2026-03-06T17:00:32,175 Created temporary directory: /tmp/pip-build-tracker-vwu5lt06 2026-03-06T17:00:32,175 Initialized build tracking at /tmp/pip-build-tracker-vwu5lt06 2026-03-06T17:00:32,175 Created build tracker: /tmp/pip-build-tracker-vwu5lt06 2026-03-06T17:00:32,176 Entered build tracker: /tmp/pip-build-tracker-vwu5lt06 2026-03-06T17:00:32,176 Created temporary directory: /tmp/pip-wheel-hulk6_um 2026-03-06T17:00:32,179 Created temporary directory: /tmp/pip-ephem-wheel-cache-gmy_azn0 2026-03-06T17:00:32,234 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-06T17:00:32,236 2 location(s) to search for versions of kssdutils: 2026-03-06T17:00:32,236 * https://pypi.org/simple/kssdutils/ 2026-03-06T17:00:32,236 * https://www.piwheels.org/simple/kssdutils/ 2026-03-06T17:00:32,237 Fetching project page and analyzing links: https://pypi.org/simple/kssdutils/ 2026-03-06T17:00:32,237 Getting page https://pypi.org/simple/kssdutils/ 2026-03-06T17:00:32,238 Found index url https://pypi.org/simple/ 2026-03-06T17:00:32,313 Fetched page https://pypi.org/simple/kssdutils/ as application/vnd.pypi.simple.v1+json 2026-03-06T17:00:32,315 Found link https://files.pythonhosted.org/packages/61/ef/1bdb91b53dbe31ea0be28ab2c2292994b6228b357a8d54b69ac642f81f01/kssdutils-1.0.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.0 2026-03-06T17:00:32,316 Found link https://files.pythonhosted.org/packages/6f/f6/cc67acf92ea770b5f6a8bd97d375432881861935beafe9ebd4031a73482c/kssdutils-1.0.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.1 2026-03-06T17:00:32,316 Found link https://files.pythonhosted.org/packages/57/17/dd41697db7220423d0ab77f9f035b9a347edc1edefc2c35d9890178cbe17/kssdutils-1.0.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.2 2026-03-06T17:00:32,316 Found link https://files.pythonhosted.org/packages/3e/92/7a94130bd54e0e3dd20c1a609aef2f24875b86e9d61752f63b500d3f86f5/kssdutils-1.0.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.3 2026-03-06T17:00:32,317 Found link https://files.pythonhosted.org/packages/42/01/15ec102f7ac6b4fc3158ba60de64598a005cefffc773fa69eecbd3c9b016/kssdutils-1.0.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.5 2026-03-06T17:00:32,317 Found link https://files.pythonhosted.org/packages/aa/08/08fa5f76478fd3dbe9534ad21332b5dc03826197935c2b696e189af49f0b/kssdutils-1.0.6.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.6 2026-03-06T17:00:32,317 Found link https://files.pythonhosted.org/packages/78/17/7776b7c3b149fedfb0fba98bce07fdf08cb53773dafa174f7fda9ce4df55/kssdutils-1.0.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.0.7 2026-03-06T17:00:32,317 Found link https://files.pythonhosted.org/packages/a7/50/138f2b5f98dcd2327609362e505af19857468da67dba88eaf6c8d8fdb83a/kssdutils-1.1.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.0 2026-03-06T17:00:32,318 Found link https://files.pythonhosted.org/packages/be/be/659d775f3dd37e727d782fa46b7b665e69a59c78312fa5fc1bad8640f980/kssdutils-1.1.2.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.2 2026-03-06T17:00:32,318 Found link https://files.pythonhosted.org/packages/d0/e9/badb25888a9e48aa82e2389e848aff81ae6affd17af96622974dc314ae52/kssdutils-1.1.3.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.3 2026-03-06T17:00:32,318 Found link https://files.pythonhosted.org/packages/b3/43/18e812a7529c356cfa20627f201f1956e4b8203e1db782861ad6e5900bf8/kssdutils-1.1.4.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.4 2026-03-06T17:00:32,318 Found link https://files.pythonhosted.org/packages/98/8c/0eb4850f10a9da51072d7be474ecffd0f808423f21838f543dc88db7ddd2/kssdutils-1.1.5.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.5 2026-03-06T17:00:32,319 Found link https://files.pythonhosted.org/packages/c3/44/c52bfc36ee73ebbc978099403a176e76446f23b1691c9df71bd38bbe6430/kssdutils-1.1.7.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.7 2026-03-06T17:00:32,319 Found link https://files.pythonhosted.org/packages/a8/d7/8426d81d46965dcb35320a45f5b457453be5160b18551902b31860952f69/kssdutils-1.1.8.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.8 2026-03-06T17:00:32,319 Found link https://files.pythonhosted.org/packages/4e/b4/5e5af5267d953d53d92b1f74c11fac8874cc94a7e1f5a0e699ba3ecc57f2/kssdutils-1.1.9.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.1.9 2026-03-06T17:00:32,319 Found link https://files.pythonhosted.org/packages/bd/e0/d7aec62c770afea4b416e12c6e0afcb31d4d07c6a9320c903e87821c1512/kssdutils-1.2.0.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.2.0 2026-03-06T17:00:32,320 Found link https://files.pythonhosted.org/packages/bc/23/9cb4f9e681bcb9f0b76a4ba9ba04ee7196be39eb751f096b15c73846da91/kssdutils-1.2.1.tar.gz (from https://pypi.org/simple/kssdutils/), version: 1.2.1 2026-03-06T17:00:32,320 Fetching project page and analyzing links: https://www.piwheels.org/simple/kssdutils/ 2026-03-06T17:00:32,320 Getting page https://www.piwheels.org/simple/kssdutils/ 2026-03-06T17:00:32,321 Found index url https://www.piwheels.org/simple/ 2026-03-06T17:00:32,422 Fetched page https://www.piwheels.org/simple/kssdutils/ as text/html 2026-03-06T17:00:32,437 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.1-cp311-cp311-linux_armv6l.whl#sha256=9d55e37a6df79cb1066656b0f52692392178b3f97bda504b42bd688c9f56e70f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,437 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.1-cp311-cp311-linux_armv7l.whl#sha256=9d55e37a6df79cb1066656b0f52692392178b3f97bda504b42bd688c9f56e70f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,437 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv6l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,438 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp311-cp311-linux_armv7l.whl#sha256=f4620cb11cd680f7dcbbd7744c03dee2183ec0a4c4c6abd29bc599c70af26d1d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,438 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp39-cp39-linux_armv6l.whl#sha256=0674b995d5f29ef2b9143b006e7cc27c8e11a011739c5415abbec13423c68cd1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,438 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.2.0-cp39-cp39-linux_armv7l.whl#sha256=0674b995d5f29ef2b9143b006e7cc27c8e11a011739c5415abbec13423c68cd1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,438 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv6l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,438 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.9-cp311-cp311-linux_armv7l.whl#sha256=4170c6f7b1539a2959a5c83dab6344741df3727fe6cd0c2f5f067e5bc498d13f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv6l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp311-cp311-linux_armv7l.whl#sha256=1ca8d1a14ea2253a85ab097f8a97a065c394460f12019e954e44a8de87f5392c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv6l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://www.piwheels.org/simple/kssdutils/kssdutils-1.1.8-cp39-cp39-linux_armv7l.whl#sha256=a94391f6b776dcdd0dd75533da283828a5fc4b0a4fcb195c96189d4da6984850 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv6l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,439 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp311-cp311-linux_armv7l.whl#sha256=5beb32a7772765a880c50ab75f1b8a504d6c960523a444ea7829d7fef3671c4c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv6l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.7-cp39-cp39-linux_armv7l.whl#sha256=bea859a11c139a17abe9233844b7d680aab56d553fc883a214cb8aea8147aa7c (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv6l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp311-cp311-linux_armv7l.whl#sha256=954571c31f45999b6eeb2cc007104d4a864f065c6aac3ff584a2e5d01fe7d22f (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv6l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,440 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.5-cp39-cp39-linux_armv7l.whl#sha256=109623235074cfc937bce9a38d6d20bcf42003659045c0bda63bb091408c003d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv6l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp311-cp311-linux_armv7l.whl#sha256=887ef39ec2c7cd34700ce800859855937714cdcebb02dcbd1c99aa7266df6c1b (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv6l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.4-cp39-cp39-linux_armv7l.whl#sha256=c752a2d90aa02aedfa92d27348e83c6e3cecace8633c4e91679da40ada370a66 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv6l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,441 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp311-cp311-linux_armv7l.whl#sha256=5584c66cba9b3b3dc5863d4eadba8674b765a709b4c7abc210ce12f9e49d68a3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,442 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv6l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,442 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.3-cp39-cp39-linux_armv7l.whl#sha256=0bc9a271bdbc41d568d8a3834e847d4a29d5af0a18cc86d8743ca8a193272a98 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,442 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.2-cp39-cp39-linux_armv7l.whl#sha256=e7719ceb9b4ce3c5cfbfa12e1b4e8d314e117ca845fd6bedcafe8abadb5ca1f3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,443 