2026-03-12T16:48:36,220 Created temporary directory: /tmp/pip-ephem-wheel-cache-2sq9hwfb 2026-03-12T16:48:36,221 Created temporary directory: /tmp/pip-build-tracker-sw76le2m 2026-03-12T16:48:36,222 Initialized build tracking at /tmp/pip-build-tracker-sw76le2m 2026-03-12T16:48:36,222 Created build tracker: /tmp/pip-build-tracker-sw76le2m 2026-03-12T16:48:36,223 Entered build tracker: /tmp/pip-build-tracker-sw76le2m 2026-03-12T16:48:36,224 Created temporary directory: /tmp/pip-wheel-c_hbl2dv 2026-03-12T16:48:36,227 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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(from https://www.piwheels.org/simple/bioconvert/) 2026-03-12T16:48:36,820 Skipping link: No binaries permitted for bioconvert: https://archive1.piwheels.org/simple/bioconvert/bioconvert-0.0.4-py3-none-any.whl#sha256=5bd2829cb95202c684525c7e0d87ca572715377be051c60a0b2bf58be49a63fc (from https://www.piwheels.org/simple/bioconvert/) 2026-03-12T16:48:36,821 Skipping link: not a file: https://www.piwheels.org/simple/bioconvert/ 2026-03-12T16:48:36,821 Skipping link: not a file: https://pypi.org/simple/bioconvert/ 2026-03-12T16:48:36,846 Given no hashes to check 1 links for project 'bioconvert': discarding no candidates 2026-03-12T16:48:36,865 Collecting bioconvert==1.2.0 2026-03-12T16:48:36,868 Created temporary directory: /tmp/pip-unpack-ri0kes5q 2026-03-12T16:48:37,001 Downloading bioconvert-1.2.0.tar.gz (242 kB) 2026-03-12T16:48:37,446 Added bioconvert==1.2.0 from https://files.pythonhosted.org/packages/0b/ad/291e24c1d60f39ca269c18873272a3153c5e5f7679531c93bd8a9fdcfd91/bioconvert-1.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-sw76le2m' 2026-03-12T16:48:37,452 Created temporary directory: /tmp/pip-build-env-p_81rg5o 2026-03-12T16:48:37,457 Installing build dependencies: started 2026-03-12T16:48:37,458 Running command pip subprocess to install build dependencies 2026-03-12T16:48:38,580 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-12T16:48:39,164 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-12T16:48:39,187 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-12T16:48:40,919 Collecting setuptools>=61.0 2026-03-12T16:48:41,001 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-12T16:48:41,266 Collecting wheel 2026-03-12T16:48:41,280 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-12T16:48:41,465 Collecting packaging>=24.0 2026-03-12T16:48:41,482 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-12T16:48:44,469 Installing collected packages: setuptools, packaging, wheel 2026-03-12T16:48:48,063 Creating /tmp/pip-build-env-p_81rg5o/overlay/local/bin 2026-03-12T16:48:48,065 changing mode of /tmp/pip-build-env-p_81rg5o/overlay/local/bin/wheel to 755 2026-03-12T16:48:48,085 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-12T16:48:48,363 Installing build dependencies: finished with status 'done' 2026-03-12T16:48:48,369 Getting requirements to build wheel: started 2026-03-12T16:48:48,370 Running command Getting requirements to build wheel 2026-03-12T16:48:49,011 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-12T16:48:49,011 !! 2026-03-12T16:48:49,012 ******************************************************************************** 2026-03-12T16:48:49,012 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-12T16:48:49,013 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-12T16:48:49,014 or your builds will no longer be supported. 2026-03-12T16:48:49,015 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,015 ******************************************************************************** 2026-03-12T16:48:49,016 !! 2026-03-12T16:48:49,016 corresp(dist, value, root_dir) 2026-03-12T16:48:49,096 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:49,096 !! 2026-03-12T16:48:49,097 ******************************************************************************** 2026-03-12T16:48:49,098 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:49,099 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:49,100 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,101 ******************************************************************************** 2026-03-12T16:48:49,102 !! 2026-03-12T16:48:49,102 dist._finalize_license_expression() 2026-03-12T16:48:49,103 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:49,104 !! 2026-03-12T16:48:49,105 ******************************************************************************** 2026-03-12T16:48:49,105 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:49,107 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:49,108 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,108 ******************************************************************************** 2026-03-12T16:48:49,110 !! 2026-03-12T16:48:49,110 self._finalize_license_expression() 2026-03-12T16:48:49,111 running egg_info 2026-03-12T16:48:49,116 writing bioconvert.egg-info/PKG-INFO 2026-03-12T16:48:49,124 writing dependency_links to bioconvert.egg-info/dependency_links.txt 2026-03-12T16:48:49,126 writing entry points to bioconvert.egg-info/entry_points.txt 2026-03-12T16:48:49,129 writing requirements to bioconvert.egg-info/requires.txt 2026-03-12T16:48:49,130 writing top-level names to bioconvert.egg-info/top_level.txt 2026-03-12T16:48:49,175 reading manifest file 'bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:49,186 reading manifest template 'MANIFEST.in' 2026-03-12T16:48:49,188 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-03-12T16:48:49,190 warning: no previously-included files matching '*pyc' found under directory '*' 2026-03-12T16:48:49,191 warning: no files found matching 'LICENSE' 2026-03-12T16:48:49,193 warning: no previously-included files matching '*' found under directory 'test' 2026-03-12T16:48:49,193 adding license file 'COPYING' 2026-03-12T16:48:49,202 writing manifest file 'bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:49,300 Getting requirements to build wheel: finished with status 'done' 2026-03-12T16:48:49,303 Created temporary directory: /tmp/pip-modern-metadata-9tt9khaa 2026-03-12T16:48:49,305 Preparing metadata (pyproject.toml): started 2026-03-12T16:48:49,307 Running command Preparing metadata (pyproject.toml) 2026-03-12T16:48:49,866 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-12T16:48:49,867 !! 2026-03-12T16:48:49,868 ******************************************************************************** 2026-03-12T16:48:49,868 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-12T16:48:49,869 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-12T16:48:49,870 or your builds will no longer be supported. 2026-03-12T16:48:49,871 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,871 ******************************************************************************** 2026-03-12T16:48:49,872 !! 2026-03-12T16:48:49,873 corresp(dist, value, root_dir) 2026-03-12T16:48:49,942 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:49,943 !! 2026-03-12T16:48:49,944 ******************************************************************************** 2026-03-12T16:48:49,945 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:49,946 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:49,947 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,948 ******************************************************************************** 2026-03-12T16:48:49,949 !! 2026-03-12T16:48:49,950 dist._finalize_license_expression() 2026-03-12T16:48:49,950 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:49,951 !! 