-03-06T11:22:39,983 from command_set.c:15: 2026-03-06T11:22:39,983 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T11:22:39,983 565 | extern void free (void *__ptr) __THROW; 2026-03-06T11:22:39,984 | ~~~~~~^~~~~ 2026-03-06T11:22:39,995 command_set.c: In function ‘grouping_genomes’: 2026-03-06T11:22:39,996 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T11:22:39,997 562 | free(co_dstat_fpath); 2026-03-06T11:22:39,997 | ^~~~~~~~~~~~~~ 2026-03-06T11:22:39,998 In file included from kssdheaders/global_basic.h:159, 2026-03-06T11:22:39,998 from command_set.c:15: 2026-03-06T11:22:39,999 /usr/include/stdlib.h:565:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T11:22:39,999 565 | extern void free (void *__ptr) __THROW; 2026-03-06T11:22:39,1000 | ~~~~~~^~~~~ 2026-03-06T11:22:40,277 command_set.c: In function ‘sketch_union’: 2026-03-06T11:22:40,278 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:40,278 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,279 | ^ 2026-03-06T11:22:40,279 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:40,280 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,280 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,281 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,281 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T11:22:40,282 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,282 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:40,283 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T11:22:40,283 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,284 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,284 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T11:22:40,285 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:40,285 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T11:22:40,286 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T11:22:40,286 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,564 command_set.c: In function ‘sketch_operate’: 2026-03-06T11:22:40,564 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,565 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T11:22:40,565 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:40,566 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T11:22:40,566 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T11:22:40,567 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,567 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,568 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T11:22:40,568 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,568 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T11:22:40,569 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T11:22:40,569 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,570 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,570 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T11:22:40,571 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,571 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:40,572 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T11:22:40,572 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,573 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,573 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T11:22:40,574 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,574 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:40,575 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T11:22:40,575 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,575 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,576 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T11:22:40,576 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,577 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:40,577 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T11:22:40,578 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,578 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,579 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T11:22:40,579 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,580 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:40,580 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T11:22:40,580 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,581 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:40,581 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,582 | ^ 2026-03-06T11:22:40,582 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:40,583 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,583 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,934 command_set.c: In function ‘uniq_sketch_union’: 2026-03-06T11:22:40,935 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:40,935 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,936 | ^ 2026-03-06T11:22:40,936 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:40,937 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:40,937 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,938 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,938 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T11:22:40,939 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:40,939 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:40,939 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T11:22:40,940 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,940 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:40,941 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T11:22:40,941 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T11:22:40,942 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T11:22:40,942 