2026-03-13T10:37:16,161 Created temporary directory: /tmp/pip-ephem-wheel-cache-fj67qsgz 2026-03-13T10:37:16,164 Created temporary directory: /tmp/pip-build-tracker-_zp3w3av 2026-03-13T10:37:16,164 Initialized build tracking at /tmp/pip-build-tracker-_zp3w3av 2026-03-13T10:37:16,165 Created build tracker: /tmp/pip-build-tracker-_zp3w3av 2026-03-13T10:37:16,165 Entered build tracker: /tmp/pip-build-tracker-_zp3w3av 2026-03-13T10:37:16,166 Created temporary directory: /tmp/pip-wheel-cfpme2c_ 2026-03-13T10:37:16,169 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T10:37:16,172 Created temporary directory: /tmp/pip-ephem-wheel-cache-nbq2f06t 2026-03-13T10:37:16,194 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T10:37:16,198 2 location(s) to search for versions of goatools: 2026-03-13T10:37:16,198 * https://pypi.org/simple/goatools/ 2026-03-13T10:37:16,198 * https://www.piwheels.org/simple/goatools/ 2026-03-13T10:37:16,199 Fetching project page and analyzing links: https://pypi.org/simple/goatools/ 2026-03-13T10:37:16,199 Getting page https://pypi.org/simple/goatools/ 2026-03-13T10:37:16,201 Found index url https://pypi.org/simple 2026-03-13T10:37:16,416 Fetched page https://pypi.org/simple/goatools/ as application/vnd.pypi.simple.v1+json 2026-03-13T10:37:16,428 Found link https://files.pythonhosted.org/packages/68/9f/aac469a604a671f2fb8af43abbc9a3baf9f4b89dc121a1069b022a01d33c/goatools-0.4.7.tar.gz (from 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https://files.pythonhosted.org/packages/e8/8f/b0520563d521c670627b2b636f0480613444c04395eb95a0177269b4fb6b/goatools-1.2.3.tar.gz (from https://pypi.org/simple/goatools/), version: 1.2.3 2026-03-13T10:37:16,447 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/26/16/eea88e34534664ccac4be340e1c70763bf1277cbb20aa328a4630ce9daf8/goatools-1.2.4-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T10:37:16,448 Found link https://files.pythonhosted.org/packages/e5/0d/f95ca21e321bf9ef146885548b6d7d6f564e744c2020578575fda9db8d06/goatools-1.2.4.tar.gz (from https://pypi.org/simple/goatools/), version: 1.2.4 2026-03-13T10:37:16,449 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/60/6d/3abdbd7b013c86b700c66858f105148a001108715a1ae7efa967594ae2d2/goatools-1.3.1-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T10:37:16,449 Found link 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as text/html 2026-03-13T10:37:16,646 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.5.2-py3-none-any.whl#sha256=b089e8091842d5e4225c3dae2874d138b69633746178b4d016a834feaaa6271a (from https://www.piwheels.org/simple/goatools/) 2026-03-13T10:37:16,647 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.5.1-py3-none-any.whl#sha256=549d67bb304ba614e36de4f7abd0facb4e673974d15270d38267f0f3d3174d9d (from https://www.piwheels.org/simple/goatools/) 2026-03-13T10:37:16,648 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.4.12-py3-none-any.whl#sha256=f38fe6106431f6eb4509787df74288d708ff5c69e9ec8a15680e8e8fdb16c526 (from https://www.piwheels.org/simple/goatools/) 2026-03-13T10:37:16,649 Skipping link: No binaries permitted for goatools: 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https://archive1.piwheels.org/simple/goatools/goatools-0.4.11-py3-none-any.whl#sha256=1b3be88f83abdf85ccba25f972c434227df19285d0ef2941ecdd3906c2e884fe (from https://www.piwheels.org/simple/goatools/) 2026-03-13T10:37:16,666 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-0.4.7-py3-none-any.whl#sha256=5f6053c64d50dc189971e7197bed72056cb5d64f38bf95dd4b2bb2b65b06b116 (from https://www.piwheels.org/simple/goatools/) 2026-03-13T10:37:16,666 Skipping link: not a file: https://www.piwheels.org/simple/goatools/ 2026-03-13T10:37:16,667 Skipping link: not a file: https://pypi.org/simple/goatools/ 2026-03-13T10:37:16,691 Given no hashes to check 1 links for project 'goatools': discarding no candidates 2026-03-13T10:37:16,709 Collecting goatools==1.6.1 2026-03-13T10:37:16,711 Created temporary directory: /tmp/pip-unpack-v28ioe4t 2026-03-13T10:37:16,947 Downloading goatools-1.6.1.tar.gz (17.8 MB) 2026-03-13T10:37:23,432 Added goatools==1.6.1 from https://files.pythonhosted.org/packages/8a/c8/35a872b65e1d668dd1a6c6bf27e0078448ae3b7c76357ae5ed912b1b6c27/goatools-1.6.1.tar.gz to build tracker '/tmp/pip-build-tracker-_zp3w3av' 2026-03-13T10:37:23,440 Created temporary directory: /tmp/pip-build-env-vrczq93w 2026-03-13T10:37:23,444 Installing build dependencies: started 2026-03-13T10:37:23,446 Running command pip subprocess to install build dependencies 2026-03-13T10:37:24,623 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T10:37:25,232 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T10:37:25,255 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T10:37:26,992 Collecting setuptools 2026-03-13T10:37:27,090 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-13T10:37:27,480 Collecting setuptools_scm[toml] 2026-03-13T10:37:27,502 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-03-13T10:37:27,653 Collecting setuptools_scm_git_archive 2026-03-13T10:37:27,664 Downloading https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl (3.3 kB) 2026-03-13T10:37:27,890 Collecting wheel 2026-03-13T10:37:27,904 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T10:37:28,096 Collecting packaging>=20 2026-03-13T10:37:28,113 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T10:37:31,104 Installing collected packages: setuptools_scm_git_archive, setuptools, packaging, wheel, setuptools_scm 2026-03-13T10:37:35,057 Creating /tmp/pip-build-env-vrczq93w/overlay/local/bin 2026-03-13T10:37:35,059 changing mode of /tmp/pip-build-env-vrczq93w/overlay/local/bin/wheel to 755 2026-03-13T10:37:35,329 changing mode of /tmp/pip-build-env-vrczq93w/overlay/local/bin/setuptools-scm to 755 2026-03-13T10:37:35,363 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools_scm-9.2.2 setuptools_scm_git_archive-1.4.1 wheel-0.46.3 2026-03-13T10:37:35,651 Installing build dependencies: finished with status 'done' 2026-03-13T10:37:35,658 Getting requirements to build wheel: started 2026-03-13T10:37:35,659 Running command Getting requirements to build wheel 2026-03-13T10:37:36,453 /tmp/pip-build-env-vrczq93w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T10:37:36,453 !! 2026-03-13T10:37:36,454 ******************************************************************************** 2026-03-13T10:37:36,454 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T10:37:36,456 License :: OSI Approved :: BSD License 2026-03-13T10:37:36,457 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:37:36,458 ******************************************************************************** 2026-03-13T10:37:36,459 !! 2026-03-13T10:37:36,459 self._finalize_license_expression() 2026-03-13T10:37:36,592 running egg_info 2026-03-13T10:37:36,601 writing goatools.egg-info/PKG-INFO 2026-03-13T10:37:36,819 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T10:37:36,821 writing requirements to goatools.egg-info/requires.txt 2026-03-13T10:37:36,823 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T10:37:37,006 listing git files failed - pretending there aren't any 2026-03-13T10:37:37,012 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:37,026 reading manifest template 'MANIFEST.in' 2026-03-13T10:37:37,028 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T10:37:37,029 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T10:37:37,030 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T10:37:37,030 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T10:37:37,031 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T10:37:37,032 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T10:37:37,033 warning: no previously-included files found matching '.