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv6l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,443 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.1.0-cp311-cp311-linux_armv7l.whl#sha256=0c8e77f57ec908176d8961c597a98abc9259dee9141399da1712be9b1d560bc8 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,443 Skipping link: No binaries permitted for kssdutils: 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https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp311-cp311-linux_armv7l.whl#sha256=c45bd36d62b251ee659d4aeaaca8255ff10d29d84edaf2551a0fed903f1a5fe3 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,443 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv6l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.7-cp39-cp39-linux_armv7l.whl#sha256=fcc578373bf2b252b22da188e4ca939bebcc53786b1f302a901a5cf261df624e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv6l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp311-cp311-linux_armv7l.whl#sha256=24cea74c37c72ec3f541e6eca026f6a906455d0e0160dc7d0f4526ab89a58125 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv6l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.6-cp39-cp39-linux_armv7l.whl#sha256=bfe64af80d2aab63dccf6fb0418e3b806f4ee1b2fcff0eab77094040d2b6dca5 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,444 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv6l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp311-cp311-linux_armv7l.whl#sha256=29ec8af3f080743643fee31ce978f3d65a6d90b950248e2ed6827316567aaa62 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv6l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.5-cp39-cp39-linux_armv7l.whl#sha256=fb21de5c7d85619ac9cc1fafe3280f0130178032b169f1cf7ceac0cb6326d42e (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv6l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp311-cp311-linux_armv7l.whl#sha256=85c10f6c3223fb99e39dfddbef722fd2913bd5c63f089283ce23dae20c6a4a4d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,445 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv6l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.2-cp39-cp39-linux_armv7l.whl#sha256=809195defd92c452797e9a87d99cfa8217c9ca4800c4a57d3e669846368160b1 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv6l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp311-cp311-linux_armv7l.whl#sha256=88788d94e7e118cfdf4e2cb04c558d2032ffa4f9352b663efd1a76f098c9f31d (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv6l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.1-cp39-cp39-linux_armv7l.whl#sha256=29a695a62aae6fa18fcad3ae6bfc6bbe19f545f66740fde177ddbf23efa45d15 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv6l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,446 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp311-cp311-linux_armv7l.whl#sha256=e93f43f34a8ab412f6a0c97bc930a5c9c72997258d109e3f069a56b6270ff331 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,447 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv6l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,447 Skipping link: No binaries permitted for kssdutils: https://archive1.piwheels.org/simple/kssdutils/kssdutils-1.0.0-cp39-cp39-linux_armv7l.whl#sha256=0d9c0566cba326dbedbea1c1ea643cc81efe1b0b47b292f956e933d1a9fedb35 (from https://www.piwheels.org/simple/kssdutils/) 2026-03-06T17:00:32,447 Skipping link: not a file: https://www.piwheels.org/simple/kssdutils/ 2026-03-06T17:00:32,447 Skipping link: not a file: https://pypi.org/simple/kssdutils/ 2026-03-06T17:00:32,471 Given no hashes to check 1 links for project 'kssdutils': discarding no candidates 2026-03-06T17:00:32,472 Collecting kssdutils==1.2.1 2026-03-06T17:00:32,473 Created temporary directory: /tmp/pip-unpack-slac45h8 2026-03-06T17:00:32,536 Downloading kssdutils-1.2.1.tar.gz (45 kB) 2026-03-06T17:00:32,586 Added kssdutils==1.2.1 from https://files.pythonhosted.org/packages/bc/23/9cb4f9e681bcb9f0b76a4ba9ba04ee7196be39eb751f096b15c73846da91/kssdutils-1.2.1.tar.gz to build tracker '/tmp/pip-build-tracker-vwu5lt06' 2026-03-06T17:00:32,587 Running setup.py (path:/tmp/pip-wheel-hulk6_um/kssdutils_0cee8746f9144c65b87abbb15588a0a6/setup.py) egg_info for package kssdutils 2026-03-06T17:00:32,587 Created temporary directory: /tmp/pip-pip-egg-info-r3v8fdif 2026-03-06T17:00:32,588 Preparing metadata (setup.py): started 2026-03-06T17:00:32,588 Running command python setup.py egg_info 2026-03-06T17:00:33,772 running egg_info 2026-03-06T17:00:33,847 creating /tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info 2026-03-06T17:00:33,847 writing /tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/PKG-INFO 2026-03-06T17:00:33,848 writing dependency_links to /tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/dependency_links.txt 2026-03-06T17:00:33,849 writing top-level names to /tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/top_level.txt 2026-03-06T17:00:33,849 writing manifest file '/tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/SOURCES.txt' 2026-03-06T17:00:34,073 reading manifest file '/tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/SOURCES.txt' 2026-03-06T17:00:34,074 reading manifest template 'MANIFEST.in' 2026-03-06T17:00:34,078 writing manifest file '/tmp/pip-pip-egg-info-r3v8fdif/kssdutils.egg-info/SOURCES.txt' 2026-03-06T17:00:34,191 Preparing metadata (setup.py): finished with status 'done' 2026-03-06T17:00:34,195 Source in /tmp/pip-wheel-hulk6_um/kssdutils_0cee8746f9144c65b87abbb15588a0a6 has version 1.2.1, which satisfies requirement kssdutils==1.2.1 from https://files.pythonhosted.org/packages/bc/23/9cb4f9e681bcb9f0b76a4ba9ba04ee7196be39eb751f096b15c73846da91/kssdutils-1.2.1.tar.gz 2026-03-06T17:00:34,195 Removed kssdutils==1.2.1 from https://files.pythonhosted.org/packages/bc/23/9cb4f9e681bcb9f0b76a4ba9ba04ee7196be39eb751f096b15c73846da91/kssdutils-1.2.1.tar.gz from build tracker '/tmp/pip-build-tracker-vwu5lt06' 2026-03-06T17:00:34,198 Created temporary directory: /tmp/pip-unpack-dgpk9801 2026-03-06T17:00:34,198 Created temporary directory: /tmp/pip-unpack-hbk7d19v 2026-03-06T17:00:34,198 Building wheels for collected packages: kssdutils 2026-03-06T17:00:34,200 Created temporary directory: /tmp/pip-wheel-gt2gjo_2 2026-03-06T17:00:34,200 DEPRECATION: Building 'kssdutils' using the legacy setup.py bdist_wheel mechanism, which will be removed in a future version. pip 25.3 will enforce this behaviour change. A possible replacement is to use the standardized build interface by setting the `--use-pep517` option, (possibly combined with `--no-build-isolation`), or adding a `pyproject.toml` file to the source tree of 'kssdutils'. Discussion can be found at https://github.com/pypa/pip/issues/6334 2026-03-06T17:00:34,201 Building wheel for kssdutils (setup.py): started 2026-03-06T17:00:34,202 Destination directory: /tmp/pip-wheel-gt2gjo_2 2026-03-06T17:00:34,202 Running command python setup.py bdist_wheel 2026-03-06T17:00:35,318 running bdist_wheel 2026-03-06T17:00:35,608 running build 2026-03-06T17:00:35,609 running build_py 2026-03-06T17:00:35,693 creating build/lib.linux-armv7l-cpython-313 2026-03-06T17:00:35,693 copying kssdutils.py -> build/lib.linux-armv7l-cpython-313 2026-03-06T17:00:35,694 running egg_info 2026-03-06T17:00:35,798 writing kssdutils.egg-info/PKG-INFO 2026-03-06T17:00:35,799 writing dependency_links to kssdutils.egg-info/dependency_links.txt 2026-03-06T17:00:35,800 writing top-level names to kssdutils.egg-info/top_level.txt 2026-03-06T17:00:35,892 reading manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T17:00:35,894 reading manifest template 'MANIFEST.in' 2026-03-06T17:00:35,899 writing manifest file 'kssdutils.egg-info/SOURCES.txt' 2026-03-06T17:00:35,899 running build_ext 2026-03-06T17:00:36,276 building 'kssdtool' extension 2026-03-06T17:00:36,278 creating build/temp.linux-armv7l-cpython-313 2026-03-06T17:00:36,279 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c co2mco.c -o build/temp.linux-armv7l-cpython-313/co2mco.o -fopenmp 2026-03-06T17:00:36,448 co2mco.c: In function ‘combco2mco’: 2026-03-06T17:00:36,448 co2mco.c:38:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘4294967296’ to ‘0’ [-Woverflow] 2026-03-06T17:00:36,448 38 | size_t comp_sz = (1LLU << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,448 | ^ 2026-03-06T17:00:36,450 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-03-06T17:00:36,451 co2mco.c:96:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,451 96 | size_t comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,451 | ^~ 2026-03-06T17:00:36,451 co2mco.c:109:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T17:00:36,451 109 | for (unsigned int i = 0; i < comp_num; i++) { 2026-03-06T17:00:36,451 | ^ 2026-03-06T17:00:36,454 co2mco.c: In function ‘co2unitllmco’: 2026-03-06T17:00:36,454 co2mco.c:184:31: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,455 184 | unsigned int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,455 | ^~ 2026-03-06T17:00:36,455 co2mco.c:191:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 2026-03-06T17:00:36,455 191 | for (unsigned int i = 0; i < bin_sz; i++) { 2026-03-06T17:00:36,455 | ^ 2026-03-06T17:00:36,456 co2mco.c: In function ‘llmco2arrmco’: 2026-03-06T17:00:36,456 co2mco.c:213:31: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,456 213 | unsigned