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T11:22:40,943 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,241 command_set.c: In function ‘combin_pans’: 2026-03-06T11:22:41,242 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,243 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:41,243 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:41,243 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-03-06T11:22:41,244 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:41,244 | ^~~~~~~~~~ 2026-03-06T11:22:41,245 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-03-06T11:22:41,245 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:41,246 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,246 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,246 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:41,247 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:41,247 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-03-06T11:22:41,248 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:41,248 | ^~~~~~~~~~ 2026-03-06T11:22:41,249 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-03-06T11:22:41,249 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:41,249 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,250 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:41,250 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:41,251 | ^ 2026-03-06T11:22:41,251 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:41,252 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:41,252 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,703 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T11:22:41,704 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,704 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T11:22:41,704 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:41,705 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:41,705 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T11:22:41,706 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,706 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,707 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T11:22:41,707 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:41,708 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:41,708 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T11:22:41,708 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,709 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,709 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:41,710 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:41,710 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:41,711 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:41,711 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,712 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:41,713 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:41,713 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:41,714 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:41,714 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:41,714 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:41,715 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:41,715 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:41,716 | ^ 2026-03-06T11:22:41,716 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:41,717 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:41,717 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,206 command_set.c: In function ‘grouping_genomes’: 2026-03-06T11:22:42,208 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:42,208 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T11:22:42,209 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:42,209 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:42,209 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T11:22:42,210 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,210 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:42,211 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T11:22:42,211 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:42,212 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:42,212 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T11:22:42,213 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,215 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:42,216 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:42,216 | ^~ ~~~~~~~~~~~ 2026-03-06T11:22:42,217 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T11:22:42,217 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T11:22:42,218 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,219 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T11:22:42,219 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:42,220 | ^~ ~~~~~~~~~~ 2026-03-06T11:22:42,220 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T11:22:42,221 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T11:22:42,221 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,222 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T11:22:42,222 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:42,222 | ^ 2026-03-06T11:22:42,223 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T11:22:42,223 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T11:22:42,224 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:42,882 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-39/command_shuffle.o -fopenmp 2026-03-06T11:22:43,561 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c global_basic.c -o build/temp.linux-armv7l-cpython-39/global_basic.o -fopenmp 2026-03-06T11:22:43,933 global_basic.c: In function ‘organize_infile_list’: 2026-03-06T11:22:43,934 global_basic.c:186:20: warning: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-03-06T11:22:43,934 186 | while (isspace(*buf)) buf++; 2026-03-06T11:22:43,935 | ^~~~~~~ 2026-03-06T11:22:43,935 global_basic.c:192:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:43,936 192 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T11:22:43,936 | ~~^ 2026-03-06T11:22:43,937 | | 2026-03-06T11:22:43,937 | long unsigned int 2026-03-06T11:22:43,938 | %u 2026-03-06T11:22:43,938 193 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T11:22:43,939 | ~~~~~~~~~~~ 2026-03-06T11:22:43,939 | | 2026-03-06T11:22:43,939 | size_t {aka unsigned int} 2026-03-06T11:22:43,940 global_basic.c:224:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T11:22:43,941 224 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T11:22:43,941 | ~~^ 2026-03-06T11:22:43,942 | | 2026-03-06T11:22:43,942 | long unsigned int 2026-03-06T11:22:43,943 | %u 2026-03-06T11:22:43,943 225 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T11:22:43,944 | ~~~~~~~~~~~ 2026-03-06T11:22:43,944 | | 2026-03-06T11:22:43,944 | size_t {aka unsigned int} 2026-03-06T11:22:45,569 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c iseq2comem.c -o build/temp.linux-armv7l-cpython-39/iseq2comem.o -fopenmp 2026-03-06T11:22:45,939 iseq2comem.c: In function ‘reads2mco’: 2026-03-06T11:22:45,940 iseq2comem.c:156:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,940 156 | if (base > TL) { 2026-03-06T11:22:45,941 | ^ 2026-03-06T11:22:45,941 iseq2comem.c:160:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,942 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,942 | ^~ 2026-03-06T11:22:45,943 iseq2comem.c:160:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,943 160 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,944 | ^ 2026-03-06T11:22:45,944 iseq2comem.c: In function ‘fasta2co’: 2026-03-06T11:22:45,945 iseq2comem.c:213:69: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,945 213 | if ((infp = popen(fas_fname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n"); 2026-03-06T11:22:45,946 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:45,946 iseq2comem.c:219:69: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,947 219 | if ((infp = popen(fas_fname, "r")) == NULL) fprintf(stderr, "fasta2co():%s", fas_fname, "\n"); 2026-03-06T11:22:45,947 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:45,948 iseq2comem.c:261:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,948 261 | if (base > TL) { 2026-03-06T11:22:45,949 | ^ 2026-03-06T11:22:45,949 iseq2comem.c:265:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,950 265 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,950 | ^~ 2026-03-06T11:22:45,951 iseq2comem.c:265:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,951 265 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,952 | ^ 2026-03-06T11:22:45,952 iseq2comem.c: In function ‘fastq2co’: 2026-03-06T11:22:45,953 iseq2comem.c:295:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘long long unsigned int’ [-Wsign-compare] 2026-03-06T11:22:45,953 295 | if (M >= CT_MAX) fprintf(stderr, "fastq2co(): Occurence num should smaller than %d", (int) CT_MAX); 2026-03-06T11:22:45,954 | ^~ 2026-03-06T11:22:45,954 iseq2comem.c:307:68: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,955 307 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n"); 2026-03-06T11:22:45,955 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:45,956 iseq2comem.c:313:68: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,956 313 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2co():%s", fq_fname, "\n"); 2026-03-06T11:22:45,956 | ^~~~~~~~~~~~~~~ 2026-03-06T11:22:45,957 iseq2comem.c:352:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,957 352 | if (base > TL) { 2026-03-06T11:22:45,958 | ^ 2026-03-06T11:22:45,958 iseq2comem.c:356:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,959 356 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,959 | ^~ 2026-03-06T11:22:45,960 iseq2comem.c:356:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,960 356 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,961 | ^ 2026-03-06T11:22:45,961 iseq2comem.c:375:44: warning: comparison of integer expressions of different signedness: ‘long long unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,962 375 | if (!((co[n] & CT_MAX) < M)) co[n] |= CT_MAX; 2026-03-06T11:22:45,962 | ^ 2026-03-06T11:22:45,963 iseq2comem.c: In function ‘fastq2koc’: 2026-03-06T11:22:45,963 iseq2comem.c:403:68: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,964 403 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n"); 2026-03-06T11:22:45,964 | ^~~~~~~~~~~~~~~~ 2026-03-06T11:22:45,964 iseq2comem.c:409:68: warning: too many arguments for format [-Wformat-extra-args] 2026-03-06T11:22:45,965 409 | if ((infp = popen(fq_fname, "r")) == NULL) fprintf(stderr, "fastq2koc():%s", fq_fname, "\n"); 2026-03-06T11:22:45,965 | ^~~~~~~~~~~~~~~~ 2026-03-06T11:22:45,966 iseq2comem.c:448:18: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,966 448 | if (base > TL) { 2026-03-06T11:22:45,967 | ^ 2026-03-06T11:22:45,967 iseq2comem.c:452:26: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,968 452 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,968 | ^~ 2026-03-06T11:22:45,969 iseq2comem.c:452:50: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,969 452 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,970 | ^ 2026-03-06T11:22:45,978 iseq2comem.c: In function ‘mt_shortreads2koc’: 2026-03-06T11:22:45,978 