2026-03-09T19:07:35,399 Created temporary directory: /tmp/pip-ephem-wheel-cache-e5ht3k9n
2026-03-09T19:07:35,401 Created temporary directory: /tmp/pip-build-tracker-wf9tzj1c
2026-03-09T19:07:35,402 Initialized build tracking at /tmp/pip-build-tracker-wf9tzj1c
2026-03-09T19:07:35,402 Created build tracker: /tmp/pip-build-tracker-wf9tzj1c
2026-03-09T19:07:35,403 Entered build tracker: /tmp/pip-build-tracker-wf9tzj1c
2026-03-09T19:07:35,404 Created temporary directory: /tmp/pip-wheel-w8dqevwd
2026-03-09T19:07:35,407 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-09T19:07:35,409 Created temporary directory: /tmp/pip-ephem-wheel-cache-z7xnovof
2026-03-09T19:07:35,434 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-09T19:07:35,438 2 location(s) to search for versions of galaxy-tool-util:
2026-03-09T19:07:35,438 * https://pypi.org/simple/galaxy-tool-util/
2026-03-09T19:07:35,438 * https://www.piwheels.org/simple/galaxy-tool-util/
2026-03-09T19:07:35,438 Fetching project page and analyzing links: https://pypi.org/simple/galaxy-tool-util/
2026-03-09T19:07:35,439 Getting page https://pypi.org/simple/galaxy-tool-util/
2026-03-09T19:07:35,441 Found index url https://pypi.org/simple
2026-03-09T19:07:35,598 Fetched page https://pypi.org/simple/galaxy-tool-util/ as application/vnd.pypi.simple.v1+json
2026-03-09T19:07:35,627   Found link https://files.pythonhosted.org/packages/68/b2/9b2647b039cb24bd33bcc14601d153b38793115c044e8e07c3e1b87ccda4/galaxy-tool-util-19.9.0.dev0.tar.gz (from https://pypi.org/simple/galaxy-tool-util/), version: 19.9.0.dev0
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2026-03-09T19:07:35,646   Found link https://files.pythonhosted.org/packages/87/f3/2f1847ca0d9abd107785f3a5a0eea91d989a767a6ff4e9f2de997c2a567d/galaxy-tool-util-20.5.0.dev1.tar.gz (from https://pypi.org/simple/galaxy-tool-util/), version: 20.5.0.dev1
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2026-03-09T19:07:35,748   Found link https://files.pythonhosted.org/packages/65/82/2fdbd4eff3ca3802eac88dc064ccaab07e1254291f861e388f543a1d0d95/galaxy_tool_util-25.1.1.tar.gz (from https://pypi.org/simple/galaxy-tool-util/) (requires-python:>=3.8), version: 25.1.1
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2026-03-09T19:07:35,954   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.3-py3-none-any.whl#sha256=542bb05f9a8a24d6b9a4277209fe55aae0f9601a4f12d4c8bca63efeb18c8662 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,955   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.2-py3-none-any.whl#sha256=808cd42183ec0d920334e9bf7991b7980f15d228cf9e51660f9fe818b8ed5c88 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,955   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.1.1-py3-none-any.whl#sha256=0b196fedfdd0976e81cf7c9f04af6b251eb3bfa4278c0887b1f4445b673f94ee (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,956   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.3-py3-none-any.whl#sha256=db96cadcc6f8e56d6be3cfa62f75c2344295e8ccbfd6d9275c6ce88da370dcff (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,957   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.2-py3-none-any.whl#sha256=c085d0b1a9def308de290fd6d681b37bb7f37c4e46e042b237db9caf1935b04c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,957   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.1-py3-none-any.whl#sha256=9cd9f379d45d5d069f014b0facb8a1d9632392022b59567f98006fe63446225c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,958   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-24.0.0-py3-none-any.whl#sha256=927f4fdf625da4aca1532a44f70edfe0a7d407bc53e2373117966c7385fd9a09 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,959   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.2.1-py3-none-any.whl#sha256=d693c91ba9a264e4f12b4c75e9f4e420fb3560f86f3a048f92a5b05918cb8b28 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,959   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.2.dev0-py3-none-any.whl#sha256=bb796ad2a4f5657c25f7312e7c8d0f46d3c7232be9391d04550f8e466a951bfa (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,960   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.4-py3-none-any.whl#sha256=546d3558e22fda293e159d0f7eb93f11e147244a69482877ec0599f257762d3c (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,960   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.3-py3-none-any.whl#sha256=59b0e65740b5a9341df7c1885b04493cdd08b454fb1e1645e076bb1cba2f5576 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,961   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.2-py3-none-any.whl#sha256=8e7c8c2f0d753904d324796a652cc0ca7656fa1fb3c0af639bd630cfd7f4bf40 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,961   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.1-py3-none-any.whl#sha256=bc7f9b0857a2248be35d39f61778d0636c4a6cb52d965fdea09729ad0b34795e (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,962   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.1.dev0-py3-none-any.whl#sha256=2748d1c5a2fb05e4ba6137d14bf7b064e15f3a95303d9d0151cae644ad93dca4 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,963   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.6-py3-none-any.whl#sha256=e3b7b0358c03febefd7bb9f83eb4741dd096f91f3dc40e0d3792fc1923531418 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,964   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.5-py3-none-any.whl#sha256=c9254456b0a8fe9a3a2f9627774f4d649a84f0e54c3fa5a86191e87b596b5957 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,964   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.4-py3-none-any.whl#sha256=64b4df3ef8f64c4b78b97726e351f80acea60d6b21f9711b5c50af816397d87e (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,965   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.3-py3-none-any.whl#sha256=5be4a6a61b643f5ad95d7dd8d92daf9b27be5b58a7640620470dd8316d5502d3 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,965   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.2-py3-none-any.whl#sha256=ce2dab03064a3b13a28f913b3da8153f58e63211af0fda6a2973d57993807f43 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,966   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-23.0.1-py3-none-any.whl#sha256=ad17f422cdcfb16128e101b0d47abbb1c76924db7b47a898ee2edfbbf3e05b9a (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,967   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev3-py3-none-any.whl#sha256=67e932f2915049537c6620b254598bff4e579e3859844999d68fa2f5945acf8f (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,967   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev2-py3-none-any.whl#sha256=bfcb8dbe5c89c8ce9270720e64ebf7b71fa7fa08b7e221c2d89481d553d28395 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,968   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev1-py3-none-any.whl#sha256=5d1132ac3a279cf8879a16c569397370b1c436b66247f46fdf2f3a954e330e6a (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,968   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.5.0.dev0-py3-none-any.whl#sha256=911101bcd932210c54463069e3120352c34b2b9123fbf6e32727e1ce9f5456f9 (from https://www.piwheels.org/simple/galaxy-tool-util/) (requires-python:>=3.7)
2026-03-09T19:07:35,969   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.5-py2.py3-none-any.whl#sha256=9894efec3fbc3f98e89685fb42a2fc7daa67cdce0e0e6dfb79905269e2ed3e45 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,969   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.4-py2.py3-none-any.whl#sha256=b90ea2c90c0b73b9e25a07cbcc5d43eca725d97d3f50b028e7fd54d8b70d7e12 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,970   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.3-py2.py3-none-any.whl#sha256=0c68fd3ac2d2d7e19a7cac3f59dcb9e0caf97fe6cd371fc76100c3dc86e32b03 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,971   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.2-py2.py3-none-any.whl#sha256=fd9a83bf0e258eff186c6370c885532646ec59cc7978954eca3b4c079ee9057a (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,971   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-22.1.1-py2.py3-none-any.whl#sha256=d5ed73dc1c329c832ec7141f0781df7f053d89af344c8efe6915a4d898cdf5d4 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,972   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.2-py2.py3-none-any.whl#sha256=0cf7801e7f12ab1ba9c9f196540d7c0fcf9ba139259eb0f6109a98e1e78ae072 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,972   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.1-py2.py3-none-any.whl#sha256=f0791103c6062293d51b3f697ff4057bcd90ed9b5642f0d152eea20ef43d9b35 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,973   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.9.0-py2.py3-none-any.whl#sha256=cca434bae57fd8b7a80f84ec85bac9084489d9074a0ec692fb3bdaea47b7e8dd (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,974   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.2-py2.py3-none-any.whl#sha256=a84e8ee9f22f4bb9793cd25950a1b38358f108c3de9bb2c19ad9321a4272b3d3 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,974   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.1-py2.py3-none-any.whl#sha256=bec63d4e6695019c464fead760b00b9d20e83efdf7490e1fff13a516a21aadb3 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,975   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0-py2.py3-none-any.whl#sha256=0214feaec9bb4c362b2461b50ad751b247a7ceadccf57cae7cf262b8a4df10ac (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,975   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev6-py2.py3-none-any.whl#sha256=10c00c2a7ced0c167418dd0dbf0af5bab4588d0f0025740e322621ea1c3c05df (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,976   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev5-py2.py3-none-any.whl#sha256=b7d04bcb8715d5f9597918b666b2ab96838d8f100d3ab8bb3a5b2d954401a82f (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,976   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev4-py2.py3-none-any.whl#sha256=b9c2a44ba7a71ee466b397ed348d401d8f3865ff82f51127f6dfe29aa4e40d45 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,977   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev3-py2.py3-none-any.whl#sha256=ccbafd174fc71bd4401c83e5bf37d84e9d04f0235515a54c96000bcd39601718 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,978   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev2-py2.py3-none-any.whl#sha256=e14147315dd322f53805711ba634bc6cf6b8205eabbf4c75d0e763dc4609a7a9 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,978   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev1-py2.py3-none-any.whl#sha256=564fa532511f56f8096c9a88ba2276ea999a2818f49f901bba0803d388a73efe (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,979   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-21.1.0.dev0-py2.py3-none-any.whl#sha256=c90fad8221d9dec650a2bbdae38da80e36bf6c3e14379ad4e629e3064f193135 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,979   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.1-py2.py3-none-any.whl#sha256=49efdde3e1812fd468d892ec9482f14582c4a7808a9f2a51729b0dcc6fb71534 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,980   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0-py2.py3-none-any.whl#sha256=345ffecd57588029147b5157b0208998837a91801db2fd07bd468323f62cff8d (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,981   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev2-py2.py3-none-any.whl#sha256=998397ad8197715132eef7e82e4e4b94461fbee62a59a7ded386fb68f6b28b91 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,981   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev1-py2.py3-none-any.whl#sha256=d37c148bb818e8ea85235cbffb29eaac409ea0bfaf925cd03236539cf43e98fe (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,982   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.9.0.dev0-py2.py3-none-any.whl#sha256=986efe8fe9ab9919d3758da577bdf0422b9bb5c6ad06e9ad50cf40700affb918 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,982   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0-py2.py3-none-any.whl#sha256=4c19a071c7810699ca7f55cb4f1e5b570c3f2aadf94eee4788b0aae6bffa5329 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,983   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0.dev2-py2.py3-none-any.whl#sha256=0b27d440a666a9c9a01a19e185d99d2ea1a155b787b406279c9febbdad9615fa (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,983   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.5.0.dev1-py2.py3-none-any.whl#sha256=c9befeae4659e88dae1b60eea48cfae03706afaf16610e7105bf6fbb0c9362bd (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,984   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev5-py2.py3-none-any.whl#sha256=07b2932888bc892f556721bca075c8af09f4bb395fcc33a3733d53868a183596 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,984   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev4-py2.py3-none-any.whl#sha256=1d8a6bb9e6104db4ea1cd468ccbf6a1d4e27c8b7c8e5a70c1ab09fed151c69b4 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,985   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev3-py2.py3-none-any.whl#sha256=4f37bcc38772266c1fe9eb830150eb8ab4ed7d027d3cd36c7615329c288f19e2 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,986   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev2-py2.py3-none-any.whl#sha256=31592fa5ca14dec20729f34ff000168d49d0248143fa3c9ab1efdf31339514d6 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,986   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev1-py2.py3-none-any.whl#sha256=f37d30adcac65b055e489fb0b02f69a7edd812f321eb1da44795b2bd1f2abc93 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,987   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-20.1.0.dev0-py2.py3-none-any.whl#sha256=f5d584c26cda61bce66239bcfe6b148ed1752585ebebdcf03cb423a252899e11 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,987   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.1-py2.py3-none-any.whl#sha256=d2026a5c374a2206158eb34518473e14ded7c8a7f80d35c743ad31e75c5552bb (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,988   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0-py2.py3-none-any.whl#sha256=b9ae70a1744abff6164cab3304cf279e8683944b8cf2d95c26f6df7dfe9eb4c5 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,989   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev5-py2.py3-none-any.whl#sha256=f869574a225f69e7b51f6dba165eec4a58fe6c76d45924aecd9cc44e6513ad77 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,989   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev4-py2.py3-none-any.whl#sha256=f8287860bf6f524db3bd2d9096b97595aecea1a1e321065d5e36d971f5cd7b79 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,990   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev3-py2.py3-none-any.whl#sha256=c11cefb2c969b6e74729ae125693e5bf5401218df9615d22a68b3a5d8ce68122 (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,990   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev2-py2.py3-none-any.whl#sha256=62e79b75dc27fa398c1e33a336b253d18de3fc94880fe567b3ee01fd081c6d5c (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,990   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev1-py2.py3-none-any.whl#sha256=7ff286949cb2c87a462ef1360b4ff58a3d0fc953dfde646f2b23bc9438d63ada (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,991   Skipping link: No binaries permitted for galaxy-tool-util: https://archive1.piwheels.org/simple/galaxy-tool-util/galaxy_tool_util-19.9.0.dev0-py3-none-any.whl#sha256=f3257799e554be8d31f640710ed8672994323cbfda020a3648775c6d156fad4a (from https://www.piwheels.org/simple/galaxy-tool-util/)
2026-03-09T19:07:35,992 Skipping link: not a file: https://www.piwheels.org/simple/galaxy-tool-util/
2026-03-09T19:07:35,992 Skipping link: not a file: https://pypi.org/simple/galaxy-tool-util/
2026-03-09T19:07:36,020 Given no hashes to check 1 links for project 'galaxy-tool-util': discarding no candidates
2026-03-09T19:07:36,040 Collecting galaxy-tool-util==25.1.2
2026-03-09T19:07:36,043   Created temporary directory: /tmp/pip-unpack-a942h08a
2026-03-09T19:07:36,255   Downloading galaxy_tool_util-25.1.2.tar.gz (477 kB)
2026-03-09T19:07:36,791   Added galaxy-tool-util==25.1.2 from https://files.pythonhosted.org/packages/09/a6/684e1b92b28cfb539d7223fe7137cedaf7a017b531c0e5fde1d7180a6790/galaxy_tool_util-25.1.2.tar.gz to build tracker '/tmp/pip-build-tracker-wf9tzj1c'
2026-03-09T19:07:36,794   Created temporary directory: /tmp/pip-build-env-6xud_j6z
2026-03-09T19:07:36,798   Installing build dependencies: started
2026-03-09T19:07:36,800   Running command pip subprocess to install build dependencies
2026-03-09T19:07:37,919   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-03-09T19:07:38,495   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-09T19:07:38,518   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-09T19:07:40,294   Collecting setuptools
2026-03-09T19:07:40,375     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-03-09T19:07:43,355   Installing collected packages: setuptools
2026-03-09T19:07:46,444   Successfully installed setuptools-82.0.1
2026-03-09T19:07:46,728   Installing build dependencies: finished with status 'done'
2026-03-09T19:07:46,735   Getting requirements to build wheel: started
2026-03-09T19:07:46,737   Running command Getting requirements to build wheel
2026-03-09T19:07:47,314   /tmp/pip-build-env-6xud_j6z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-09T19:07:47,314   !!