2026-03-12T16:48:49,952 ******************************************************************************** 2026-03-12T16:48:49,952 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:49,954 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:49,955 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:49,955 ******************************************************************************** 2026-03-12T16:48:49,956 !! 2026-03-12T16:48:49,957 self._finalize_license_expression() 2026-03-12T16:48:49,957 running dist_info 2026-03-12T16:48:49,965 creating /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info 2026-03-12T16:48:49,965 writing /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/PKG-INFO 2026-03-12T16:48:49,973 writing dependency_links to /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/dependency_links.txt 2026-03-12T16:48:49,975 writing entry points to /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/entry_points.txt 2026-03-12T16:48:49,978 writing requirements to /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/requires.txt 2026-03-12T16:48:49,979 writing top-level names to /tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/top_level.txt 2026-03-12T16:48:49,981 writing manifest file '/tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:50,020 reading manifest file '/tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:50,022 reading manifest template 'MANIFEST.in' 2026-03-12T16:48:50,024 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-03-12T16:48:50,025 warning: no previously-included files matching '*pyc' found under directory '*' 2026-03-12T16:48:50,026 warning: no files found matching 'LICENSE' 2026-03-12T16:48:50,027 warning: no previously-included files matching '*' found under directory 'test' 2026-03-12T16:48:50,028 adding license file 'COPYING' 2026-03-12T16:48:50,035 writing manifest file '/tmp/pip-modern-metadata-9tt9khaa/bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:50,036 creating '/tmp/pip-modern-metadata-9tt9khaa/bioconvert-1.2.0.dist-info' 2026-03-12T16:48:50,162 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-12T16:48:50,169 Source in /tmp/pip-wheel-c_hbl2dv/bioconvert_80c1fd711f694c5fbf260eb5c9df2287 has version 1.2.0, which satisfies requirement bioconvert==1.2.0 from https://files.pythonhosted.org/packages/0b/ad/291e24c1d60f39ca269c18873272a3153c5e5f7679531c93bd8a9fdcfd91/bioconvert-1.2.0.tar.gz 2026-03-12T16:48:50,169 Removed bioconvert==1.2.0 from https://files.pythonhosted.org/packages/0b/ad/291e24c1d60f39ca269c18873272a3153c5e5f7679531c93bd8a9fdcfd91/bioconvert-1.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-sw76le2m' 2026-03-12T16:48:50,179 Created temporary directory: /tmp/pip-unpack-xlvk7ivy 2026-03-12T16:48:50,179 Building wheels for collected packages: bioconvert 2026-03-12T16:48:50,184 Created temporary directory: /tmp/pip-wheel-j1ableuw 2026-03-12T16:48:50,184 Destination directory: /tmp/pip-wheel-j1ableuw 2026-03-12T16:48:50,187 Building wheel for bioconvert (pyproject.toml): started 2026-03-12T16:48:50,188 Running command Building wheel for bioconvert (pyproject.toml) 2026-03-12T16:48:50,742 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-12T16:48:50,743 !! 2026-03-12T16:48:50,744 ******************************************************************************** 2026-03-12T16:48:50,745 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-12T16:48:50,746 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-12T16:48:50,746 or your builds will no longer be supported. 2026-03-12T16:48:50,747 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:50,748 ******************************************************************************** 2026-03-12T16:48:50,749 !! 2026-03-12T16:48:50,749 corresp(dist, value, root_dir) 2026-03-12T16:48:50,814 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:50,815 !! 2026-03-12T16:48:50,816 ******************************************************************************** 2026-03-12T16:48:50,817 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:50,818 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:50,819 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:50,820 ******************************************************************************** 2026-03-12T16:48:50,821 !! 2026-03-12T16:48:50,822 dist._finalize_license_expression() 2026-03-12T16:48:50,822 /tmp/pip-build-env-p_81rg5o/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-12T16:48:50,823 !! 2026-03-12T16:48:50,823 ******************************************************************************** 2026-03-12T16:48:50,824 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-12T16:48:50,825 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-03-12T16:48:50,825 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-12T16:48:50,826 ******************************************************************************** 2026-03-12T16:48:50,827 !! 2026-03-12T16:48:50,827 self._finalize_license_expression() 2026-03-12T16:48:50,828 running bdist_wheel 2026-03-12T16:48:50,839 running build 2026-03-12T16:48:50,840 running build_py 2026-03-12T16:48:50,846 creating build/lib/doc 2026-03-12T16:48:50,848 copying doc/create_automodules_allconverters.py -> build/lib/doc 2026-03-12T16:48:50,850 copying doc/conf.py -> build/lib/doc 2026-03-12T16:48:50,851 copying doc/create_graph.py -> build/lib/doc 2026-03-12T16:48:50,854 creating build/lib/examples 2026-03-12T16:48:50,854 copying examples/plot_methods.py -> build/lib/examples 2026-03-12T16:48:50,857 copying examples/plot_graph_colored.py -> build/lib/examples 2026-03-12T16:48:50,858 copying examples/plot_benchmark.py -> build/lib/examples 2026-03-12T16:48:50,860 copying examples/plot_graph_clustered.py -> build/lib/examples 2026-03-12T16:48:50,862 copying examples/plot_graph.py -> build/lib/examples 2026-03-12T16:48:50,867 creating build/lib/bioconvert 2026-03-12T16:48:50,868 copying bioconvert/ods2csv.py -> build/lib/bioconvert 2026-03-12T16:48:50,870 copying bioconvert/bz22gz.py -> build/lib/bioconvert 2026-03-12T16:48:50,872 copying bioconvert/jaspar2transfac.py -> build/lib/bioconvert 2026-03-12T16:48:50,874 copying bioconvert/phylip2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,875 copying bioconvert/xmfa2phylip.py -> build/lib/bioconvert 2026-03-12T16:48:50,877 copying bioconvert/vcf2bed.py -> build/lib/bioconvert 2026-03-12T16:48:50,879 copying bioconvert/fastq2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,881 copying bioconvert/json2yaml.py -> build/lib/bioconvert 2026-03-12T16:48:50,883 copying bioconvert/bplink2vcf.py -> build/lib/bioconvert 2026-03-12T16:48:50,885 copying bioconvert/scf2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,887 copying bioconvert/twobit2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,889 copying bioconvert/vcf2plink.py -> build/lib/bioconvert 2026-03-12T16:48:50,891 copying bioconvert/pajek2gml.py -> build/lib/bioconvert 2026-03-12T16:48:50,893 copying bioconvert/bplink2plink.py -> build/lib/bioconvert 2026-03-12T16:48:50,895 copying bioconvert/bigbed2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:50,897 copying bioconvert/fasta2phylip.py -> build/lib/bioconvert 2026-03-12T16:48:50,899 copying bioconvert/bam2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:50,901 copying bioconvert/gz2bz2.py -> build/lib/bioconvert 2026-03-12T16:48:50,903 copying bioconvert/pdb2smiles.py -> build/lib/bioconvert 2026-03-12T16:48:50,905 copying bioconvert/dsrc2gz.py -> build/lib/bioconvert 2026-03-12T16:48:50,907 copying bioconvert/sdf2smiles.py -> build/lib/bioconvert 2026-03-12T16:48:50,909 copying bioconvert/fasta_qual2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:50,911 copying bioconvert/embl2genbank.py -> build/lib/bioconvert 2026-03-12T16:48:50,913 copying