iseq2comem.c:628:34: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,979 628 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,979 | ^~ 2026-03-06T11:22:45,980 iseq2comem.c:628:58: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 2026-03-06T11:22:45,980 628 | if ((pfilter >= dim_end) || (pfilter < dim_start)) continue; 2026-03-06T11:22:45,981 | ^ 2026-03-06T11:22:48,877 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mman.c -o build/temp.linux-armv7l-cpython-39/mman.o -fopenmp 2026-03-06T11:22:49,033 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c mytime.c -o build/temp.linux-armv7l-cpython-39/mytime.o -fopenmp 2026-03-06T11:22:49,330 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-eDAWto/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ikssdheaders -I/usr/include/python3.9 -c pykssd.c -o build/temp.linux-armv7l-cpython-39/pykssd.o -fopenmp 2026-03-06T11:22:50,136 pykssd.c: In function ‘py_dist_dispatch’: 2026-03-06T11:22:50,137 pykssd.c:436:13: warning: unused variable ‘state1’ [-Wunused-variable] 2026-03-06T11:22:50,137 436 | int state1 = dist_dispatch(&dist_opt_val1); 2026-03-06T11:22:50,138 | ^~~~~~ 2026-03-06T11:22:50,139 pykssd.c:501:13: warning: unused variable ‘state2’ [-Wunused-variable] 2026-03-06T11:22:50,140 501 | int state2 = dist_dispatch(&dist_opt_val2); 2026-03-06T11:22:50,140 | ^~~~~~ 2026-03-06T11:22:50,143 pykssd.c:635:13: warning: unused variable ‘state4’ [-Wunused-variable] 2026-03-06T11:22:50,144 635 | int state4 = dist_dispatch(&dist_opt_val4); 2026-03-06T11:22:50,144 | ^~~~~~ 2026-03-06T11:22:50,509 pykssd.c: In function ‘rename_file’: 2026-03-06T11:22:50,509 pykssd.c:64:5: warning: ‘strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=] 2026-03-06T11:22:50,510 64 | strncpy(newfile, p1, len - suffix_len); 2026-03-06T11:22:50,511 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T11:22:50,511 pykssd.c:50:15: note: length computed here 2026-03-06T11:22:50,512 50 | int len = strlen(p1); 2026-03-06T11:22:50,512 | ^~~~~~~~~~ 2026-03-06T11:22:51,756 arm-linux-gnueabihf-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 build/temp.linux-armv7l-cpython-39/co2mco.o build/temp.linux-armv7l-cpython-39/command_composite.o build/temp.linux-armv7l-cpython-39/command_dist.o build/temp.linux-armv7l-cpython-39/command_dist_wrapper.o build/temp.linux-armv7l-cpython-39/command_set.o build/temp.linux-armv7l-cpython-39/command_shuffle.o build/temp.linux-armv7l-cpython-39/global_basic.o build/temp.linux-armv7l-cpython-39/iseq2comem.o build/temp.linux-armv7l-cpython-39/mman.o build/temp.linux-armv7l-cpython-39/mytime.o build/temp.linux-armv7l-cpython-39/pykssd.o -L/usr/lib -lz -o build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -fopenmp 2026-03-06T11:22:52,183 /usr/local/lib/python3.9/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-06T11:22:52,184 !! 2026-03-06T11:22:52,185 ******************************************************************************** 2026-03-06T11:22:52,186 Please avoid running ``setup.py`` directly. 2026-03-06T11:22:52,186 Instead, use pypa/build, pypa/installer or other 2026-03-06T11:22:52,186 standards-based tools. 2026-03-06T11:22:52,187 This deprecation is overdue, please update your project and remove deprecated 2026-03-06T11:22:52,188 calls to avoid build errors in the future. 2026-03-06T11:22:52,189 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-06T11:22:52,189 ******************************************************************************** 2026-03-06T11:22:52,190 !! 2026-03-06T11:22:52,191 self.initialize_options() 2026-03-06T11:22:52,246 installing to build/bdist.linux-armv7l/wheel 2026-03-06T11:22:52,247 running install 2026-03-06T11:22:52,298 running install_lib 2026-03-06T11:22:52,362 creating build/bdist.linux-armv7l/wheel 2026-03-06T11:22:52,365 copying build/lib.linux-armv7l-cpython-39/kssdtool.cpython-39-arm-linux-gnueabihf.so -> build/bdist.linux-armv7l/wheel/. 2026-03-06T11:22:52,390 copying build/lib.linux-armv7l-cpython-39/kssdutils.py -> build/bdist.linux-armv7l/wheel/. 2026-03-06T11:22:52,394 running install_egg_info 2026-03-06T11:22:52,472 Copying kssdutils.egg-info to build/bdist.linux-armv7l/wheel/./kssdutils-1.2.0-py3.9.egg-info 2026-03-06T11:22:52,494 running install_scripts 2026-03-06T11:22:52,605 creating build/bdist.linux-armv7l/wheel/kssdutils-1.2.0.dist-info/WHEEL 2026-03-06T11:22:52,611 creating '/tmp/pip-wheel-1xljb2gf/kssdutils-1.2.0-cp39-cp39-linux_armv7l.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-06T11:22:52,841 adding 'kssdtool.cpython-39-arm-linux-gnueabihf.so' 2026-03-06T11:22:52,853 adding 'kssdutils.py' 2026-03-06T11:22:52,858 adding 'kssdutils-1.2.0.dist-info/METADATA' 2026-03-06T11:22:52,860 adding 'kssdutils-1.2.0.dist-info/WHEEL' 2026-03-06T11:22:52,862 adding 'kssdutils-1.2.0.dist-info/dependency_links.txt' 2026-03-06T11:22:52,865 adding 'kssdutils-1.2.0.dist-info/top_level.txt' 2026-03-06T11:22:52,866 adding 'kssdutils-1.2.0.dist-info/RECORD' 2026-03-06T11:22:52,876 removing build/bdist.linux-armv7l/wheel 2026-03-06T11:22:53,127 Building wheel for kssdutils (setup.py): finished with status 'done' 2026-03-06T11:22:53,136 Created wheel for kssdutils: filename=kssdutils-1.2.0-cp39-cp39-linux_armv7l.whl size=182504 sha256=0674b995d5f29ef2b9143b006e7cc27c8e11a011739c5415abbec13423c68cd1 2026-03-06T11:22:53,137 Stored in directory: /tmp/pip-ephem-wheel-cache-vc9vme7y/wheels/a1/57/40/dda6f89b9584b93b41578d60ff945b53cde3638e7d63099f5b 2026-03-06T11:22:53,155 Successfully built kssdutils 2026-03-06T11:22:53,183 Removed build tracker: '/tmp/pip-req-tracker-b4rcuwal'