2026-03-09T19:07:47,315           ********************************************************************************
2026-03-09T19:07:47,315           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-09T19:07:47,316           License :: OSI Approved :: Academic Free License (AFL)

2026-03-09T19:07:47,317           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-09T19:07:47,317           ********************************************************************************

2026-03-09T19:07:47,319   !!
2026-03-09T19:07:47,319     self._finalize_license_expression()
2026-03-09T19:07:47,379   running egg_info
2026-03-09T19:07:47,386   writing galaxy_tool_util.egg-info/PKG-INFO
2026-03-09T19:07:47,394   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2026-03-09T19:07:47,397   writing entry points to galaxy_tool_util.egg-info/entry_points.txt
2026-03-09T19:07:47,399   writing requirements to galaxy_tool_util.egg-info/requires.txt
2026-03-09T19:07:47,401   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2026-03-09T19:07:47,459   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:47,472   reading manifest template 'MANIFEST.in'
2026-03-09T19:07:47,478   adding license file 'LICENSE'
2026-03-09T19:07:47,488   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:47,581   Getting requirements to build wheel: finished with status 'done'
2026-03-09T19:07:47,584   Created temporary directory: /tmp/pip-modern-metadata-r0bzav5w
2026-03-09T19:07:47,587   Preparing metadata (pyproject.toml): started
2026-03-09T19:07:47,588   Running command Preparing metadata (pyproject.toml)
2026-03-09T19:07:48,137   /tmp/pip-build-env-6xud_j6z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-09T19:07:48,138   !!

