2026-03-13T10:45:36,317 Created temporary directory: /tmp/pip-ephem-wheel-cache-zxibu1_h 2026-03-13T10:45:36,319 Created temporary directory: /tmp/pip-build-tracker-f4rjbj39 2026-03-13T10:45:36,320 Initialized build tracking at /tmp/pip-build-tracker-f4rjbj39 2026-03-13T10:45:36,320 Created build tracker: /tmp/pip-build-tracker-f4rjbj39 2026-03-13T10:45:36,320 Entered build tracker: /tmp/pip-build-tracker-f4rjbj39 2026-03-13T10:45:36,321 Created temporary directory: /tmp/pip-wheel-zbxptyqn 2026-03-13T10:45:36,324 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T10:45:36,327 Created temporary directory: /tmp/pip-ephem-wheel-cache-qjb4da85 2026-03-13T10:45:36,351 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T10:45:36,355 2 location(s) to search for versions of omicclaw: 2026-03-13T10:45:36,355 * https://pypi.org/simple/omicclaw/ 2026-03-13T10:45:36,355 * https://www.piwheels.org/simple/omicclaw/ 2026-03-13T10:45:36,356 Fetching project page and analyzing links: https://pypi.org/simple/omicclaw/ 2026-03-13T10:45:36,356 Getting page https://pypi.org/simple/omicclaw/ 2026-03-13T10:45:36,358 Found index url https://pypi.org/simple 2026-03-13T10:45:36,640 Fetched page https://pypi.org/simple/omicclaw/ as application/vnd.pypi.simple.v1+json 2026-03-13T10:45:36,641 Skipping link: No binaries permitted for omicclaw: https://files.pythonhosted.org/packages/74/c7/e727c48475ac9bdc4be10d419ff0c1cd0b15a3129b3c11368ada4bdf7d6c/omicclaw-2.0.0-py3-none-any.whl (from https://pypi.org/simple/omicclaw/) (requires-python:>=3.8) 2026-03-13T10:45:36,642 Found link https://files.pythonhosted.org/packages/ca/68/9d7a95c70f9dbf8e4a873bb7e6ece3ca6e98d551385f7900c21916184a8d/omicclaw-2.0.0.tar.gz (from https://pypi.org/simple/omicclaw/) (requires-python:>=3.8), version: 2.0.0 2026-03-13T10:45:36,643 Fetching project page and analyzing links: https://www.piwheels.org/simple/omicclaw/ 2026-03-13T10:45:36,644 Getting page https://www.piwheels.org/simple/omicclaw/ 2026-03-13T10:45:36,645 Found index url https://www.piwheels.org/simple 2026-03-13T10:45:36,830 Fetched page https://www.piwheels.org/simple/omicclaw/ as text/html 2026-03-13T10:45:36,831 Skipping link: not a file: https://www.piwheels.org/simple/omicclaw/ 2026-03-13T10:45:36,832 Skipping link: not a file: https://pypi.org/simple/omicclaw/ 2026-03-13T10:45:36,850 Given no hashes to check 1 links for project 'omicclaw': discarding no candidates 2026-03-13T10:45:36,868 Collecting omicclaw==2.0.0 2026-03-13T10:45:36,871 Created temporary directory: /tmp/pip-unpack-m9njl4et 2026-03-13T10:45:37,005 Downloading omicclaw-2.0.0.tar.gz (12.4 MB) 2026-03-13T10:45:44,895 Added omicclaw==2.0.0 from https://files.pythonhosted.org/packages/ca/68/9d7a95c70f9dbf8e4a873bb7e6ece3ca6e98d551385f7900c21916184a8d/omicclaw-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-f4rjbj39' 2026-03-13T10:45:44,902 Created temporary directory: /tmp/pip-build-env-rnj498tb 2026-03-13T10:45:44,906 Installing build dependencies: started 2026-03-13T10:45:44,908 Running command pip subprocess to install build dependencies 2026-03-13T10:45:46,065 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T10:45:46,685 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T10:45:46,709 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T10:45:48,460 Collecting setuptools>=61 2026-03-13T10:45:48,549 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-13T10:45:48,817 Collecting wheel 2026-03-13T10:45:48,833 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T10:45:50,854 Collecting Cython 2026-03-13T10:45:51,670 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-13T10:45:52,271 Collecting packaging>=24.0 2026-03-13T10:45:52,339 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T10:45:55,326 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-13T10:46:03,198 Creating /tmp/pip-build-env-rnj498tb/overlay/local/bin 2026-03-13T10:46:03,200 changing mode of /tmp/pip-build-env-rnj498tb/overlay/local/bin/cygdb to 755 2026-03-13T10:46:03,202 changing mode of /tmp/pip-build-env-rnj498tb/overlay/local/bin/cython to 755 2026-03-13T10:46:03,204 changing mode of /tmp/pip-build-env-rnj498tb/overlay/local/bin/cythonize to 755 2026-03-13T10:46:03,333 changing mode of /tmp/pip-build-env-rnj498tb/overlay/local/bin/wheel to 755 2026-03-13T10:46:03,361 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-13T10:46:03,737 Installing build dependencies: finished with status 'done' 2026-03-13T10:46:03,744 Getting requirements to build wheel: started 2026-03-13T10:46:03,745 Running command Getting requirements to build wheel 2026-03-13T10:46:04,461 /tmp/pip-build-env-rnj498tb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-13T10:46:04,461 !! 2026-03-13T10:46:04,462 ******************************************************************************** 2026-03-13T10:46:04,463 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-13T10:46:04,464 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-13T10:46:04,465 or your builds will no longer be supported. 2026-03-13T10:46:04,466 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:46:04,467 ******************************************************************************** 2026-03-13T10:46:04,468 !! 2026-03-13T10:46:04,469 corresp(dist, value, root_dir) 2026-03-13T10:46:04,743 running egg_info 2026-03-13T10:46:04,750 writing omicclaw.egg-info/PKG-INFO 2026-03-13T10:46:04,766 writing dependency_links to omicclaw.egg-info/dependency_links.txt 2026-03-13T10:46:04,768 writing entry points to omicclaw.egg-info/entry_points.txt 2026-03-13T10:46:04,777 writing requirements to omicclaw.egg-info/requires.txt 2026-03-13T10:46:04,778 writing top-level names to omicclaw.egg-info/top_level.txt 2026-03-13T10:46:05,058 reading manifest file 'omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:05,134 reading manifest template 'MANIFEST.in' 2026-03-13T10:46:06,053 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-13T10:46:07,409 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-13T10:46:07,852 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-13T10:46:12,396 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-13T10:46:12,857 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-13T10:46:13,335 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-13T10:46:13,790 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-13T10:46:14,298 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-13T10:46:14,734 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-13T10:46:15,206 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-13T10:46:16,704 no previously-included directories found matching '.git' 2026-03-13T10:46:16,708 no previously-included directories found matching '.github' 2026-03-13T10:46:16,713 no previously-included directories found matching '.claude' 2026-03-13T10:46:16,717 no previously-included directories found matching '.pytest_cache' 2026-03-13T10:46:16,721 no previously-included directories found matching '.ruff_cache' 2026-03-13T10:46:16,725 no previously-included directories found matching '.vscode' 2026-03-13T10:46:16,729 no previously-included directories found matching 'docs' 2026-03-13T10:46:16,733 no previously-included directories found matching 'tests' 2026-03-13T10:46:16,737 no previously-included directories found matching 'OvIntelligence' 2026-03-13T10:46:16,741 no previously-included directories found matching 'READMEM' 2026-03-13T10:46:16,746 no previously-included directories found matching 'omicverse_guide' 2026-03-13T10:46:16,750 no previously-included directories found matching 'omicverse_web' 2026-03-13T10:46:16,754 no previously-included directories found matching 'tmp' 2026-03-13T10:46:16,758 no previously-included directories found matching 'tmp_omicverse' 2026-03-13T10:46:16,762 no previously-included directories found matching 'Skill_Seekers' 2026-03-13T10:46:16,771 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-13T10:46:16,783 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-13T10:46:16,792 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-13T10:46:16,792 adding license file 'LICENSE' 2026-03-13T10:46:16,867 writing manifest file 'omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:16,983 Getting requirements to build wheel: finished with status 'done' 2026-03-13T10:46:16,987 Created temporary directory: /tmp/pip-modern-metadata-r2oso06s 2026-03-13T10:46:16,989 Preparing metadata (pyproject.toml): started 2026-03-13T10:46:16,991 Running command Preparing metadata (pyproject.toml) 2026-03-13T10:46:17,886 /tmp/pip-build-env-rnj498tb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-13T10:46:17,886 !! 2026-03-13T10:46:17,887 ******************************************************************************** 2026-03-13T10:46:17,888 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-13T10:46:17,889 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-13T10:46:17,890 or your builds will no longer be supported. 2026-03-13T10:46:17,891 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:46:17,891 ******************************************************************************** 2026-03-13T10:46:17,892 !! 2026-03-13T10:46:17,893 corresp(dist, value, root_dir) 2026-03-13T10:46:18,173 running dist_info 2026-03-13T10:46:18,184 creating /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info 2026-03-13T10:46:18,185 writing /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/PKG-INFO 2026-03-13T10:46:18,201 writing dependency_links to /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/dependency_links.txt 2026-03-13T10:46:18,203 writing entry points to /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/entry_points.txt 2026-03-13T10:46:18,212 writing requirements to /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/requires.txt 2026-03-13T10:46:18,214 writing top-level names to /tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/top_level.txt 2026-03-13T10:46:18,215 writing manifest file '/tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:18,423 reading manifest file '/tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:18,426 reading manifest template 'MANIFEST.in' 2026-03-13T10:46:19,393 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-13T10:46:20,759 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-13T10:46:21,231 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-13T10:46:25,674 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-13T10:46:26,140 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-13T10:46:26,614 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-13T10:46:27,072 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-13T10:46:27,586 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-13T10:46:28,048 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-13T10:46:28,554 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-13T10:46:30,046 no previously-included directories found matching '.git' 2026-03-13T10:46:30,048 no previously-included directories found matching '.github' 2026-03-13T10:46:30,050 no previously-included directories found matching '.claude' 2026-03-13T10:46:30,053 no previously-included directories found matching '.pytest_cache' 2026-03-13T10:46:30,055 no previously-included directories found matching '.ruff_cache' 2026-03-13T10:46:30,057 no previously-included directories found matching '.vscode' 2026-03-13T10:46:30,059 no previously-included directories found matching 'docs' 2026-03-13T10:46:30,061 no previously-included directories found matching 'tests' 2026-03-13T10:46:30,063 no previously-included directories found matching 'OvIntelligence' 2026-03-13T10:46:30,066 no previously-included directories found matching 'READMEM' 2026-03-13T10:46:30,068 no previously-included directories found matching 'omicverse_guide' 2026-03-13T10:46:30,070 no previously-included directories found matching 'omicverse_web' 2026-03-13T10:46:30,073 no previously-included directories found matching 'tmp' 2026-03-13T10:46:30,075 no previously-included directories found matching 'tmp_omicverse' 2026-03-13T10:46:30,077 no previously-included directories found matching 'Skill_Seekers' 2026-03-13T10:46:30,081 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-13T10:46:30,087 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-13T10:46:30,091 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-13T10:46:30,092 adding license file 'LICENSE' 2026-03-13T10:46:30,149 writing manifest file '/tmp/pip-modern-metadata-r2oso06s/omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:30,152 creating '/tmp/pip-modern-metadata-r2oso06s/omicclaw-2.0.0.dist-info' 2026-03-13T10:46:30,297 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T10:46:30,310 Source in /tmp/pip-wheel-zbxptyqn/omicclaw_acf9b5709e5d4b57885fd78b642277ba has version 2.0.0, which satisfies requirement omicclaw==2.0.0 from https://files.pythonhosted.org/packages/ca/68/9d7a95c70f9dbf8e4a873bb7e6ece3ca6e98d551385f7900c21916184a8d/omicclaw-2.0.0.tar.gz 2026-03-13T10:46:30,311 Removed omicclaw==2.0.0 from https://files.pythonhosted.org/packages/ca/68/9d7a95c70f9dbf8e4a873bb7e6ece3ca6e98d551385f7900c21916184a8d/omicclaw-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-f4rjbj39' 2026-03-13T10:46:30,331 Created temporary directory: /tmp/pip-unpack-o8ftzymt 2026-03-13T10:46:30,332 Building wheels for collected packages: omicclaw 2026-03-13T10:46:30,336 Created temporary directory: /tmp/pip-wheel-4xvurr78 2026-03-13T10:46:30,337 Destination directory: /tmp/pip-wheel-4xvurr78 2026-03-13T10:46:30,339 Building wheel for omicclaw (pyproject.toml): started 2026-03-13T10:46:30,340 Running command Building wheel for omicclaw (pyproject.toml) 2026-03-13T10:46:31,021 /tmp/pip-build-env-rnj498tb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-13T10:46:31,022 !! 2026-03-13T10:46:31,023 ******************************************************************************** 2026-03-13T10:46:31,023 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-13T10:46:31,024 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-13T10:46:31,025 or your builds will no longer be supported. 2026-03-13T10:46:31,026 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T10:46:31,026 ******************************************************************************** 2026-03-13T10:46:31,027 !! 2026-03-13T10:46:31,027 corresp(dist, value, root_dir) 2026-03-13T10:46:31,293 running bdist_wheel 2026-03-13T10:46:31,313 running build 2026-03-13T10:46:31,314 running build_py 2026-03-13T10:46:31,320 creating build/lib/omicverse 2026-03-13T10:46:31,322 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-13T10:46:31,325 copying omicverse/cli.py -> build/lib/omicverse 2026-03-13T10:46:31,327 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-13T10:46:31,330 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-13T10:46:31,333 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-13T10:46:31,335 copying omicverse/claw.py -> build/lib/omicverse 2026-03-13T10:46:31,338 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-13T10:46:31,340 creating build/lib/omicclaw 2026-03-13T10:46:31,341 copying omicclaw/__init__.py -> build/lib/omicclaw 2026-03-13T10:46:31,344 creating build/lib/omicverse/pp 2026-03-13T10:46:31,345 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,348 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,350 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,352 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,355 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,357 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,359 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,362 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,364 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,366 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,368 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,371 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,374 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,378 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,380 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,383 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,386 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,389 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,391 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,394 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,396 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,399 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,402 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-13T10:46:31,405 creating build/lib/omicverse/bulk2single 2026-03-13T10:46:31,406 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,408 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,411 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,414 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,416 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,418 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,421 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,424 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,425 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,428 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-13T10:46:31,431 creating build/lib/omicverse/llm 2026-03-13T10:46:31,432 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,436 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,439 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,441 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,443 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,447 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,449 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,453 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,455 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,457 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,460 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,463 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-13T10:46:31,468 creating build/lib/omicverse/fm 2026-03-13T10:46:31,469 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-13T10:46:31,472 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-13T10:46:31,474 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-13T10:46:31,477 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-13T10:46:31,479 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-13T10:46:31,482 creating build/lib/omicverse/biocontext 2026-03-13T10:46:31,483 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-13T10:46:31,485 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-13T10:46:31,487 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-13T10:46:31,490 creating build/lib/omicverse/data_files 2026-03-13T10:46:31,491 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-13T10:46:31,494 creating build/lib/omicverse/jarvis 2026-03-13T10:46:31,495 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,497 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,500 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,502 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,505 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,507 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,509 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,511 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,513 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,516 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-13T10:46:31,519 creating build/lib/omicverse/pl 2026-03-13T10:46:31,520 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,523 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,526 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,529 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,533 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,536 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,539 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,542 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,544 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,546 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,549 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,551 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,555 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,558 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,563 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,565 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,568 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,571 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,574 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,576 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-13T10:46:31,581 creating build/lib/omicverse/mcp 2026-03-13T10:46:31,582 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,584 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,588 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,590 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,593 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,596 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,599 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,601 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,603 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,605 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,607 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,610 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,612 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-13T10:46:31,616 creating build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,617 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,619 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,621 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,624 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,626 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,628 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,630 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,632 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,634 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:31,636 creating build/lib/omicverse/popv 2026-03-13T10:46:31,637 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,640 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,642 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,644 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,646 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,649 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-13T10:46:31,651 creating build/lib/omicverse/datasets 2026-03-13T10:46:31,652 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-13T10:46:31,654 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-13T10:46:31,657 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-13T10:46:31,660 creating build/lib/omicverse/space 2026-03-13T10:46:31,661 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-13T10:46:31,663 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-13T10:46:31,666 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-13T10:46:31,667 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-13T10:46:31,670 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-13T10:46:31,672 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-13T10:46:31,675 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-13T10:46:31,677 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-13T10:46:31,680 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-13T10:46:31,682 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-13T10:46:31,686 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-13T10:46:31,688 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-13T10:46:31,690 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-13T10:46:31,693 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-13T10:46:31,697 creating build/lib/omicverse/single 2026-03-13T10:46:31,698 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-13T10:46:31,701 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-13T10:46:31,704 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-13T10:46:31,707 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-13T10:46:31,714 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-13T10:46:31,717 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-13T10:46:31,719 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-13T10:46:31,722 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-13T10:46:31,725 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-13T10:46:31,727 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-13T10:46:31,731 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-13T10:46:31,735 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-13T10:46:31,737 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-13T10:46:31,740 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-13T10:46:31,742 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-13T10:46:31,745 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-13T10:46:31,747 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-13T10:46:31,750 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-13T10:46:31,752 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-13T10:46:31,754 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-13T10:46:31,756 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-13T10:46:31,761 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-13T10:46:31,764 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-13T10:46:31,766 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-13T10:46:31,769 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-13T10:46:31,771 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-13T10:46:31,775 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-13T10:46:31,777 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-13T10:46:31,780 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-13T10:46:31,783 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-13T10:46:31,787 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-13T10:46:31,789 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-13T10:46:31,791 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-13T10:46:31,794 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-13T10:46:31,797 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-13T10:46:31,799 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-13T10:46:31,801 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-13T10:46:31,804 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-13T10:46:31,806 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-13T10:46:31,809 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-13T10:46:31,812 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-13T10:46:31,814 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-13T10:46:31,817 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-13T10:46:31,819 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-13T10:46:31,822 creating build/lib/omicverse/agent 2026-03-13T10:46:31,823 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-13T10:46:31,825 creating build/lib/omicverse/external 2026-03-13T10:46:31,826 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-13T10:46:31,829 creating build/lib/omicverse/bulk 2026-03-13T10:46:31,830 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,833 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,836 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,838 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,856 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,858 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,860 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,863 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,865 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,868 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,870 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-13T10:46:31,875 creating build/lib/omicverse/utils 2026-03-13T10:46:31,876 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,879 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,881 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,883 