*' 2026-03-13T10:37:37,034 adding license file 'LICENSE' 2026-03-13T10:37:37,043 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:37,137 Getting requirements to build wheel: finished with status 'done' 2026-03-13T10:37:37,140 Created temporary directory: /tmp/pip-modern-metadata-fjnzey6c 2026-03-13T10:37:37,143 Preparing metadata (pyproject.toml): started 2026-03-13T10:37:37,144 Running command Preparing metadata (pyproject.toml) 2026-03-13T10:37:37,795 /tmp/pip-build-env-vrczq93w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T10:37:37,795 !! 2026-03-13T10:37:37,796 ******************************************************************************** 2026-03-13T10:37:37,797 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T10:37:37,798 License :: OSI Approved :: BSD License 2026-03-13T10:37:37,798 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:37:37,799 ******************************************************************************** 2026-03-13T10:37:37,800 !! 2026-03-13T10:37:37,800 self._finalize_license_expression() 2026-03-13T10:37:37,826 running dist_info 2026-03-13T10:37:37,839 creating /tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info 2026-03-13T10:37:37,840 writing /tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/PKG-INFO 2026-03-13T10:37:37,844 writing dependency_links to /tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/dependency_links.txt 2026-03-13T10:37:37,846 writing requirements to /tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/requires.txt 2026-03-13T10:37:37,847 writing top-level names to /tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/top_level.txt 2026-03-13T10:37:37,848 writing manifest file '/tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:37,927 listing git files failed - pretending there aren't any 2026-03-13T10:37:37,932 reading manifest file '/tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:37,934 reading manifest template 'MANIFEST.in' 2026-03-13T10:37:37,935 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T10:37:37,936 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T10:37:37,937 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T10:37:37,937 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T10:37:37,938 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T10:37:37,939 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T10:37:37,940 warning: no previously-included files found matching '.*' 2026-03-13T10:37:37,940 adding license file 'LICENSE' 2026-03-13T10:37:37,947 writing manifest file '/tmp/pip-modern-metadata-fjnzey6c/goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:37,948 creating '/tmp/pip-modern-metadata-fjnzey6c/goatools-1.6.1.dist-info' 2026-03-13T10:37:38,088 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T10:37:38,093 Source in /tmp/pip-wheel-cfpme2c_/goatools_a1ac600b90ba4f948c260b5df1489592 has version 1.6.1, which satisfies requirement goatools==1.6.1 from https://files.pythonhosted.org/packages/8a/c8/35a872b65e1d668dd1a6c6bf27e0078448ae3b7c76357ae5ed912b1b6c27/goatools-1.6.1.tar.gz 2026-03-13T10:37:38,094 Removed goatools==1.6.1 from https://files.pythonhosted.org/packages/8a/c8/35a872b65e1d668dd1a6c6bf27e0078448ae3b7c76357ae5ed912b1b6c27/goatools-1.6.1.tar.gz from build tracker '/tmp/pip-build-tracker-_zp3w3av' 2026-03-13T10:37:38,100 Created temporary directory: /tmp/pip-unpack-7co02bgl 2026-03-13T10:37:38,100 Building wheels for collected packages: goatools 2026-03-13T10:37:38,105 Created temporary directory: /tmp/pip-wheel-bjablgkd 2026-03-13T10:37:38,106 Destination directory: /tmp/pip-wheel-bjablgkd 2026-03-13T10:37:38,108 Building wheel for goatools (pyproject.toml): started 2026-03-13T10:37:38,110 Running command Building wheel for goatools (pyproject.toml) 2026-03-13T10:37:38,706 /tmp/pip-build-env-vrczq93w/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T10:37:38,706 !! 2026-03-13T10:37:38,707 ******************************************************************************** 2026-03-13T10:37:38,707 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T10:37:38,708 License :: OSI Approved :: BSD License 2026-03-13T10:37:38,709 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:37:38,709 ******************************************************************************** 2026-03-13T10:37:38,710 !! 2026-03-13T10:37:38,711 self._finalize_license_expression() 2026-03-13T10:37:38,736 running bdist_wheel 2026-03-13T10:37:38,770 running build 2026-03-13T10:37:38,771 running build_py 2026-03-13T10:37:38,782 creating build/lib/goatools 2026-03-13T10:37:38,784 copying goatools/evidence_codes.py -> build/lib/goatools 2026-03-13T10:37:38,786 copying goatools/version.py -> build/lib/goatools 2026-03-13T10:37:38,788 copying goatools/semantic.py -> build/lib/goatools 2026-03-13T10:37:38,790 copying goatools/obo_parser.py -> build/lib/goatools 2026-03-13T10:37:38,793 copying goatools/utils.py -> build/lib/goatools 2026-03-13T10:37:38,795 copying goatools/statsdescribe.py -> build/lib/goatools 2026-03-13T10:37:38,797 copying goatools/godag_obosm.py -> build/lib/goatools 2026-03-13T10:37:38,799 copying goatools/wr_tbl_class.py -> build/lib/goatools 2026-03-13T10:37:38,801 copying goatools/ratio.py -> build/lib/goatools 2026-03-13T10:37:38,803 copying goatools/nt_utils.py -> build/lib/goatools 2026-03-13T10:37:38,805 copying goatools/go_enrichment.py -> build/lib/goatools 2026-03-13T10:37:38,807 copying goatools/godag_small.py -> build/lib/goatools 2026-03-13T10:37:38,809 copying goatools/randseed.py -> build/lib/goatools 2026-03-13T10:37:38,811 copying goatools/base.py -> build/lib/goatools 2026-03-13T10:37:38,813 copying goatools/godag_plot.py -> build/lib/goatools 2026-03-13T10:37:38,815 copying goatools/mapslim.py -> build/lib/goatools 2026-03-13T10:37:38,817 copying goatools/multiple_testing.py -> build/lib/goatools 2026-03-13T10:37:38,819 copying goatools/obo_tasks.py -> build/lib/goatools 2026-03-13T10:37:38,821 copying goatools/associations.py -> build/lib/goatools 2026-03-13T10:37:38,824 copying goatools/__init__.py -> build/lib/goatools 2026-03-13T10:37:38,825 copying goatools/pvalcalc.py -> build/lib/goatools 2026-03-13T10:37:38,827 copying goatools/wr_tbl.py -> build/lib/goatools 2026-03-13T10:37:38,829 copying goatools/go_search.py -> build/lib/goatools 2026-03-13T10:37:38,832 creating build/lib/goatools/godag 2026-03-13T10:37:38,833 copying goatools/godag/consts.py -> build/lib/goatools/godag 2026-03-13T10:37:38,835 copying goatools/godag/relationship_str.py -> build/lib/goatools/godag 2026-03-13T10:37:38,836 copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag 2026-03-13T10:37:38,839 copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag 2026-03-13T10:37:38,840 copying goatools/godag/prttime.py -> build/lib/goatools/godag 2026-03-13T10:37:38,842 copying goatools/godag/go_tasks.py -> build/lib/goatools/godag 2026-03-13T10:37:38,844 copying goatools/godag/prtfncs.py -> build/lib/goatools/godag 2026-03-13T10:37:38,846 copying goatools/godag/typedef.py -> build/lib/goatools/godag 2026-03-13T10:37:38,848 copying goatools/godag/reldepth.py -> build/lib/goatools/godag 2026-03-13T10:37:38,850 copying goatools/godag/__init__.py -> build/lib/goatools/godag 2026-03-13T10:37:38,853 creating build/lib/goatools/gosubdag 2026-03-13T10:37:38,854 copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,856 copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,858 copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,860 copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,861 copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,863 copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,865 copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,867 copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,870 copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,871 copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag 2026-03-13T10:37:38,874 creating build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,875 copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,877 copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,879 copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,881 copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,883 copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,885 copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,887 copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,889 copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot 2026-03-13T10:37:38,891 creating build/lib/goatools/gosubdag/rpt 2026-03-13T10:37:38,892 copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T10:37:38,895 copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T10:37:38,897 copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T10:37:38,900 creating build/lib/goatools/test_data 2026-03-13T10:37:38,901 copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,068 copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,199 copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,201 copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,308 copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,415 copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,507 copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,625 copying goatools/test_data/gafs.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,627 copying goatools/test_data/checks.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,629 copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,639 copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T10:37:39,998 copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,091 copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,409 copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,411 copying goatools/test_data/sorter.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,414 copying goatools/test_data/__init__.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,416 copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data 2026-03-13T10:37:40,624 copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data 2026-03-13T10:37:41,147 copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data 2026-03-13T10:37:41,316 creating build/lib/goatools/test_data/sections 2026-03-13T10:37:41,322 copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections 2026-03-13T10:37:41,327 copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections 2026-03-13T10:37:41,330 copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections 2026-03-13T10:37:41,332 copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections 2026-03-13T10:37:41,334 creating build/lib/goatools/test_data/cli 2026-03-13T10:37:41,335 copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli 2026-03-13T10:37:41,337 copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli 2026-03-13T10:37:41,340 creating build/lib/goatools/cli 2026-03-13T10:37:41,341 copying goatools/cli/gos_get.py -> build/lib/goatools/cli 2026-03-13T10:37:41,343 copying goatools/cli/compare_gos.py -> build/lib/goatools/cli 2026-03-13T10:37:41,346 copying goatools/cli/grouped.py -> build/lib/goatools/cli 2026-03-13T10:37:41,348 copying goatools/cli/wr_sections.py -> build/lib/goatools/cli 2026-03-13T10:37:41,350 copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli 2026-03-13T10:37:41,353 copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli 2026-03-13T10:37:41,355 copying goatools/cli/prt_terms.py -> build/lib/goatools/cli 2026-03-13T10:37:41,357 copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli 2026-03-13T10:37:41,360 copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli 2026-03-13T10:37:41,363 copying goatools/cli/__init__.py -> build/lib/goatools/cli 2026-03-13T10:37:41,365 copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli 2026-03-13T10:37:41,368 creating build/lib/goatools/rpt 2026-03-13T10:37:41,369 copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,372 copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,374 copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,377 copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,379 copying goatools/rpt/__init__.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,381 copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt 2026-03-13T10:37:41,384 creating build/lib/goatools/anno 2026-03-13T10:37:41,385 copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno 2026-03-13T10:37:41,387 copying goatools/anno/eco2group.py -> build/lib/goatools/anno 2026-03-13T10:37:41,390 copying goatools/anno/broad_gos.py -> build/lib/goatools/anno 2026-03-13T10:37:41,392 copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno 2026-03-13T10:37:41,394 copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno 2026-03-13T10:37:41,396 copying goatools/anno/factory.py -> build/lib/goatools/anno 2026-03-13T10:37:41,398 copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno 2026-03-13T10:37:41,400 copying goatools/anno/opts.py -> build/lib/goatools/anno 2026-03-13T10:37:41,402 copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno 2026-03-13T10:37:41,404 copying goatools/anno/update_association.py -> build/lib/goatools/anno 2026-03-13T10:37:41,406 copying goatools/anno/__init__.py -> build/lib/goatools/anno 2026-03-13T10:37:41,408 copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno 2026-03-13T10:37:41,411 creating build/lib/goatools/anno/init 2026-03-13T10:37:41,412 copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,414 copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,416 copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,418 copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,420 copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,422 copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init 2026-03-13T10:37:41,425 creating build/lib/goatools/anno/extensions 2026-03-13T10:37:41,426 copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions 2026-03-13T10:37:41,428 copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions 2026-03-13T10:37:41,430 copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions 2026-03-13T10:37:41,431 copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions 2026-03-13T10:37:41,434 creating build/lib/goatools/goea 2026-03-13T10:37:41,435 copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea 2026-03-13T10:37:41,436 copying goatools/goea/__init__.py -> build/lib/goatools/goea 2026-03-13T10:37:41,439 creating build/lib/goatools/grouper 2026-03-13T10:37:41,440 copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,442 copying goatools/grouper/utils.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,444 copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,446 copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,448 copying goatools/grouper/colors.