bioconvert/nexus2clustal.py -> build/lib/bioconvert 2026-03-12T16:48:50,915 copying bioconvert/bedgraph2bigwig.py -> build/lib/bioconvert 2026-03-12T16:48:50,916 copying bioconvert/bam2cov.py -> build/lib/bioconvert 2026-03-12T16:48:50,918 copying bioconvert/scf2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:50,921 copying bioconvert/nexus2newick.py -> build/lib/bioconvert 2026-03-12T16:48:50,923 copying bioconvert/newick2nexus.py -> build/lib/bioconvert 2026-03-12T16:48:50,925 copying bioconvert/phyloxml2newick.py -> build/lib/bioconvert 2026-03-12T16:48:50,926 copying bioconvert/genbank2gff3.py -> build/lib/bioconvert 2026-03-12T16:48:50,928 copying bioconvert/bcf2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:50,930 copying bioconvert/genbank2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,933 copying bioconvert/plink2vcf.py -> build/lib/bioconvert 2026-03-12T16:48:50,935 copying bioconvert/fasta2nexus.py -> build/lib/bioconvert 2026-03-12T16:48:50,937 copying bioconvert/gml2pajek.py -> build/lib/bioconvert 2026-03-12T16:48:50,938 copying bioconvert/stockholm2phylip.py -> build/lib/bioconvert 2026-03-12T16:48:50,940 copying bioconvert/phylip2stockholm.py -> build/lib/bioconvert 2026-03-12T16:48:50,942 copying bioconvert/maf2sam.py -> build/lib/bioconvert 2026-03-12T16:48:50,944 copying bioconvert/gff32gtf.py -> build/lib/bioconvert 2026-03-12T16:48:50,945 copying bioconvert/cram2sam.py -> build/lib/bioconvert 2026-03-12T16:48:50,947 copying bioconvert/bam2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:50,949 copying bioconvert/phylip2nexus.py -> build/lib/bioconvert 2026-03-12T16:48:50,951 copying bioconvert/wig2bed.py -> build/lib/bioconvert 2026-03-12T16:48:50,954 copying bioconvert/bam2json.py -> build/lib/bioconvert 2026-03-12T16:48:50,957 copying bioconvert/fast52pod5.py -> build/lib/bioconvert 2026-03-12T16:48:50,958 copying bioconvert/sra2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:50,961 copying bioconvert/cram2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:50,963 copying bioconvert/nexus2phylip.py -> build/lib/bioconvert 2026-03-12T16:48:50,965 copying bioconvert/transfac2jaspar.py -> build/lib/bioconvert 2026-03-12T16:48:50,967 copying bioconvert/bedgraph2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:50,968 copying bioconvert/clustal2stockholm.py -> build/lib/bioconvert 2026-03-12T16:48:50,970 copying bioconvert/sam2bam.py -> build/lib/bioconvert 2026-03-12T16:48:50,972 copying bioconvert/xls2csv.py -> build/lib/bioconvert 2026-03-12T16:48:50,975 copying bioconvert/fasta2genbank.py -> build/lib/bioconvert 2026-03-12T16:48:50,977 copying bioconvert/gz2dsrc.py -> build/lib/bioconvert 2026-03-12T16:48:50,979 copying bioconvert/genbank2faa.py -> build/lib/bioconvert 2026-03-12T16:48:50,981 copying bioconvert/csv2tsv.py -> build/lib/bioconvert 2026-03-12T16:48:50,983 copying bioconvert/bam2sam.py -> build/lib/bioconvert 2026-03-12T16:48:50,985 copying bioconvert/fasta2fasta_agp.py -> build/lib/bioconvert 2026-03-12T16:48:50,987 copying bioconvert/abi2qual.py -> build/lib/bioconvert 2026-03-12T16:48:50,989 copying bioconvert/plink2bplink.py -> build/lib/bioconvert 2026-03-12T16:48:50,991 copying bioconvert/__init__.py -> build/lib/bioconvert 2026-03-12T16:48:50,993 copying bioconvert/stockholm2clustal.py -> build/lib/bioconvert 2026-03-12T16:48:50,995 copying bioconvert/cram2bam.py -> build/lib/bioconvert 2026-03-12T16:48:50,997 copying bioconvert/vcf2bplink.py -> build/lib/bioconvert 2026-03-12T16:48:50,999 copying bioconvert/bedgraph2cov.py -> build/lib/bioconvert 2026-03-12T16:48:51,001 copying bioconvert/vcf2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:51,002 copying bioconvert/genbank2embl.py -> build/lib/bioconvert 2026-03-12T16:48:51,004 copying bioconvert/bed2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:51,006 copying bioconvert/gml2graphml.py -> build/lib/bioconvert 2026-03-12T16:48:51,008 copying bioconvert/vcf2bcf.py -> build/lib/bioconvert 2026-03-12T16:48:51,010 copying bioconvert/bam2bigwig.py -> build/lib/bioconvert 2026-03-12T16:48:51,012 copying bioconvert/csv2xls.py -> build/lib/bioconvert 2026-03-12T16:48:51,014 copying bioconvert/bigwig2bedgraph.py -> build/lib/bioconvert 2026-03-12T16:48:51,016 copying bioconvert/gfa2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,018 copying bioconvert/mol22smiles.py -> build/lib/bioconvert 2026-03-12T16:48:51,020 copying bioconvert/fastq2fasta_qual.py -> build/lib/bioconvert 2026-03-12T16:48:51,022 copying bioconvert/gff32gff2.py -> build/lib/bioconvert 2026-03-12T16:48:51,025 copying bioconvert/fastq2qual.py -> build/lib/bioconvert 2026-03-12T16:48:51,027 copying bioconvert/graphml2gml.py -> build/lib/bioconvert 2026-03-12T16:48:51,029 copying bioconvert/embl2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,031 copying bioconvert/gff22gff3.py -> build/lib/bioconvert 2026-03-12T16:48:51,033 copying bioconvert/yaml2json.py -> build/lib/bioconvert 2026-03-12T16:48:51,035 copying bioconvert/sam2paf.py -> build/lib/bioconvert 2026-03-12T16:48:51,037 copying bioconvert/clustal2phylip.py -> build/lib/bioconvert 2026-03-12T16:48:51,039 copying bioconvert/fasta2twobit.py -> build/lib/bioconvert 2026-03-12T16:48:51,041 copying bioconvert/bcf2vcf.py -> build/lib/bioconvert 2026-03-12T16:48:51,043 copying bioconvert/abi2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:51,044 copying bioconvert/fasta2faa.py -> build/lib/bioconvert 2026-03-12T16:48:51,047 copying bioconvert/pajek2graphml.py -> build/lib/bioconvert 2026-03-12T16:48:51,049 copying bioconvert/fasta2clustal.py -> build/lib/bioconvert 2026-03-12T16:48:51,051 copying bioconvert/tsv2csv.py -> build/lib/bioconvert 2026-03-12T16:48:51,054 copying bioconvert/clustal2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,056 copying bioconvert/cram2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,058 copying bioconvert/sam2cram.py -> build/lib/bioconvert 2026-03-12T16:48:51,060 copying bioconvert/phyloxml2nexus.py -> build/lib/bioconvert 2026-03-12T16:48:51,062 copying bioconvert/newick2phyloxml.py -> build/lib/bioconvert 2026-03-12T16:48:51,064 copying bioconvert/gtf22gff3.py -> build/lib/bioconvert 2026-03-12T16:48:51,066 copying bioconvert/nexus2phyloxml.py -> build/lib/bioconvert 2026-03-12T16:48:51,068 copying bioconvert/bam2cram.py -> build/lib/bioconvert 2026-03-12T16:48:51,070 copying bioconvert/phylip2xmfa.py -> build/lib/bioconvert 2026-03-12T16:48:51,073 copying bioconvert/abi2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,075 copying bioconvert/graphml2pajek.py -> build/lib/bioconvert 2026-03-12T16:48:51,077 copying bioconvert/bam2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:51,079 copying bioconvert/xlsx2csv.py -> build/lib/bioconvert 2026-03-12T16:48:51,081 copying bioconvert/clustal2nexus.py -> build/lib/bioconvert 2026-03-12T16:48:51,083 copying bioconvert/bam2bedgraph.py -> build/lib/bioconvert 2026-03-12T16:48:51,086 copying bioconvert/phylip2clustal.py -> build/lib/bioconvert 2026-03-12T16:48:51,088 copying bioconvert/bigwig2wiggle.py -> build/lib/bioconvert 2026-03-12T16:48:51,089 copying bioconvert/nexus2fasta.py -> build/lib/bioconvert 2026-03-12T16:48:51,091 copying bioconvert/bigbed2bed.py -> build/lib/bioconvert 2026-03-12T16:48:51,093 copying bioconvert/pdb2faa.py -> build/lib/bioconvert 2026-03-12T16:48:51,095 copying bioconvert/bam2tsv.py -> build/lib/bioconvert 2026-03-12T16:48:51,097 copying bioconvert/fasta2fastq.py -> build/lib/bioconvert 2026-03-12T16:48:51,100 creating build/lib/bioconvert/utils 2026-03-12T16:48:51,101 copying bioconvert/utils/__init__.py -> build/lib/bioconvert/utils 2026-03-12T16:48:51,103 creating build/lib/bioconvert/core 2026-03-12T16:48:51,104 copying bioconvert/core/converter.