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,888 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,891 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,893 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,895 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,898 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,900 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,902 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,907 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,910 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,912 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,915 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,918 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,920 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,922 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,924 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,934 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,948 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,950 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,953 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,958 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,965 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,970 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,972 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,975 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,977 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,979 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,981 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,984 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,986 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,989 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-13T10:46:31,992 creating build/lib/omicverse/alignment 2026-03-13T10:46:31,993 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-13T10:46:31,995 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-13T10:46:31,998 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,001 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,003 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,005 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,007 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,009 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,012 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-13T10:46:32,014 creating build/lib/omicverse/io 2026-03-13T10:46:32,015 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-13T10:46:32,018 creating build/lib/omicverse/pp/experimental 2026-03-13T10:46:32,019 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-13T10:46:32,020 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-13T10:46:32,023 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-13T10:46:32,026 creating build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,027 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,030 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,032 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,035 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,039 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,042 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,045 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,048 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,050 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,054 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,057 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,060 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-13T10:46:32,063 creating build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:32,064 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:32,067 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:32,068 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:32,070 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:32,073 creating build/lib/omicverse/llm/dr 2026-03-13T10:46:32,074 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,076 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,078 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,079 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,082 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,084 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-13T10:46:32,086 creating build/lib/omicverse/llm/CellPLM 2026-03-13T10:46:32,087 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-13T10:46:32,090 creating build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,091 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,094 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,097 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,099 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,101 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,103 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-13T10:46:32,106 creating build/lib/omicverse/llm/utils 2026-03-13T10:46:32,107 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-13T10:46:32,109 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-13T10:46:32,111 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-13T10:46:32,114 creating build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,115 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,117 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,119 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,120 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,123 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,125 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-13T10:46:32,128 creating build/lib/omicverse/llm/domain_research 2026-03-13T10:46:32,129 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-13T10:46:32,132 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,133 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,137 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,139 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,142 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,144 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,146 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,149 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-13T10:46:32,153 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,154 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,157 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,159 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,162 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,164 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,167 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,169 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:32,173 creating build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,174 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,176 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,179 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,181 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,183 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-13T10:46:32,186 creating build/lib/omicverse/llm/dr/retrievers 2026-03-13T10:46:32,187 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-13T10:46:32,191 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-13T10:46:32,194 creating build/lib/omicverse/llm/dr/verify 2026-03-13T10:46:32,196 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-13T10:46:32,200 creating build/lib/omicverse/llm/dr/research 2026-03-13T10:46:32,201 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-13T10:46:32,204 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-13T10:46:32,206 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-13T10:46:32,209 creating build/lib/omicverse/llm/dr/write 2026-03-13T10:46:32,210 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-13T10:46:32,213 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-13T10:46:32,215 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-13T10:46:32,218 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,219 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,222 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,225 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,228 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,229 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:32,232 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-13T10:46:32,233 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-13T10:46:32,236 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-13T10:46:32,238 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-13T10:46:32,240 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,241 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,243 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,245 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,248 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,250 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-13T10:46:32,253 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-13T10:46:32,254 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-13T10:46:32,256 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-13T10:46:32,258 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-13T10:46:32,260 creating build/lib/omicverse/llm/CellPLM/head 2026-03-13T10:46:32,261 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-13T10:46:32,263 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-13T10:46:32,266 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-13T10:46:32,267 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-13T10:46:32,269 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-13T10:46:32,272 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-13T10:46:32,274 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-13T10:46:32,276 creating build/lib/omicverse/llm/CellPLM/model 2026-03-13T10:46:32,277 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-13T10:46:32,279 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-13T10:46:32,282 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,283 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,285 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,287 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,289 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,291 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,294 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-13T10:46:32,296 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-13T10:46:32,298 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-13T10:46:32,300 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-13T10:46:32,302 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-13T10:46:32,304 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-13T10:46:32,305 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-13T10:46:32,307 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-13T10:46:32,309 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,310 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,312 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,314 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,316 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,318 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-13T10:46:32,321 creating build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,322 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,325 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,327 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,329 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,332 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,334 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-13T10:46:32,336 creating build/lib/omicverse/llm/scgpt/utils 2026-03-13T10:46:32,337 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-13T10:46:32,339 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-13T10:46:32,342 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-13T10:46:32,343 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-13T10:46:32,345 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-13T10:46:32,348 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-13T10:46:32,351 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:32,352 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:32,354 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:32,357 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,358 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,360 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,362 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,365 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,367 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-13T10:46:32,370 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-13T10:46:32,370 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-13T10:46:32,373 creating build/lib/omicverse/llm/domain_research/write 2026-03-13T10:46:32,373 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-13T10:46:32,376 creating build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,377 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,379 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,381 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,382 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,384 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,387 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,389 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,391 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-13T10:46:32,393 creating build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,394 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,399 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,404 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,405 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,409 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-13T10:46:32,412 creating build/lib/omicverse/jarvis/gateway 2026-03-13T10:46:32,413 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-13T10:46:32,415 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-13T10:46:32,417 creating build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,418 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,422 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,424 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,427 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,428 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,430 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,433 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-13T10:46:32,435 creating build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,437 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,439 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,442 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,444 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,446 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-13T10:46:32,449 creating build/lib/omicverse/popv/hub 2026-03-13T10:46:32,450 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-13T10:46:32,453 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-13T10:46:32,455 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-13T10:46:32,457 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-13T10:46:32,459 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-13T10:46:32,462 creating build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,463 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,465 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,468 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,471 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,473 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,475 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,478 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,480 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,483 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,485 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,488 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,490 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-13T10:46:32,493 creating build/lib/omicverse/single/templates 2026-03-13T10:46:32,494 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-13T10:46:32,496 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-13T10:46:32,499 creating build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,500 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,503 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,505 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,507 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,509 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,511 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:32,514 creating build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,515 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,517 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,519 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,522 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,524 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,527 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,529 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,532 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,534 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,537 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,540 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,542 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,545 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,547 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,549 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-13T10:46:32,551 creating build/lib/omicverse/external/GNTD 2026-03-13T10:46:32,552 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-13T10:46:32,554 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-13T10:46:32,556 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-13T10:46:32,558 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-13T10:46:32,561 creating build/lib/omicverse/external/cnmf 2026-03-13T10:46:32,562 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-13T10:46:32,564 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-13T10:46:32,568 creating build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,570 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,572 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,574 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,576 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,578 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,581 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,583 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-13T10:46:32,586 creating build/lib/omicverse/external/scanorama 2026-03-13T10:46:32,587 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-13T10:46:32,589 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-13T10:46:32,593 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-13T10:46:32,595 creating build/lib/omicverse/external/bulk2single 2026-03-13T10:46:32,596 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-13T10:46:32,599 creating build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,600 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,602 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,605 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,607 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,610 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,612 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-13T10:46:32,615 creating build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,616 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,618 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,621 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,624 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,626 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-13T10:46:32,629 creating build/lib/omicverse/external/scMulan 2026-03-13T10:46:32,630 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-13T10:46:32,632 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-13T10:46:32,634 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-13T10:46:32,637 creating build/lib/omicverse/external/datacollect 2026-03-13T10:46:32,638 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-13T10:46:32,641 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-13T10:46:32,643 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-13T10:46:32,646 creating build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,647 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,650 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,652 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,655 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,657 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,659 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,661 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,664 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,666 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-13T10:46:32,668 creating build/lib/omicverse/external/flowsig 2026-03-13T10:46:32,669 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-13T10:46:32,672 creating build/lib/omicverse/external/mofapy2 2026-03-13T10:46:32,673 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-13T10:46:32,675 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-13T10:46:32,677 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-13T10:46:32,679 creating build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,680 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,683 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,685 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,688 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,690 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,692 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,694 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,697 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,699 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,701 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,703 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-13T10:46:32,705 creating build/lib/omicverse/external/scrublet 2026-03-13T10:46:32,706 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-13T10:46:32,709 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-13T10:46:32,711 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-13T10:46:32,714 creating build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,715 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,717 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,719 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,724 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,726 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-13T10:46:32,729 creating build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,730 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,732 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,735 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,736 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,739 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,741 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,743 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,745 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,748 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,749 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,751 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,753 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,755 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,757 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,759 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,760 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,763 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,765 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,767 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,769 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,771 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-13T10:46:32,773 creating build/lib/omicverse/external/commot 2026-03-13T10:46:32,774 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-13T10:46:32,776 creating build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,777 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,780 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,782 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,786 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,788 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,791 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,794 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,796 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,798 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-13T10:46:32,801 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,802 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,805 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,808 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,810 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,812 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-13T10:46:32,815 creating build/lib/omicverse/external/tape 2026-03-13T10:46:32,816 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,819 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,821 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,824 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,826 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,829 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-13T10:46:32,832 creating build/lib/omicverse/external/spaco 2026-03-13T10:46:32,833 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,836 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,839 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,841 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,844 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,846 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,848 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,851 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,854 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-13T10:46:32,856 creating build/lib/omicverse/external/mpl_chord 2026-03-13T10:46:32,857 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-13T10:46:32,860 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-13T10:46:32,862 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-13T10:46:32,866 creating build/lib/omicverse/external/cellanova 2026-03-13T10:46:32,867 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-13T10:46:32,870 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-13T10:46:32,872 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-13T10:46:32,875 creating build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,876 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,879 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,882 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,884 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,888 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,890 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,893 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,895 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,897 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,900 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,903 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,906 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-13T10:46:32,908 creating build/lib/omicverse/external/cytotrace2 2026-03-13T10:46:32,909 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-13T10:46:32,912 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-13T10:46:32,914 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-13T10:46:32,917 creating build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,919 