int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,456 | ^~ 2026-03-06T17:00:36,457 co2mco.c: In function ‘write_unit_arrmco_file’: 2026-03-06T17:00:36,458 co2mco.c:251:31: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,458 251 | unsigned int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,458 | ^~ 2026-03-06T17:00:36,458 co2mco.c: In function ‘read_unit_arrmco_file’: 2026-03-06T17:00:36,459 co2mco.c:267:31: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,459 267 | unsigned int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,459 | ^~ 2026-03-06T17:00:36,459 co2mco.c: In function ‘free_unit_arrmco’: 2026-03-06T17:00:36,459 co2mco.c:282:31: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,459 282 | unsigned int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,460 | ^~ 2026-03-06T17:00:36,460 co2mco.c: In function ‘est_unitllmco_mem’: 2026-03-06T17:00:36,460 co2mco.c:292:32: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,460 292 | unsigned int comp_sz = (1U << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,460 | ^~ 2026-03-06T17:00:36,461 co2mco.c: In function ‘precise_est_unitllmco_mem’: 2026-03-06T17:00:36,461 co2mco.c:308:32: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:36,461 308 | unsigned int comp_sz = (1U << 4 * COMPONENT_SZ); 2026-03-06T17:00:36,461 | ^~ 2026-03-06T17:00:36,760 co2mco.c: In function ‘cdb_kmerf2kmerdb’: 2026-03-06T17:00:36,761 co2mco.c:101:23: warning: array subscript 0 is outside array bounds of ‘void[0]’ [-Warray-bounds=] 2026-03-06T17:00:36,761 101 | mco_map.row_offset[0] = 0; 2026-03-06T17:00:36,761 | ~~~~~~~~~~~~~~~~~~^~~ 2026-03-06T17:00:36,761 co2mco.c:100:26: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:36,761 100 | mco_map.row_offset = malloc(comp_sz * sizeof(size_t)); 2026-03-06T17:00:36,761 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:36,863 co2mco.c: In function ‘co2unitllmco’: 2026-03-06T17:00:36,863 co2mco.c:197:20: warning: array subscript [0, 536870911] is outside array bounds of ‘mco_entry_stat_t *[0]’ [-Warray-bounds=] 2026-03-06T17:00:36,863 197 | if (mco[ind] == NULL) mco[ind] = calloc(1, sizeof(mco_entry_stat_t)); 2026-03-06T17:00:36,863 | ~~~^~~~~ 2026-03-06T17:00:36,864 co2mco.c:185:30: note: object of size 0 allocated by ‘calloc’ 2026-03-06T17:00:36,864 185 | mco_entry_stat_t **mco = calloc(comp_sz, sizeof(mco_entry_stat_t *)); 2026-03-06T17:00:36,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:36,864 co2mco.c:197:38: warning: array subscript [0, 536870911] is outside array bounds of ‘mco_entry_stat_t *[0]’ [-Warray-bounds=] 2026-03-06T17:00:36,864 197 | if (mco[ind] == NULL) mco[ind] = calloc(1, sizeof(mco_entry_stat_t)); 2026-03-06T17:00:36,864 | ~~~^~~~~ 2026-03-06T17:00:36,864 co2mco.c:185:30: note: object of size 0 allocated by ‘calloc’ 2026-03-06T17:00:36,864 185 | mco_entry_stat_t **mco = calloc(comp_sz, sizeof(mco_entry_stat_t *)); 2026-03-06T17:00:36,864 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:36,864 co2mco.c:198:22: warning: array subscript [0, 536870911] is outside array bounds of ‘mco_entry_stat_t *[0]’ [-Warray-bounds=] 2026-03-06T17:00:36,865 198 | mod = mco[ind]->g_num % GID_ARR_SZ; 2026-03-06T17:00:36,865 | ~~~^~~~~ 2026-03-06T17:00:36,865 co2mco.c:185:30: note: object of size 0 allocated by ‘calloc’ 2026-03-06T17:00:36,865 185 | mco_entry_stat_t **mco = calloc(comp_sz, sizeof(mco_entry_stat_t *)); 2026-03-06T17:00:36,865 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:36,932 co2mco.c: In function ‘read_unit_arrmco_file’: 2026-03-06T17:00:36,932 co2mco.c:273:15: warning: array subscript [0, 536870911] is outside array bounds of ‘gidobj_t *[0]’ {aka ‘unsigned int *[]’} [-Warray-bounds=] 2026-03-06T17:00:36,932 273 | arrmco[ind] = malloc(sizeof(gidobj_t) * ((unsigned int) gid_arr_len + 1)); 2026-03-06T17:00:36,932 | ~~~~~~^~~~~ 2026-03-06T17:00:36,932 co2mco.c:269:25: note: object of size 0 allocated by ‘calloc’ 2026-03-06T17:00:36,932 269 | gidobj_t **arrmco = calloc(comp_sz, sizeof(gidobj_t *)); 2026-03-06T17:00:36,932 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,010 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_composite.c -o build/temp.linux-armv7l-cpython-313/command_composite.o -fopenmp 2026-03-06T17:00:37,415 command_composite.c: In function ‘get_species_abundance’: 2026-03-06T17:00:37,415 command_composite.c:32:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T17:00:37,416 32 | if (ref_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, ref_dstat_fpath); 2026-03-06T17:00:37,416 | ^~ 2026-03-06T17:00:37,416 command_composite.c:34:72: warning: ‘%s’ directive argument is null [-Wformat-overflow=] 2026-03-06T17:00:37,416 34 | if (qry_dstat_fpath == NULL) fprintf(stderr, "cannot find %s under %s ", co_dstat, qry_dstat_fpath); 2026-03-06T17:00:37,416 | ^~ 2026-03-06T17:00:37,417 command_composite.c:64:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:37,417 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T17:00:37,417 | ^ 2026-03-06T17:00:37,417 command_composite.c:64:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:37,417 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T17:00:37,417 | ^~~~~~~~~~ 2026-03-06T17:00:37,418 command_composite.c:64:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T17:00:37,418 64 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, skch_prefix, c); 2026-03-06T17:00:37,418 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,418 command_composite.c:70:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:37,418 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T17:00:37,419 | ^ 2026-03-06T17:00:37,419 command_composite.c:70:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:37,419 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T17:00:37,419 | ^~~~~~~~~~ 2026-03-06T17:00:37,419 command_composite.c:70:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T17:00:37,419 70 | sprintf(tmpfname, "%s/%s.%d", composite_opt->refdir, idx_prefix, c); 2026-03-06T17:00:37,419 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,420 command_composite.c:76:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:37,420 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,420 | ^ 2026-03-06T17:00:37,420 command_composite.c:76:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:37,420 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,420 | ^~~~~~~~~~ 2026-03-06T17:00:37,421 command_composite.c:76:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T17:00:37,421 76 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,421 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,421 command_composite.c:82:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:37,421 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T17:00:37,421 | ^ 2026-03-06T17:00:37,422 command_composite.c:82:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:37,422 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T17:00:37,422 | ^~~~~~~~~~ 2026-03-06T17:00:37,422 command_composite.c:82:13: note: ‘sprintf’ output 4 or more bytes (assuming 269) into a destination of size 256 2026-03-06T17:00:37,422 82 | sprintf(tmpfname, "%s/%s.%d", composite_opt->qrydir, idx_prefix, c); 2026-03-06T17:00:37,422 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,423 command_composite.c:88:37: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:37,423 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,423 | ^ 2026-03-06T17:00:37,423 command_composite.c:88:31: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:37,423 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,423 | ^~~~~~~~~~~~ 2026-03-06T17:00:37,424 command_composite.c:88:13: note: ‘sprintf’ output 6 or more bytes (assuming 271) into a destination of size 256 2026-03-06T17:00:37,424 88 | sprintf(tmpfname, "%s/%s.%d.a", composite_opt->qrydir, skch_prefix, c); 2026-03-06T17:00:37,424 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,678 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist.c -o build/temp.linux-armv7l-cpython-313/command_dist.o -fopenmp 2026-03-06T17:00:37,896 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T17:00:37,897 command_dist.c:637:22: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:37,897 637 | int comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:37,897 | ^~ 2026-03-06T17:00:37,900 command_dist.c:664:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,900 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,900 | ~~^ 2026-03-06T17:00:37,901 | | 2026-03-06T17:00:37,901 | long unsigned int 2026-03-06T17:00:37,901 | %u 2026-03-06T17:00:37,901 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,901 | ~~~~~~~ 2026-03-06T17:00:37,901 | | 2026-03-06T17:00:37,901 | size_t {aka unsigned int} 2026-03-06T17:00:37,902 command_dist.c:664:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,902 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,902 | ~~^ 2026-03-06T17:00:37,902 | | 2026-03-06T17:00:37,902 | long unsigned int 2026-03-06T17:00:37,902 | %u 2026-03-06T17:00:37,903 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,903 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T17:00:37,903 | ~~~~~~~~~ 2026-03-06T17:00:37,903 | | 2026-03-06T17:00:37,903 | size_t {aka unsigned int} 2026-03-06T17:00:37,904 command_dist.c:664:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T17:00:37,904 