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,107 copying bioconvert/core/benchmark.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,109 copying bioconvert/core/levenshtein.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,111 copying bioconvert/core/graph.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,114 copying bioconvert/core/base.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,117 copying bioconvert/core/utils.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,120 copying bioconvert/core/__init__.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,121 copying bioconvert/core/decorators.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,124 copying bioconvert/core/init.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,126 copying bioconvert/core/shell.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,128 copying bioconvert/core/registry.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,130 copying bioconvert/core/extensions.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,132 copying bioconvert/core/downloader.py -> build/lib/bioconvert/core 2026-03-12T16:48:51,134 creating build/lib/bioconvert/data 2026-03-12T16:48:51,135 copying bioconvert/data/__init__.py -> build/lib/bioconvert/data 2026-03-12T16:48:51,137 creating build/lib/bioconvert/scripts 2026-03-12T16:48:51,138 copying bioconvert/scripts/converter.py -> build/lib/bioconvert/scripts 2026-03-12T16:48:51,141 copying bioconvert/scripts/__init__.py -> build/lib/bioconvert/scripts 2026-03-12T16:48:51,142 copying bioconvert/scripts/stats.py -> build/lib/bioconvert/scripts 2026-03-12T16:48:51,144 copying bioconvert/scripts/init_convert.py -> build/lib/bioconvert/scripts 2026-03-12T16:48:51,147 creating build/lib/bioconvert/simulator 2026-03-12T16:48:51,148 copying bioconvert/simulator/fastq.py -> build/lib/bioconvert/simulator 2026-03-12T16:48:51,149 copying bioconvert/simulator/fasta.py -> build/lib/bioconvert/simulator 2026-03-12T16:48:51,151 copying bioconvert/simulator/__init__.py -> build/lib/bioconvert/simulator 2026-03-12T16:48:51,153 copying bioconvert/simulator/gfa.py -> build/lib/bioconvert/simulator 2026-03-12T16:48:51,155 creating build/lib/bioconvert/misc 2026-03-12T16:48:51,156 copying bioconvert/misc/__init__.py -> build/lib/bioconvert/misc 2026-03-12T16:48:51,159 creating build/lib/bioconvert/io 2026-03-12T16:48:51,160 copying bioconvert/io/fasta.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,161 copying bioconvert/io/scf.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,164 copying bioconvert/io/__init__.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,165 copying bioconvert/io/gff2.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,168 copying bioconvert/io/genbank.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,170 copying bioconvert/io/maf.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,173 copying bioconvert/io/gff3.py -> build/lib/bioconvert/io 2026-03-12T16:48:51,176 creating build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,177 copying bioconvert/utils/biocode/tbl.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,179 copying bioconvert/utils/biocode/convert_genbank_to_gff3.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,181 copying bioconvert/utils/biocode/utils.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,184 copying bioconvert/utils/biocode/__init__.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,185 copying bioconvert/utils/biocode/things.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,188 copying bioconvert/utils/biocode/gff.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,191 copying bioconvert/utils/biocode/annotation.py -> build/lib/bioconvert/utils/biocode 2026-03-12T16:48:51,194 creating build/lib/bioconvert/data/testing 2026-03-12T16:48:51,195 copying bioconvert/data/testing/__init__.py -> build/lib/bioconvert/data/testing 2026-03-12T16:48:51,196 running egg_info 2026-03-12T16:48:51,206 writing bioconvert.egg-info/PKG-INFO 2026-03-12T16:48:51,213 writing dependency_links to bioconvert.egg-info/dependency_links.txt 2026-03-12T16:48:51,215 writing entry points to bioconvert.egg-info/entry_points.txt 2026-03-12T16:48:51,218 writing requirements to bioconvert.egg-info/requires.txt 2026-03-12T16:48:51,219 writing top-level names to bioconvert.egg-info/top_level.txt 2026-03-12T16:48:51,251 reading manifest file 'bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:51,262 reading manifest template 'MANIFEST.in' 2026-03-12T16:48:51,264 warning: no previously-included files matching '__pycache__' found under directory '*' 2026-03-12T16:48:51,265 warning: no previously-included files matching '*pyc' found under directory '*' 2026-03-12T16:48:51,267 warning: no files found matching 'LICENSE' 2026-03-12T16:48:51,268 warning: no previously-included files matching '*' found under directory 'test' 2026-03-12T16:48:51,268 adding license file 'COPYING' 2026-03-12T16:48:51,277 writing manifest file 'bioconvert.egg-info/SOURCES.txt' 2026-03-12T16:48:51,295 copying doc/script.sh -> build/lib/doc 2026-03-12T16:48:51,297 copying doc/script2.sh -> build/lib/doc 2026-03-12T16:48:51,299 copying examples/README.txt -> build/lib/examples 2026-03-12T16:48:51,301 copying examples/conversion.dot -> build/lib/examples 2026-03-12T16:48:51,304 copying examples/test.cov -> build/lib/examples 2026-03-12T16:48:51,309 copying bioconvert/data/README.rst -> build/lib/bioconvert/data 2026-03-12T16:48:51,311 copying bioconvert/data/measles.chrom.sizes -> build/lib/bioconvert/data 2026-03-12T16:48:51,313 copying bioconvert/data/test.bigwig -> build/lib/bioconvert/data 2026-03-12T16:48:51,316 copying bioconvert/data/test_SP1.fq.gz -> build/lib/bioconvert/data 2026-03-12T16:48:51,318 copying bioconvert/data/test_gfa2fasta_v1.gfa -> build/lib/bioconvert/data 2026-03-12T16:48:51,321 copying bioconvert/data/test_measles.fa.fai -> build/lib/bioconvert/data 2026-03-12T16:48:51,323 copying bioconvert/data/test_measles.sorted.bam -> build/lib/bioconvert/data 2026-03-12T16:48:51,326 copying bioconvert/misc/README.rst -> build/lib/bioconvert/misc 2026-03-12T16:48:51,328 copying bioconvert/misc/cython_fastq2fasta.pyx -> build/lib/bioconvert/misc 2026-03-12T16:48:51,330 copying bioconvert/misc/fastq2fasta.c -> build/lib/bioconvert/misc 2026-03-12T16:48:51,332 copying bioconvert/misc/fastq2fasta.pl -> build/lib/bioconvert/misc 2026-03-12T16:48:51,334 copying bioconvert/misc/install_goalign.sh -> build/lib/bioconvert/misc 2026-03-12T16:48:51,336 copying bioconvert/misc/install_gotree.sh -> build/lib/bioconvert/misc 2026-03-12T16:48:51,355 installing to build/bdist.linux-armv7l/wheel 2026-03-12T16:48:51,356 running install 2026-03-12T16:48:51,379 running install_lib 2026-03-12T16:48:51,384 creating build/bdist.linux-armv7l/wheel 2026-03-12T16:48:51,387 creating build/bdist.linux-armv7l/wheel/doc 2026-03-12T16:48:51,389 copying build/lib/doc/script.sh -> build/bdist.linux-armv7l/wheel/./doc 2026-03-12T16:48:51,390 copying build/lib/doc/create_automodules_allconverters.py -> build/bdist.linux-armv7l/wheel/./doc 2026-03-12T16:48:51,392 copying build/lib/doc/conf.py -> build/bdist.linux-armv7l/wheel/./doc 2026-03-12T16:48:51,394 copying build/lib/doc/script2.sh -> build/bdist.linux-armv7l/wheel/./doc 2026-03-12T16:48:51,396 copying build/lib/doc/create_graph.py -> build/bdist.linux-armv7l/wheel/./doc 2026-03-12T16:48:51,398 creating build/bdist.linux-armv7l/wheel/examples 2026-03-12T16:48:51,399 copying build/lib/examples/plot_methods.py -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,401 copying build/lib/examples/conversion.dot -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,404 copying build/lib/examples/plot_graph_colored.py -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,405 copying build/lib/examples/README.txt -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,407 copying build/lib/examples/plot_benchmark.py -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,409 copying build/lib/examples/plot_graph_clustered.py -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,411 copying build/lib/examples/test.cov -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,416 copying build/lib/examples/plot_graph.py -> build/bdist.linux-armv7l/wheel/./examples 2026-03-12T16:48:51,419 creating build/bdist.linux-armv7l/wheel/bioconvert 2026-03-12T16:48:51,420 copying build/lib/bioconvert/ods2csv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,422 copying build/lib/bioconvert/bz22gz.