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,450 copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,452 copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,454 copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,456 copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,459 copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,461 copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,463 copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,465 copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,467 copying goatools/grouper/sorter.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,469 copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,471 copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,474 copying goatools/grouper/__init__.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,475 copying goatools/grouper/tasks.py -> build/lib/goatools/grouper 2026-03-13T10:37:41,478 creating build/lib/goatools/parsers 2026-03-13T10:37:41,479 copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers 2026-03-13T10:37:41,481 copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers 2026-03-13T10:37:41,484 copying goatools/parsers/__init__.py -> build/lib/goatools/parsers 2026-03-13T10:37:41,486 creating build/lib/goatools/semsim 2026-03-13T10:37:41,487 copying goatools/semsim/__init__.py -> build/lib/goatools/semsim 2026-03-13T10:37:41,489 creating build/lib/goatools/semsim/termwise 2026-03-13T10:37:41,490 copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise 2026-03-13T10:37:41,492 copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise 2026-03-13T10:37:41,494 copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise 2026-03-13T10:37:41,496 running egg_info 2026-03-13T10:37:41,509 writing goatools.egg-info/PKG-INFO 2026-03-13T10:37:41,512 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T10:37:41,514 writing requirements to goatools.egg-info/requires.txt 2026-03-13T10:37:41,515 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T10:37:41,568 listing git files failed - pretending there aren't any 2026-03-13T10:37:41,572 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:41,583 reading manifest template 'MANIFEST.in' 2026-03-13T10:37:41,585 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T10:37:41,586 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T10:37:41,587 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T10:37:41,587 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T10:37:41,588 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T10:37:41,589 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T10:37:41,590 warning: no previously-included files found matching '.*' 2026-03-13T10:37:41,591 adding license file 'LICENSE' 2026-03-13T10:37:41,600 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T10:37:41,604 /tmp/pip-build-env-vrczq93w/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. 2026-03-13T10:37:41,605 !! 2026-03-13T10:37:41,606 ******************************************************************************** 2026-03-13T10:37:41,606 ############################ 2026-03-13T10:37:41,607 # Package would be ignored # 2026-03-13T10:37:41,607 ############################ 2026-03-13T10:37:41,608 Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], 2026-03-13T10:37:41,608 but it is absent from setuptools' `packages` configuration. 2026-03-13T10:37:41,609 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T10:37:41,610 package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added 2026-03-13T10:37:41,611 to the `packages` configuration field. 2026-03-13T10:37:41,612 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T10:37:41,612 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T10:37:41,613 instead of `find_packages(...)`/`find:`). 2026-03-13T10:37:41,614 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T10:37:41,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T10:37:41,616 If you don't want 'goatools.test_data.nbt_3102' to be distributed and are 2026-03-13T10:37:41,616 already explicitly excluding 'goatools.test_data.nbt_3102' via 2026-03-13T10:37:41,617 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T10:37:41,617 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T10:37:41,618 combination with a more fine grained `package-data` configuration. 2026-03-13T10:37:41,619 You can read more about "package data files" on setuptools documentation page: 2026-03-13T10:37:41,620 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T10:37:41,621 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T10:37:41,622 even if it does not contain any `.py` files. 2026-03-13T10:37:41,622 On the other hand, currently there is no concept of package data 2026-03-13T10:37:41,623 directory, all directories are treated like packages. 2026-03-13T10:37:41,623 ******************************************************************************** 2026-03-13T10:37:41,625 !! 2026-03-13T10:37:41,625 check.warn(importable) 2026-03-13T10:37:41,626 copying goatools/.gitignore -> build/lib/goatools 2026-03-13T10:37:41,626 creating build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,627 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,628 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,628 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,629 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,632 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,635 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,638 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T10:37:41,650 running build_scripts 2026-03-13T10:37:41,650 creating build/scripts-3.11 2026-03-13T10:37:41,652 copying and adjusting scripts/wr_sections.py -> build/scripts-3.11 2026-03-13T10:37:41,653 copying and adjusting scripts/prt_terms.py -> build/scripts-3.11 2026-03-13T10:37:41,655 copying and adjusting scripts/go_plot.py -> build/scripts-3.11 2026-03-13T10:37:41,656 copying and adjusting scripts/compare_gos.py -> build/scripts-3.11 2026-03-13T10:37:41,657 copying and adjusting scripts/wr_hier.py -> build/scripts-3.11 2026-03-13T10:37:41,659 copying and adjusting scripts/map_to_slim.py -> build/scripts-3.11 2026-03-13T10:37:41,661 copying and adjusting scripts/ncbi_gene_results_to_python.py -> build/scripts-3.11 2026-03-13T10:37:41,662 copying and adjusting scripts/plot_go_term.py -> build/scripts-3.11 2026-03-13T10:37:41,664 copying scripts/fetch_associations.py -> build/scripts-3.11 2026-03-13T10:37:41,666 copying and adjusting scripts/find_enrichment.py -> build/scripts-3.11 2026-03-13T10:37:41,667 changing mode of build/scripts-3.11/wr_sections.py from 644 to 755 2026-03-13T10:37:41,668 changing mode of build/scripts-3.11/prt_terms.py from 644 to 755 2026-03-13T10:37:41,668 changing mode of build/scripts-3.11/go_plot.py from 644 to 755 2026-03-13T10:37:41,669 changing mode of build/scripts-3.11/compare_gos.py from 644 to 755 2026-03-13T10:37:41,669 changing mode of build/scripts-3.11/wr_hier.py from 644 to 755 2026-03-13T10:37:41,670 changing mode of build/scripts-3.11/map_to_slim.py from 644 to 755 2026-03-13T10:37:41,670 changing mode of build/scripts-3.11/ncbi_gene_results_to_python.py from 644 to 755 2026-03-13T10:37:41,671 changing mode of build/scripts-3.11/plot_go_term.py from 644 to 755 2026-03-13T10:37:41,671 changing mode of build/scripts-3.11/find_enrichment.py from 644 to 755 2026-03-13T10:37:41,686 installing to build/bdist.linux-armv7l/wheel 2026-03-13T10:37:41,687 running install 2026-03-13T10:37:41,710 running install_lib 2026-03-13T10:37:41,720 creating build/bdist.linux-armv7l/wheel 2026-03-13T10:37:41,723 creating build/bdist.linux-armv7l/wheel/goatools 2026-03-13T10:37:41,724 copying build/lib/goatools/evidence_codes.