2026-03-09T19:07:48,139           ********************************************************************************
2026-03-09T19:07:48,140           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-09T19:07:48,141           License :: OSI Approved :: Academic Free License (AFL)

2026-03-09T19:07:48,142           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-09T19:07:48,143           ********************************************************************************

2026-03-09T19:07:48,144   !!
2026-03-09T19:07:48,145     self._finalize_license_expression()
2026-03-09T19:07:48,164   running dist_info
2026-03-09T19:07:48,175   creating /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info
2026-03-09T19:07:48,176   writing /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/PKG-INFO
2026-03-09T19:07:48,184   writing dependency_links to /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/dependency_links.txt
2026-03-09T19:07:48,186   writing entry points to /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/entry_points.txt
2026-03-09T19:07:48,189   writing requirements to /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/requires.txt
2026-03-09T19:07:48,190   writing top-level names to /tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/top_level.txt
2026-03-09T19:07:48,194   writing manifest file '/tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:48,456   reading manifest file '/tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:48,458   reading manifest template 'MANIFEST.in'
2026-03-09T19:07:48,463   adding license file 'LICENSE'
2026-03-09T19:07:48,471   writing manifest file '/tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:48,472   creating '/tmp/pip-modern-metadata-r0bzav5w/galaxy_tool_util-25.1.2.dist-info'
2026-03-09T19:07:48,600   Preparing metadata (pyproject.toml): finished with status 'done'
2026-03-09T19:07:48,607   Source in /tmp/pip-wheel-w8dqevwd/galaxy-tool-util_30ab51d97255416bbe364e70c32e334d has version 25.1.2, which satisfies requirement galaxy-tool-util==25.1.2 from https://files.pythonhosted.org/packages/09/a6/684e1b92b28cfb539d7223fe7137cedaf7a017b531c0e5fde1d7180a6790/galaxy_tool_util-25.1.2.tar.gz
2026-03-09T19:07:48,608   Removed galaxy-tool-util==25.1.2 from https://files.pythonhosted.org/packages/09/a6/684e1b92b28cfb539d7223fe7137cedaf7a017b531c0e5fde1d7180a6790/galaxy_tool_util-25.1.2.tar.gz from build tracker '/tmp/pip-build-tracker-wf9tzj1c'
2026-03-09T19:07:48,618 Created temporary directory: /tmp/pip-unpack-0tycltk4
2026-03-09T19:07:48,619 Building wheels for collected packages: galaxy-tool-util
2026-03-09T19:07:48,623   Created temporary directory: /tmp/pip-wheel-58iixoxr
2026-03-09T19:07:48,624   Destination directory: /tmp/pip-wheel-58iixoxr
2026-03-09T19:07:48,626   Building wheel for galaxy-tool-util (pyproject.toml): started
2026-03-09T19:07:48,627   Running command Building wheel for galaxy-tool-util (pyproject.toml)
2026-03-09T19:07:49,173   /tmp/pip-build-env-6xud_j6z/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-09T19:07:49,173   !!

2026-03-09T19:07:49,175           ********************************************************************************
2026-03-09T19:07:49,175           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-09T19:07:49,177           License :: OSI Approved :: Academic Free License (AFL)

2026-03-09T19:07:49,178           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-09T19:07:49,179           ********************************************************************************