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,424 copying build/lib/bioconvert/jaspar2transfac.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,426 copying build/lib/bioconvert/phylip2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,428 copying build/lib/bioconvert/xmfa2phylip.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,429 copying build/lib/bioconvert/vcf2bed.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,431 copying build/lib/bioconvert/fastq2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,433 copying build/lib/bioconvert/json2yaml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,435 copying build/lib/bioconvert/bplink2vcf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,437 copying build/lib/bioconvert/scf2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,439 copying build/lib/bioconvert/twobit2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,440 copying build/lib/bioconvert/vcf2plink.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,442 copying build/lib/bioconvert/pajek2gml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,444 copying build/lib/bioconvert/bplink2plink.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,446 copying build/lib/bioconvert/bigbed2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,447 copying build/lib/bioconvert/fasta2phylip.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,450 copying build/lib/bioconvert/bam2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,452 copying build/lib/bioconvert/gz2bz2.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,454 copying build/lib/bioconvert/pdb2smiles.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,456 copying build/lib/bioconvert/dsrc2gz.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,458 copying build/lib/bioconvert/sdf2smiles.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,459 copying build/lib/bioconvert/fasta_qual2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,461 copying build/lib/bioconvert/embl2genbank.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,463 copying build/lib/bioconvert/nexus2clustal.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,465 copying build/lib/bioconvert/bedgraph2bigwig.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,467 copying build/lib/bioconvert/bam2cov.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,469 copying build/lib/bioconvert/scf2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,471 copying build/lib/bioconvert/nexus2newick.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,473 copying build/lib/bioconvert/newick2nexus.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,474 copying build/lib/bioconvert/phyloxml2newick.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,476 copying build/lib/bioconvert/genbank2gff3.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,478 copying build/lib/bioconvert/bcf2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,480 copying build/lib/bioconvert/genbank2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,482 copying build/lib/bioconvert/plink2vcf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,484 copying build/lib/bioconvert/fasta2nexus.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,486 copying build/lib/bioconvert/gml2pajek.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,488 copying build/lib/bioconvert/stockholm2phylip.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,490 creating build/bdist.linux-armv7l/wheel/bioconvert/utils 2026-03-12T16:48:51,491 copying build/lib/bioconvert/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils 2026-03-12T16:48:51,493 creating build/bdist.linux-armv7l/wheel/bioconvert/utils/biocode 2026-03-12T16:48:51,494 copying build/lib/bioconvert/utils/biocode/tbl.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,496 copying build/lib/bioconvert/utils/biocode/convert_genbank_to_gff3.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,498 copying build/lib/bioconvert/utils/biocode/utils.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,501 copying build/lib/bioconvert/utils/biocode/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,502 copying build/lib/bioconvert/utils/biocode/things.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,505 copying build/lib/bioconvert/utils/biocode/gff.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,508 copying build/lib/bioconvert/utils/biocode/annotation.py -> build/bdist.linux-armv7l/wheel/./bioconvert/utils/biocode 2026-03-12T16:48:51,510 copying build/lib/bioconvert/phylip2stockholm.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,512 copying build/lib/bioconvert/maf2sam.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,514 creating build/bdist.linux-armv7l/wheel/bioconvert/core 2026-03-12T16:48:51,515 copying build/lib/bioconvert/core/converter.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,517 copying build/lib/bioconvert/core/benchmark.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,520 copying build/lib/bioconvert/core/levenshtein.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,522 copying build/lib/bioconvert/core/graph.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,525 copying build/lib/bioconvert/core/base.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,527 copying build/lib/bioconvert/core/utils.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,529 copying build/lib/bioconvert/core/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,531 copying build/lib/bioconvert/core/decorators.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,533 copying build/lib/bioconvert/core/init.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,536 copying build/lib/bioconvert/core/shell.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,537 copying build/lib/bioconvert/core/registry.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,540 copying build/lib/bioconvert/core/extensions.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,542 copying build/lib/bioconvert/core/downloader.py -> build/bdist.linux-armv7l/wheel/./bioconvert/core 2026-03-12T16:48:51,544 copying build/lib/bioconvert/gff32gtf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,546 copying build/lib/bioconvert/cram2sam.