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:41,727 copying build/lib/goatools/version.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:41,730 copying build/lib/goatools/semantic.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:41,732 copying build/lib/goatools/obo_parser.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:41,736 creating build/bdist.linux-armv7l/wheel/goatools/test_data 2026-03-13T10:37:41,738 creating build/bdist.linux-armv7l/wheel/goatools/test_data/sections 2026-03-13T10:37:41,740 copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T10:37:41,743 copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T10:37:41,746 copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T10:37:41,749 copying build/lib/goatools/test_data/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T10:37:41,751 copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:41,934 copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,006 copying build/lib/goatools/test_data/nature3102_goea.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,008 copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,121 copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,292 copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,387 copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,497 creating build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 2026-03-13T10:37:42,498 copying build/lib/goatools/test_data/nbt_3102/README.md -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,501 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,504 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,506 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,509 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,513 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,516 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T10:37:42,517 copying build/lib/goatools/test_data/gafs.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,520 copying build/lib/goatools/test_data/checks.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,522 copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,595 copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,799 copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:42,928 copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:43,206 copying build/lib/goatools/test_data/wr_subobo.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:43,208 copying build/lib/goatools/test_data/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:43,211 creating build/bdist.linux-armv7l/wheel/goatools/test_data/cli 2026-03-13T10:37:43,212 copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T10:37:43,214 copying build/lib/goatools/test_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T10:37:43,216 copying build/lib/goatools/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:43,218 copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:43,308 copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:44,327 copying build/lib/goatools/test_data/godag_timed.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T10:37:44,329 copying build/lib/goatools/utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,331 creating build/bdist.linux-armv7l/wheel/goatools/godag 2026-03-13T10:37:44,332 copying build/lib/goatools/godag/consts.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,334 copying build/lib/goatools/godag/relationship_str.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,336 copying build/lib/goatools/godag/obo_optional_attributes.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,338 copying build/lib/goatools/godag/relationship_combos.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,340 copying build/lib/goatools/godag/prttime.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,343 copying build/lib/goatools/godag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,345 copying build/lib/goatools/godag/prtfncs.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,347 copying build/lib/goatools/godag/typedef.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,349 copying build/lib/goatools/godag/reldepth.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,351 copying build/lib/goatools/godag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T10:37:44,353 copying build/lib/goatools/statsdescribe.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,356 creating build/bdist.linux-armv7l/wheel/goatools/rpt 2026-03-13T10:37:44,357 copying build/lib/goatools/rpt/write_hierarchy_base.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,359 copying build/lib/goatools/rpt/nts_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,361 copying build/lib/goatools/rpt/goea_nt_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,363 copying build/lib/goatools/rpt/rpt_lev_depth.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,365 copying build/lib/goatools/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,367 copying build/lib/goatools/rpt/prtfmt.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T10:37:44,370 copying build/lib/goatools/godag_obosm.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,371 copying build/lib/goatools/wr_tbl_class.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,374 copying build/lib/goatools/ratio.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,376 creating build/bdist.linux-armv7l/wheel/goatools/parsers 2026-03-13T10:37:44,377 copying build/lib/goatools/parsers/david_chart.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T10:37:44,379 copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T10:37:44,382 copying build/lib/goatools/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T10:37:44,384 copying build/lib/goatools/nt_utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,386 copying build/lib/goatools/go_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,389 copying build/lib/goatools/godag_small.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,391 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag 2026-03-13T10:37:44,393 copying build/lib/goatools/gosubdag/gosubdag.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,395 copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,397 copying build/lib/goatools/gosubdag/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,399 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/rpt 2026-03-13T10:37:44,400 copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T10:37:44,403 copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T10:37:44,405 copying build/lib/goatools/gosubdag/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T10:37:44,407 copying build/lib/goatools/gosubdag/go_most_specific.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,409 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/plot 2026-03-13T10:37:44,410 copying build/lib/goatools/gosubdag/plot/go2color.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,413 copying build/lib/goatools/gosubdag/plot/go_node.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,415 copying build/lib/goatools/gosubdag/plot/go_edge.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,417 copying build/lib/goatools/gosubdag/plot/goea_results.