664 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,904 | ~~^ 2026-03-06T17:00:37,904 | | 2026-03-06T17:00:37,904 | long unsigned int 2026-03-06T17:00:37,904 | %u 2026-03-06T17:00:37,904 665 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,905 666 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T17:00:37,905 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,905 | | 2026-03-06T17:00:37,905 | unsigned int 2026-03-06T17:00:37,907 command_dist.c:702:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T17:00:37,907 702 | for (int n = 0; n < fco_pos[k + 1] - fco_pos[k]; n++) { 2026-03-06T17:00:37,907 | ^ 2026-03-06T17:00:37,911 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T17:00:37,912 command_dist.c:791:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:37,912 791 | size_t comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:37,912 | ^~ 2026-03-06T17:00:37,917 command_dist.c:850:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,918 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T17:00:37,918 | ~~^ ~~~~~~~ 2026-03-06T17:00:37,918 | | | 2026-03-06T17:00:37,918 | long unsigned int size_t {aka unsigned int} 2026-03-06T17:00:37,918 | %u 2026-03-06T17:00:37,920 command_dist.c:850:93: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,920 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T17:00:37,920 | ~~^ 2026-03-06T17:00:37,920 | | 2026-03-06T17:00:37,920 | long unsigned int 2026-03-06T17:00:37,920 | %u 2026-03-06T17:00:37,920 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T17:00:37,921 | ~~~~~~~~~ 2026-03-06T17:00:37,921 | | 2026-03-06T17:00:37,921 | size_t {aka unsigned int} 2026-03-06T17:00:37,922 command_dist.c:850:98: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T17:00:37,922 850 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%d\tbatch_qrynum=%d\t%lu\t%lu\n", disf_sz, 2026-03-06T17:00:37,923 | ~~^ 2026-03-06T17:00:37,923 | | 2026-03-06T17:00:37,923 | long unsigned int 2026-03-06T17:00:37,923 | %u 2026-03-06T17:00:37,923 851 | mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, maplength, 2026-03-06T17:00:37,923 852 | (size_t) b * unitsz_distf_mapped); 2026-03-06T17:00:37,923 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,923 | | 2026-03-06T17:00:37,923 | unsigned int 2026-03-06T17:00:37,925 command_dist.c:797:13: warning: unused variable ‘fco_pos’ [-Wunused-variable] 2026-03-06T17:00:37,925 797 | size_t *fco_pos = malloc(sizeof(size_t) * (co_dstat_readin.infile_num + 1)); 2026-03-06T17:00:37,925 | ^~~~~~~ 2026-03-06T17:00:37,926 command_dist.c:796:17: warning: unused variable ‘cbd_fcode_stat’ [-Wunused-variable] 2026-03-06T17:00:37,926 796 | struct stat cbd_fcode_stat; 2026-03-06T17:00:37,926 | ^~~~~~~~~~~~~~ 2026-03-06T17:00:37,927 command_dist.c:795:31: warning: unused variable ‘cbd_fcode_comp_index_fp’ [-Wunused-variable] 2026-03-06T17:00:37,927 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T17:00:37,927 | ^~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,928 command_dist.c:795:11: warning: unused variable ‘cbd_fcode_comp_fp’ [-Wunused-variable] 2026-03-06T17:00:37,928 795 | FILE *cbd_fcode_comp_fp, *cbd_fcode_comp_index_fp; 2026-03-06T17:00:37,928 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,932 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T17:00:37,933 command_dist.c:957:25: warning: left shift count >= width of type [-Wshift-count-overflow] 2026-03-06T17:00:37,933 957 | size_t comp_sz = (1 << 4 * COMPONENT_SZ); 2026-03-06T17:00:37,933 | ^~ 2026-03-06T17:00:37,939 command_dist.c:1005:27: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 2 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,939 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,939 | ~~^ 2026-03-06T17:00:37,939 | | 2026-03-06T17:00:37,939 | long unsigned int 2026-03-06T17:00:37,939 | %u 2026-03-06T17:00:37,939 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,939 | ~~~~~~~ 2026-03-06T17:00:37,939 | | 2026-03-06T17:00:37,939 | size_t {aka unsigned int} 2026-03-06T17:00:37,941 command_dist.c:1005:92: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 7 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:37,942 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,942 | ~~^ 2026-03-06T17:00:37,942 | | 2026-03-06T17:00:37,942 | long unsigned int 2026-03-06T17:00:37,942 | %u 2026-03-06T17:00:37,942 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,942 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T17:00:37,942 | ~~~~~~~~~ 2026-03-06T17:00:37,942 | | 2026-03-06T17:00:37,942 | size_t {aka unsigned int} 2026-03-06T17:00:37,944 command_dist.c:1005:97: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 8 has type ‘unsigned int’ [-Wformat=] 2026-03-06T17:00:37,944 1005 | printf("disf_sz=%lu\trefnum=%d\tqrynum=%d\tnum_mapping_distf=%dbnum_infile=%d\t\t%lu\t%lu\tflag1:Ok\n", 2026-03-06T17:00:37,945 | ~~^ 2026-03-06T17:00:37,945 | | 2026-03-06T17:00:37,945 | long unsigned int 2026-03-06T17:00:37,945 | %u 2026-03-06T17:00:37,945 1006 | disf_sz, mco_dstat_readin.infile_num, co_dstat_readin.infile_num, num_mapping_distf, bnum_infile, 2026-03-06T17:00:37,945 1007 | maplength, (size_t) b * unitsz_distf_mapped); 2026-03-06T17:00:37,945 | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:37,945 | | 2026-03-06T17:00:37,945 | unsigned int 2026-03-06T17:00:37,950 command_dist.c: In function ‘mco_co_dist_core’: 2026-03-06T17:00:37,951 command_dist.c:1103:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘gidobj_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T17:00:37,951 1103 | for (int k = 1; k < unit_arrmco[ind][0] + 1; k++) { 2026-03-06T17:00:37,951 | ^ 2026-03-06T17:00:37,953 command_dist.c: In function ‘fname_dist_print’: 2026-03-06T17:00:37,954 command_dist.c:1150:25: warning: comparison of integer expressions of different signedness: ‘llong’ {aka ‘long long unsigned int’} and ‘__off64_t’ {aka ‘long long int’} [-Wsign-compare] 2026-03-06T17:00:37,954 1150 | for (llong i = 0; i < s.st_size / sizeof(ctx_obj_ct_t); i++) { 2026-03-06T17:00:37,954 | ^ 2026-03-06T17:00:37,959 command_dist.c: In function ‘koc_dist_print_nobin’: 2026-03-06T17:00:37,960 command_dist.c:1226:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T17:00:37,960 1226 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T17:00:37,961 | ^ 2026-03-06T17:00:37,963 command_dist.c:1232:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T17:00:37,963 1232 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T17:00:37,963 | ^ 2026-03-06T17:00:37,969 command_dist.c: In function ‘dist_print_nobin’: 2026-03-06T17:00:37,970 command_dist.c:1322:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T17:00:37,970 1322 | if ((N_max > NREF) || (N_max > ref_num)) { 2026-03-06T17:00:37,970 | ^ 2026-03-06T17:00:37,973 command_dist.c:1343:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T17:00:37,973 1343 | for (int rid = 0; rid < ref_num; rid++) { 2026-03-06T17:00:37,973 | ^ 2026-03-06T17:00:37,976 command_dist.c:1369:39: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 2026-03-06T17:00:37,976 1369 | for (int rid = 0; rid < ref_num; rid++) 2026-03-06T17:00:37,976 | ^ 2026-03-06T17:00:38,362 command_dist.c: In function ‘run_stageI._omp_fn.1’: 2026-03-06T17:00:38,363 command_dist.c:390:21: warning: ‘com_abund_fp’ may be used uninitialized [-Wmaybe-uninitialized] 2026-03-06T17:00:38,363 390 | fwrite(tmp_mem, sizeof(unsigned short) * tmpkmerct, 1, com_abund_fp); 2026-03-06T17:00:38,363 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:38,363 command_dist.c:362:40: note: ‘com_abund_fp’ was declared here 2026-03-06T17:00:38,363 362 | FILE *com_cofp, *indexfp, *com_abund_fp; 2026-03-06T17:00:38,363 | ^~~~~~~~~~~~ 2026-03-06T17:00:39,167 command_dist.c: In function ‘get_dim_shuffle’: 2026-03-06T17:00:39,168 command_dist.c:267:36: warning: ‘%s’ directive writing up to 264 bytes into a region of size 256 [-Wformat-overflow=] 2026-03-06T17:00:39,168 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T17:00:39,168 | ^~ ~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:39,168 command_dist.c:267:9: note: ‘sprintf’ output between 6 and 270 bytes into a destination of size 256 2026-03-06T17:00:39,168 267 | sprintf(shuf_infile_name, "%s.shuf", shuf_infile_name_prefix); 2026-03-06T17:00:39,168 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,082 command_dist.c: In function ‘mco_cbd_co_dist’: 2026-03-06T17:00:40,083 command_dist.c:583:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,083 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,083 | ^~ ~~~~~~~~~ 2026-03-06T17:00:40,083 command_dist.c:583:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T17:00:40,084 583 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,084 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,085 command_dist.c:612:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,085 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,085 | ^~~~~~~~~~~~~~~ 2026-03-06T17:00:40,085 command_dist.c:612:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T17:00:40,085 612 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,086 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,087 command_dist.c:668:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,088 