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,548 copying build/lib/bioconvert/bam2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,551 creating build/bdist.linux-armv7l/wheel/bioconvert/data 2026-03-12T16:48:51,552 copying build/lib/bioconvert/data/test_measles.sorted.bam -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,554 copying build/lib/bioconvert/data/test_SP1.fq.gz -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,556 copying build/lib/bioconvert/data/test_measles.fa.fai -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,558 copying build/lib/bioconvert/data/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,560 creating build/bdist.linux-armv7l/wheel/bioconvert/data/testing 2026-03-12T16:48:51,561 copying build/lib/bioconvert/data/testing/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/data/testing 2026-03-12T16:48:51,562 copying build/lib/bioconvert/data/README.rst -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,564 copying build/lib/bioconvert/data/test_gfa2fasta_v1.gfa -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,567 copying build/lib/bioconvert/data/test.bigwig -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,569 copying build/lib/bioconvert/data/measles.chrom.sizes -> build/bdist.linux-armv7l/wheel/./bioconvert/data 2026-03-12T16:48:51,571 copying build/lib/bioconvert/phylip2nexus.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,572 copying build/lib/bioconvert/wig2bed.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,574 copying build/lib/bioconvert/bam2json.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,576 copying build/lib/bioconvert/fast52pod5.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,578 copying build/lib/bioconvert/sra2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,580 copying build/lib/bioconvert/cram2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,582 copying build/lib/bioconvert/nexus2phylip.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,584 copying build/lib/bioconvert/transfac2jaspar.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,586 copying build/lib/bioconvert/bedgraph2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,588 copying build/lib/bioconvert/clustal2stockholm.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,590 copying build/lib/bioconvert/sam2bam.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,591 copying build/lib/bioconvert/xls2csv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,594 creating build/bdist.linux-armv7l/wheel/bioconvert/scripts 2026-03-12T16:48:51,595 copying build/lib/bioconvert/scripts/converter.py -> build/bdist.linux-armv7l/wheel/./bioconvert/scripts 2026-03-12T16:48:51,598 copying build/lib/bioconvert/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/scripts 2026-03-12T16:48:51,599 copying build/lib/bioconvert/scripts/stats.py -> build/bdist.linux-armv7l/wheel/./bioconvert/scripts 2026-03-12T16:48:51,601 copying build/lib/bioconvert/scripts/init_convert.py -> build/bdist.linux-armv7l/wheel/./bioconvert/scripts 2026-03-12T16:48:51,603 copying build/lib/bioconvert/fasta2genbank.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,606 copying build/lib/bioconvert/gz2dsrc.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,607 copying build/lib/bioconvert/genbank2faa.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,609 copying build/lib/bioconvert/csv2tsv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,611 copying build/lib/bioconvert/bam2sam.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,613 copying build/lib/bioconvert/fasta2fasta_agp.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,616 copying build/lib/bioconvert/abi2qual.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,618 copying build/lib/bioconvert/plink2bplink.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,619 copying build/lib/bioconvert/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,621 copying build/lib/bioconvert/stockholm2clustal.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,623 copying build/lib/bioconvert/cram2bam.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,625 copying build/lib/bioconvert/vcf2bplink.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,627 copying build/lib/bioconvert/bedgraph2cov.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,628 copying build/lib/bioconvert/vcf2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,630 copying build/lib/bioconvert/genbank2embl.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,632 copying build/lib/bioconvert/bed2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,634 copying build/lib/bioconvert/gml2graphml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,635 copying build/lib/bioconvert/vcf2bcf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,637 copying build/lib/bioconvert/bam2bigwig.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,639 copying build/lib/bioconvert/csv2xls.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,641 copying build/lib/bioconvert/bigwig2bedgraph.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,643 copying build/lib/bioconvert/gfa2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,645 copying build/lib/bioconvert/mol22smiles.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,647 copying build/lib/bioconvert/fastq2fasta_qual.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,649 copying build/lib/bioconvert/gff32gff2.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,651 copying build/lib/bioconvert/fastq2qual.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,653 copying build/lib/bioconvert/graphml2gml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,656 creating build/bdist.linux-armv7l/wheel/bioconvert/simulator 2026-03-12T16:48:51,657 copying build/lib/bioconvert/simulator/fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert/simulator 2026-03-12T16:48:51,659 copying build/lib/bioconvert/simulator/fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert/simulator 2026-03-12T16:48:51,660 copying build/lib/bioconvert/simulator/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/simulator 2026-03-12T16:48:51,662 copying build/lib/bioconvert/simulator/gfa.py -> build/bdist.linux-armv7l/wheel/./bioconvert/simulator 2026-03-12T16:48:51,664 copying build/lib/bioconvert/embl2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,666 copying build/lib/bioconvert/gff22gff3.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,668 copying build/lib/bioconvert/yaml2json.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,670 copying build/lib/bioconvert/sam2paf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,672 copying build/lib/bioconvert/clustal2phylip.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,674 copying build/lib/bioconvert/fasta2twobit.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,676 creating build/bdist.linux-armv7l/wheel/bioconvert/misc 2026-03-12T16:48:51,677 copying build/lib/bioconvert/misc/cython_fastq2fasta.pyx -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,679 copying build/lib/bioconvert/misc/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,681 copying build/lib/bioconvert/misc/README.rst -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,682 copying build/lib/bioconvert/misc/fastq2fasta.c -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,684 copying build/lib/bioconvert/misc/fastq2fasta.pl -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,686 copying build/lib/bioconvert/misc/install_gotree.sh -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,688 copying build/lib/bioconvert/misc/install_goalign.sh -> build/bdist.linux-armv7l/wheel/./bioconvert/misc 2026-03-12T16:48:51,690 copying build/lib/bioconvert/bcf2vcf.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,692 copying build/lib/bioconvert/abi2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,693 copying build/lib/bioconvert/fasta2faa.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,696 copying build/lib/bioconvert/pajek2graphml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,697 copying build/lib/bioconvert/fasta2clustal.