2026-03-09T19:07:49,180   !!
2026-03-09T19:07:49,180     self._finalize_license_expression()
2026-03-09T19:07:49,198   running bdist_wheel
2026-03-09T19:07:49,225   running build
2026-03-09T19:07:49,225   running build_py
2026-03-09T19:07:49,234   creating build/lib/galaxy
2026-03-09T19:07:49,236   copying galaxy/__init__.py -> build/lib/galaxy
2026-03-09T19:07:49,238   creating build/lib/galaxy/tool_util
2026-03-09T19:07:49,240   copying galaxy/tool_util/version.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,242   copying galaxy/tool_util/validate_test_format.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,244   copying galaxy/tool_util/loader.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,246   copying galaxy/tool_util/provided_metadata.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,248   copying galaxy/tool_util/fetcher.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,250   copying galaxy/tool_util/__init__.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,252   copying galaxy/tool_util/output_checker.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,254   copying galaxy/tool_util/lint.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,257   copying galaxy/tool_util/edam_util.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,259   copying galaxy/tool_util/model_factory.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,260   copying galaxy/tool_util/loader_directory.py -> build/lib/galaxy/tool_util
2026-03-09T19:07:49,263   creating build/lib/galaxy/tool_util/upgrade
2026-03-09T19:07:49,264   copying galaxy/tool_util/upgrade/__init__.py -> build/lib/galaxy/tool_util/upgrade
2026-03-09T19:07:49,267   copying galaxy/tool_util/upgrade/script.py -> build/lib/galaxy/tool_util/upgrade
2026-03-09T19:07:49,269   creating build/lib/galaxy/tool_util/biotools
2026-03-09T19:07:49,270   copying galaxy/tool_util/biotools/__init__.py -> build/lib/galaxy/tool_util/biotools
2026-03-09T19:07:49,272   copying galaxy/tool_util/biotools/source.py -> build/lib/galaxy/tool_util/biotools
2026-03-09T19:07:49,274   copying galaxy/tool_util/biotools/interface.py -> build/lib/galaxy/tool_util/biotools
2026-03-09T19:07:49,276   creating build/lib/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,277   copying galaxy/tool_util/unittest_utils/interactor.py -> build/lib/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,279   copying galaxy/tool_util/unittest_utils/sample_data.py -> build/lib/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,280   copying galaxy/tool_util/unittest_utils/__init__.py -> build/lib/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,282   copying galaxy/tool_util/unittest_utils/parameters.py -> build/lib/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,285   creating build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,286   copying galaxy/tool_util/deps/containers.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,288   copying galaxy/tool_util/deps/conda_compat.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,290   copying galaxy/tool_util/deps/conda_util.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,293   copying galaxy/tool_util/deps/installable.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,295   copying galaxy/tool_util/deps/dockerfiles.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,296   copying galaxy/tool_util/deps/dependencies.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,299   copying galaxy/tool_util/deps/requirements.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,302   copying galaxy/tool_util/deps/__init__.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,305   copying galaxy/tool_util/deps/docker_util.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,307   copying galaxy/tool_util/deps/views.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,309   copying galaxy/tool_util/deps/commands.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,311   copying galaxy/tool_util/deps/container_volumes.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,313   copying galaxy/tool_util/deps/brew_util.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,315   copying galaxy/tool_util/deps/singularity_util.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,317   copying galaxy/tool_util/deps/container_classes.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,320   copying galaxy/tool_util/deps/brew_exts.py -> build/lib/galaxy/tool_util/deps
2026-03-09T19:07:49,324   creating build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,325   copying galaxy/tool_util/ontologies/__init__.py -> build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,326   copying galaxy/tool_util/ontologies/ontology_data.py -> build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,329   creating build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,330   copying galaxy/tool_util/parameters/convert.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,332   copying galaxy/tool_util/parameters/__init__.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,335   copying galaxy/tool_util/parameters/json.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,337   copying galaxy/tool_util/parameters/factory.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,341   copying galaxy/tool_util/parameters/model_validation.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,342   copying galaxy/tool_util/parameters/visitor.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,345   copying galaxy/tool_util/parameters/state.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,348   copying galaxy/tool_util/parameters/case.py -> build/lib/galaxy/tool_util/parameters
2026-03-09T19:07:49,351   creating build/lib/galaxy/tool_util/data
2026-03-09T19:07:49,352   copying galaxy/tool_util/data/_schema.py -> build/lib/galaxy/tool_util/data
2026-03-09T19:07:49,354   copying galaxy/tool_util/data/__init__.py -> build/lib/galaxy/tool_util/data
2026-03-09T19:07:49,357   creating build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,358   copying galaxy/tool_util/verify/interactor.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,362   copying galaxy/tool_util/verify/wait.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,364   copying galaxy/tool_util/verify/test_data.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,366   copying galaxy/tool_util/verify/__init__.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,369   copying galaxy/tool_util/verify/script.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,371   copying galaxy/tool_util/verify/codegen.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,374   copying galaxy/tool_util/verify/parse.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,377   copying galaxy/tool_util/verify/_types.py -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,379   creating build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,380   copying galaxy/tool_util/toolbox/parser.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,383   copying galaxy/tool_util/toolbox/panel.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,385   copying galaxy/tool_util/toolbox/watcher.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,388   copying galaxy/tool_util/toolbox/base.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,391   copying galaxy/tool_util/toolbox/__init__.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,393   copying galaxy/tool_util/toolbox/integrated_panel.py -> build/lib/galaxy/tool_util/toolbox
2026-03-09T19:07:49,396   creating build/lib/galaxy/tool_util/locations
2026-03-09T19:07:49,397   copying galaxy/tool_util/locations/file.py -> build/lib/galaxy/tool_util/locations
2026-03-09T19:07:49,399   copying galaxy/tool_util/locations/http.py -> build/lib/galaxy/tool_util/locations
2026-03-09T19:07:49,401   copying galaxy/tool_util/locations/__init__.py -> build/lib/galaxy/tool_util/locations
2026-03-09T19:07:49,403   copying galaxy/tool_util/locations/dockstore.py -> build/lib/galaxy/tool_util/locations
2026-03-09T19:07:49,406   creating build/lib/galaxy/tool_util/client
2026-03-09T19:07:49,407   copying galaxy/tool_util/client/__init__.py -> build/lib/galaxy/tool_util/client
2026-03-09T19:07:49,408   copying galaxy/tool_util/client/staging.py -> build/lib/galaxy/tool_util/client
2026-03-09T19:07:49,411   copying galaxy/tool_util/client/landing.py -> build/lib/galaxy/tool_util/client
2026-03-09T19:07:49,414   creating build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,415   copying galaxy/tool_util/parser/parameter_validators.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,417   copying galaxy/tool_util/parser/cwl.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,420   copying galaxy/tool_util/parser/xml.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,424   copying galaxy/tool_util/parser/output_collection_def.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,427   copying galaxy/tool_util/parser/__init__.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,429   copying galaxy/tool_util/parser/util.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,431   copying galaxy/tool_util/parser/factory.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,434   copying galaxy/tool_util/parser/output_objects.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,437   copying galaxy/tool_util/parser/stdio.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,439   copying galaxy/tool_util/parser/output_actions.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,443   copying galaxy/tool_util/parser/yaml.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,446   copying galaxy/tool_util/parser/interface.py -> build/lib/galaxy/tool_util/parser
2026-03-09T19:07:49,449   creating build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,451   copying galaxy/tool_util/cwl/cwltool_deps.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,453   copying galaxy/tool_util/cwl/parser.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,457   copying galaxy/tool_util/cwl/__init__.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,459   copying galaxy/tool_util/cwl/util.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,463   copying galaxy/tool_util/cwl/representation.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,466   copying galaxy/tool_util/cwl/runtime_actions.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,469   copying galaxy/tool_util/cwl/runnable.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,471   copying galaxy/tool_util/cwl/schema.py -> build/lib/galaxy/tool_util/cwl
2026-03-09T19:07:49,474   creating build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,475   copying galaxy/tool_util/linters/tests.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,479   copying galaxy/tool_util/linters/xsd.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,481   copying galaxy/tool_util/linters/citations.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,484   copying galaxy/tool_util/linters/cwl.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,486   copying galaxy/tool_util/linters/_util.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,488   copying galaxy/tool_util/linters/__init__.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,490   copying galaxy/tool_util/linters/xml_order.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,493   copying galaxy/tool_util/linters/output.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,496   copying galaxy/tool_util/linters/general.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,499   copying galaxy/tool_util/linters/help.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,501   copying galaxy/tool_util/linters/inputs.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,505   copying galaxy/tool_util/linters/command.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,508   copying galaxy/tool_util/linters/stdio.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,510   copying galaxy/tool_util/linters/datatypes.py -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,513   creating build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,514   copying galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,517   copying galaxy/tool_util/deps/resolvers/modules.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,520   copying galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,522   copying galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,525   copying galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,527   copying galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,530   copying galaxy/tool_util/deps/resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,532   copying galaxy/tool_util/deps/resolvers/conda.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,535   copying galaxy/tool_util/deps/resolvers/lmod.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,538   copying galaxy/tool_util/deps/resolvers/homebrew.py -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,541   creating build/lib/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,542   copying galaxy/tool_util/deps/container_resolvers/__init__.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,544   copying galaxy/tool_util/deps/container_resolvers/test.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,546   copying galaxy/tool_util/deps/container_resolvers/mulled.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,550   copying galaxy/tool_util/deps/container_resolvers/explicit.py -> build/lib/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,553   creating build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,554   copying galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,557   copying galaxy/tool_util/deps/mulled/get_tests.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,560   copying galaxy/tool_util/deps/mulled/__init__.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,562   copying galaxy/tool_util/deps/mulled/mulled_hash.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,564   copying galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,567   copying galaxy/tool_util/deps/mulled/util.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,570   copying galaxy/tool_util/deps/mulled/mulled_list.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,573   copying galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,575   copying galaxy/tool_util/deps/mulled/mulled_build.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,578   copying galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,580   copying galaxy/tool_util/deps/mulled/mulled_search.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,584   copying galaxy/tool_util/deps/mulled/_cli.py -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,587   creating build/lib/galaxy/tool_util/parameters/scripts
2026-03-09T19:07:49,588   copying galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/lib/galaxy/tool_util/parameters/scripts
2026-03-09T19:07:49,591   copying galaxy/tool_util/parameters/scripts/__init__.py -> build/lib/galaxy/tool_util/parameters/scripts
2026-03-09T19:07:49,593   creating build/lib/galaxy/tool_util/data/bundles
2026-03-09T19:07:49,594   copying galaxy/tool_util/data/bundles/models.py -> build/lib/galaxy/tool_util/data/bundles
2026-03-09T19:07:49,597   copying galaxy/tool_util/data/bundles/__init__.py -> build/lib/galaxy/tool_util/data/bundles
2026-03-09T19:07:49,600   creating build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,601   copying galaxy/tool_util/verify/asserts/size.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,604   copying galaxy/tool_util/verify/asserts/hdf5.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,606   copying galaxy/tool_util/verify/asserts/tabular.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,608   copying galaxy/tool_util/verify/asserts/_util.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,610   copying galaxy/tool_util/verify/asserts/xml.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,613   copying galaxy/tool_util/verify/asserts/__init__.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,616   copying galaxy/tool_util/verify/asserts/image.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,619   copying galaxy/tool_util/verify/asserts/text.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,622   copying galaxy/tool_util/verify/asserts/json.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,624   copying galaxy/tool_util/verify/asserts/archive.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,627   copying galaxy/tool_util/verify/asserts/_types.py -> build/lib/galaxy/tool_util/verify/asserts
2026-03-09T19:07:49,630   creating build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,631   copying galaxy/tool_util/toolbox/views/edam.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,633   copying galaxy/tool_util/toolbox/views/__init__.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,636   copying galaxy/tool_util/toolbox/views/sources.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,638   copying galaxy/tool_util/toolbox/views/static.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,641   copying galaxy/tool_util/toolbox/views/definitions.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,643   copying galaxy/tool_util/toolbox/views/interface.py -> build/lib/galaxy/tool_util/toolbox/views
2026-03-09T19:07:49,646   creating build/lib/galaxy/tool_util/toolbox/filters
2026-03-09T19:07:49,647   copying galaxy/tool_util/toolbox/filters/__init__.py -> build/lib/galaxy/tool_util/toolbox/filters
2026-03-09T19:07:49,650   creating build/lib/galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:49,651   copying galaxy/tool_util/toolbox/lineages/__init__.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:49,654   copying galaxy/tool_util/toolbox/lineages/factory.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:49,656   copying galaxy/tool_util/toolbox/lineages/interface.py -> build/lib/galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:49,658   running egg_info
2026-03-09T19:07:49,668   writing galaxy_tool_util.egg-info/PKG-INFO
2026-03-09T19:07:49,676   writing dependency_links to galaxy_tool_util.egg-info/dependency_links.txt
2026-03-09T19:07:49,678   writing entry points to galaxy_tool_util.egg-info/entry_points.txt
2026-03-09T19:07:49,681   writing requirements to galaxy_tool_util.egg-info/requires.txt
2026-03-09T19:07:49,682   writing top-level names to galaxy_tool_util.egg-info/top_level.txt
2026-03-09T19:07:49,715   reading manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:49,726   reading manifest template 'MANIFEST.in'
2026-03-09T19:07:49,732   adding license file 'LICENSE'
2026-03-09T19:07:49,742   writing manifest file 'galaxy_tool_util.egg-info/SOURCES.txt'
2026-03-09T19:07:49,747   /tmp/pip-build-env-6xud_j6z/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'galaxy.tool_util.xsd' is absent from the `packages` configuration.
2026-03-09T19:07:49,747   !!

2026-03-09T19:07:49,749           ********************************************************************************
2026-03-09T19:07:49,749           ############################
2026-03-09T19:07:49,750           # Package would be ignored #
2026-03-09T19:07:49,750           ############################
2026-03-09T19:07:49,751           Python recognizes 'galaxy.tool_util.xsd' as an importable package[^1],
2026-03-09T19:07:49,751           but it is absent from setuptools' `packages` configuration.

2026-03-09T19:07:49,753           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-09T19:07:49,753           package, please make sure that 'galaxy.tool_util.xsd' is explicitly added
2026-03-09T19:07:49,754           to the `packages` configuration field.

2026-03-09T19:07:49,755           Alternatively, you can also rely on setuptools' discovery methods
2026-03-09T19:07:49,755           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-09T19:07:49,756           instead of `find_packages(...)`/`find:`).

2026-03-09T19:07:49,757           You can read more about "package discovery" on setuptools documentation page:

2026-03-09T19:07:49,758           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-09T19:07:49,760           If you don't want 'galaxy.tool_util.xsd' to be distributed and are
2026-03-09T19:07:49,760           already explicitly excluding 'galaxy.tool_util.xsd' via
2026-03-09T19:07:49,761           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-09T19:07:49,762           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-09T19:07:49,762           combination with a more fine grained `package-data` configuration.