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,088 | ^~~~~~~~~~~ 2026-03-06T17:00:40,088 command_dist.c:668:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:40,088 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,089 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,089 command_dist.c:668:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T17:00:40,089 668 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,089 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,090 command_dist.c:669:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,090 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,090 | ^~~~~ 2026-03-06T17:00:40,091 command_dist.c:669:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:40,091 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,091 | ^~~~~~~~~~~ 2026-03-06T17:00:40,092 command_dist.c:669:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T17:00:40,092 669 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,092 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,332 command_dist.c: In function ‘mco_cbdco_nobin_dist’: 2026-03-06T17:00:40,334 command_dist.c:750:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,334 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,334 | ^~ ~~~~~~~~~ 2026-03-06T17:00:40,334 command_dist.c:750:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T17:00:40,335 750 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,335 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,336 command_dist.c:777:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,336 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,336 | ^~~~~~~~~~~~~~~ 2026-03-06T17:00:40,337 command_dist.c:777:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T17:00:40,337 777 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,337 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,338 command_dist.c:810:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,338 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T17:00:40,338 | ^~~~~~~~~~~~~ 2026-03-06T17:00:40,339 command_dist.c:810:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T17:00:40,339 810 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T17:00:40,339 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,340 command_dist.c:836:39: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,340 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T17:00:40,341 | ^ 2026-03-06T17:00:40,342 command_dist.c:836:33: note: directive argument in the range [0, 536870912] 2026-03-06T17:00:40,342 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T17:00:40,342 | ^~~~~~~~~~ 2026-03-06T17:00:40,343 command_dist.c:836:8: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T17:00:40,343 836 | sprintf(mco_index_fcode, "%s/%s.%d", refmco_dname, mco_idx_prefix, j); 2026-03-06T17:00:40,343 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,344 command_dist.c:838:34: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,344 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T17:00:40,344 | ^ 2026-03-06T17:00:40,345 command_dist.c:838:28: note: directive argument in the range [0, 536870912] 2026-03-06T17:00:40,345 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T17:00:40,345 | ^~~~~~~~~~ 2026-03-06T17:00:40,346 command_dist.c:838:9: note: ‘sprintf’ output 4 or more bytes (assuming 267) into a destination of size 256 2026-03-06T17:00:40,346 838 | sprintf(mco_fcode, "%s/%s.%d", refmco_dname, mco_gids_prefix, j); 2026-03-06T17:00:40,346 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,605 command_dist.c: In function ‘mco_cbd_koc_compatible_dist’: 2026-03-06T17:00:40,607 command_dist.c:914:37: warning: ‘%s’ directive writing 13 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,607 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,607 | ^~ ~~~~~~~~~ 2026-03-06T17:00:40,608 command_dist.c:914:5: note: ‘sprintf’ output between 15 and 270 bytes into a destination of size 256 2026-03-06T17:00:40,608 914 | sprintf(refmco_dstat_fpath, "%s/%s", refmco_dname, mco_dstat); 2026-03-06T17:00:40,608 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,610 command_dist.c:943:25: warning: ‘/sharedk_ct.dat’ directive writing 15 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,610 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,610 | ^~~~~~~~~~~~~~~ 2026-03-06T17:00:40,611 command_dist.c:943:5: note: ‘sprintf’ output between 16 and 271 bytes into a destination of size 256 2026-03-06T17:00:40,611 943 | sprintf(onedist, "%s/sharedk_ct.dat", distout_dir); 2026-03-06T17:00:40,611 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,612 command_dist.c:977:23: warning: ‘/distance.out’ directive writing 13 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,612 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T17:00:40,612 | ^~~~~~~~~~~~~ 2026-03-06T17:00:40,613 command_dist.c:977:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T17:00:40,614 977 | sprintf(distf, "%s/distance.out", distout_dir); 2026-03-06T17:00:40,614 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,616 command_dist.c:1009:41: warning: ‘/mco.index.’ directive writing 11 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,616 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,616 | ^~~~~~~~~~~ 2026-03-06T17:00:40,617 command_dist.c:1009:38: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:40,617 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,617 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,619 command_dist.c:1009:13: note: ‘sprintf’ output between 13 and 278 bytes into a destination of size 256 2026-03-06T17:00:40,619 1009 | sprintf(mco_index_fcode, "%s/mco.index.%d", refmco_dname, j); 2026-03-06T17:00:40,619 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,620 command_dist.c:1010:35: warning: ‘/mco.’ directive writing 5 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 2026-03-06T17:00:40,620 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,620 | ^~~~~ 2026-03-06T17:00:40,621 command_dist.c:1010:32: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:40,621 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,621 | ^~~~~~~~~~~ 2026-03-06T17:00:40,623 command_dist.c:1010:13: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T17:00:40,623 1010 | sprintf(mco_fcode, "%s/mco.%d", refmco_dname, j); 2026-03-06T17:00:40,623 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,891 command_dist.c: In function ‘combine_queries’: 2026-03-06T17:00:40,893 command_dist.c:1479:41: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:40,893 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T17:00:40,893 | ^ 2026-03-06T17:00:40,895 command_dist.c:1479:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:40,895 1479 | sprintf(one_kmerct_list_name, "%s/%s", co_dir, kmerct_list_fname); 2026-03-06T17:00:40,895 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,897 command_dist.c:1486:40: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:40,897 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T17:00:40,897 | ^ 2026-03-06T17:00:40,899 command_dist.c:1486:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:40,899 1486 | sprintf(one_infilename_name, "%s/%s", co_dir, fname_fname); 2026-03-06T17:00:40,899 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:40,902 command_dist.c:1590:32: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:40,902 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T17:00:40,902 | ^~ ~~~~~~~~ 2026-03-06T17:00:40,904 command_dist.c:1590:5: note: ‘sprintf’ output between 14 and 269 bytes into a destination of size 256 2026-03-06T17:00:40,904 1590 | sprintf(one_stat_name, "%s/%s", co_dir, co_dstat); 2026-03-06T17:00:40,905 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,388 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_dist_wrapper.c -o build/temp.linux-armv7l-cpython-313/command_dist_wrapper.o -fopenmp 2026-03-06T17:00:41,562 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_set.c -o build/temp.linux-armv7l-cpython-313/command_set.o -fopenmp 2026-03-06T17:00:41,732 command_set.c: In function ‘sketch_union’: 2026-03-06T17:00:41,732 command_set.c:77:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘4294967296’ to ‘0’ [-Woverflow] 2026-03-06T17:00:41,732 77 | size_t comp_sz = (1LLU << 4*COMPONENT_SZ); 2026-03-06T17:00:41,732 | ^ 2026-03-06T17:00:41,735 command_set.c: In function ‘sketch_operate’: 2026-03-06T17:00:41,735 command_set.c:148:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘4294967296’ to ‘0’ [-Woverflow] 2026-03-06T17:00:41,735 148 | size_t comp_sz = (1LLU << 4*COMPONENT_SZ); 2026-03-06T17:00:41,735 | ^ 2026-03-06T17:00:41,737 command_set.c:178:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 2026-03-06T17:00:41,737 178 | for(int n = 0; n < fco_pos[i+1] - fco_pos[i]; n++){ 2026-03-06T17:00:41,737 | ^ 2026-03-06T17:00:41,739 command_set.c: In function ‘uniq_sketch_union’: 2026-03-06T17:00:41,740 command_set.c:240:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘4294967296’ to ‘0’ [-Woverflow] 2026-03-06T17:00:41,740 240 | size_t comp_sz = (1LLU << 4*COMPONENT_SZ); 2026-03-06T17:00:41,740 | ^ 2026-03-06T17:00:41,749 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T17:00:41,749 command_set.c:457:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T17:00:41,750 457 | free(co_dstat_fpath); 2026-03-06T17:00:41,750 | ^~~~~~~~~~~~~~ 2026-03-06T17:00:41,750 In file included from kssdheaders/global_basic.h:159, 2026-03-06T17:00:41,750 from command_set.c:15: 2026-03-06T17:00:41,750 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T17:00:41,750 687 | extern void free (void *__ptr) __THROW; 2026-03-06T17:00:41,750 | ~~~~~~^~~~~ 2026-03-06T17:00:41,751 command_set.c:465:22: warning: conversion from ‘long long unsigned int’ to ‘size_t’ {aka ‘unsigned int’} changes value from ‘4294967296’ to ‘0’ [-Woverflow] 2026-03-06T17:00:41,751 465 | size_t comp_sz = (1LLU << 4*COMPONENT_SZ); 2026-03-06T17:00:41,751 | ^ 2026-03-06T17:00:41,757 command_set.c: In function ‘grouping_genomes’: 2026-03-06T17:00:41,757 command_set.c:562:10: warning: passing argument 1 of ‘free’ discards ‘const’ qualifier from pointer target type [-Wdiscarded-qualifiers] 2026-03-06T17:00:41,758 562 | free(co_dstat_fpath); 2026-03-06T17:00:41,758 | ^~~~~~~~~~~~~~ 2026-03-06T17:00:41,758 /usr/include/stdlib.h:687:25: note: expected ‘void *’ but argument is of type ‘const char *’ 2026-03-06T17:00:41,758 687 | extern void free (void *__ptr) __THROW; 2026-03-06T17:00:41,758 | ~~~~~~^~~~~ 2026-03-06T17:00:41,899 command_set.c: In function ‘sketch_union’: 2026-03-06T17:00:41,899 command_set.c:89:17: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:41,899 89 | dict[tmpcbdco/64] |= ( 0x8000000000000000LLU >> (tmpcbdco % 64) ) ; 2026-03-06T17:00:41,899 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:41,899 command_set.c:78:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:41,899 78 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:41,899 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,899 command_set.c:89:17: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:41,900 89 | dict[tmpcbdco/64] |= ( 0x8000000000000000LLU >> (tmpcbdco % 64) ) ; 2026-03-06T17:00:41,900 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:41,900 command_set.c:78:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:41,900 78 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:41,900 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,914 command_set.c:71:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:41,914 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:41,914 | ^ 2026-03-06T17:00:41,914 command_set.c:71:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:41,915 71 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:41,915 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,915 command_set.c:82:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:41,915 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:41,915 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:41,915 command_set.c:82:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:41,915 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:41,915 | ^~~~~~~~~~ 2026-03-06T17:00:41,915 command_set.c:82:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:41,915 82 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:41,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,916 command_set.c:92:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:41,916 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T17:00:41,916 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:41,916 command_set.c:92:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:41,916 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T17:00:41,916 | ^~~~~~~~~~ 2026-03-06T17:00:41,916 command_set.c:92:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T17:00:41,916 92 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,pan_prefix,i); 2026-03-06T17:00:41,916 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,998 command_set.c: In function ‘sketch_operate’: 2026-03-06T17:00:41,998 command_set.c:179:49: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:41,998 179 | if( set_opt.operation == ( (dict[ cbd_fcode_mem[ fco_pos[i] + n ]/64 ] & (0x8000000000000000LLU >> (cbd_fcode_mem[ fco_pos[i] + n ] % 64)) ) > 0 ) ){ 2026-03-06T17:00:41,998 | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,998 command_set.c:149:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:41,998 149 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:41,998 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,998 command_set.c:162:17: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:41,999 162 | dict[tmppanco/64] |= ( 0x8000000000000000LLU >> (tmppanco % 64) ) ; 2026-03-06T17:00:41,999 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:41,999 command_set.c:149:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:41,999 149 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:41,999 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:41,999 command_set.c:162:17: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:41,999 162 | dict[tmppanco/64] |= ( 0x8000000000000000LLU >> (tmppanco % 64) ) ; 2026-03-06T17:00:41,999 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:41,999 command_set.c:149:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:41,999 149 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,000 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,032 command_set.c:153:29: warning: ‘%s’ directive writing 3 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,032 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T17:00:42,032 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,033 command_set.c:153:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,033 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T17:00:42,033 | ^~~~~~~~~~ 2026-03-06T17:00:42,033 command_set.c:153:9: note: ‘sprintf’ output between 7 and 272 bytes into a destination of size 256 2026-03-06T17:00:42,033 153 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, pan_prefix, c); 2026-03-06T17:00:42,033 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,033 command_set.c:155:33: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,033 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T17:00:42,033 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,033 command_set.c:155:29: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,033 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T17:00:42,034 | ^~~~~~~~~~ 2026-03-06T17:00:42,034 command_set.c:155:13: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T17:00:42,034 155 | sprintf(tmppath,"%s/%s.%d",set_opt.pansketchpath, uniq_pan_prefix, c); 2026-03-06T17:00:42,034 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,034 command_set.c:165:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,034 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,034 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,034 command_set.c:165:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,034 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,034 | ^~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,034 command_set.c:165:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,035 165 | sprintf(tmppath,"%s/%s.index.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,035 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,035 command_set.c:169:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,035 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,035 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,035 command_set.c:169:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,035 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,035 | ^~~~~~~~~~ 2026-03-06T17:00:42,035 command_set.c:169:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,035 169 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix, c); 2026-03-06T17:00:42,035 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,036 command_set.c:174:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,036 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,036 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,036 command_set.c:174:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,036 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,036 | ^~~~~~~~~~ 2026-03-06T17:00:42,036 command_set.c:174:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,036 174 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,036 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,036 command_set.c:187:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,036 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,037 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,037 command_set.c:187:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,037 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,037 | ^~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,037 command_set.c:187:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,037 187 | sprintf(tmppath,"%s/%s.index.