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,921 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,924 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,926 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,929 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-13T10:46:32,932 creating build/lib/omicverse/external/tosica 2026-03-13T10:46:32,934 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-13T10:46:32,938 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-13T10:46:32,941 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-13T10:46:32,944 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-13T10:46:32,947 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-13T10:46:32,951 creating build/lib/omicverse/external/scdiffusion 2026-03-13T10:46:32,953 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-13T10:46:32,956 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-13T10:46:32,959 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-13T10:46:32,962 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-13T10:46:32,966 creating build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,968 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,970 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,973 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,976 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,979 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,982 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,985 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,988 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,991 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,994 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:32,997 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:33,000 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:33,003 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-13T10:46:33,007 creating build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,009 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,012 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,015 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,018 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,020 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,023 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,026 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-13T10:46:33,029 creating build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,031 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,034 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,037 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,040 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,042 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:33,045 creating build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,047 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,050 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,053 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,055 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,058 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,060 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,063 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,066 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-13T10:46:33,069 creating build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,071 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,074 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,076 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,078 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,081 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,083 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-13T10:46:33,086 creating build/lib/omicverse/external/somde 2026-03-13T10:46:33,087 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-13T10:46:33,089 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-13T10:46:33,092 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-13T10:46:33,095 creating build/lib/omicverse/external/CAST 2026-03-13T10:46:33,096 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,099 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,102 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,105 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,107 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,109 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,112 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-13T10:46:33,117 creating build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,118 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,120 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,122 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,125 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,127 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,129 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,132 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,134 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,137 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,139 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-13T10:46:33,143 creating build/lib/omicverse/external/STT 2026-03-13T10:46:33,144 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-13T10:46:33,146 creating build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,148 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,150 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,153 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,155 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,158 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,160 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,163 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,165 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,166 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-13T10:46:33,169 creating build/lib/omicverse/external/VIA 2026-03-13T10:46:33,170 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,172 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,177 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,179 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,183 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,190 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,198 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-13T10:46:33,201 creating build/lib/omicverse/external/nocd 2026-03-13T10:46:33,202 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,204 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,206 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,207 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,209 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,211 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-13T10:46:33,214 creating build/lib/omicverse/external/spaceflow 2026-03-13T10:46:33,215 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-13T10:46:33,217 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-13T10:46:33,219 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-13T10:46:33,222 creating build/lib/omicverse/external/scSLAT 2026-03-13T10:46:33,223 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-13T10:46:33,225 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-13T10:46:33,227 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-13T10:46:33,230 creating build/lib/omicverse/external/BINARY 2026-03-13T10:46:33,231 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-13T10:46:33,234 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-13T10:46:33,236 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-13T10:46:33,238 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-13T10:46:33,240 creating build/lib/omicverse/external/bin2cell 2026-03-13T10:46:33,241 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-13T10:46:33,243 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-13T10:46:33,248 creating build/lib/omicverse/external/palantir 2026-03-13T10:46:33,249 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,252 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,256 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,258 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,261 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,263 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,265 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,267 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,269 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,271 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,273 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-13T10:46:33,276 creating build/lib/omicverse/external/topact 2026-03-13T10:46:33,276 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,278 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,281 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,284 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,286 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,289 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,291 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,293 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-13T10:46:33,295 creating build/lib/omicverse/external/harmony 2026-03-13T10:46:33,296 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-13T10:46:33,298 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-13T10:46:33,301 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-13T10:46:33,303 creating build/lib/omicverse/external/PROST 2026-03-13T10:46:33,304 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,307 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,310 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,312 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,314 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,316 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,318 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-13T10:46:33,321 creating build/lib/omicverse/external/gaston 2026-03-13T10:46:33,322 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,325 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,327 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,329 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,331 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,333 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,335 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,337 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,338 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,340 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,343 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,344 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,346 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,348 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,350 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,353 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-13T10:46:33,355 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,356 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,358 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,361 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,364 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,366 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,369 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,371 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,374 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,376 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,379 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:33,382 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,383 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,385 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,387 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,389 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,392 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,394 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,397 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,398 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,400 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,402 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,404 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,406 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:33,409 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,410 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,412 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,414 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,416 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,418 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:33,421 creating build/lib/omicverse/external/scMulan/model 2026-03-13T10:46:33,422 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-13T10:46:33,424 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-13T10:46:33,427 creating build/lib/omicverse/external/scMulan/utils 2026-03-13T10:46:33,428 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-13T10:46:33,430 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-13T10:46:33,433 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:33,434 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:33,437 creating build/lib/omicverse/external/datacollect/config 2026-03-13T10:46:33,438 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-13T10:46:33,441 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-13T10:46:33,443 creating build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,444 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,447 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,450 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,453 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,455 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,458 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,460 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,462 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,465 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,467 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,470 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,472 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,474 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,476 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,478 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,481 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,483 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,485 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,488 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,489 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,492 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,494 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-13T10:46:33,497 creating build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,498 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,500 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,503 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,504 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,507 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,509 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-13T10:46:33,513 creating build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,514 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,516 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,518 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,521 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,523 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,525 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,528 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,530 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,532 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,534 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,537 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,539 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,541 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,544 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,546 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,548 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,551 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,553 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,555 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,557 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,559 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,561 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,564 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,566 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,568 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,570 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,573 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,575 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,577 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,579 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,581 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,583 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,586 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,588 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-13T10:46:33,591 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,592 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,595 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,598 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,600 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,602 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,605 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,607 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,610 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,612 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:33,615 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,616 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,618 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,620 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,622 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,624 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,627 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-13T10:46:33,629 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,630 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,633 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,635 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,637 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,640 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,642 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,644 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,646 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:33,649 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:33,650 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:33,653 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:33,655 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:33,657 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:33,659 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,660 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,663 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,665 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,667 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,669 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,671 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,674 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:33,676 creating build/lib/omicverse/external/flowsig/plotting 2026-03-13T10:46:33,677 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-13T10:46:33,679 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-13T10:46:33,681 creating build/lib/omicverse/external/flowsig/utilities 2026-03-13T10:46:33,682 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-13T10:46:33,685 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-13T10:46:33,687 creating build/lib/omicverse/external/flowsig/tools 2026-03-13T10:46:33,688 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-13T10:46:33,690 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-13T10:46:33,692 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-13T10:46:33,694 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-13T10:46:33,696 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,697 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,700 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,702 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,704 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,707 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,708 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:33,711 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,712 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,714 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,717 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,720 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,723 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,724 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-13T10:46:33,727 creating build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,727 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,730 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,731 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,733 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,736 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-13T10:46:33,739 creating build/lib/omicverse/external/mofapy2/run 2026-03-13T10:46:33,740 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-13T10:46:33,745 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-13T10:46:33,748 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-13T10:46:33,749 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-13T10:46:33,751 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-13T10:46:33,754 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,756 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,760 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,762 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,765 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,767 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,770 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,773 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,776 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,779 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,781 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,784 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,786 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,789 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,792 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,795 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,797 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,800 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,802 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:33,806 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,808 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,810 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,812 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,815 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,817 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,820 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,823 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,827 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,829 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,831 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,833 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:33,837 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-13T10:46:33,838 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-13T10:46:33,840 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-13T10:46:33,842 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-13T10:46:33,845 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-13T10:46:33,846 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-13T10:46:33,848 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-13T10:46:33,850 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-13T10:46:33,853 creating build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,854 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,856 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,858 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,859 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,861 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-13T10:46:33,864 creating build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,865 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,869 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,872 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,874 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,877 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,879 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,882 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,884 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-13T10:46:33,887 creating build/lib/omicverse/external/commot/plotting 2026-03-13T10:46:33,888 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-13T10:46:33,890 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-13T10:46:33,893 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-13T10:46:33,896 creating build/lib/omicverse/external/commot/tools 2026-03-13T10:46:33,897 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-13T10:46:33,899 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-13T10:46:33,902 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-13T10:46:33,906 creating build/lib/omicverse/external/commot/preprocessing 2026-03-13T10:46:33,907 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-13T10:46:33,909 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-13T10:46:33,911 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-13T10:46:33,913 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,914 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,917 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,920 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,922 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,923 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:33,927 creating build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,928 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,929 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,931 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,934 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,936 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:33,940 creating build/lib/omicverse/external/space/cell2location 2026-03-13T10:46:33,941 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-13T10:46:33,944 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-13T10:46:33,947 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,948 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,950 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,952 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,955 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,957 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,959 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,961 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,964 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-13T10:46:33,966 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:33,967 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:33,969 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:33,971 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:33,973 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:33,975 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:33,976 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:33,978 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:33,981 