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,699 copying build/lib/bioconvert/tsv2csv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,701 copying build/lib/bioconvert/clustal2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,703 copying build/lib/bioconvert/cram2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,705 copying build/lib/bioconvert/sam2cram.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,707 copying build/lib/bioconvert/phyloxml2nexus.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,709 copying build/lib/bioconvert/newick2phyloxml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,711 copying build/lib/bioconvert/gtf22gff3.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,713 copying build/lib/bioconvert/nexus2phyloxml.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,716 copying build/lib/bioconvert/bam2cram.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,718 copying build/lib/bioconvert/phylip2xmfa.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,721 creating build/bdist.linux-armv7l/wheel/bioconvert/io 2026-03-12T16:48:51,722 copying build/lib/bioconvert/io/fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,724 copying build/lib/bioconvert/io/scf.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,727 copying build/lib/bioconvert/io/__init__.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,728 copying build/lib/bioconvert/io/gff2.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,731 copying build/lib/bioconvert/io/genbank.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,733 copying build/lib/bioconvert/io/maf.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,735 copying build/lib/bioconvert/io/gff3.py -> build/bdist.linux-armv7l/wheel/./bioconvert/io 2026-03-12T16:48:51,737 copying build/lib/bioconvert/abi2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,739 copying build/lib/bioconvert/graphml2pajek.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,741 copying build/lib/bioconvert/bam2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,743 copying build/lib/bioconvert/xlsx2csv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,745 copying build/lib/bioconvert/clustal2nexus.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,747 copying build/lib/bioconvert/bam2bedgraph.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,750 copying build/lib/bioconvert/phylip2clustal.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,751 copying build/lib/bioconvert/bigwig2wiggle.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,753 copying build/lib/bioconvert/nexus2fasta.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,756 copying build/lib/bioconvert/bigbed2bed.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,758 copying build/lib/bioconvert/pdb2faa.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,759 copying build/lib/bioconvert/bam2tsv.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,761 copying build/lib/bioconvert/fasta2fastq.py -> build/bdist.linux-armv7l/wheel/./bioconvert 2026-03-12T16:48:51,763 running install_egg_info 2026-03-12T16:48:51,983 Copying bioconvert.egg-info to build/bdist.linux-armv7l/wheel/./bioconvert-1.2.0-py3.11.egg-info 2026-03-12T16:48:51,995 running install_scripts 2026-03-12T16:48:52,008 creating build/bdist.linux-armv7l/wheel/bioconvert-1.2.0.dist-info/WHEEL 2026-03-12T16:48:52,011 creating '/tmp/pip-wheel-j1ableuw/.tmp-km5qm_4_/bioconvert-1.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-12T16:48:52,015 adding 'bioconvert/__init__.py' 2026-03-12T16:48:52,016 adding 'bioconvert/abi2fasta.py' 2026-03-12T16:48:52,018 adding 'bioconvert/abi2fastq.py' 2026-03-12T16:48:52,019 adding 'bioconvert/abi2qual.py' 2026-03-12T16:48:52,021 adding 'bioconvert/bam2bedgraph.py' 2026-03-12T16:48:52,022 adding 'bioconvert/bam2bigwig.py' 2026-03-12T16:48:52,024 adding 'bioconvert/bam2cov.py' 2026-03-12T16:48:52,025 adding 'bioconvert/bam2cram.py' 2026-03-12T16:48:52,027 adding 'bioconvert/bam2fasta.py' 2026-03-12T16:48:52,029 adding 'bioconvert/bam2fastq.py' 2026-03-12T16:48:52,030 adding 'bioconvert/bam2json.py' 2026-03-12T16:48:52,031 adding 'bioconvert/bam2sam.py' 2026-03-12T16:48:52,033 adding 'bioconvert/bam2tsv.py' 2026-03-12T16:48:52,034 adding 'bioconvert/bam2wiggle.py' 2026-03-12T16:48:52,036 adding 'bioconvert/bcf2vcf.py' 2026-03-12T16:48:52,037 adding 'bioconvert/bcf2wiggle.py' 2026-03-12T16:48:52,038 adding 'bioconvert/bed2wiggle.py' 2026-03-12T16:48:52,040 adding 'bioconvert/bedgraph2bigwig.py' 2026-03-12T16:48:52,041 adding 'bioconvert/bedgraph2cov.py' 2026-03-12T16:48:52,042 adding 'bioconvert/bedgraph2wiggle.py' 2026-03-12T16:48:52,044 adding 'bioconvert/bigbed2bed.py' 2026-03-12T16:48:52,045 adding 'bioconvert/bigbed2wiggle.py' 2026-03-12T16:48:52,046 adding 'bioconvert/bigwig2bedgraph.py' 2026-03-12T16:48:52,048 adding 'bioconvert/bigwig2wiggle.py' 2026-03-12T16:48:52,049 adding 'bioconvert/bplink2plink.py' 2026-03-12T16:48:52,051 adding 'bioconvert/bplink2vcf.py' 2026-03-12T16:48:52,052 adding 'bioconvert/bz22gz.py' 2026-03-12T16:48:52,053 adding 'bioconvert/clustal2fasta.py' 2026-03-12T16:48:52,055 adding 'bioconvert/clustal2nexus.py' 2026-03-12T16:48:52,056 adding 'bioconvert/clustal2phylip.py' 2026-03-12T16:48:52,058 adding 'bioconvert/clustal2stockholm.py' 2026-03-12T16:48:52,059 adding 'bioconvert/cram2bam.py' 2026-03-12T16:48:52,060 adding 'bioconvert/cram2fasta.py' 2026-03-12T16:48:52,062 adding 'bioconvert/cram2fastq.py' 2026-03-12T16:48:52,064 adding 'bioconvert/cram2sam.py' 2026-03-12T16:48:52,065 adding 'bioconvert/csv2tsv.py' 2026-03-12T16:48:52,067 adding 'bioconvert/csv2xls.py' 2026-03-12T16:48:52,068 adding 'bioconvert/dsrc2gz.py' 2026-03-12T16:48:52,070 adding 'bioconvert/embl2fasta.py' 2026-03-12T16:48:52,071 adding 'bioconvert/embl2genbank.py' 2026-03-12T16:48:52,072 adding 'bioconvert/fast52pod5.py' 2026-03-12T16:48:52,074 adding 'bioconvert/fasta2clustal.py' 2026-03-12T16:48:52,075 adding 'bioconvert/fasta2faa.py' 2026-03-12T16:48:52,077 adding 'bioconvert/fasta2fasta_agp.py' 2026-03-12T16:48:52,079 adding 'bioconvert/fasta2fastq.py' 2026-03-12T16:48:52,080 adding 'bioconvert/fasta2genbank.py' 2026-03-12T16:48:52,081 adding 'bioconvert/fasta2nexus.py' 2026-03-12T16:48:52,083 adding 'bioconvert/fasta2phylip.py' 2026-03-12T16:48:52,084 adding 'bioconvert/fasta2twobit.py' 2026-03-12T16:48:52,086 adding 'bioconvert/fasta_qual2fastq.py' 2026-03-12T16:48:52,088 adding 'bioconvert/fastq2fasta.py' 2026-03-12T16:48:52,089 adding 'bioconvert/fastq2fasta_qual.py' 2026-03-12T16:48:52,091 adding 'bioconvert/fastq2qual.py' 2026-03-12T16:48:52,092 adding 'bioconvert/genbank2embl.py' 2026-03-12T16:48:52,094 adding 'bioconvert/genbank2faa.py' 2026-03-12T16:48:52,095 adding 'bioconvert/genbank2fasta.py' 2026-03-12T16:48:52,097 adding 'bioconvert/genbank2gff3.py' 2026-03-12T16:48:52,098 adding 'bioconvert/gfa2fasta.py' 2026-03-12T16:48:52,100 adding 'bioconvert/gff22gff3.py' 2026-03-12T16:48:52,101 adding 'bioconvert/gff32gff2.py' 2026-03-12T16:48:52,102 adding 'bioconvert/gff32gtf.py' 2026-03-12T16:48:52,104 adding 'bioconvert/gml2graphml.py' 2026-03-12T16:48:52,105 adding 'bioconvert/gml2pajek.py' 2026-03-12T16:48:52,106 adding 'bioconvert/graphml2gml.py' 2026-03-12T16:48:52,108 adding 'bioconvert/graphml2pajek.py' 2026-03-12T16:48:52,109 adding 'bioconvert/gtf22gff3.py' 2026-03-12T16:48:52,110 adding 'bioconvert/gz2bz2.py' 2026-03-12T16:48:52,112 adding 'bioconvert/gz2dsrc.py' 2026-03-12T16:48:52,113 adding 'bioconvert/jaspar2transfac.py' 2026-03-12T16:48:52,115 adding 'bioconvert/json2yaml.py' 2026-03-12T16:48:52,116 adding 'bioconvert/maf2sam.py' 