%d",set_opt.outdir,skch_prefix, c); 2026-03-06T17:00:42,037 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,037 command_set.c:192:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,037 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,037 | ^ 2026-03-06T17:00:42,038 command_set.c:192:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:42,038 192 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,038 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,174 command_set.c: In function ‘uniq_sketch_union’: 2026-03-06T17:00:42,174 command_set.c:254:22: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,174 254 | if ( dict[tmpcbdco/64] & ( 0x8000000000000000LLU >> (tmpcbdco % 64) )) 2026-03-06T17:00:42,174 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:42,174 command_set.c:241:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,174 241 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,174 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,174 command_set.c:255:22: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,175 255 | dict2[tmpcbdco/64] &= ~( 0x8000000000000000LLU >> (tmpcbdco % 64) ); 2026-03-06T17:00:42,175 | ~~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:42,175 command_set.c:242:28: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,175 242 | llong* dict2 = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,175 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,175 command_set.c:255:22: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,175 255 | dict2[tmpcbdco/64] &= ~( 0x8000000000000000LLU >> (tmpcbdco % 64) ); 2026-03-06T17:00:42,175 | ~~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:42,175 command_set.c:242:28: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,175 242 | llong* dict2 = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,175 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,176 command_set.c:256:17: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,176 256 | dict[tmpcbdco/64] |= ( 0x8000000000000000LLU >> (tmpcbdco % 64) ) ; 2026-03-06T17:00:42,176 | ~~~~^~~~~~~~~~~~~ 2026-03-06T17:00:42,176 command_set.c:241:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,176 241 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,176 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,194 command_set.c:219:39: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,194 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-06T17:00:42,194 | ^ 2026-03-06T17:00:42,194 command_set.c:219:17: note: ‘sprintf’ output between 11 and 21 bytes into a destination of size 20 2026-03-06T17:00:42,194 219 | sprintf(unionco,"%s.%d",uniq_pan_prefix,i); 2026-03-06T17:00:42,194 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,195 command_set.c:234:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,195 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,195 | ^ 2026-03-06T17:00:42,195 command_set.c:234:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:42,195 234 | sprintf(outpath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,195 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,195 command_set.c:247:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,195 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:42,195 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,196 command_set.c:247:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,196 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:42,196 | ^~~~~~~~~~ 2026-03-06T17:00:42,196 command_set.c:247:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,196 247 | sprintf(outpath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,i); 2026-03-06T17:00:42,196 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,196 command_set.c:259:29: warning: ‘%s’ directive writing 8 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,197 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T17:00:42,197 | ^~ ~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,197 command_set.c:259:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,197 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T17:00:42,197 | ^~~~~~~~~~ 2026-03-06T17:00:42,197 command_set.c:259:9: note: ‘sprintf’ output between 12 and 277 bytes into a destination of size 256 2026-03-06T17:00:42,197 259 | sprintf(outpath,"%s/%s.%d",set_opt.outdir,uniq_pan_prefix,i); 2026-03-06T17:00:42,197 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,317 command_set.c: In function ‘combin_pans’: 2026-03-06T17:00:42,318 command_set.c:297:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,318 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,318 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,318 command_set.c:297:25: note: directive argument in the range [0, 1073741823] 2026-03-06T17:00:42,318 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,318 | ^~~~~~~~~~ 2026-03-06T17:00:42,319 command_set.c:297:9: note: ‘sprintf’ output between 10 and 274 bytes into a destination of size 256 2026-03-06T17:00:42,319 297 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,319 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,319 command_set.c:300:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,319 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,319 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,320 command_set.c:300:25: note: directive argument in the range [0, 1073741823] 2026-03-06T17:00:42,320 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,320 | ^~~~~~~~~~ 2026-03-06T17:00:42,320 command_set.c:300:9: note: ‘sprintf’ output between 16 and 280 bytes into a destination of size 256 2026-03-06T17:00:42,320 300 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,320 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,321 command_set.c:342:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,321 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,321 | ^ 2026-03-06T17:00:42,321 command_set.c:342:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:42,321 342 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,321 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,489 command_set.c: In function ‘combin_subset_pans’: 2026-03-06T17:00:42,489 command_set.c:492:25: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,489 492 | dict[tmpcombco[i]/64] |= ( 0x8000000000000000LLU >> (tmpcombco[i] % 64) ) ; 2026-03-06T17:00:42,489 | ~~~~^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,490 command_set.c:466:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,490 466 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,490 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,490 command_set.c:492:25: warning: array subscript 0 is outside array bounds of ‘llong[0]’ {aka ‘long long unsigned int[]’} [-Warray-bounds=] 2026-03-06T17:00:42,490 492 | dict[tmpcombco[i]/64] |= ( 0x8000000000000000LLU >> (tmpcombco[i] % 64) ) ; 2026-03-06T17:00:42,491 | ~~~~^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,491 command_set.c:466:27: note: object of size 0 allocated by ‘malloc’ 2026-03-06T17:00:42,491 466 | llong* dict = (llong*)malloc(comp_sz/8); 2026-03-06T17:00:42,491 | ^~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,526 command_set.c:469:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,526 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,526 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,526 command_set.c:469:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,526 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,527 | ^~~~~~~~~~ 2026-03-06T17:00:42,527 command_set.c:469:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,527 469 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,527 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,528 command_set.c:475:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,528 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,528 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,528 command_set.c:475:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,529 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,529 | ^~~~~~~~~~ 2026-03-06T17:00:42,529 command_set.c:475:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,529 475 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,529 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,530 command_set.c:481:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,530 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,530 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,531 command_set.c:481:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,531 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,531 | ^~~~~~~~~~ 2026-03-06T17:00:42,531 command_set.c:481:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,531 481 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,531 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,532 command_set.c:512:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,532 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,533 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,533 command_set.c:512:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,533 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,533 | ^~~~~~~~~~ 2026-03-06T17:00:42,534 command_set.c:512:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,534 512 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,534 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,534 command_set.c:523:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,534 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,535 | ^ 2026-03-06T17:00:42,535 command_set.c:523:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:42,535 523 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,535 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,745 command_set.c: In function ‘grouping_genomes’: 2026-03-06T17:00:42,746 command_set.c:574:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,746 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,746 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,747 command_set.c:574:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,747 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,747 | ^~~~~~~~~~ 2026-03-06T17:00:42,748 command_set.c:574:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,748 574 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,skch_prefix,c); 2026-03-06T17:00:42,748 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,749 command_set.c:580:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,749 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,749 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,749 command_set.c:580:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,750 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,750 | ^~~~~~~~~~ 2026-03-06T17:00:42,750 command_set.c:580:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,750 580 | sprintf(tmppath,"%s/%s.