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-13T10:46:33,982 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-13T10:46:33,984 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-13T10:46:33,986 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-13T10:46:33,988 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-13T10:46:33,989 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-13T10:46:33,992 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-13T10:46:33,994 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-13T10:46:33,997 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:33,998 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:34,000 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:34,003 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:34,005 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:34,007 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:34,010 creating build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,011 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,013 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,015 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,018 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,021 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:34,024 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:34,025 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:34,028 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:34,030 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:34,032 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,033 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,035 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,037 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,041 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,042 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:34,045 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:34,047 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:34,048 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:34,051 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:34,054 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:34,055 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:34,057 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:34,059 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:34,062 creating build/lib/omicverse/external/spaco/external 2026-03-13T10:46:34,063 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-13T10:46:34,066 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-13T10:46:34,069 creating build/lib/omicverse/external/single/arboreto 2026-03-13T10:46:34,070 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-13T10:46:34,072 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-13T10:46:34,075 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-13T10:46:34,077 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-13T10:46:34,080 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,081 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,084 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,086 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,089 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,091 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,093 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,095 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,098 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,100 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,102 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,104 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,106 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,108 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,110 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,112 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,115 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,117 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,119 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:34,122 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-13T10:46:34,123 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-13T10:46:34,126 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-13T10:46:34,128 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-13T10:46:34,131 creating build/lib/omicverse/external/CAST/model 2026-03-13T10:46:34,133 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-13T10:46:34,135 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-13T10:46:34,137 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-13T10:46:34,139 creating build/lib/omicverse/external/STT/tl 2026-03-13T10:46:34,140 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-13T10:46:34,142 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-13T10:46:34,145 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-13T10:46:34,147 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-13T10:46:34,149 creating build/lib/omicverse/external/STT/pl 2026-03-13T10:46:34,150 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-13T10:46:34,152 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-13T10:46:34,155 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-13T10:46:34,157 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-13T10:46:34,160 creating build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:34,161 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:34,163 creating build/lib/omicverse/external/nocd/metrics 2026-03-13T10:46:34,164 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-13T10:46:34,166 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-13T10:46:34,168 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-13T10:46:34,170 creating build/lib/omicverse/external/nocd/nn 2026-03-13T10:46:34,171 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-13T10:46:34,173 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-13T10:46:34,175 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-13T10:46:34,177 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-13T10:46:34,179 creating build/lib/omicverse/external/scSLAT/viz 2026-03-13T10:46:34,180 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-13T10:46:34,183 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-13T10:46:34,185 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-13T10:46:34,187 creating build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,188 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,191 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,193 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,196 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,197 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,199 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,201 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,204 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-13T10:46:34,207 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:34,208 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:34,210 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:34,212 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:34,213 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:34,216 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:34,218 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:34,220 creating build/lib/omicverse/bulk/_alignment 2026-03-13T10:46:34,221 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-13T10:46:34,223 creating build/lib/omicverse/utils/harness 2026-03-13T10:46:34,224 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,226 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,229 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,231 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,233 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,235 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,238 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-13T10:46:34,241 creating build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,242 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,244 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,247 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,249 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,251 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,253 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,256 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,258 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,261 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:34,264 creating build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,265 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,266 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,269 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,271 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,273 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,276 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,278 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,280 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,282 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,285 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-13T10:46:34,289 creating build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,290 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,293 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,296 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,298 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,301 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,303 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,306 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,308 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,310 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,313 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,315 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,318 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,320 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-13T10:46:34,323 creating build/lib/omicverse/io/spatial 2026-03-13T10:46:34,324 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-13T10:46:34,327 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-13T10:46:34,329 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-13T10:46:34,331 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-13T10:46:34,334 creating build/lib/omicverse/io/general 2026-03-13T10:46:34,335 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-13T10:46:34,337 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-13T10:46:34,339 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-13T10:46:34,341 creating build/lib/omicverse/io/single 2026-03-13T10:46:34,342 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-13T10:46:34,344 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-13T10:46:34,346 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-13T10:46:34,348 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-13T10:46:34,351 creating build/lib/omicverse/io/bulk 2026-03-13T10:46:34,352 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-13T10:46:34,355 running egg_info 2026-03-13T10:46:34,369 writing omicclaw.egg-info/PKG-INFO 2026-03-13T10:46:34,384 writing dependency_links to omicclaw.egg-info/dependency_links.txt 2026-03-13T10:46:34,386 writing entry points to omicclaw.egg-info/entry_points.txt 2026-03-13T10:46:34,395 writing requirements to omicclaw.egg-info/requires.txt 2026-03-13T10:46:34,396 writing top-level names to omicclaw.egg-info/top_level.txt 2026-03-13T10:46:34,580 reading manifest file 'omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:34,642 reading manifest template 'MANIFEST.in' 2026-03-13T10:46:35,632 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-13T10:46:37,400 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-13T10:46:37,876 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-13T10:46:42,345 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-13T10:46:42,930 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-13T10:46:43,649 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-13T10:46:44,164 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-13T10:46:44,641 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-13T10:46:45,099 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-13T10:46:45,598 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-13T10:46:47,018 no previously-included directories found matching '.git' 2026-03-13T10:46:47,025 no previously-included directories found matching '.github' 2026-03-13T10:46:47,025 no previously-included directories found matching '.claude' 2026-03-13T10:46:47,028 no previously-included directories found matching '.pytest_cache' 2026-03-13T10:46:47,031 no previously-included directories found matching '.ruff_cache' 2026-03-13T10:46:47,034 no previously-included directories found matching '.vscode' 2026-03-13T10:46:47,037 no previously-included directories found matching 'docs' 2026-03-13T10:46:47,041 no previously-included directories found matching 'tests' 2026-03-13T10:46:47,044 no previously-included directories found matching 'OvIntelligence' 2026-03-13T10:46:47,047 no previously-included directories found matching 'READMEM' 2026-03-13T10:46:47,051 no previously-included directories found matching 'omicverse_guide' 2026-03-13T10:46:47,054 no previously-included directories found matching 'omicverse_web' 2026-03-13T10:46:47,058 no previously-included directories found matching 'tmp' 2026-03-13T10:46:47,061 no previously-included directories found matching 'tmp_omicverse' 2026-03-13T10:46:47,064 no previously-included directories found matching 'Skill_Seekers' 2026-03-13T10:46:47,071 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-13T10:46:47,079 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-13T10:46:47,086 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-13T10:46:47,087 adding license file 'LICENSE' 2026-03-13T10:46:47,158 writing manifest file 'omicclaw.egg-info/SOURCES.txt' 2026-03-13T10:46:47,266 creating build/lib/omicverse/.ipynb_checkpoints 2026-03-13T10:46:47,268 copying omicverse/.ipynb_checkpoints/__init__-checkpoint.py -> build/lib/omicverse/.ipynb_checkpoints 2026-03-13T10:46:47,270 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-13T10:46:47,273 copying omicverse/data_files/apoptosis_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,275 copying omicverse/data_files/apoptosis_mouse.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,278 copying omicverse/data_files/c2.cp.v7.5.1.symbols.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,304 copying omicverse/data_files/cell_cycle_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,306 copying omicverse/data_files/cell_cycle_mouse.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,308 copying omicverse/data_files/emt_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,310 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-13T10:46:47,316 copying omicverse/data_files/gender_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,318 copying omicverse/data_files/gender_mouse.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,321 copying omicverse/data_files/h.all.v7.5.1.symbols.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,325 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,328 copying omicverse/data_files/human_lung.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,331 copying omicverse/data_files/human_t_cell_markers.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,333 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,406 copying omicverse/data_files/mitochondrial_genes_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,408 copying omicverse/data_files/mitochondrial_genes_mouse.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,411 copying omicverse/data_files/mouse_brain.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,413 copying omicverse/data_files/mouse_liver.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,416 copying omicverse/data_files/mouse_lung.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,418 copying omicverse/data_files/ribosomal_genes_human.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,420 copying omicverse/data_files/ribosomal_genes_mouse.gmt -> build/lib/omicverse/data_files 2026-03-13T10:46:47,423 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-13T10:46:47,426 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-13T10:46:47,428 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-13T10:46:47,431 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-13T10:46:47,434 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-13T10:46:47,436 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-13T10:46:47,438 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:47,445 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:47,448 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:47,451 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-13T10:46:47,454 creating build/lib/omicverse/llm/scfoundation/models 2026-03-13T10:46:47,455 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-13T10:46:47,458 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:47,482 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:47,499 creating build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,500 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,503 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,505 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,518 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,533 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-13T10:46:47,545 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-13T10:46:47,548 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-13T10:46:47,550 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-13T10:46:47,552 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-13T10:46:47,555 creating build/lib/omicverse/single/templates/img 2026-03-13T10:46:47,556 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-13T10:46:47,558 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-13T10:46:47,561 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-13T10:46:47,565 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-13T10:46:47,568 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-13T10:46:47,570 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-13T10:46:47,573 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-13T10:46:47,576 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-13T10:46:47,578 creating build/lib/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:47,579 copying omicverse/external/nocd/.ipynb_checkpoints/generate-checkpoint.py -> build/lib/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:47,581 copying omicverse/external/nocd/.ipynb_checkpoints/sampler-checkpoint.py -> build/lib/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:47,583 copying omicverse/external/nocd/.ipynb_checkpoints/train-checkpoint.py -> build/lib/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:47,586 copying omicverse/external/nocd/.ipynb_checkpoints/utils-checkpoint.py -> build/lib/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:47,588 creating build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,589 copying omicverse/external/gaston/.ipynb_checkpoints/__init__-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,591 copying omicverse/external/gaston/.ipynb_checkpoints/__main__-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,594 copying omicverse/external/gaston/.ipynb_checkpoints/binning_and_plotting-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,597 copying omicverse/external/gaston/.ipynb_checkpoints/cluster_plotting-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,600 copying omicverse/external/gaston/.ipynb_checkpoints/dp_related-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,602 copying omicverse/external/gaston/.ipynb_checkpoints/filter_genes-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,604 copying omicverse/external/gaston/.ipynb_checkpoints/isodepth_scaling-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,606 copying omicverse/external/gaston/.ipynb_checkpoints/neural_net-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,609 copying omicverse/external/gaston/.ipynb_checkpoints/plot_cell_types-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,611 copying omicverse/external/gaston/.ipynb_checkpoints/process_NN_output-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,614 copying omicverse/external/gaston/.ipynb_checkpoints/run_slurm_scripts-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,616 copying omicverse/external/gaston/.ipynb_checkpoints/segmented_fit-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,618 copying omicverse/external/gaston/.ipynb_checkpoints/spatial_gene_classification-checkpoint.py -> build/lib/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:47,621 creating build/lib/omicverse/external/SEACells/Rscripts 2026-03-13T10:46:47,622 copying omicverse/external/SEACells/Rscripts/chromVAR.R -> build/lib/omicverse/external/SEACells/Rscripts 2026-03-13T10:46:47,624 copying omicverse/external/SEACells/Rscripts/tanay.R -> build/lib/omicverse/external/SEACells/Rscripts 2026-03-13T10:46:47,626 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:47,631 creating build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,632 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/__init__-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,635 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/activeselect-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,637 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/fast_functions-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,640 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/fast_generator-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,643 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/initsetup-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,646 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/scinfer-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,648 copying omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/scprocess-checkpoint.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:47,651 copying omicverse/external/bulk2single/pybayesprism/run_pybp.bsh -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:47,653 creating build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,654 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/__init__-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,656 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/compare-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,658 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/extract-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,661 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/gibbs-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,664 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/joint_post-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,666 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/main-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,669 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/optim-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,672 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/prism-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,675 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/process_input-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,677 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/references-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,679 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/run-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,681 copying omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/theta_post-checkpoint.py -> build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:47,683 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:47,685 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:47,818 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:47,822 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:47,829 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:48,364 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:48,394 creating build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,395 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,398 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,400 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,403 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,406 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,410 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,413 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,416 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,419 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,423 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,426 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,430 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-13T10:46:48,433 creating build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,434 copying omicverse/external/flowsig/data/allTFs_human.txt -> build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,437 copying omicverse/external/flowsig/data/allTFs_mouse.txt -> build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,441 copying omicverse/external/flowsig/data/allTFs_zebrafish.txt -> build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,455 copying omicverse/external/flowsig/data/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,477 copying omicverse/external/flowsig/data/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/external/flowsig/data 2026-03-13T10:46:48,490 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:48,491 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:48,499 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:48,510 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:48,519 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:48,520 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:48,539 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:48,555 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:48,573 copying omicverse/external/commot/_utils/plot_chord.R -> build/lib/omicverse/external/commot/_utils 2026-03-13T10:46:48,575 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:48,577 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:48,581 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:48,584 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:48,585 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:48,588 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:48,592 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:48,597 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-13T10:46:48,599 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:48,602 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:48,604 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:48,607 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-13T10:46:48,610 creating build/lib/omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:48,611 copying omicverse/external/nocd/metrics/.ipynb_checkpoints/supervised-checkpoint.py -> build/lib/omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:48,613 copying omicverse/external/nocd/metrics/.ipynb_checkpoints/unsupervised-checkpoint.py -> build/lib/omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:48,615 creating build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:48,616 copying omicverse/external/nocd/nn/.ipynb_checkpoints/__init__-checkpoint.py -> build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:48,618 copying omicverse/external/nocd/nn/.ipynb_checkpoints/decoder-checkpoint.py -> build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:48,621 copying omicverse/external/nocd/nn/.ipynb_checkpoints/gcn-checkpoint.py -> build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:48,623 copying omicverse/external/nocd/nn/.ipynb_checkpoints/imrpoved_gcn-checkpoint.py -> build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:48,626 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-13T10:46:48,731 installing to build/bdist.linux-armv7l/wheel 2026-03-13T10:46:48,732 running install 2026-03-13T10:46:48,756 running install_lib 2026-03-13T10:46:48,762 creating build/bdist.linux-armv7l/wheel 2026-03-13T10:46:48,765 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-13T10:46:48,767 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-13T10:46:48,769 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-13T10:46:48,770 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-13T10:46:48,772 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-13T10:46:48,775 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-13T10:46:48,777 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,780 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,783 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,784 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,788 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,791 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,794 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,796 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,799 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,801 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,803 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,806 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,809 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,813 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,815 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,818 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,821 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,824 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,826 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,829 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,832 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,834 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,837 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-13T10:46:48,841 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-13T10:46:48,842 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,844 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,846 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,849 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,852 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,854 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,857 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,860 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,862 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,865 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-13T10:46:48,868 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-13T10:46:48,870 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-13T10:46:48,871 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,874 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,877 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,879 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,883 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,885 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,888 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,892 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,894 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,897 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,900 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,903 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-13T10:46:48,906 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,907 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,910 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,912 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,915 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,916 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,919 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,920 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-13T10:46:48,924 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-13T10:46:48,925 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,927 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,929 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,931 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,933 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,935 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,938 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,940 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-13T10:46:48,941 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,944 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,951 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,953 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,955 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,957 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,959 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,961 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-13T10:46:48,963 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-13T10:46:48,964 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-13T10:46:48,966 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:48,970 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:48,973 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:48,976 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-13T10:46:48,978 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-13T10:46:48,979 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-13T10:46:48,981 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-13T10:46:48,983 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-13T10:46:48,985 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-13T10:46:48,986 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-13T10:46:48,989 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:48,992 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-13T10:46:48,993 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-13T10:46:48,997 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-13T10:46:49,000 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:49,002 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:49,005 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:49,008 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-13T10:46:49,010 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-13T10:46:49,013 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:49,016 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-13T10:46:49,019 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-13T10:46:49,020 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-13T10:46:49,022 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-13T10:46:49,025 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-13T10:46:49,028 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-13T10:46:49,029 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-13T10:46:49,032 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-13T10:46:49,034 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-13T10:46:49,038 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,040 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,046 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-13T10:46:49,048 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,050 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,052 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,056 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,058 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,061 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-13T10:46:49,064 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-13T10:46:49,066 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-13T10:46:49,069 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-13T10:46:49,071 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-13T10:46:49,074 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,076 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,080 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,082 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,085 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,089 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-13T10:46:49,092 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-13T10:46:49,094 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-13T10:46:49,096 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-13T10:46:49,099 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-13T10:46:49,101 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-13T10:46:49,103 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-13T10:46:49,105 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-13T10:46:49,107 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-13T10:46:49,110 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-13T10:46:49,112 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-13T10:46:49,114 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-13T10:46:49,117 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-13T10:46:49,119 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-13T10:46:49,122 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-13T10:46:49,123 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-13T10:46:49,126 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-13T10:46:49,129 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,131 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,134 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,137 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,140 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,143 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,146 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-13T10:46:49,150 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-13T10:46:49,151 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-13T10:46:49,154 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-13T10:46:49,156 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-13T10:46:49,159 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-13T10:46:49,161 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-13T10:46:49,163 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-13T10:46:49,165 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,169 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-13T10:46:49,170 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,173 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,177 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,179 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,182 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,183 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,185 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,187 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,189 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,192 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-13T10:46:49,194 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-13T10:46:49,195 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,198 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,201 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,203 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,206 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,208 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-13T10:46:49,210 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-13T10:46:49,212 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-13T10:46:49,214 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-13T10:46:49,216 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,219 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-13T10:46:49,220 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-13T10:46:49,223 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-13T10:46:49,226 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-13T10:46:49,227 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-13T10:46:49,230 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:49,231 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:49,253 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:49,255 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:49,257 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-13T10:46:49,273 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-13T10:46:49,274 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-13T10:46:49,276 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-13T10:46:49,278 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-13T10:46:49,281 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-13T10:46:49,282 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,285 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,286 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,288 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,290 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,293 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,295 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-13T10:46:49,297 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,299 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,301 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,303 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,305 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-13T10:46:49,308 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,312 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,315 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,317 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,320 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-13T10:46:49,321 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-13T10:46:49,323 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-13T10:46:49,325 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-13T10:46:49,327 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-13T10:46:49,329 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-13T10:46:49,331 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,334 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-13T10:46:49,338 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,341 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-13T10:46:49,343 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-13T10:46:49,344 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,346 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,348 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,350 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,352 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,354 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,356 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,359 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-13T10:46:49,361 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-13T10:46:49,364 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-13T10:46:49,366 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-13T10:46:49,369 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-13T10:46:49,371 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-13T10:46:49,374 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,377 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-13T10:46:49,378 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-13T10:46:49,380 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-13T10:46:49,382 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-13T10:46:49,386 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-13T10:46:49,387 copying build/lib/omicverse/data_files/mouse_brain.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,389 copying build/lib/omicverse/data_files/h.all.v7.5.1.symbols.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,392 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,465 copying build/lib/omicverse/data_files/emt_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,467 copying build/lib/omicverse/data_files/human_lung.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,470 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-13T10:46:49,471 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-13T10:46:49,473 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-13T10:46:49,484 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-13T10:46:49,495 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-13T10:46:49,510 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-13T10:46:49,512 copying build/lib/omicverse/data_files/apoptosis_mouse.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,514 copying build/lib/omicverse/data_files/cell_cycle_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,516 copying build/lib/omicverse/data_files/human_t_cell_markers.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,518 copying build/lib/omicverse/data_files/gender_mouse.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,520 copying build/lib/omicverse/data_files/mouse_liver.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,522 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,524 copying build/lib/omicverse/data_files/ribosomal_genes_mouse.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,526 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,528 copying build/lib/omicverse/data_files/mitochondrial_genes_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,530 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,532 copying build/lib/omicverse/data_files/c2.cp.v7.5.1.symbols.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,557 copying build/lib/omicverse/data_files/mitochondrial_genes_mouse.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,559 copying build/lib/omicverse/data_files/mouse_lung.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,561 copying build/lib/omicverse/data_files/gender_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,563 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,568 copying build/lib/omicverse/data_files/apoptosis_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,571 copying build/lib/omicverse/data_files/ribosomal_genes_human.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,573 copying build/lib/omicverse/data_files/cell_cycle_mouse.gmt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-13T10:46:49,576 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-13T10:46:49,577 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-13T10:46:49,579 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-13T10:46:49,583 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-13T10:46:49,586 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-13T10:46:49,588 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-13T10:46:49,591 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-13T10:46:49,594 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,597 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,599 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,602 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,604 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,607 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,609 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,611 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,613 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,616 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-13T10:46:49,617 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-13T10:46:49,619 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-13T10:46:49,621 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,624 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,626 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,629 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-13T10:46:49,630 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,633 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,635 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,637 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,639 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,641 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,643 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-13T10:46:49,645 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,648 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-13T10:46:49,651 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,655 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-13T10:46:49,656 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,660 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,662 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,667 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,673 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,677 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,680 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,684 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,687 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,689 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,693 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,696 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,699 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,702 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,708 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,710 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,713 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,716 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,720 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,723 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-13T10:46:49,727 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-13T10:46:49,729 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-13T10:46:49,731 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-13T10:46:49,734 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-13T10:46:49,737 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-13T10:46:49,739 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-13T10:46:49,741 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-13T10:46:49,744 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,747 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,751 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,753 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,756 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,759 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,761 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,763 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,766 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,769 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,771 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,774 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,777 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-13T10:46:49,781 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-13T10:46:49,783 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,785 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,787 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,790 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,792 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,795 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,798 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,801 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,805 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,809 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-13T10:46:49,812 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,818 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-13T10:46:49,820 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,823 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,827 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-13T10:46:49,828 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-13T10:46:49,832 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-13T10:46:49,834 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-13T10:46:49,837 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-13T10:46:49,839 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-13T10:46:49,842 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,844 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,848 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-13T10:46:49,850 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,853 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,856 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,859 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,863 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,868 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,871 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,874 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,878 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,881 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,887 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,889 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-13T10:46:49,891 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,894 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-13T10:46:49,897 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,901 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-13T10:46:49,903 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-13T10:46:49,906 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-13T10:46:49,949 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-13T10:46:49,951 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:49,956 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-13T10:46:49,957 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,962 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,966 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,968 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,973 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,976 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,980 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,985 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,989 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:49,994 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:50,007 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:50,015 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:50,018 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:50,022 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-13T10:46:50,027 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-13T10:46:50,028 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,032 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,035 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,040 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,050 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,055 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,061 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,073 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,108 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,112 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-13T10:46:50,114 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-13T10:46:50,116 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-13T10:46:50,119 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-13T10:46:50,124 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-13T10:46:50,127 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-13T10:46:50,129 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,132 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,134 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,136 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,139 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,143 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-13T10:46:50,145 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,149 