2026-03-12T16:48:52,117 adding 'bioconvert/mol22smiles.py' 2026-03-12T16:48:52,119 adding 'bioconvert/newick2nexus.py' 2026-03-12T16:48:52,120 adding 'bioconvert/newick2phyloxml.py' 2026-03-12T16:48:52,122 adding 'bioconvert/nexus2clustal.py' 2026-03-12T16:48:52,123 adding 'bioconvert/nexus2fasta.py' 2026-03-12T16:48:52,125 adding 'bioconvert/nexus2newick.py' 2026-03-12T16:48:52,126 adding 'bioconvert/nexus2phylip.py' 2026-03-12T16:48:52,127 adding 'bioconvert/nexus2phyloxml.py' 2026-03-12T16:48:52,129 adding 'bioconvert/ods2csv.py' 2026-03-12T16:48:52,130 adding 'bioconvert/pajek2gml.py' 2026-03-12T16:48:52,132 adding 'bioconvert/pajek2graphml.py' 2026-03-12T16:48:52,133 adding 'bioconvert/pdb2faa.py' 2026-03-12T16:48:52,134 adding 'bioconvert/pdb2smiles.py' 2026-03-12T16:48:52,136 adding 'bioconvert/phylip2clustal.py' 2026-03-12T16:48:52,137 adding 'bioconvert/phylip2fasta.py' 2026-03-12T16:48:52,139 adding 'bioconvert/phylip2nexus.py' 2026-03-12T16:48:52,140 adding 'bioconvert/phylip2stockholm.py' 2026-03-12T16:48:52,141 adding 'bioconvert/phylip2xmfa.py' 2026-03-12T16:48:52,143 adding 'bioconvert/phyloxml2newick.py' 2026-03-12T16:48:52,144 adding 'bioconvert/phyloxml2nexus.py' 2026-03-12T16:48:52,145 adding 'bioconvert/plink2bplink.py' 2026-03-12T16:48:52,147 adding 'bioconvert/plink2vcf.py' 2026-03-12T16:48:52,148 adding 'bioconvert/sam2bam.py' 2026-03-12T16:48:52,150 adding 'bioconvert/sam2cram.py' 2026-03-12T16:48:52,152 adding 'bioconvert/sam2paf.py' 2026-03-12T16:48:52,153 adding 'bioconvert/scf2fasta.py' 2026-03-12T16:48:52,155 adding 'bioconvert/scf2fastq.py' 2026-03-12T16:48:52,156 adding 'bioconvert/sdf2smiles.py' 2026-03-12T16:48:52,163 adding 'bioconvert/sra2fastq.py' 2026-03-12T16:48:52,164 adding 'bioconvert/stockholm2clustal.py' 2026-03-12T16:48:52,164 adding 'bioconvert/stockholm2phylip.py' 2026-03-12T16:48:52,165 adding 'bioconvert/transfac2jaspar.py' 2026-03-12T16:48:52,165 adding 'bioconvert/tsv2csv.py' 2026-03-12T16:48:52,166 adding 'bioconvert/twobit2fasta.py' 2026-03-12T16:48:52,167 adding 'bioconvert/vcf2bcf.py' 2026-03-12T16:48:52,167 adding 'bioconvert/vcf2bed.py' 2026-03-12T16:48:52,169 adding 'bioconvert/vcf2bplink.py' 2026-03-12T16:48:52,170 adding 'bioconvert/vcf2plink.py' 2026-03-12T16:48:52,172 adding 'bioconvert/vcf2wiggle.py' 2026-03-12T16:48:52,173 adding 'bioconvert/wig2bed.py' 2026-03-12T16:48:52,175 adding 'bioconvert/xls2csv.py' 2026-03-12T16:48:52,176 adding 'bioconvert/xlsx2csv.py' 2026-03-12T16:48:52,178 adding 'bioconvert/xmfa2phylip.py' 2026-03-12T16:48:52,179 adding 'bioconvert/yaml2json.py' 2026-03-12T16:48:52,181 adding 'bioconvert/core/__init__.py' 2026-03-12T16:48:52,185 adding 'bioconvert/core/base.py' 2026-03-12T16:48:52,187 adding 'bioconvert/core/benchmark.py' 2026-03-12T16:48:52,189 adding 'bioconvert/core/converter.py' 2026-03-12T16:48:52,191 adding 'bioconvert/core/decorators.py' 2026-03-12T16:48:52,192 adding 'bioconvert/core/downloader.py' 2026-03-12T16:48:52,193 adding 'bioconvert/core/extensions.py' 2026-03-12T16:48:52,195 adding 'bioconvert/core/graph.py' 2026-03-12T16:48:52,197 adding 'bioconvert/core/init.py' 2026-03-12T16:48:52,198 adding 'bioconvert/core/levenshtein.py' 2026-03-12T16:48:52,200 adding 'bioconvert/core/registry.py' 2026-03-12T16:48:52,201 adding 'bioconvert/core/shell.py' 2026-03-12T16:48:52,203 adding 'bioconvert/core/utils.py' 2026-03-12T16:48:52,205 adding 'bioconvert/data/README.rst' 2026-03-12T16:48:52,206 adding 'bioconvert/data/__init__.py' 2026-03-12T16:48:52,207 adding 'bioconvert/data/measles.chrom.sizes' 2026-03-12T16:48:52,208 adding 'bioconvert/data/test.bigwig' 2026-03-12T16:48:52,210 adding 'bioconvert/data/test_SP1.fq.gz' 2026-03-12T16:48:52,216 adding 'bioconvert/data/test_gfa2fasta_v1.gfa' 2026-03-12T16:48:52,217 adding 'bioconvert/data/test_measles.fa.fai' 2026-03-12T16:48:52,219 adding 'bioconvert/data/test_measles.sorted.bam' 2026-03-12T16:48:52,220 adding 'bioconvert/data/testing/__init__.py' 2026-03-12T16:48:52,222 adding 'bioconvert/io/__init__.py' 2026-03-12T16:48:52,224 adding 'bioconvert/io/fasta.py' 2026-03-12T16:48:52,227 adding 'bioconvert/io/genbank.py' 2026-03-12T16:48:52,229 adding 'bioconvert/io/gff2.py' 2026-03-12T16:48:52,231 adding 'bioconvert/io/gff3.py' 2026-03-12T16:48:52,234 adding 'bioconvert/io/maf.py' 2026-03-12T16:48:52,236 adding 'bioconvert/io/scf.py' 2026-03-12T16:48:52,238 adding 'bioconvert/misc/README.rst' 2026-03-12T16:48:52,239 adding 'bioconvert/misc/__init__.py' 2026-03-12T16:48:52,241 adding 'bioconvert/misc/cython_fastq2fasta.pyx' 2026-03-12T16:48:52,242 adding 'bioconvert/misc/fastq2fasta.c' 2026-03-12T16:48:52,244 adding 'bioconvert/misc/fastq2fasta.pl' 2026-03-12T16:48:52,246 adding 'bioconvert/misc/install_goalign.sh' 2026-03-12T16:48:52,247 adding 'bioconvert/misc/install_gotree.sh' 2026-03-12T16:48:52,249 adding 'bioconvert/scripts/__init__.py' 2026-03-12T16:48:52,254 adding 'bioconvert/scripts/converter.py' 2026-03-12T16:48:52,256 adding 'bioconvert/scripts/init_convert.py' 2026-03-12T16:48:52,258 adding 'bioconvert/scripts/stats.py' 2026-03-12T16:48:52,260 adding 'bioconvert/simulator/__init__.py' 2026-03-12T16:48:52,262 adding 'bioconvert/simulator/fasta.py' 2026-03-12T16:48:52,263 adding 'bioconvert/simulator/fastq.py' 2026-03-12T16:48:52,265 adding 'bioconvert/simulator/gfa.py' 2026-03-12T16:48:52,267 adding 'bioconvert/utils/__init__.py' 2026-03-12T16:48:52,269 adding 'bioconvert/utils/biocode/__init__.py' 2026-03-12T16:48:52,273 adding 'bioconvert/utils/biocode/annotation.py' 2026-03-12T16:48:52,275 adding 'bioconvert/utils/biocode/convert_genbank_to_gff3.py' 2026-03-12T16:48:52,280 adding 'bioconvert/utils/biocode/gff.py' 2026-03-12T16:48:52,283 adding 'bioconvert/utils/biocode/tbl.py' 2026-03-12T16:48:52,293 adding 'bioconvert/utils/biocode/things.py' 2026-03-12T16:48:52,296 adding 'bioconvert/utils/biocode/utils.py' 2026-03-12T16:48:52,307 adding 'bioconvert-1.2.0.dist-info/licenses/COPYING' 2026-03-12T16:48:52,309 adding 'doc/conf.py' 2026-03-12T16:48:52,311 adding 'doc/create_automodules_allconverters.py' 2026-03-12T16:48:52,312 adding 'doc/create_graph.py' 2026-03-12T16:48:52,314 adding 'doc/script.sh' 2026-03-12T16:48:52,315 adding 'doc/script2.sh' 2026-03-12T16:48:52,317 adding 'examples/README.txt' 2026-03-12T16:48:52,322 adding 'examples/conversion.dot' 2026-03-12T16:48:52,324 adding 'examples/plot_benchmark.py' 2026-03-12T16:48:52,325 adding 'examples/plot_graph.py' 2026-03-12T16:48:52,326 adding 'examples/plot_graph_clustered.py' 2026-03-12T16:48:52,328 adding 'examples/plot_graph_colored.py' 2026-03-12T16:48:52,329 adding 'examples/plot_methods.py' 2026-03-12T16:48:52,345 adding 'examples/test.cov' 2026-03-12T16:48:52,350 adding 'bioconvert-1.2.0.dist-info/METADATA' 2026-03-12T16:48:52,351 adding 'bioconvert-1.2.0.dist-info/WHEEL' 2026-03-12T16:48:52,352 adding 'bioconvert-1.2.0.dist-info/entry_points.txt' 2026-03-12T16:48:52,353 adding 'bioconvert-1.2.0.dist-info/top_level.txt' 2026-03-12T16:48:52,356 adding 'bioconvert-1.2.0.dist-info/RECORD' 2026-03-12T16:48:52,363 removing build/bdist.linux-armv7l/wheel 2026-03-12T16:48:52,497 Building wheel for bioconvert (pyproject.toml): finished with status 'done' 2026-03-12T16:48:52,509 Created wheel for bioconvert: filename=bioconvert-1.2.0-py3-none-any.whl size=378506 sha256=630b11e41ea50d4e7d33656e95b74d46a87df573b93348cba6c7f613b3d3b38e 2026-03-12T16:48:52,510 Stored in directory: /tmp/pip-ephem-wheel-cache-7jpjanpr/wheels/03/eb/43/d4432d30efa025679889801d18506e6a94c6aa1af42a140039 2026-03-12T16:48:52,534 Successfully built bioconvert 2026-03-12T16:48:52,554 Removed build tracker: '/tmp/pip-build-tracker-sw76le2m'