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,419 copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,421 copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,424 copying build/lib/goatools/gosubdag/plot/plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,426 copying build/lib/goatools/gosubdag/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T10:37:44,428 copying build/lib/goatools/gosubdag/godag_rcnt.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,430 copying build/lib/goatools/gosubdag/go_edges.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,432 copying build/lib/goatools/gosubdag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,435 copying build/lib/goatools/gosubdag/gosubdag_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,437 copying build/lib/goatools/gosubdag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,439 copying build/lib/goatools/gosubdag/go_paths.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T10:37:44,441 copying build/lib/goatools/randseed.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,442 copying build/lib/goatools/base.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,445 copying build/lib/goatools/godag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,447 creating build/bdist.linux-armv7l/wheel/goatools/semsim 2026-03-13T10:37:44,449 creating build/bdist.linux-armv7l/wheel/goatools/semsim/termwise 2026-03-13T10:37:44,450 copying build/lib/goatools/semsim/termwise/wang.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T10:37:44,453 copying build/lib/goatools/semsim/termwise/dag_a.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T10:37:44,455 copying build/lib/goatools/semsim/termwise/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T10:37:44,456 copying build/lib/goatools/semsim/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim 2026-03-13T10:37:44,459 copying build/lib/goatools/mapslim.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,460 copying build/lib/goatools/multiple_testing.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,463 creating build/bdist.linux-armv7l/wheel/goatools/anno 2026-03-13T10:37:44,465 creating build/bdist.linux-armv7l/wheel/goatools/anno/init 2026-03-13T10:37:44,466 copying build/lib/goatools/anno/init/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,468 copying build/lib/goatools/anno/init/reader_genetogo.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,470 copying build/lib/goatools/anno/init/reader_gaf.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,473 copying build/lib/goatools/anno/init/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,475 copying build/lib/goatools/anno/init/reader_idtogos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,477 copying build/lib/goatools/anno/init/reader_gpad.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T10:37:44,480 creating build/bdist.linux-armv7l/wheel/goatools/anno/extensions 2026-03-13T10:37:44,481 copying build/lib/goatools/anno/extensions/extension.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T10:37:44,483 copying build/lib/goatools/anno/extensions/extensions.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T10:37:44,485 copying build/lib/goatools/anno/extensions/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T10:37:44,487 copying build/lib/goatools/anno/extensions/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T10:37:44,488 copying build/lib/goatools/anno/dnld_ebi_goa.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,490 copying build/lib/goatools/anno/eco2group.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,493 copying build/lib/goatools/anno/broad_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,496 copying build/lib/goatools/anno/idtogos_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,498 copying build/lib/goatools/anno/gpad_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,500 copying build/lib/goatools/anno/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,501 copying build/lib/goatools/anno/gaf_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,504 copying build/lib/goatools/anno/opts.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,506 copying build/lib/goatools/anno/genetogo_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,508 copying build/lib/goatools/anno/update_association.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,511 copying build/lib/goatools/anno/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,512 copying build/lib/goatools/anno/annoreader_base.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T10:37:44,515 copying build/lib/goatools/obo_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,517 copying build/lib/goatools/associations.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,520 creating build/bdist.linux-armv7l/wheel/goatools/cli 2026-03-13T10:37:44,521 copying build/lib/goatools/cli/gos_get.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,523 copying build/lib/goatools/cli/compare_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,526 copying build/lib/goatools/cli/grouped.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,528 copying build/lib/goatools/cli/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,530 copying build/lib/goatools/cli/wr_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,532 copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,534 copying build/lib/goatools/cli/prt_terms.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,536 copying build/lib/goatools/cli/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,539 copying build/lib/goatools/cli/find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,542 copying build/lib/goatools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,544 copying build/lib/goatools/cli/docopt_parse.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T10:37:44,545 copying build/lib/goatools/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,548 creating build/bdist.linux-armv7l/wheel/goatools/grouper 2026-03-13T10:37:44,549 copying build/lib/goatools/grouper/grprplt.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,551 copying build/lib/goatools/grouper/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,553 copying build/lib/goatools/grouper/wrxlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,555 copying build/lib/goatools/grouper/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,557 copying build/lib/goatools/grouper/colors.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,559 copying build/lib/goatools/grouper/grprdflts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,561 copying build/lib/goatools/grouper/hdrgos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,563 copying build/lib/goatools/grouper/grprobj_init.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,565 copying build/lib/goatools/grouper/grprobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,568 copying build/lib/goatools/grouper/read_goids.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,570 copying build/lib/goatools/grouper/aart_geneproducts_one.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,572 copying build/lib/goatools/grouper/sorter_nts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,574 copying build/lib/goatools/grouper/aart_geneproducts_all.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,577 copying build/lib/goatools/grouper/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,579 copying build/lib/goatools/grouper/sorter_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,581 copying build/lib/goatools/grouper/plotobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,584 copying build/lib/goatools/grouper/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,585 copying build/lib/goatools/grouper/tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T10:37:44,588 copying build/lib/goatools/pvalcalc.