2026-03-09T19:07:49,763           You can read more about "package data files" on setuptools documentation page:

2026-03-09T19:07:49,764           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-09T19:07:49,765           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-09T19:07:49,766                 even if it does not contain any `.py` files.
2026-03-09T19:07:49,766                 On the other hand, currently there is no concept of package data
2026-03-09T19:07:49,767                 directory, all directories are treated like packages.
2026-03-09T19:07:49,767           ********************************************************************************

2026-03-09T19:07:49,768   !!
2026-03-09T19:07:49,769     check.warn(importable)
2026-03-09T19:07:49,772   copying galaxy/py.typed -> build/lib/galaxy
2026-03-09T19:07:49,774   creating build/lib/galaxy/tool_util/xsd
2026-03-09T19:07:49,775   copying galaxy/tool_util/xsd/LICENSE -> build/lib/galaxy/tool_util/xsd
2026-03-09T19:07:49,778   copying galaxy/tool_util/xsd/README.md -> build/lib/galaxy/tool_util/xsd
2026-03-09T19:07:49,780   copying galaxy/tool_util/xsd/galaxy.jxb -> build/lib/galaxy/tool_util/xsd
2026-03-09T19:07:49,782   copying galaxy/tool_util/xsd/galaxy.xsd -> build/lib/galaxy/tool_util/xsd
2026-03-09T19:07:49,804   copying galaxy/tool_util/upgrade/upgrade_codes.json -> build/lib/galaxy/tool_util/upgrade
2026-03-09T19:07:49,807   copying galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,810   copying galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,813   copying galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/lib/galaxy/tool_util/ontologies
2026-03-09T19:07:49,815   copying galaxy/tool_util/verify/test_config.sample.yml -> build/lib/galaxy/tool_util/verify
2026-03-09T19:07:49,817   copying galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/lib/galaxy/tool_util/linters
2026-03-09T19:07:49,823   copying galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/lib/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,826   copying galaxy/tool_util/deps/mulled/invfile.lua -> build/lib/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,828   copying galaxy/tool_util/toolbox/filters/examples.py.sample -> build/lib/galaxy/tool_util/toolbox/filters
2026-03-09T19:07:49,858   installing to build/bdist.linux-armv7l/wheel
2026-03-09T19:07:49,859   running install
2026-03-09T19:07:49,882   running install_lib
2026-03-09T19:07:49,890   creating build/bdist.linux-armv7l/wheel
2026-03-09T19:07:49,892   creating build/bdist.linux-armv7l/wheel/galaxy
2026-03-09T19:07:49,894   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util
2026-03-09T19:07:49,895   copying build/lib/galaxy/tool_util/version.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:49,898   copying build/lib/galaxy/tool_util/validate_test_format.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:49,900   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/upgrade
2026-03-09T19:07:49,901   copying build/lib/galaxy/tool_util/upgrade/upgrade_codes.json -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-03-09T19:07:49,904   copying build/lib/galaxy/tool_util/upgrade/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-03-09T19:07:49,906   copying build/lib/galaxy/tool_util/upgrade/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/upgrade
2026-03-09T19:07:49,909   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/biotools
2026-03-09T19:07:49,910   copying build/lib/galaxy/tool_util/biotools/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-03-09T19:07:49,912   copying build/lib/galaxy/tool_util/biotools/source.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-03-09T19:07:49,914   copying build/lib/galaxy/tool_util/biotools/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/biotools
2026-03-09T19:07:49,915   copying build/lib/galaxy/tool_util/loader.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:49,918   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,918   copying build/lib/galaxy/tool_util/unittest_utils/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,921   copying build/lib/galaxy/tool_util/unittest_utils/sample_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,922   copying build/lib/galaxy/tool_util/unittest_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,924   copying build/lib/galaxy/tool_util/unittest_utils/parameters.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/unittest_utils
2026-03-09T19:07:49,927   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps
2026-03-09T19:07:49,927   copying build/lib/galaxy/tool_util/deps/containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,931   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,932   copying build/lib/galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,934   copying build/lib/galaxy/tool_util/deps/resolvers/modules.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,937   copying build/lib/galaxy/tool_util/deps/resolvers/default_conda_mapping.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,938   copying build/lib/galaxy/tool_util/deps/resolvers/tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,940   copying build/lib/galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,943   copying build/lib/galaxy/tool_util/deps/resolvers/galaxy_packages.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,945   copying build/lib/galaxy/tool_util/deps/resolvers/resolver_mixins.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,947   copying build/lib/galaxy/tool_util/deps/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,949   copying build/lib/galaxy/tool_util/deps/resolvers/conda.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,952   copying build/lib/galaxy/tool_util/deps/resolvers/lmod.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,954   copying build/lib/galaxy/tool_util/deps/resolvers/homebrew.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/resolvers
2026-03-09T19:07:49,956   copying build/lib/galaxy/tool_util/deps/conda_compat.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,958   copying build/lib/galaxy/tool_util/deps/conda_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,961   copying build/lib/galaxy/tool_util/deps/installable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,962   copying build/lib/galaxy/tool_util/deps/dockerfiles.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,964   copying build/lib/galaxy/tool_util/deps/dependencies.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,967   copying build/lib/galaxy/tool_util/deps/requirements.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,969   copying build/lib/galaxy/tool_util/deps/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,972   copying build/lib/galaxy/tool_util/deps/docker_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,975   copying build/lib/galaxy/tool_util/deps/views.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,977   copying build/lib/galaxy/tool_util/deps/commands.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,979   copying build/lib/galaxy/tool_util/deps/container_volumes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,981   copying build/lib/galaxy/tool_util/deps/brew_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,982   copying build/lib/galaxy/tool_util/deps/singularity_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,984   copying build/lib/galaxy/tool_util/deps/container_classes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:49,988   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,989   copying build/lib/galaxy/tool_util/deps/container_resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,991   copying build/lib/galaxy/tool_util/deps/container_resolvers/test.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,993   copying build/lib/galaxy/tool_util/deps/container_resolvers/mulled.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,995   copying build/lib/galaxy/tool_util/deps/container_resolvers/explicit.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/container_resolvers
2026-03-09T19:07:49,998   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/deps/mulled
2026-03-09T19:07:49,999   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_channel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,001   copying build/lib/galaxy/tool_util/deps/mulled/get_tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,004   copying build/lib/galaxy/tool_util/deps/mulled/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,005   copying build/lib/galaxy/tool_util/deps/mulled/mulled_hash.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,007   copying build/lib/galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,009   copying build/lib/galaxy/tool_util/deps/mulled/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,012   copying build/lib/galaxy/tool_util/deps/mulled/mulled_list.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,014   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_tool.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,016   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,019   copying build/lib/galaxy/tool_util/deps/mulled/mulled_build_files.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,022   copying build/lib/galaxy/tool_util/deps/mulled/mulled_search.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,024   copying build/lib/galaxy/tool_util/deps/mulled/invfile.lua -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,026   copying build/lib/galaxy/tool_util/deps/mulled/_cli.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps/mulled