%d",set_opt.insketchpath,idx_prefix,c); 2026-03-06T17:00:42,750 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,752 command_set.c:612:29: warning: ‘%s’ directive writing 6 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,752 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,752 | ^~ ~~~~~~~~~~~ 2026-03-06T17:00:42,752 command_set.c:612:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,752 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,753 | ^~~~~~~~~~ 2026-03-06T17:00:42,753 command_set.c:612:9: note: ‘sprintf’ output between 10 and 275 bytes into a destination of size 256 2026-03-06T17:00:42,753 612 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,skch_prefix,c); 2026-03-06T17:00:42,753 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,755 command_set.c:634:29: warning: ‘%s’ directive writing 12 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 2026-03-06T17:00:42,755 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,755 | ^~ ~~~~~~~~~~ 2026-03-06T17:00:42,755 command_set.c:634:25: note: directive argument in the range [-2147483641, 2147483646] 2026-03-06T17:00:42,755 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,755 | ^~~~~~~~~~ 2026-03-06T17:00:42,756 command_set.c:634:9: note: ‘sprintf’ output between 16 and 281 bytes into a destination of size 256 2026-03-06T17:00:42,756 634 | sprintf(tmppath,"%s/%s.%d",set_opt.outdir,idx_prefix,c); 2026-03-06T17:00:42,756 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:42,757 command_set.c:645:27: warning: ‘sprintf’ may write a terminating nul past the end of the destination [-Wformat-overflow=] 2026-03-06T17:00:42,757 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,757 | ^ 2026-03-06T17:00:42,758 command_set.c:645:5: note: ‘sprintf’ output 2 or more bytes (assuming 257) into a destination of size 256 2026-03-06T17:00:42,758 645 | sprintf(tmppath,"%s/%s",set_opt.outdir,co_dstat); 2026-03-06T17:00:42,758 | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 2026-03-06T17:00:43,037 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c command_shuffle.c -o build/temp.linux-armv7l-cpython-313/command_shuffle.o -fopenmp 2026-03-06T17:00:43,351 arm-linux-gnueabihf-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -fPIC -Ikssdheaders -I/usr/include/python3.13 -c global_basic.c -o build/temp.linux-armv7l-cpython-313/global_basic.o -fopenmp 2026-03-06T17:00:43,528 global_basic.c: In function ‘organize_infile_list’: 2026-03-06T17:00:43,528 global_basic.c:195:20: error: implicit declaration of function ‘isspace’ [-Wimplicit-function-declaration] 2026-03-06T17:00:43,529 195 | while (isspace(*buf)) buf++; 2026-03-06T17:00:43,529 | ^~~~~~~ 2026-03-06T17:00:43,529 global_basic.c:35:1: note: include ‘’ or provide a declaration of ‘isspace’ 2026-03-06T17:00:43,529 34 | #include 2026-03-06T17:00:43,529 +++ |+#include 2026-03-06T17:00:43,529 35 | 2026-03-06T17:00:43,529 global_basic.c:201:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:43,529 201 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T17:00:43,530 | ~~^ 2026-03-06T17:00:43,530 | | 2026-03-06T17:00:43,530 | long unsigned int 2026-03-06T17:00:43,530 | %u 2026-03-06T17:00:43,530 202 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T17:00:43,530 | ~~~~~~~~~~~ 2026-03-06T17:00:43,530 | | 2026-03-06T17:00:43,530 | size_t {aka unsigned int} 2026-03-06T17:00:43,531 global_basic.c:233:69: warning: format ‘%lu’ expects argument of type ‘long unsigned int’, but argument 6 has type ‘size_t’ {aka ‘unsigned int’} [-Wformat=] 2026-03-06T17:00:43,531 233 | "the input list: %s\n %dth line: %s has %lu characters exceed the maximal allowed length %d", 2026-03-06T17:00:43,531 | ~~^ 2026-03-06T17:00:43,531 | | 2026-03-06T17:00:43,531 | long unsigned int 2026-03-06T17:00:43,531 | %u 2026-03-06T17:00:43,532 234 | list_path, file_num, buf, strlen(buf), PATHLEN); 2026-03-06T17:00:43,532 | ~~~~~~~~~~~ 2026-03-06T17:00:43,532 | | 2026-03-06T17:00:43,532 | size_t {aka unsigned int} 2026-03-06T17:00:43,551 error: command '/usr/bin/arm-linux-gnueabihf-gcc' failed with exit code 1 2026-03-06T17:00:43,711 ERROR: python setup.py bdist_wheel exited with 1 2026-03-06T17:00:43,723 [bold magenta]full command[/]: [blue]/usr/bin/python3 -u -c ' 2026-03-06T17:00:43,723 exec(compile('"'"''"'"''"'"' 2026-03-06T17:00:43,723 # This is -- a caller that pip uses to run setup.py 2026-03-06T17:00:43,723 # 2026-03-06T17:00:43,723 # - It imports setuptools before invoking setup.py, to enable projects that directly 2026-03-06T17:00:43,723 # import from `distutils.core` to work with newer packaging standards. 2026-03-06T17:00:43,723 # - It provides a clear error message when setuptools is not installed. 2026-03-06T17:00:43,723 # - It sets `sys.argv[0]` to the underlying `setup.py`, when invoking `setup.py` so 2026-03-06T17:00:43,723 # setuptools doesn'"'"'t think the script is `-c`. This avoids the following warning: 2026-03-06T17:00:43,723 # manifest_maker: standard file '"'"'-c'"'"' not found". 2026-03-06T17:00:43,723 # - It generates a shim setup.py, for handling setup.cfg-only projects. 2026-03-06T17:00:43,723 import os, sys, tokenize, traceback 2026-03-06T17:00:43,723 2026-03-06T17:00:43,723 try: 2026-03-06T17:00:43,723 import setuptools 2026-03-06T17:00:43,723 except ImportError: 2026-03-06T17:00:43,723 print( 2026-03-06T17:00:43,723 "ERROR: Can not execute `setup.py` since setuptools failed to import in " 2026-03-06T17:00:43,723 "the build environment with exception:", 2026-03-06T17:00:43,723 file=sys.stderr, 2026-03-06T17:00:43,723 ) 2026-03-06T17:00:43,723 traceback.print_exc() 2026-03-06T17:00:43,723 sys.exit(1) 2026-03-06T17:00:43,723 2026-03-06T17:00:43,723 __file__ = %r 2026-03-06T17:00:43,723 sys.argv[0] = __file__ 2026-03-06T17:00:43,723 2026-03-06T17:00:43,723 if os.path.exists(__file__): 2026-03-06T17:00:43,723 filename = __file__ 2026-03-06T17:00:43,723 with tokenize.open(__file__) as f: 2026-03-06T17:00:43,723 setup_py_code = f.read() 2026-03-06T17:00:43,723 else: 2026-03-06T17:00:43,723 filename = "" 2026-03-06T17:00:43,723 setup_py_code = "from setuptools import setup; setup()" 2026-03-06T17:00:43,723 2026-03-06T17:00:43,723 exec(compile(setup_py_code, filename, "exec")) 2026-03-06T17:00:43,723 '"'"''"'"''"'"' % ('"'"'/tmp/pip-wheel-hulk6_um/kssdutils_0cee8746f9144c65b87abbb15588a0a6/setup.py'"'"',), "", "exec"))' bdist_wheel -d /tmp/pip-wheel-gt2gjo_2[/] 2026-03-06T17:00:43,723 [bold magenta]cwd[/]: /tmp/pip-wheel-hulk6_um/kssdutils_0cee8746f9144c65b87abbb15588a0a6/ 2026-03-06T17:00:43,723 Building wheel for kssdutils (setup.py): finished with status 'error' 2026-03-06T17:00:43,724 ERROR: Failed building wheel for kssdutils 2026-03-06T17:00:43,725 Running setup.py clean for kssdutils 2026-03-06T17:00:43,725 Running command python setup.py clean 2026-03-06T17:00:45,112 running clean 2026-03-06T17:00:45,261 removing 'build/temp.linux-armv7l-cpython-313' (and everything under it) 2026-03-06T17:00:45,261 removing 'build/lib.linux-armv7l-cpython-313' (and everything under it) 2026-03-06T17:00:45,262 'build/bdist.linux-armv7l' does not exist -- can't clean it 2026-03-06T17:00:45,262 'build/scripts-3.13' does not exist -- can't clean it 2026-03-06T17:00:45,262 removing 'build' 2026-03-06T17:00:45,374 Failed to build kssdutils 2026-03-06T17:00:45,374 ERROR: Failed to build one or more wheels 2026-03-06T17:00:45,375 Exception information: 2026-03-06T17:00:45,375 Traceback (most recent call last): 2026-03-06T17:00:45,375 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 105, in _run_wrapper 2026-03-06T17:00:45,375 status = _inner_run() 2026-03-06T17:00:45,375 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 96, in _inner_run 2026-03-06T17:00:45,375 return self.run(options, args) 2026-03-06T17:00:45,375 ~~~~~~~~^^^^^^^^^^^^^^^ 2026-03-06T17:00:45,375 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 68, in wrapper 2026-03-06T17:00:45,375 return func(self, options, args) 2026-03-06T17:00:45,375 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 180, in run 2026-03-06T17:00:45,375 raise CommandError("Failed to build one or more wheels") 2026-03-06T17:00:45,375 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-03-06T17:00:45,380 Removed build tracker: '/tmp/pip-build-tracker-vwu5lt06'