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,590 copying build/lib/goatools/wr_tbl.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,592 creating build/bdist.linux-armv7l/wheel/goatools/goea 2026-03-13T10:37:44,594 copying build/lib/goatools/goea/go_enrichment_ns.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T10:37:44,596 copying build/lib/goatools/goea/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T10:37:44,598 copying build/lib/goatools/go_search.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,600 copying build/lib/goatools/.gitignore -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T10:37:44,601 running install_egg_info 2026-03-13T10:37:44,613 Copying goatools.egg-info to build/bdist.linux-armv7l/wheel/./goatools-1.6.1-py3.11.egg-info 2026-03-13T10:37:44,624 running install_scripts 2026-03-13T10:37:44,625 creating build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,627 copying build/scripts-3.11/wr_hier.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,629 copying build/scripts-3.11/compare_gos.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,631 copying build/scripts-3.11/plot_go_term.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,633 copying build/scripts-3.11/wr_sections.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,634 copying build/scripts-3.11/map_to_slim.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,636 copying build/scripts-3.11/ncbi_gene_results_to_python.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,638 copying build/scripts-3.11/prt_terms.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,640 copying build/scripts-3.11/go_plot.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,641 copying build/scripts-3.11/find_enrichment.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,643 copying build/scripts-3.11/fetch_associations.py -> build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts 2026-03-13T10:37:44,645 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/wr_hier.py to 755 2026-03-13T10:37:44,645 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/compare_gos.py to 755 2026-03-13T10:37:44,646 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/plot_go_term.py to 755 2026-03-13T10:37:44,646 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/wr_sections.py to 755 2026-03-13T10:37:44,647 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/map_to_slim.py to 755 2026-03-13T10:37:44,647 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/ncbi_gene_results_to_python.py to 755 2026-03-13T10:37:44,648 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/prt_terms.py to 755 2026-03-13T10:37:44,648 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/go_plot.py to 755 2026-03-13T10:37:44,649 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/find_enrichment.py to 755 2026-03-13T10:37:44,649 changing mode of build/bdist.linux-armv7l/wheel/goatools-1.6.1.data/scripts/fetch_associations.py to 755 2026-03-13T10:37:44,659 creating build/bdist.linux-armv7l/wheel/goatools-1.6.1.dist-info/WHEEL 2026-03-13T10:37:44,662 creating '/tmp/pip-wheel-bjablgkd/.tmp-1e5kizl6/goatools-1.6.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T10:37:44,665 adding 'goatools/.gitignore' 2026-03-13T10:37:44,666 adding 'goatools/__init__.py' 2026-03-13T10:37:44,668 adding 'goatools/associations.py' 2026-03-13T10:37:44,670 adding 'goatools/base.py' 2026-03-13T10:37:44,672 adding 'goatools/evidence_codes.py' 2026-03-13T10:37:44,676 adding 'goatools/go_enrichment.py' 2026-03-13T10:37:44,677 adding 'goatools/go_search.py' 2026-03-13T10:37:44,679 adding 'goatools/godag_obosm.py' 2026-03-13T10:37:44,681 adding 'goatools/godag_plot.py' 2026-03-13T10:37:44,683 adding 'goatools/godag_small.py' 2026-03-13T10:37:44,684 adding 'goatools/mapslim.py' 2026-03-13T10:37:44,686 adding 'goatools/multiple_testing.py' 2026-03-13T10:37:44,687 adding 'goatools/nt_utils.py' 2026-03-13T10:37:44,691 adding 'goatools/obo_parser.py' 2026-03-13T10:37:44,692 adding 'goatools/obo_tasks.py' 2026-03-13T10:37:44,694 adding 'goatools/pvalcalc.py' 2026-03-13T10:37:44,695 adding 'goatools/randseed.py' 2026-03-13T10:37:44,697 adding 'goatools/ratio.py' 2026-03-13T10:37:44,699 adding 'goatools/semantic.py' 2026-03-13T10:37:44,700 adding 'goatools/statsdescribe.py' 2026-03-13T10:37:44,701 adding 'goatools/utils.py' 2026-03-13T10:37:44,703 adding 'goatools/version.py' 2026-03-13T10:37:44,705 adding 'goatools/wr_tbl.py' 2026-03-13T10:37:44,707 adding 'goatools/wr_tbl_class.py' 2026-03-13T10:37:44,709 adding 'goatools/anno/__init__.py' 2026-03-13T10:37:44,711 adding 'goatools/anno/annoreader_base.py' 2026-03-13T10:37:44,713 adding 'goatools/anno/broad_gos.py' 2026-03-13T10:37:44,714 adding 'goatools/anno/dnld_ebi_goa.py' 2026-03-13T10:37:44,717 adding 'goatools/anno/eco2group.py' 2026-03-13T10:37:44,718 adding 'goatools/anno/factory.py' 2026-03-13T10:37:44,720 adding 'goatools/anno/gaf_reader.py' 2026-03-13T10:37:44,721 adding 'goatools/anno/genetogo_reader.py' 2026-03-13T10:37:44,723 adding 'goatools/anno/gpad_reader.py' 2026-03-13T10:37:44,724 adding 'goatools/anno/idtogos_reader.py' 2026-03-13T10:37:44,725 adding 'goatools/anno/opts.py' 2026-03-13T10:37:44,727 adding 'goatools/anno/update_association.py' 2026-03-13T10:37:44,729 adding 'goatools/anno/extensions/__init__.py' 2026-03-13T10:37:44,730 adding 'goatools/anno/extensions/extension.py' 2026-03-13T10:37:44,731 adding 'goatools/anno/extensions/extensions.py' 2026-03-13T10:37:44,732 adding 'goatools/anno/extensions/factory.py' 2026-03-13T10:37:44,734 adding 'goatools/anno/init/__init__.py' 2026-03-13T10:37:44,737 adding 'goatools/anno/init/reader_gaf.py' 2026-03-13T10:37:44,739 adding 'goatools/anno/init/reader_genetogo.py' 2026-03-13T10:37:44,741 adding 'goatools/anno/init/reader_gpad.py' 2026-03-13T10:37:44,743 adding 'goatools/anno/init/reader_idtogos.py' 2026-03-13T10:37:44,744 adding 'goatools/anno/init/utils.py' 2026-03-13T10:37:44,746 adding 'goatools/cli/__init__.py' 2026-03-13T10:37:44,748 adding 'goatools/cli/compare_gos.py' 2026-03-13T10:37:44,750 adding 'goatools/cli/docopt_parse.py' 2026-03-13T10:37:44,753 adding 'goatools/cli/find_enrichment.py' 2026-03-13T10:37:44,755 adding 'goatools/cli/gos_get.py' 2026-03-13T10:37:44,758 adding 'goatools/cli/gosubdag_plot.py' 2026-03-13T10:37:44,759 adding 'goatools/cli/grouped.py' 2026-03-13T10:37:44,761 adding 'goatools/cli/ncbi_gene_results_to_python.py' 2026-03-13T10:37:44,762 adding 'goatools/cli/prt_terms.py' 2026-03-13T10:37:44,764 adding 'goatools/cli/wr_hierarchy.py' 2026-03-13T10:37:44,765 adding 'goatools/cli/wr_sections.py' 2026-03-13T10:37:44,767 adding 'goatools/godag/__init__.py' 2026-03-13T10:37:44,768 adding 'goatools/godag/consts.py' 2026-03-13T10:37:44,770 adding 'goatools/godag/go_tasks.py' 2026-03-13T10:37:44,772 adding 'goatools/godag/obo_optional_attributes.py' 2026-03-13T10:37:44,773 adding 'goatools/godag/prtfncs.py' 2026-03-13T10:37:44,775 adding 'goatools/godag/prttime.py' 2026-03-13T10:37:44,776 adding 'goatools/godag/relationship_combos.py' 2026-03-13T10:37:44,778 adding 'goatools/godag/relationship_str.py' 2026-03-13T10:37:44,779 adding 'goatools/godag/reldepth.py' 2026-03-13T10:37:44,781 adding 'goatools/godag/typedef.py' 2026-03-13T10:37:44,782 adding 'goatools/goea/__init__.py' 2026-03-13T10:37:44,784 adding 'goatools/goea/go_enrichment_ns.py' 2026-03-13T10:37:44,786 adding 'goatools/gosubdag/__init__.py' 