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,153 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,156 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,159 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,161 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,164 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,168 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,171 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,173 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,176 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,179 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,186 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,190 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,193 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,198 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,202 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,210 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,213 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,217 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,222 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,227 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,230 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,233 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,237 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,240 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,246 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,250 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,253 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,257 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,261 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,265 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,271 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,274 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,278 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,281 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-13T10:46:50,286 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-13T10:46:50,288 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-13T10:46:50,293 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-13T10:46:50,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-13T10:46:50,297 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,301 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,304 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,306 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,308 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,310 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,313 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-13T10:46:50,315 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-13T10:46:50,317 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,319 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,322 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,324 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,327 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,330 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,332 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,335 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,337 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,340 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,343 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,346 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells/Rscripts 2026-03-13T10:46:50,350 copying build/lib/omicverse/external/SEACells/Rscripts/chromVAR.R -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells/Rscripts 2026-03-13T10:46:50,352 copying build/lib/omicverse/external/SEACells/Rscripts/tanay.R -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells/Rscripts 2026-03-13T10:46:50,355 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,357 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,360 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-13T10:46:50,363 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-13T10:46:50,364 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-13T10:46:50,366 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-13T10:46:50,368 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-13T10:46:50,371 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-13T10:46:50,375 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-13T10:46:50,376 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-13T10:46:50,378 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-13T10:46:50,384 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-13T10:46:50,385 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,387 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,389 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,391 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,393 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,395 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,398 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-13T10:46:50,401 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-13T10:46:50,402 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-13T10:46:50,404 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-13T10:46:50,407 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-13T10:46:50,410 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-13T10:46:50,411 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,413 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,415 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,418 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,421 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,424 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,426 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,428 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,431 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,436 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,439 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,440 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/activeselect-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,443 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/fast_functions-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,445 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/fast_generator-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,448 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/scinfer-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,450 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/scprocess-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,453 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/__init__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,454 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints/initsetup-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler/.ipynb_checkpoints 2026-03-13T10:46:50,456 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,459 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-13T10:46:50,461 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-13T10:46:50,463 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,464 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,467 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,469 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,471 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,473 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,475 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,479 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:50,480 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:50,485 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:50,685 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-13T10:46:50,689 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,691 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,693 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,695 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,698 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,699 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/references-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,701 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/__init__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,702 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/run-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,704 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/compare-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,706 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/prism-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,708 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/gibbs-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,710 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/theta_post-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,712 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/main-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,714 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/optim-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,716 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/extract-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,718 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/process_input-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,720 copying build/lib/omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints/joint_post-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/.ipynb_checkpoints 2026-03-13T10:46:50,722 copying build/lib/omicverse/external/bulk2single/pybayesprism/run_pybp.bsh -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,724 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,726 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-13T10:46:50,729 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,730 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,732 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,735 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,736 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,739 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-13T10:46:50,741 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-13T10:46:50,743 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,745 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,747 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,749 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,751 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,753 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-13T10:46:50,756 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-13T10:46:50,757 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-13T10:46:50,759 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-13T10:46:50,761 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-13T10:46:50,764 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-13T10:46:50,766 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-13T10:46:50,769 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-13T10:46:50,770 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-13T10:46:50,773 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-13T10:46:50,775 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:50,776 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:50,779 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:50,805 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-13T10:46:51,292 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-13T10:46:51,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-13T10:46:51,296 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-13T10:46:51,299 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-13T10:46:51,302 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-13T10:46:51,303 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-13T10:46:51,306 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-13T10:46:51,308 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-13T10:46:51,312 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-13T10:46:51,313 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-13T10:46:51,317 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-13T10:46:51,318 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-13T10:46:51,321 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-13T10:46:51,323 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-13T10:46:51,326 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-13T10:46:51,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-13T10:46:51,330 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,334 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,337 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,340 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,342 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,345 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,348 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,350 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,353 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,356 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,358 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,361 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,363 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,366 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,368 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,371 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,374 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,377 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,379 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,381 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,383 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,386 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-13T10:46:51,389 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-13T10:46:51,390 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,392 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,394 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,396 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,398 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,401 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-13T10:46:51,403 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-13T10:46:51,406 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-13T10:46:51,407 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,410 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,412 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,414 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,417 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,419 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,421 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,423 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,426 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,428 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,430 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,432 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,435 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,436 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,439 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,441 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,444 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,445 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,448 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,450 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,452 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,454 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-13T10:46:51,457 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,458 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,461 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,463 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,465 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,467 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,470 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-13T10:46:51,472 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,474 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,477 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,478 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,481 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,483 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,485 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,488 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,490 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,492 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,494 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-13T10:46:51,497 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,499 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,501 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,504 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,506 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-13T10:46:51,507 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-13T10:46:51,510 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-13T10:46:51,512 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-13T10:46:51,514 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-13T10:46:51,516 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,519 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,521 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,523 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,526 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,528 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,530 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,533 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,535 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,537 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,539 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,543 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,544 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,546 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,548 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,550 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,552 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,554 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,556 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-13T10:46:51,559 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,561 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,564 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,566 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,568 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-13T10:46:51,571 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-13T10:46:51,574 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-13T10:46:51,575 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,577 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,579 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,582 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,585 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,588 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,591 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,593 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,596 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,598 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,600 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,603 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-13T10:46:51,606 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-13T10:46:51,607 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,609 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,612 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,615 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,618 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,619 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,622 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,624 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,627 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-13T10:46:51,630 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-13T10:46:51,631 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-13T10:46:51,633 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-13T10:46:51,635 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-13T10:46:51,638 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-13T10:46:51,639 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-13T10:46:51,641 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-13T10:46:51,643 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-13T10:46:51,644 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-13T10:46:51,647 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-13T10:46:51,649 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-13T10:46:51,651 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-13T10:46:51,653 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-13T10:46:51,655 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,657 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,659 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,662 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,663 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,666 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,668 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-13T10:46:51,670 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/data 2026-03-13T10:46:51,671 copying build/lib/omicverse/external/flowsig/data/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/data 2026-03-13T10:46:51,674 copying build/lib/omicverse/external/flowsig/data/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/data 2026-03-13T10:46:51,684 copying build/lib/omicverse/external/flowsig/data/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/data 2026-03-13T10:46:51,698 copying build/lib/omicverse/external/flowsig/data/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/data 2026-03-13T10:46:51,712 copying build/lib/omicverse/external/flowsig/data/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/data 2026-03-13T10:46:51,716 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-13T10:46:51,719 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,721 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,723 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,727 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,730 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,734 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,736 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-13T10:46:51,739 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-13T10:46:51,740 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-13T10:46:51,744 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,745 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,749 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,752 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,755 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,758 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,761 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,764 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,767 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,770 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,772 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,775 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,778 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,781 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,783 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,786 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,789 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,792 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,795 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-13T10:46:51,799 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-13T10:46:51,801 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-13T10:46:51,804 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-13T10:46:51,809 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,811 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,814 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,817 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,820 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,823 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,826 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,830 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,834 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,837 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,839 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,841 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-13T10:46:51,843 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-13T10:46:51,845 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-13T10:46:51,847 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-13T10:46:51,850 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-13T10:46:51,851 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-13T10:46:51,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:51,858 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:51,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:51,870 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:51,894 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:51,918 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-13T10:46:51,934 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:51,942 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-13T10:46:51,949 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-13T10:46:51,950 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-13T10:46:51,953 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-13T10:46:51,954 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-13T10:46:51,955 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-13T10:46:51,958 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-13T10:46:51,959 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,962 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,964 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,966 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,969 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,971 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,973 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,975 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,977 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,979 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,982 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-13T10:46:51,985 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-13T10:46:51,986 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-13T10:46:51,988 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-13T10:46:51,990 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-13T10:46:51,993 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-13T10:46:51,994 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-13T10:46:51,997 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-13T10:46:51,999 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-13T10:46:52,004 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-13T10:46:52,006 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-13T10:46:52,010 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-13T10:46:52,011 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-13T10:46:52,014 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-13T10:46:52,016 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-13T10:46:52,019 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-13T10:46:52,021 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,024 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,026 