2026-03-09T19:07:50,028   copying build/lib/galaxy/tool_util/deps/brew_exts.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/deps
2026-03-09T19:07:50,031   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/ontologies
2026-03-09T19:07:50,032   copying build/lib/galaxy/tool_util/ontologies/edam_topic_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-03-09T19:07:50,034   copying build/lib/galaxy/tool_util/ontologies/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-03-09T19:07:50,035   copying build/lib/galaxy/tool_util/ontologies/ontology_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-03-09T19:07:50,038   copying build/lib/galaxy/tool_util/ontologies/biotools_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-03-09T19:07:50,041   copying build/lib/galaxy/tool_util/ontologies/edam_operation_mappings.tsv -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/ontologies
2026-03-09T19:07:50,042   copying build/lib/galaxy/tool_util/provided_metadata.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,044   copying build/lib/galaxy/tool_util/fetcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,047   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/xsd
2026-03-09T19:07:50,048   copying build/lib/galaxy/tool_util/xsd/galaxy.xsd -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-03-09T19:07:50,068   copying build/lib/galaxy/tool_util/xsd/galaxy.jxb -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-03-09T19:07:50,069   copying build/lib/galaxy/tool_util/xsd/README.md -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-03-09T19:07:50,071   copying build/lib/galaxy/tool_util/xsd/LICENSE -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/xsd
2026-03-09T19:07:50,074   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters
2026-03-09T19:07:50,075   copying build/lib/galaxy/tool_util/parameters/convert.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,078   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parameters/scripts
2026-03-09T19:07:50,079   copying build/lib/galaxy/tool_util/parameters/scripts/validate_test_cases.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts
2026-03-09T19:07:50,081   copying build/lib/galaxy/tool_util/parameters/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters/scripts
2026-03-09T19:07:50,083   copying build/lib/galaxy/tool_util/parameters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,085   copying build/lib/galaxy/tool_util/parameters/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,087   copying build/lib/galaxy/tool_util/parameters/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,089   copying build/lib/galaxy/tool_util/parameters/model_validation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,091   copying build/lib/galaxy/tool_util/parameters/visitor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,093   copying build/lib/galaxy/tool_util/parameters/state.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,096   copying build/lib/galaxy/tool_util/parameters/case.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parameters
2026-03-09T19:07:50,098   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data
2026-03-09T19:07:50,100   copying build/lib/galaxy/tool_util/data/_schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data
2026-03-09T19:07:50,102   copying build/lib/galaxy/tool_util/data/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data
2026-03-09T19:07:50,106   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/data/bundles
2026-03-09T19:07:50,107   copying build/lib/galaxy/tool_util/data/bundles/models.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles
2026-03-09T19:07:50,109   copying build/lib/galaxy/tool_util/data/bundles/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/data/bundles
2026-03-09T19:07:50,111   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify
2026-03-09T19:07:50,112   copying build/lib/galaxy/tool_util/verify/interactor.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,117   copying build/lib/galaxy/tool_util/verify/wait.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,119   copying build/lib/galaxy/tool_util/verify/test_data.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,121   copying build/lib/galaxy/tool_util/verify/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,125   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,126   copying build/lib/galaxy/tool_util/verify/asserts/size.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,128   copying build/lib/galaxy/tool_util/verify/asserts/hdf5.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,131   copying build/lib/galaxy/tool_util/verify/asserts/tabular.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,133   copying build/lib/galaxy/tool_util/verify/asserts/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,135   copying build/lib/galaxy/tool_util/verify/asserts/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,138   copying build/lib/galaxy/tool_util/verify/asserts/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,140   copying build/lib/galaxy/tool_util/verify/asserts/image.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,143   copying build/lib/galaxy/tool_util/verify/asserts/text.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,145   copying build/lib/galaxy/tool_util/verify/asserts/json.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,147   copying build/lib/galaxy/tool_util/verify/asserts/archive.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,149   copying build/lib/galaxy/tool_util/verify/asserts/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify/asserts
2026-03-09T19:07:50,151   copying build/lib/galaxy/tool_util/verify/script.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,154   copying build/lib/galaxy/tool_util/verify/codegen.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,157   copying build/lib/galaxy/tool_util/verify/parse.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,159   copying build/lib/galaxy/tool_util/verify/test_config.sample.yml -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,161   copying build/lib/galaxy/tool_util/verify/_types.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/verify
2026-03-09T19:07:50,163   copying build/lib/galaxy/tool_util/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,166   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox
2026-03-09T19:07:50,167   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,169   copying build/lib/galaxy/tool_util/toolbox/views/edam.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,171   copying build/lib/galaxy/tool_util/toolbox/views/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,173   copying build/lib/galaxy/tool_util/toolbox/views/sources.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,175   copying build/lib/galaxy/tool_util/toolbox/views/static.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,178   copying build/lib/galaxy/tool_util/toolbox/views/definitions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,181   copying build/lib/galaxy/tool_util/toolbox/views/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/views
2026-03-09T19:07:50,183   copying build/lib/galaxy/tool_util/toolbox/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,185   copying build/lib/galaxy/tool_util/toolbox/panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,188   copying build/lib/galaxy/tool_util/toolbox/watcher.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,191   copying build/lib/galaxy/tool_util/toolbox/base.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,197   copying build/lib/galaxy/tool_util/toolbox/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,199   copying build/lib/galaxy/tool_util/toolbox/integrated_panel.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox
2026-03-09T19:07:50,203   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/filters
2026-03-09T19:07:50,204   copying build/lib/galaxy/tool_util/toolbox/filters/examples.py.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters
2026-03-09T19:07:50,207   copying build/lib/galaxy/tool_util/toolbox/filters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/filters
2026-03-09T19:07:50,210   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:50,211   copying build/lib/galaxy/tool_util/toolbox/lineages/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:50,214   copying build/lib/galaxy/tool_util/toolbox/lineages/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:50,216   copying build/lib/galaxy/tool_util/toolbox/lineages/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/toolbox/lineages
2026-03-09T19:07:50,218   copying build/lib/galaxy/tool_util/output_checker.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,221   copying build/lib/galaxy/tool_util/lint.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,224   copying build/lib/galaxy/tool_util/edam_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,227   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/locations
2026-03-09T19:07:50,228   copying build/lib/galaxy/tool_util/locations/file.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-03-09T19:07:50,231   copying build/lib/galaxy/tool_util/locations/http.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-03-09T19:07:50,233   copying build/lib/galaxy/tool_util/locations/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-03-09T19:07:50,235   copying build/lib/galaxy/tool_util/locations/dockstore.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/locations