2026-03-13T10:37:44,788 adding 'goatools/gosubdag/go_edges.py' 2026-03-13T10:37:44,789 adding 'goatools/gosubdag/go_most_specific.py' 2026-03-13T10:37:44,791 adding 'goatools/gosubdag/go_paths.py' 2026-03-13T10:37:44,792 adding 'goatools/gosubdag/go_tasks.py' 2026-03-13T10:37:44,794 adding 'goatools/gosubdag/godag_rcnt.py' 2026-03-13T10:37:44,795 adding 'goatools/gosubdag/godag_rcnt_init.py' 2026-03-13T10:37:44,796 adding 'goatools/gosubdag/gosubdag.py' 2026-03-13T10:37:44,798 adding 'goatools/gosubdag/gosubdag_init.py' 2026-03-13T10:37:44,800 adding 'goatools/gosubdag/utils.py' 2026-03-13T10:37:44,802 adding 'goatools/gosubdag/plot/__init__.py' 2026-03-13T10:37:44,803 adding 'goatools/gosubdag/plot/go2color.py' 2026-03-13T10:37:44,805 adding 'goatools/gosubdag/plot/go_edge.py' 2026-03-13T10:37:44,806 adding 'goatools/gosubdag/plot/go_name_shorten.py' 2026-03-13T10:37:44,808 adding 'goatools/gosubdag/plot/go_node.py' 2026-03-13T10:37:44,809 adding 'goatools/gosubdag/plot/goea_results.py' 2026-03-13T10:37:44,811 adding 'goatools/gosubdag/plot/gosubdag_plot.py' 2026-03-13T10:37:44,813 adding 'goatools/gosubdag/plot/plot.py' 2026-03-13T10:37:44,814 adding 'goatools/gosubdag/rpt/__init__.py' 2026-03-13T10:37:44,816 adding 'goatools/gosubdag/rpt/wr_xlsx.py' 2026-03-13T10:37:44,818 adding 'goatools/gosubdag/rpt/write_hierarchy.py' 2026-03-13T10:37:44,819 adding 'goatools/grouper/__init__.py' 2026-03-13T10:37:44,821 adding 'goatools/grouper/aart_geneproducts_all.py' 2026-03-13T10:37:44,822 adding 'goatools/grouper/aart_geneproducts_one.py' 2026-03-13T10:37:44,824 adding 'goatools/grouper/colors.py' 2026-03-13T10:37:44,825 adding 'goatools/grouper/grprdflts.py' 2026-03-13T10:37:44,827 adding 'goatools/grouper/grprobj.py' 2026-03-13T10:37:44,829 adding 'goatools/grouper/grprobj_init.py' 2026-03-13T10:37:44,831 adding 'goatools/grouper/grprplt.py' 2026-03-13T10:37:44,832 adding 'goatools/grouper/hdrgos.py' 2026-03-13T10:37:44,834 adding 'goatools/grouper/plotobj.py' 2026-03-13T10:37:44,836 adding 'goatools/grouper/read_goids.py' 2026-03-13T10:37:44,838 adding 'goatools/grouper/sorter.py' 2026-03-13T10:37:44,839 adding 'goatools/grouper/sorter_gos.py' 2026-03-13T10:37:44,840 adding 'goatools/grouper/sorter_nts.py' 2026-03-13T10:37:44,842 adding 'goatools/grouper/tasks.py' 2026-03-13T10:37:44,843 adding 'goatools/grouper/utils.py' 2026-03-13T10:37:44,845 adding 'goatools/grouper/wr_sections.py' 2026-03-13T10:37:44,846 adding 'goatools/grouper/wrxlsx.py' 2026-03-13T10:37:44,848 adding 'goatools/parsers/__init__.py' 2026-03-13T10:37:44,850 adding 'goatools/parsers/david_chart.py' 2026-03-13T10:37:44,851 adding 'goatools/parsers/ncbi_gene_file_reader.py' 2026-03-13T10:37:44,853 adding 'goatools/rpt/__init__.py' 2026-03-13T10:37:44,855 adding 'goatools/rpt/goea_nt_xfrm.py' 2026-03-13T10:37:44,856 adding 'goatools/rpt/nts_xfrm.py' 2026-03-13T10:37:44,857 adding 'goatools/rpt/prtfmt.py' 2026-03-13T10:37:44,859 adding 'goatools/rpt/rpt_lev_depth.py' 2026-03-13T10:37:44,860 adding 'goatools/rpt/write_hierarchy_base.py' 2026-03-13T10:37:44,862 adding 'goatools/semsim/__init__.py' 2026-03-13T10:37:44,864 adding 'goatools/semsim/termwise/__init__.py' 2026-03-13T10:37:44,865 adding 'goatools/semsim/termwise/dag_a.py' 2026-03-13T10:37:44,867 adding 'goatools/semsim/termwise/wang.py' 2026-03-13T10:37:44,868 adding 'goatools/test_data/__init__.py' 2026-03-13T10:37:44,870 adding 'goatools/test_data/checks.py' 2026-03-13T10:37:44,871 adding 'goatools/test_data/gafs.py' 2026-03-13T10:37:45,638 adding 'goatools/test_data/genes_NCBI_10090_All.py' 2026-03-13T10:37:46,599 adding 'goatools/test_data/genes_NCBI_10090_ProteinCoding.py' 2026-03-13T10:37:47,254 adding 'goatools/test_data/genes_NCBI_7227_ProteinCoding.py' 2026-03-13T10:37:49,045 adding 'goatools/test_data/genes_NCBI_9606_All.py' 2026-03-13T10:37:50,070 adding 'goatools/test_data/genes_NCBI_9606_ProteinCoding.py' 2026-03-13T10:37:50,193 adding 'goatools/test_data/gjoneska_2015_ensmusg2symbol.py' 2026-03-13T10:37:50,561 adding 'goatools/test_data/gjoneska_goea_consistent_decrease.py' 2026-03-13T10:37:50,955 adding 'goatools/test_data/gjoneska_goea_consistent_increase.py' 2026-03-13T10:37:51,378 adding 'goatools/test_data/gjoneska_goea_late_decrease.py' 2026-03-13T10:37:51,856 adding 'goatools/test_data/gjoneska_goea_late_increase.py' 2026-03-13T10:37:52,115 adding 'goatools/test_data/gjoneska_goea_transient_decrease.py' 2026-03-13T10:37:52,437 adding 'goatools/test_data/gjoneska_goea_transient_increase.py' 2026-03-13T10:37:52,469 adding 'goatools/test_data/godag_timed.py' 2026-03-13T10:37:52,470 adding 'goatools/test_data/nature3102_goea.py' 2026-03-13T10:37:52,472 adding 'goatools/test_data/sorter.py' 2026-03-13T10:37:52,474 adding 'goatools/test_data/wr_subobo.py' 2026-03-13T10:37:52,476 adding 'goatools/test_data/cli/__init__.py' 2026-03-13T10:37:52,477 adding 'goatools/test_data/cli/find_enrichment_dflts.py' 2026-03-13T10:37:52,479 adding 'goatools/test_data/nbt_3102/README.md' 2026-03-13T10:37:52,480 adding 'goatools/test_data/nbt_3102/__init__.py' 2026-03-13T10:37:52,485 adding 'goatools/test_data/nbt_3102/nbt.3102-S4.xlsx' 2026-03-13T10:37:52,488 adding 'goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx' 2026-03-13T10:37:52,492 adding 'goatools/test_data/nbt_3102/nbt.3102-S6.xlsx' 2026-03-13T10:37:52,494 adding 'goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt' 2026-03-13T10:37:52,496 adding 'goatools/test_data/nbt_3102/symbol2geneid.py' 2026-03-13T10:37:52,497 adding 'goatools/test_data/sections/__init__.py' 2026-03-13T10:37:52,499 adding 'goatools/test_data/sections/data2018_07_find_enrichment.py' 2026-03-13T10:37:52,502 adding 'goatools/test_data/sections/dvk2018_genefamilyclusters.py' 2026-03-13T10:37:52,504 adding 'goatools/test_data/sections/gjoneska_pfenning.py' 2026-03-13T10:37:52,506 adding 'goatools-1.6.1.data/scripts/compare_gos.py' 2026-03-13T10:37:52,507 adding 'goatools-1.6.1.data/scripts/fetch_associations.py' 2026-03-13T10:37:52,508 adding 'goatools-1.6.1.data/scripts/find_enrichment.py' 2026-03-13T10:37:52,509 adding 'goatools-1.6.1.data/scripts/go_plot.py' 2026-03-13T10:37:52,511 adding 'goatools-1.6.1.data/scripts/map_to_slim.py' 2026-03-13T10:37:52,512 adding 'goatools-1.6.1.data/scripts/ncbi_gene_results_to_python.py' 2026-03-13T10:37:52,513 adding 'goatools-1.6.1.data/scripts/plot_go_term.py' 2026-03-13T10:37:52,514 adding 'goatools-1.6.1.data/scripts/prt_terms.py' 2026-03-13T10:37:52,515 adding 'goatools-1.6.1.data/scripts/wr_hier.py' 2026-03-13T10:37:52,516 adding 'goatools-1.6.1.data/scripts/wr_sections.py' 2026-03-13T10:37:52,519 adding 'goatools-1.6.1.dist-info/licenses/LICENSE' 2026-03-13T10:37:52,521 adding 'goatools-1.6.1.dist-info/METADATA' 2026-03-13T10:37:52,522 adding 'goatools-1.6.1.dist-info/WHEEL' 2026-03-13T10:37:52,523 adding 'goatools-1.6.1.dist-info/top_level.txt' 2026-03-13T10:37:52,525 adding 'goatools-1.6.1.dist-info/RECORD' 2026-03-13T10:37:52,730 removing build/bdist.linux-armv7l/wheel 2026-03-13T10:37:53,090 Building wheel for goatools (pyproject.toml): finished with status 'done' 2026-03-13T10:37:54,578 Created wheel for goatools: filename=goatools-1.6.1-py3-none-any.whl size=15765129 sha256=a6c566967be18105a7cca2d2c7dcd8772ddab0092cf0cca406028adc2e9de339 2026-03-13T10:37:54,579 Stored in directory: /tmp/pip-ephem-wheel-cache-nbq2f06t/wheels/d8/28/c2/04639a41710904244598901a40f459b26786e8f97afe096143 2026-03-13T10:37:54,604 Successfully built goatools 2026-03-13T10:37:54,982 Removed build tracker: '/tmp/pip-build-tracker-_zp3w3av'