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,029 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-13T10:46:52,030 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-13T10:46:52,032 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-13T10:46:52,034 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-13T10:46:52,037 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,039 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,042 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,044 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,046 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,048 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,051 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-13T10:46:52,052 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-13T10:46:52,054 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-13T10:46:52,056 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-13T10:46:52,058 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-13T10:46:52,060 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-13T10:46:52,062 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,064 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,065 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,068 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,070 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,072 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,074 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,077 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,079 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,081 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,083 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-13T10:46:52,085 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-13T10:46:52,086 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,089 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,092 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,094 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,097 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,098 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,101 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,103 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-13T10:46:52,107 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-13T10:46:52,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-13T10:46:52,109 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-13T10:46:52,112 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-13T10:46:52,114 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-13T10:46:52,118 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-13T10:46:52,119 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-13T10:46:52,121 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-13T10:46:52,124 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-13T10:46:52,127 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-13T10:46:52,130 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-13T10:46:52,132 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-13T10:46:52,133 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-13T10:46:52,135 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:52,137 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:52,142 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:52,145 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-13T10:46:52,150 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:52,151 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:52,154 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-13T10:46:52,157 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-13T10:46:52,160 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-13T10:46:52,161 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-13T10:46:52,164 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,165 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,168 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,171 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,173 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,175 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-13T10:46:52,178 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-13T10:46:52,179 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,181 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,183 copying build/lib/omicverse/external/commot/_utils/plot_chord.R -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,185 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,188 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,191 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-13T10:46:52,192 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-13T10:46:52,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-13T10:46:52,197 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,200 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,202 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,206 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,209 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,212 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,214 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,216 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,218 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-13T10:46:52,221 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,222 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,225 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,227 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,229 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,231 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-13T10:46:52,234 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-13T10:46:52,236 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-13T10:46:52,237 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-13T10:46:52,241 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,242 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,244 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,246 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,249 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,251 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,253 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,256 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,259 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-13T10:46:52,261 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:52,263 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:52,265 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:52,267 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:52,269 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-13T10:46:52,272 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:52,273 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:52,275 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-13T10:46:52,277 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-13T10:46:52,280 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-13T10:46:52,281 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-13T10:46:52,283 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-13T10:46:52,285 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-13T10:46:52,288 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-13T10:46:52,289 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-13T10:46:52,291 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-13T10:46:52,293 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-13T10:46:52,296 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,297 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,300 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,303 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,305 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,307 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-13T10:46:52,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-13T10:46:52,312 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:52,313 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:52,316 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:52,318 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-13T10:46:52,321 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,322 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,324 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,325 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,328 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,330 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-13T10:46:52,333 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,335 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:52,336 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:52,338 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:52,341 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-13T10:46:52,344 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,346 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,349 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,351 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,355 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:52,356 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:52,358 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:52,360 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-13T10:46:52,363 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-13T10:46:52,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-13T10:46:52,367 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,370 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,372 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,374 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,376 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,378 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-13T10:46:52,381 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-13T10:46:52,382 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,384 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,387 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,389 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,391 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,394 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-13T10:46:52,395 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-13T10:46:52,397 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-13T10:46:52,399 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,401 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,403 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,405 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-13T10:46:52,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-13T10:46:52,408 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-13T10:46:52,410 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-13T10:46:52,412 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-13T10:46:52,415 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-13T10:46:52,417 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-13T10:46:52,418 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-13T10:46:52,420 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-13T10:46:52,423 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-13T10:46:52,426 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-13T10:46:52,428 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-13T10:46:52,429 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-13T10:46:52,431 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-13T10:46:52,433 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-13T10:46:52,435 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-13T10:46:52,437 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,439 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,441 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,443 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,446 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,448 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,451 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,453 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,455 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,458 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,460 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,463 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-13T10:46:52,466 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-13T10:46:52,467 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-13T10:46:52,469 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-13T10:46:52,471 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-13T10:46:52,474 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-13T10:46:52,475 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-13T10:46:52,478 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-13T10:46:52,480 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-13T10:46:52,482 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-13T10:46:52,484 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-13T10:46:52,487 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-13T10:46:52,488 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-13T10:46:52,490 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-13T10:46:52,493 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-13T10:46:52,494 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-13T10:46:52,497 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-13T10:46:52,500 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-13T10:46:52,501 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-13T10:46:52,503 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-13T10:46:52,505 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-13T10:46:52,508 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,509 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,511 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,513 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,515 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,518 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,520 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,522 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,525 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,527 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,529 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,530 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,533 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,535 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,537 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,539 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,542 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,544 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,546 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-13T10:46:52,548 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-13T10:46:52,551 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-13T10:46:52,552 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-13T10:46:52,554 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-13T10:46:52,556 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-13T10:46:52,559 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-13T10:46:52,560 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,562 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,563 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,565 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,567 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,569 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,572 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,574 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,576 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,578 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,581 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,583 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,585 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-13T10:46:52,588 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-13T10:46:52,589 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,592 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,594 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,596 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,597 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,599 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,601 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-13T10:46:52,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-13T10:46:52,604 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,607 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,609 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,611 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,613 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,615 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-13T10:46:52,618 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-13T10:46:52,620 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,623 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,626 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,628 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,631 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,633 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,636 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,638 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-13T10:46:52,642 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-13T10:46:52,644 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,647 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,650 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,652 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,655 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,658 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-13T10:46:52,661 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-13T10:46:52,662 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-13T10:46:52,664 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-13T10:46:52,667 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-13T10:46:52,671 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-13T10:46:52,672 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,675 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,678 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,681 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,683 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,685 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,689 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-13T10:46:52,690 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-13T10:46:52,693 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-13T10:46:52,695 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-13T10:46:52,697 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-13T10:46:52,702 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-13T10:46:52,703 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,706 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,709 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,712 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,715 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,717 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,720 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,722 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,724 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,727 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-13T10:46:52,730 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-13T10:46:52,732 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-13T10:46:52,733 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-13T10:46:52,735 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-13T10:46:52,737 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-13T10:46:52,739 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-13T10:46:52,742 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-13T10:46:52,743 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-13T10:46:52,745 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-13T10:46:52,747 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-13T10:46:52,750 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-13T10:46:52,752 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-13T10:46:52,754 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-13T10:46:52,755 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,758 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,760 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,762 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,765 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,767 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,770 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-13T10:46:52,771 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-13T10:46:52,774 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-13T10:46:52,776 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-13T10:46:52,778 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-13T10:46:52,780 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-13T10:46:52,782 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,785 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,787 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-13T10:46:52,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-13T10:46:52,791 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,794 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,800 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,802 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,806 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,811 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,817 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-13T10:46:52,820 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-13T10:46:52,821 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,825 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-13T10:46:52,826 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-13T10:46:52,828 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-13T10:46:52,830 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-13T10:46:52,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:52,834 copying build/lib/omicverse/external/nocd/metrics/.ipynb_checkpoints/unsupervised-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:52,837 copying build/lib/omicverse/external/nocd/metrics/.ipynb_checkpoints/supervised-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics/.ipynb_checkpoints 2026-03-13T10:46:52,839 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,842 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,844 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,847 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-13T10:46:52,848 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-13T10:46:52,851 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-13T10:46:52,853 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-13T10:46:52,855 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-13T10:46:52,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:52,859 copying build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints/__init__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:52,862 copying build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints/imrpoved_gcn-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:52,864 copying build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints/decoder-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:52,867 copying build/lib/omicverse/external/nocd/nn/.ipynb_checkpoints/gcn-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn/.ipynb_checkpoints 2026-03-13T10:46:52,869 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,872 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:52,873 copying build/lib/omicverse/external/nocd/.ipynb_checkpoints/sampler-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:52,876 copying build/lib/omicverse/external/nocd/.ipynb_checkpoints/train-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:52,879 copying build/lib/omicverse/external/nocd/.ipynb_checkpoints/generate-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:52,881 copying build/lib/omicverse/external/nocd/.ipynb_checkpoints/utils-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/.ipynb_checkpoints 2026-03-13T10:46:52,883 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-13T10:46:52,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-13T10:46:52,887 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-13T10:46:52,889 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-13T10:46:52,892 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-13T10:46:52,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-13T10:46:52,895 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-13T10:46:52,898 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-13T10:46:52,899 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-13T10:46:52,903 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-13T10:46:52,905 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-13T10:46:52,907 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-13T10:46:52,910 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-13T10:46:52,911 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,914 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,917 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:52,918 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:52,920 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-13T10:46:52,923 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:52,925 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:52,927 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:52,929 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-13T10:46:52,932 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,934 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,936 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,938 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,939 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,941 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-13T10:46:52,943 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-13T10:46:52,946 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-13T10:46:52,947 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-13T10:46:52,950 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-13T10:46:52,951 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-13T10:46:52,954 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-13T10:46:52,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-13T10:46:52,957 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-13T10:46:52,959 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-13T10:46:52,963 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-13T10:46:52,964 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,967 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,971 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,973 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,976 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,978 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,980 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,982 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,984 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,986 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,988 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-13T10:46:52,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-13T10:46:52,992 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:52,994 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:52,997 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,000 