2026-03-09T19:07:50,238   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/client
2026-03-09T19:07:50,239   copying build/lib/galaxy/tool_util/client/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-03-09T19:07:50,241   copying build/lib/galaxy/tool_util/client/staging.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-03-09T19:07:50,244   copying build/lib/galaxy/tool_util/client/landing.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/client
2026-03-09T19:07:50,248   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/parser
2026-03-09T19:07:50,249   copying build/lib/galaxy/tool_util/parser/parameter_validators.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,252   copying build/lib/galaxy/tool_util/parser/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,255   copying build/lib/galaxy/tool_util/parser/xml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,262   copying build/lib/galaxy/tool_util/parser/output_collection_def.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,265   copying build/lib/galaxy/tool_util/parser/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,268   copying build/lib/galaxy/tool_util/parser/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,270   copying build/lib/galaxy/tool_util/parser/factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,273   copying build/lib/galaxy/tool_util/parser/output_objects.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,277   copying build/lib/galaxy/tool_util/parser/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,280   copying build/lib/galaxy/tool_util/parser/output_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,283   copying build/lib/galaxy/tool_util/parser/yaml.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,285   copying build/lib/galaxy/tool_util/parser/interface.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/parser
2026-03-09T19:07:50,288   copying build/lib/galaxy/tool_util/model_factory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,291   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/cwl
2026-03-09T19:07:50,292   copying build/lib/galaxy/tool_util/cwl/cwltool_deps.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,294   copying build/lib/galaxy/tool_util/cwl/parser.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,298   copying build/lib/galaxy/tool_util/cwl/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,299   copying build/lib/galaxy/tool_util/cwl/util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,302   copying build/lib/galaxy/tool_util/cwl/representation.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,305   copying build/lib/galaxy/tool_util/cwl/runtime_actions.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,307   copying build/lib/galaxy/tool_util/cwl/runnable.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,309   copying build/lib/galaxy/tool_util/cwl/schema.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/cwl
2026-03-09T19:07:50,311   copying build/lib/galaxy/tool_util/loader_directory.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util
2026-03-09T19:07:50,314   creating build/bdist.linux-armv7l/wheel/galaxy/tool_util/linters
2026-03-09T19:07:50,315   copying build/lib/galaxy/tool_util/linters/tests.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,318   copying build/lib/galaxy/tool_util/linters/xsd.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,320   copying build/lib/galaxy/tool_util/linters/citations.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,322   copying build/lib/galaxy/tool_util/linters/cwl.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,324   copying build/lib/galaxy/tool_util/linters/_util.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,326   copying build/lib/galaxy/tool_util/linters/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,328   copying build/lib/galaxy/tool_util/linters/xml_order.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,330   copying build/lib/galaxy/tool_util/linters/output.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,332   copying build/lib/galaxy/tool_util/linters/general.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,335   copying build/lib/galaxy/tool_util/linters/help.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,336   copying build/lib/galaxy/tool_util/linters/inputs.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,340   copying build/lib/galaxy/tool_util/linters/command.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,341   copying build/lib/galaxy/tool_util/linters/stdio.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,343   copying build/lib/galaxy/tool_util/linters/datatypes_conf.xml.sample -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,348   copying build/lib/galaxy/tool_util/linters/datatypes.py -> build/bdist.linux-armv7l/wheel/./galaxy/tool_util/linters
2026-03-09T19:07:50,349   copying build/lib/galaxy/py.typed -> build/bdist.linux-armv7l/wheel/./galaxy
2026-03-09T19:07:50,351   copying build/lib/galaxy/__init__.py -> build/bdist.linux-armv7l/wheel/./galaxy
2026-03-09T19:07:50,353   running install_egg_info
2026-03-09T19:07:50,365   Copying galaxy_tool_util.egg-info to build/bdist.linux-armv7l/wheel/./galaxy_tool_util-25.1.2-py3.11.egg-info
2026-03-09T19:07:50,379   running install_scripts
2026-03-09T19:07:50,393   creating build/bdist.linux-armv7l/wheel/galaxy_tool_util-25.1.2.dist-info/WHEEL
2026-03-09T19:07:50,396   creating '/tmp/pip-wheel-58iixoxr/.tmp-q5srisev/galaxy_tool_util-25.1.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-09T19:07:50,398   adding 'galaxy/__init__.py'
2026-03-09T19:07:50,399   adding 'galaxy/py.typed'
2026-03-09T19:07:50,401   adding 'galaxy/tool_util/__init__.py'
2026-03-09T19:07:50,403   adding 'galaxy/tool_util/edam_util.py'
2026-03-09T19:07:50,404   adding 'galaxy/tool_util/fetcher.py'
2026-03-09T19:07:50,407   adding 'galaxy/tool_util/lint.py'
2026-03-09T19:07:50,408   adding 'galaxy/tool_util/loader.py'
2026-03-09T19:07:50,410   adding 'galaxy/tool_util/loader_directory.py'
2026-03-09T19:07:50,411   adding 'galaxy/tool_util/model_factory.py'
2026-03-09T19:07:50,413   adding 'galaxy/tool_util/output_checker.py'
2026-03-09T19:07:50,415   adding 'galaxy/tool_util/provided_metadata.py'
2026-03-09T19:07:50,416   adding 'galaxy/tool_util/validate_test_format.py'
2026-03-09T19:07:50,418   adding 'galaxy/tool_util/version.py'
2026-03-09T19:07:50,420   adding 'galaxy/tool_util/biotools/__init__.py'
2026-03-09T19:07:50,421   adding 'galaxy/tool_util/biotools/interface.py'
2026-03-09T19:07:50,422   adding 'galaxy/tool_util/biotools/source.py'
2026-03-09T19:07:50,424   adding 'galaxy/tool_util/client/__init__.py'
2026-03-09T19:07:50,426   adding 'galaxy/tool_util/client/landing.py'
2026-03-09T19:07:50,428   adding 'galaxy/tool_util/client/staging.py'
2026-03-09T19:07:50,430   adding 'galaxy/tool_util/cwl/__init__.py'
2026-03-09T19:07:50,431   adding 'galaxy/tool_util/cwl/cwltool_deps.py'
2026-03-09T19:07:50,437   adding 'galaxy/tool_util/cwl/parser.py'
2026-03-09T19:07:50,440   adding 'galaxy/tool_util/cwl/representation.py'
2026-03-09T19:07:50,441   adding 'galaxy/tool_util/cwl/runnable.py'
2026-03-09T19:07:50,443   adding 'galaxy/tool_util/cwl/runtime_actions.py'
2026-03-09T19:07:50,444   adding 'galaxy/tool_util/cwl/schema.py'
2026-03-09T19:07:50,448   adding 'galaxy/tool_util/cwl/util.py'
2026-03-09T19:07:50,456   adding 'galaxy/tool_util/data/__init__.py'
2026-03-09T19:07:50,457   adding 'galaxy/tool_util/data/_schema.py'
2026-03-09T19:07:50,459   adding 'galaxy/tool_util/data/bundles/__init__.py'
2026-03-09T19:07:50,461   adding 'galaxy/tool_util/data/bundles/models.py'
2026-03-09T19:07:50,465   adding 'galaxy/tool_util/deps/__init__.py'
2026-03-09T19:07:50,467   adding 'galaxy/tool_util/deps/brew_exts.py'
2026-03-09T19:07:50,468   adding 'galaxy/tool_util/deps/brew_util.py'
2026-03-09T19:07:50,470   adding 'galaxy/tool_util/deps/commands.py'
2026-03-09T19:07:50,471   adding 'galaxy/tool_util/deps/conda_compat.py'
2026-03-09T19:07:50,474   adding 'galaxy/tool_util/deps/conda_util.py'
2026-03-09T19:07:50,477   adding 'galaxy/tool_util/deps/container_classes.py'
2026-03-09T19:07:50,479   adding 'galaxy/tool_util/deps/container_volumes.py'
2026-03-09T19:07:50,481   adding 'galaxy/tool_util/deps/containers.py'
2026-03-09T19:07:50,483   adding 'galaxy/tool_util/deps/dependencies.py'
2026-03-09T19:07:50,485   adding 'galaxy/tool_util/deps/docker_util.py'
2026-03-09T19:07:50,486   adding 'galaxy/tool_util/deps/dockerfiles.py'
2026-03-09T19:07:50,488   adding 'galaxy/tool_util/deps/installable.py'
2026-03-09T19:07:50,490   adding 'galaxy/tool_util/deps/requirements.py'
2026-03-09T19:07:50,492   adding 'galaxy/tool_util/deps/singularity_util.py'
2026-03-09T19:07:50,494   adding 'galaxy/tool_util/deps/views.py'
2026-03-09T19:07:50,496   adding 'galaxy/tool_util/deps/container_resolvers/__init__.py'
2026-03-09T19:07:50,498   adding 'galaxy/tool_util/deps/container_resolvers/explicit.py'
2026-03-09T19:07:50,501   adding 'galaxy/tool_util/deps/container_resolvers/mulled.py'
2026-03-09T19:07:50,503   adding 'galaxy/tool_util/deps/container_resolvers/test.py'
2026-03-09T19:07:50,505   adding 'galaxy/tool_util/deps/mulled/__init__.py'
2026-03-09T19:07:50,506   adding 'galaxy/tool_util/deps/mulled/_cli.py'
2026-03-09T19:07:50,508   adding 'galaxy/tool_util/deps/mulled/get_tests.py'
2026-03-09T19:07:50,510   adding 'galaxy/tool_util/deps/mulled/invfile.lua'
2026-03-09T19:07:50,513   adding 'galaxy/tool_util/deps/mulled/mulled_build.py'
2026-03-09T19:07:50,514   adding 'galaxy/tool_util/deps/mulled/mulled_build_channel.py'
2026-03-09T19:07:50,516   adding 'galaxy/tool_util/deps/mulled/mulled_build_files.py'
2026-03-09T19:07:50,517   adding 'galaxy/tool_util/deps/mulled/mulled_build_tool.py'
2026-03-09T19:07:50,518   adding 'galaxy/tool_util/deps/mulled/mulled_hash.py'
2026-03-09T19:07:50,520   adding 'galaxy/tool_util/deps/mulled/mulled_list.py'
2026-03-09T19:07:50,522   adding 'galaxy/tool_util/deps/mulled/mulled_search.py'
2026-03-09T19:07:50,524   adding 'galaxy/tool_util/deps/mulled/mulled_update_singularity_containers.py'
2026-03-09T19:07:50,527   adding 'galaxy/tool_util/deps/mulled/util.py'
2026-03-09T19:07:50,530   adding 'galaxy/tool_util/deps/resolvers/__init__.py'
2026-03-09T19:07:50,531   adding 'galaxy/tool_util/deps/resolvers/brewed_tool_shed_packages.py'
2026-03-09T19:07:50,534   adding 'galaxy/tool_util/deps/resolvers/conda.py'
2026-03-09T19:07:50,535   adding 'galaxy/tool_util/deps/resolvers/default_conda_mapping.yml'
2026-03-09T19:07:50,537   adding 'galaxy/tool_util/deps/resolvers/galaxy_packages.py'
2026-03-09T19:07:50,538   adding 'galaxy/tool_util/deps/resolvers/homebrew.py'
2026-03-09T19:07:50,540   adding 'galaxy/tool_util/deps/resolvers/lmod.py'
2026-03-09T19:07:50,542   adding 'galaxy/tool_util/deps/resolvers/modules.py'
2026-03-09T19:07:50,544   adding 'galaxy/tool_util/deps/resolvers/resolver_mixins.py'
2026-03-09T19:07:50,545   adding 'galaxy/tool_util/deps/resolvers/tool_shed_packages.py'
2026-03-09T19:07:50,547   adding 'galaxy/tool_util/deps/resolvers/unlinked_tool_shed_packages.py'
2026-03-09T19:07:50,549   adding 'galaxy/tool_util/linters/__init__.py'
2026-03-09T19:07:50,550   adding 'galaxy/tool_util/linters/_util.py'
2026-03-09T19:07:50,551   adding 'galaxy/tool_util/linters/citations.py'
2026-03-09T19:07:50,553   adding 'galaxy/tool_util/linters/command.py'
2026-03-09T19:07:50,554   adding 'galaxy/tool_util/linters/cwl.py'
2026-03-09T19:07:50,556   adding 'galaxy/tool_util/linters/datatypes.py'
2026-03-09T19:07:50,567   adding 'galaxy/tool_util/linters/datatypes_conf.xml.sample'
2026-03-09T19:07:50,569   adding 'galaxy/tool_util/linters/general.py'
2026-03-09T19:07:50,570   adding 'galaxy/tool_util/linters/help.py'
2026-03-09T19:07:50,575   adding 'galaxy/tool_util/linters/inputs.py'
2026-03-09T19:07:50,577   adding 'galaxy/tool_util/linters/output.py'
2026-03-09T19:07:50,578   adding 'galaxy/tool_util/linters/stdio.py'
2026-03-09T19:07:50,581   adding 'galaxy/tool_util/linters/tests.py'
2026-03-09T19:07:50,582   adding 'galaxy/tool_util/linters/xml_order.py'
2026-03-09T19:07:50,583   adding 'galaxy/tool_util/linters/xsd.py'
2026-03-09T19:07:50,585   adding 'galaxy/tool_util/locations/__init__.py'
2026-03-09T19:07:50,586   adding 'galaxy/tool_util/locations/dockstore.py'
2026-03-09T19:07:50,587   adding 'galaxy/tool_util/locations/file.py'
2026-03-09T19:07:50,589   adding 'galaxy/tool_util/locations/http.py'
2026-03-09T19:07:50,590   adding 'galaxy/tool_util/ontologies/__init__.py'
2026-03-09T19:07:50,596   adding 'galaxy/tool_util/ontologies/biotools_mappings.tsv'
2026-03-09T19:07:50,597   adding 'galaxy/tool_util/ontologies/edam_operation_mappings.tsv'
2026-03-09T19:07:50,599   adding 'galaxy/tool_util/ontologies/edam_topic_mappings.tsv'
2026-03-09T19:07:50,600   adding 'galaxy/tool_util/ontologies/ontology_data.py'
2026-03-09T19:07:50,602   adding 'galaxy/tool_util/parameters/__init__.py'
2026-03-09T19:07:50,604   adding 'galaxy/tool_util/parameters/case.py'
2026-03-09T19:07:50,606   adding 'galaxy/tool_util/parameters/convert.py'
2026-03-09T19:07:50,608   adding 'galaxy/tool_util/parameters/factory.py'
2026-03-09T19:07:50,610   adding 'galaxy/tool_util/parameters/json.py'
2026-03-09T19:07:50,611   adding 'galaxy/tool_util/parameters/model_validation.py'
2026-03-09T19:07:50,612   adding 'galaxy/tool_util/parameters/state.py'
2026-03-09T19:07:50,614   adding 'galaxy/tool_util/parameters/visitor.py'
2026-03-09T19:07:50,615   adding 'galaxy/tool_util/parameters/scripts/__init__.py'
2026-03-09T19:07:50,617   adding 'galaxy/tool_util/parameters/scripts/validate_test_cases.py'
2026-03-09T19:07:50,619   adding 'galaxy/tool_util/parser/__init__.py'
2026-03-09T19:07:50,620   adding 'galaxy/tool_util/parser/cwl.py'
2026-03-09T19:07:50,622   adding 'galaxy/tool_util/parser/factory.py'
2026-03-09T19:07:50,626   adding 'galaxy/tool_util/parser/interface.py'
2026-03-09T19:07:50,629   adding 'galaxy/tool_util/parser/output_actions.py'
2026-03-09T19:07:50,631   adding 'galaxy/tool_util/parser/output_collection_def.py'
2026-03-09T19:07:50,633   adding 'galaxy/tool_util/parser/output_objects.py'
2026-03-09T19:07:50,635   adding 'galaxy/tool_util/parser/parameter_validators.py'
2026-03-09T19:07:50,637   adding 'galaxy/tool_util/parser/stdio.py'
2026-03-09T19:07:50,638   adding 'galaxy/tool_util/parser/util.py'
2026-03-09T19:07:50,646   adding 'galaxy/tool_util/parser/xml.py'
2026-03-09T19:07:50,649   adding 'galaxy/tool_util/parser/yaml.py'
2026-03-09T19:07:50,651   adding 'galaxy/tool_util/toolbox/__init__.py'
2026-03-09T19:07:50,659   adding 'galaxy/tool_util/toolbox/base.py'
2026-03-09T19:07:50,661   adding 'galaxy/tool_util/toolbox/integrated_panel.py'
2026-03-09T19:07:50,663   adding 'galaxy/tool_util/toolbox/panel.py'
2026-03-09T19:07:50,666   adding 'galaxy/tool_util/toolbox/parser.py'
2026-03-09T19:07:50,667   adding 'galaxy/tool_util/toolbox/watcher.py'
2026-03-09T19:07:50,670   adding 'galaxy/tool_util/toolbox/filters/__init__.py'
2026-03-09T19:07:50,671   adding 'galaxy/tool_util/toolbox/filters/examples.py.sample'
2026-03-09T19:07:50,673   adding 'galaxy/tool_util/toolbox/lineages/__init__.py'
2026-03-09T19:07:50,674   adding 'galaxy/tool_util/toolbox/lineages/factory.py'
2026-03-09T19:07:50,676   adding 'galaxy/tool_util/toolbox/lineages/interface.py'
2026-03-09T19:07:50,677   adding 'galaxy/tool_util/toolbox/views/__init__.py'
2026-03-09T19:07:50,679   adding 'galaxy/tool_util/toolbox/views/definitions.py'
2026-03-09T19:07:50,681   adding 'galaxy/tool_util/toolbox/views/edam.py'
2026-03-09T19:07:50,682   adding 'galaxy/tool_util/toolbox/views/interface.py'
2026-03-09T19:07:50,683   adding 'galaxy/tool_util/toolbox/views/sources.py'
2026-03-09T19:07:50,685   adding 'galaxy/tool_util/toolbox/views/static.py'
2026-03-09T19:07:50,687   adding 'galaxy/tool_util/unittest_utils/__init__.py'
2026-03-09T19:07:50,688   adding 'galaxy/tool_util/unittest_utils/interactor.py'
2026-03-09T19:07:50,690   adding 'galaxy/tool_util/unittest_utils/parameters.py'
2026-03-09T19:07:50,691   adding 'galaxy/tool_util/unittest_utils/sample_data.py'
2026-03-09T19:07:50,693   adding 'galaxy/tool_util/upgrade/__init__.py'
2026-03-09T19:07:50,695   adding 'galaxy/tool_util/upgrade/script.py'
2026-03-09T19:07:50,696   adding 'galaxy/tool_util/upgrade/upgrade_codes.json'
2026-03-09T19:07:50,700   adding 'galaxy/tool_util/verify/__init__.py'
2026-03-09T19:07:50,702   adding 'galaxy/tool_util/verify/_types.py'
2026-03-09T19:07:50,704   adding 'galaxy/tool_util/verify/codegen.py'
2026-03-09T19:07:50,714   adding 'galaxy/tool_util/verify/interactor.py'
2026-03-09T19:07:50,717   adding 'galaxy/tool_util/verify/parse.py'
2026-03-09T19:07:50,720   adding 'galaxy/tool_util/verify/script.py'
2026-03-09T19:07:50,722   adding 'galaxy/tool_util/verify/test_config.sample.yml'
2026-03-09T19:07:50,723   adding 'galaxy/tool_util/verify/test_data.py'
2026-03-09T19:07:50,724   adding 'galaxy/tool_util/verify/wait.py'
2026-03-09T19:07:50,726   adding 'galaxy/tool_util/verify/asserts/__init__.py'
2026-03-09T19:07:50,728   adding 'galaxy/tool_util/verify/asserts/_types.py'
2026-03-09T19:07:50,729   adding 'galaxy/tool_util/verify/asserts/_util.py'
2026-03-09T19:07:50,731   adding 'galaxy/tool_util/verify/asserts/archive.py'
2026-03-09T19:07:50,732   adding 'galaxy/tool_util/verify/asserts/hdf5.py'
2026-03-09T19:07:50,735   adding 'galaxy/tool_util/verify/asserts/image.py'
2026-03-09T19:07:50,737   adding 'galaxy/tool_util/verify/asserts/json.py'
2026-03-09T19:07:50,738   adding 'galaxy/tool_util/verify/asserts/size.py'
2026-03-09T19:07:50,739   adding 'galaxy/tool_util/verify/asserts/tabular.py'
2026-03-09T19:07:50,741   adding 'galaxy/tool_util/verify/asserts/text.py'
2026-03-09T19:07:50,742   adding 'galaxy/tool_util/verify/asserts/xml.py'
2026-03-09T19:07:50,744   adding 'galaxy/tool_util/xsd/LICENSE'
2026-03-09T19:07:50,746   adding 'galaxy/tool_util/xsd/README.md'
2026-03-09T19:07:50,747   adding 'galaxy/tool_util/xsd/galaxy.jxb'
2026-03-09T19:07:50,787   adding 'galaxy/tool_util/xsd/galaxy.xsd'
2026-03-09T19:07:50,793   adding 'galaxy_tool_util-25.1.2.dist-info/licenses/LICENSE'
2026-03-09T19:07:50,799   adding 'galaxy_tool_util-25.1.2.dist-info/METADATA'
2026-03-09T19:07:50,800   adding 'galaxy_tool_util-25.1.2.dist-info/WHEEL'
2026-03-09T19:07:50,801   adding 'galaxy_tool_util-25.1.2.dist-info/entry_points.txt'
2026-03-09T19:07:50,802   adding 'galaxy_tool_util-25.1.2.dist-info/top_level.txt'
2026-03-09T19:07:50,805   adding 'galaxy_tool_util-25.1.2.dist-info/RECORD'
2026-03-09T19:07:50,815   removing build/bdist.linux-armv7l/wheel
2026-03-09T19:07:50,951   Building wheel for galaxy-tool-util (pyproject.toml): finished with status 'done'
2026-03-09T19:07:50,968   Created wheel for galaxy-tool-util: filename=galaxy_tool_util-25.1.2-py3-none-any.whl size=524014 sha256=b513e0841b08926b4f575b528fc1e53727b522efce8c2ce778762b7322cc7b1d
2026-03-09T19:07:50,969   Stored in directory: /tmp/pip-ephem-wheel-cache-z7xnovof/wheels/db/8c/4e/fe0cad8791ef36a9a5aac2f73ee9ccf91b044374df08137601
2026-03-09T19:07:50,993 Successfully built galaxy-tool-util
2026-03-09T19:07:51,008 Removed build tracker: '/tmp/pip-build-tracker-wf9tzj1c'