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,002 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,007 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,008 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,010 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-13T10:46:53,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-13T10:46:53,014 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-13T10:46:53,016 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-13T10:46:53,019 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-13T10:46:53,022 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-13T10:46:53,023 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,026 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,028 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,031 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,033 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,035 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,037 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-13T10:46:53,040 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-13T10:46:53,041 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,044 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,046 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,048 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,050 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,052 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,054 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,056 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,058 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,060 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,062 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,064 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,066 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,068 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,069 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/filter_genes-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,071 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/neural_net-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,073 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/binning_and_plotting-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,076 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/plot_cell_types-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,078 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/__init__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,080 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/dp_related-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,082 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/process_NN_output-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,084 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/run_slurm_scripts-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,086 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/spatial_gene_classification-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,088 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/__main__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,090 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/isodepth_scaling-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,092 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/segmented_fit-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,094 copying build/lib/omicverse/external/gaston/.ipynb_checkpoints/cluster_plotting-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston/.ipynb_checkpoints 2026-03-13T10:46:53,096 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,099 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,101 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-13T10:46:53,104 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-13T10:46:53,105 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-13T10:46:53,106 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-13T10:46:53,108 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,112 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,115 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,120 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,134 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,136 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,138 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,141 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,144 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,146 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,148 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-13T10:46:53,152 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-13T10:46:53,154 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,157 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,159 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,162 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-13T10:46:53,164 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,166 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,169 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,171 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,174 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,176 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,179 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-13T10:46:53,182 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,187 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-13T10:46:53,188 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,191 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,194 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,197 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,199 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,201 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,204 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,207 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,210 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,212 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-13T10:46:53,215 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,219 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,221 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,224 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,226 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,228 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,231 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,235 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,238 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,241 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,243 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,247 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,250 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,252 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,255 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,258 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,261 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,264 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,267 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,271 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,274 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-13T10:46:53,275 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,277 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,279 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,282 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,284 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,288 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,290 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,293 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,295 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,298 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-13T10:46:53,301 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,304 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,307 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,309 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,311 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,314 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-13T10:46:53,315 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,318 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,320 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,323 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,325 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,328 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,331 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,334 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,336 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,338 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,341 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,344 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,347 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-13T10:46:53,349 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,352 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,355 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,358 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,360 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-13T10:46:53,364 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-13T10:46:53,366 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,369 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,372 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,374 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,377 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,379 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,381 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,383 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,386 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-13T10:46:53,388 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-13T10:46:53,391 creating build/bdist.linux-armv7l/wheel/omicverse/.ipynb_checkpoints 2026-03-13T10:46:53,392 copying build/lib/omicverse/.ipynb_checkpoints/__init__-checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/.ipynb_checkpoints 2026-03-13T10:46:53,394 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-13T10:46:53,396 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-13T10:46:53,397 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-13T10:46:53,400 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-13T10:46:53,402 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-13T10:46:53,404 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-13T10:46:53,407 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-13T10:46:53,408 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-13T10:46:53,410 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-13T10:46:53,411 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-13T10:46:53,413 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-13T10:46:53,416 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-13T10:46:53,417 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-13T10:46:53,420 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-13T10:46:53,422 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-13T10:46:53,425 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-13T10:46:53,428 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-13T10:46:53,430 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-13T10:46:53,433 creating build/bdist.linux-armv7l/wheel/omicclaw 2026-03-13T10:46:53,434 copying build/lib/omicclaw/__init__.py -> build/bdist.linux-armv7l/wheel/./omicclaw 2026-03-13T10:46:53,437 running install_egg_info 2026-03-13T10:46:53,444 Copying omicclaw.egg-info to build/bdist.linux-armv7l/wheel/./omicclaw-2.0.0-py3.11.egg-info 2026-03-13T10:46:53,464 running install_scripts 2026-03-13T10:46:53,481 creating build/bdist.linux-armv7l/wheel/omicclaw-2.0.0.dist-info/WHEEL 2026-03-13T10:46:53,484 creating '/tmp/pip-wheel-4xvurr78/.tmp-_rygu8vu/omicclaw-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T10:46:53,487 adding 'omicclaw/__init__.py' 2026-03-13T10:46:53,498 adding 'omicclaw-2.0.0.dist-info/licenses/LICENSE' 2026-03-13T10:46:53,502 adding 'omicverse/__init__.py' 2026-03-13T10:46:53,504 adding 'omicverse/_lazy_loader.py' 2026-03-13T10:46:53,507 adding 'omicverse/_monitor.py' 2026-03-13T10:46:53,516 adding 'omicverse/_registry.py' 2026-03-13T10:46:53,523 adding 'omicverse/_settings.py' 2026-03-13T10:46:53,528 adding 'omicverse/claw.py' 2026-03-13T10:46:53,529 adding 'omicverse/cli.py' 2026-03-13T10:46:53,532 adding 'omicverse/.ipynb_checkpoints/__init__-checkpoint.py' 2026-03-13T10:46:53,534 adding 'omicverse/agent/__init__.py' 2026-03-13T10:46:53,538 adding 'omicverse/alignment/STAR.py' 2026-03-13T10:46:53,539 adding 'omicverse/alignment/__init__.py' 2026-03-13T10:46:53,542 adding 'omicverse/alignment/_cli_utils.py' 2026-03-13T10:46:53,544 adding 'omicverse/alignment/fastp.py' 2026-03-13T10:46:53,547 adding 'omicverse/alignment/featureCount.py' 2026-03-13T10:46:53,550 adding 'omicverse/alignment/fq_dump.py' 2026-03-13T10:46:53,555 adding 'omicverse/alignment/kb_api.py' 2026-03-13T10:46:53,557 adding 'omicverse/alignment/pipeline.py' 2026-03-13T10:46:53,559 adding 'omicverse/alignment/prefetch.py' 2026-03-13T10:46:53,561 adding 'omicverse/biocontext/__init__.py' 2026-03-13T10:46:53,564 adding 'omicverse/biocontext/_client.py' 2026-03-13T10:46:53,568 adding 'omicverse/biocontext/_tools.py' 2026-03-13T10:46:53,574 adding 'omicverse/bulk/_Deseq2.py' 2026-03-13T10:46:53,579 adding 'omicverse/bulk/_Enrichment.py' 2026-03-13T10:46:53,583 adding 'omicverse/bulk/_Gene_module.py' 2026-03-13T10:46:53,585 adding 'omicverse/bulk/__init__.py' 2026-03-13T10:46:53,640 adding 'omicverse/bulk/_chm13.py' 2026-03-13T10:46:53,646 adding 'omicverse/bulk/_combat.py' 2026-03-13T10:46:53,648 adding 'omicverse/bulk/_decov.py' 2026-03-13T10:46:53,649 adding 'omicverse/bulk/_df_apply.py' 2026-03-13T10:46:53,654 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-13T10:46:53,656 adding 'omicverse/bulk/_network.py' 2026-03-13T10:46:53,658 adding 'omicverse/bulk/_tcga.py' 2026-03-13T10:46:53,660 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-13T10:46:53,661 adding 'omicverse/bulk2single/__init__.py' 2026-03-13T10:46:53,665 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-13T10:46:53,666 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-13T10:46:53,669 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-13T10:46:53,673 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-13T10:46:53,678 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-13T10:46:53,680 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-13T10:46:53,682 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-13T10:46:53,685 adding 'omicverse/bulk2single/_utils.py' 2026-03-13T10:46:53,687 adding 'omicverse/bulk2single/_vae.py' 2026-03-13T10:46:53,689 adding 'omicverse/data_files/README.md' 2026-03-13T10:46:53,690 adding 'omicverse/data_files/apoptosis_human.gmt' 2026-03-13T10:46:53,692 adding 'omicverse/data_files/apoptosis_mouse.gmt' 2026-03-13T10:46:53,869 adding 'omicverse/data_files/c2.cp.v7.5.1.symbols.gmt' 2026-03-13T10:46:53,879 adding 'omicverse/data_files/cell_cycle_human.gmt' 2026-03-13T10:46:53,880 adding 'omicverse/data_files/cell_cycle_mouse.gmt' 2026-03-13T10:46:53,881 adding 'omicverse/data_files/emt_human.gmt' 2026-03-13T10:46:53,921 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-13T10:46:53,923 adding 'omicverse/data_files/gender_human.gmt' 2026-03-13T10:46:53,924 adding 'omicverse/data_files/gender_mouse.gmt' 2026-03-13T10:46:53,933 adding 'omicverse/data_files/h.all.v7.5.1.symbols.gmt' 2026-03-13T10:46:53,934 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-13T10:46:53,936 adding 'omicverse/data_files/human_lung.gmt' 2026-03-13T10:46:53,937 adding 'omicverse/data_files/human_t_cell_markers.gmt' 2026-03-13T10:46:54,453 adding 'omicverse/data_files/mart_export.txt' 2026-03-13T10:46:54,484 adding 'omicverse/data_files/mitochondrial_genes_human.gmt' 2026-03-13T10:46:54,486 adding 'omicverse/data_files/mitochondrial_genes_mouse.gmt' 2026-03-13T10:46:54,487 adding 'omicverse/data_files/mouse_brain.gmt' 2026-03-13T10:46:54,488 adding 'omicverse/data_files/mouse_liver.gmt' 2026-03-13T10:46:54,490 adding 'omicverse/data_files/mouse_lung.gmt' 2026-03-13T10:46:54,491 adding 'omicverse/data_files/ribosomal_genes_human.gmt' 2026-03-13T10:46:54,492 adding 'omicverse/data_files/ribosomal_genes_mouse.gmt' 2026-03-13T10:46:54,494 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-13T10:46:54,497 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-13T10:46:54,499 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-13T10:46:54,522 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-13T10:46:54,564 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-13T10:46:54,820 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-13T10:46:54,826 adding 'omicverse/datasets/__init__.py' 2026-03-13T10:46:54,831 adding 'omicverse/datasets/_datasets.py' 2026-03-13T10:46:54,833 adding 'omicverse/datasets/_signatures.py' 2026-03-13T10:46:54,836 adding 'omicverse/external/__init__.py' 2026-03-13T10:46:54,839 adding 'omicverse/external/BINARY/Model.py' 2026-03-13T10:46:54,840 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-13T10:46:54,842 adding 'omicverse/external/BINARY/__init__.py' 2026-03-13T10:46:54,844 adding 'omicverse/external/BINARY/utils.py' 2026-03-13T10:46:54,846 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-13T10:46:54,849 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-13T10:46:54,853 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-13T10:46:54,854 adding 'omicverse/external/CAST/__init__.py' 2026-03-13T10:46:54,857 adding 'omicverse/external/CAST/main.py' 2026-03-13T10:46:54,859 adding 'omicverse/external/CAST/utils.py' 2026-03-13T10:46:54,861 adding 'omicverse/external/CAST/visualize.py' 2026-03-13T10:46:54,863 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-13T10:46:54,864 adding 'omicverse/external/CAST/model/aug.py' 2026-03-13T10:46:54,866 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-13T10:46:54,868 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-13T10:46:54,869 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-13T10:46:54,871 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-13T10:46:54,873 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-13T10:46:54,876 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-13T10:46:54,879 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-13T10:46:54,881 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-13T10:46:54,883 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-13T10:46:54,885 adding 'omicverse/external/CEFCON/utils.py' 2026-03-13T10:46:54,887 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-13T10:46:54,890 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-13T10:46:54,892 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-13T10:46:54,894 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-13T10:46:54,897 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-13T10:46:54,899 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-13T10:46:54,900 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-13T10:46:54,903 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-13T10:46:54,904 adding 'omicverse/external/GNTD/_utils.py' 2026-03-13T10:46:54,907 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-13T10:46:54,908 adding 'omicverse/external/GraphST/__init__.py' 2026-03-13T10:46:54,910 adding 'omicverse/external/GraphST/model.py' 2026-03-13T10:46:54,912 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-13T10:46:54,913 adding 'omicverse/external/GraphST/readme.txt' 2026-03-13T10:46:54,914 adding 'omicverse/external/GraphST/utils.py' 2026-03-13T10:46:54,916 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-13T10:46:54,918 adding 'omicverse/external/NaiveDE/base.py' 2026-03-13T10:46:54,919 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-13T10:46:54,920 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-13T10:46:54,922 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-13T10:46:54,923 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-13T10:46:54,925 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-13T10:46:54,927 adding 'omicverse/external/PROST/PROST.py' 2026-03-13T10:46:54,928 adding 'omicverse/external/PROST/__init__.py' 2026-03-13T10:46:54,930 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-13T10:46:54,931 adding 'omicverse/external/PROST/layers.py' 2026-03-13T10:46:54,933 adding 'omicverse/external/PROST/model.py' 2026-03-13T10:46:54,934 adding 'omicverse/external/PROST/plot.py' 2026-03-13T10:46:54,938 adding 'omicverse/external/PROST/utils.py' 2026-03-13T10:46:54,940 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-13T10:46:54,942 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-13T10:46:54,943 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-13T10:46:54,945 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-13T10:46:54,968 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-13T10:46:54,971 adding 'omicverse/external/SEACells/__init__.py' 2026-03-13T10:46:54,973 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-13T10:46:54,974 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-13T10:46:54,976 adding 'omicverse/external/SEACells/core.py' 2026-03-13T10:46:54,979 adding 'omicverse/external/SEACells/cpu.py' 2026-03-13T10:46:54,982 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-13T10:46:54,984 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-13T10:46:54,985 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-13T10:46:54,987 adding 'omicverse/external/SEACells/genescores.py' 2026-03-13T10:46:54,990 adding 'omicverse/external/SEACells/gpu.py' 2026-03-13T10:46:54,992 adding 'omicverse/external/SEACells/plot.py' 2026-03-13T10:46:54,993 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-13T10:46:54,995 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-13T10:46:54,996 adding 'omicverse/external/SEACells/utils.py' 2026-03-13T10:46:54,997 adding 'omicverse/external/SEACells/version.py' 2026-03-13T10:46:54,999 adding 'omicverse/external/SEACells/Rscripts/chromVAR.R' 2026-03-13T10:46:55,000 adding 'omicverse/external/SEACells/Rscripts/tanay.R' 2026-03-13T10:46:55,002 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-13T10:46:55,004 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-13T10:46:55,005 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-13T10:46:55,007 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-13T10:46:55,009 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-13T10:46:55,010 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-13T10:46:55,013 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-13T10:46:55,015 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-13T10:46:55,016 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-13T10:46:55,018 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-13T10:46:55,020 adding 'omicverse/external/STT/__init__.py' 2026-03-13T10:46:55,022 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-13T10:46:55,025 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-13T10:46:55,027 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-13T10:46:55,029 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-13T10:46:55,031 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-13T10:46:55,032 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-13T10:46:55,035 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-13T10:46:55,037 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-13T10:46:55,039 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-13T10:46:55,041 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-13T10:46:55,042 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-13T10:46:55,044 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-13T10:46:55,046 adding 'omicverse/external/SpatialDE/base.py' 2026-03-13T10:46:55,048 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-13T10:46:55,049 adding 'omicverse/external/SpatialDE/util.py' 2026-03-13T10:46:55,051 adding 'omicverse/external/VIA/__init__.py' 2026-03-13T10:46:55,072 adding 'omicverse/external/VIA/core.py' 2026-03-13T10:46:55,075 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-13T10:46:55,099 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-13T10:46:55,124 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-13T10:46:55,138 adding 'omicverse/external/VIA/utils_via.py' 2026-03-13T10:46:55,140 adding 'omicverse/external/VIA/windmap.py' 2026-03-13T10:46:55,142 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-13T10:46:55,155 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-13T10:46:55,157 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-13T10:46:55,159 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-13T10:46:55,161 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-13T10:46:55,163 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-13T10:46:55,164 adding 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2026-03-13T10:47:01,229 adding 'omicverse/ov_skill_seeker/github_scraper.py' 2026-03-13T10:47:01,230 adding 'omicverse/ov_skill_seeker/link_builder.py' 2026-03-13T10:47:01,231 adding 'omicverse/ov_skill_seeker/pdf_scraper.py' 2026-03-13T10:47:01,233 adding 'omicverse/ov_skill_seeker/security.py' 2026-03-13T10:47:01,235 adding 'omicverse/ov_skill_seeker/unified_builder.py' 2026-03-13T10:47:01,237 adding 'omicverse/pl/__init__.py' 2026-03-13T10:47:01,240 adding 'omicverse/pl/_animation_lines.py' 2026-03-13T10:47:01,244 adding 'omicverse/pl/_bulk.py' 2026-03-13T10:47:01,249 adding 'omicverse/pl/_cpdb.py' 2026-03-13T10:47:01,263 adding 'omicverse/pl/_cpdbviz.py' 2026-03-13T10:47:01,282 adding 'omicverse/pl/_cpdbviz_plus.py' 2026-03-13T10:47:01,285 adding 'omicverse/pl/_density.py' 2026-03-13T10:47:01,290 adding 'omicverse/pl/_dotplot.py' 2026-03-13T10:47:01,292 adding 'omicverse/pl/_embedding.py' 2026-03-13T10:47:01,295 adding 'omicverse/pl/_flowsig.py' 2026-03-13T10:47:01,300 adding 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2026-03-13T10:47:01,358 adding 'omicverse/popv/algorithms/_base_algorithm.py' 2026-03-13T10:47:01,360 adding 'omicverse/popv/algorithms/_bbknn.py' 2026-03-13T10:47:01,361 adding 'omicverse/popv/algorithms/_celltypist.py' 2026-03-13T10:47:01,362 adding 'omicverse/popv/algorithms/_harmony.py' 2026-03-13T10:47:01,364 adding 'omicverse/popv/algorithms/_onclass.py' 2026-03-13T10:47:01,365 adding 'omicverse/popv/algorithms/_rf.py' 2026-03-13T10:47:01,367 adding 'omicverse/popv/algorithms/_scanorama.py' 2026-03-13T10:47:01,368 adding 'omicverse/popv/algorithms/_scanvi.py' 2026-03-13T10:47:01,370 adding 'omicverse/popv/algorithms/_scvi.py' 2026-03-13T10:47:01,371 adding 'omicverse/popv/algorithms/_svm.py' 2026-03-13T10:47:01,372 adding 'omicverse/popv/algorithms/_xgboost.py' 2026-03-13T10:47:01,374 adding 'omicverse/popv/hub/__init__.py' 2026-03-13T10:47:01,375 adding 'omicverse/popv/hub/_get_metrics.py' 2026-03-13T10:47:01,377 adding 'omicverse/popv/hub/_metadata.py' 2026-03-13T10:47:01,379 adding 'omicverse/popv/hub/_model.py' 2026-03-13T10:47:01,380 adding 'omicverse/popv/hub/_template.py' 2026-03-13T10:47:01,382 adding 'omicverse/pp/__init__.py' 2026-03-13T10:47:01,384 adding 'omicverse/pp/_compat.py' 2026-03-13T10:47:01,386 adding 'omicverse/pp/_connectivity.py' 2026-03-13T10:47:01,388 adding 'omicverse/pp/_distributed.py' 2026-03-13T10:47:01,392 adding 'omicverse/pp/_highly_variable_genes.py' 2026-03-13T10:47:01,394 adding 'omicverse/pp/_leiden.py' 2026-03-13T10:47:01,397 adding 'omicverse/pp/_leiden_pyg.py' 2026-03-13T10:47:01,400 adding 'omicverse/pp/_leiden_test.py' 2026-03-13T10:47:01,406 adding 'omicverse/pp/_neighbors.py' 2026-03-13T10:47:01,409 adding 'omicverse/pp/_normalization.py' 2026-03-13T10:47:01,416 adding 'omicverse/pp/_pca.py' 2026-03-13T10:47:01,419 adding 'omicverse/pp/_pca_mlx.py' 2026-03-13T10:47:01,427 adding 'omicverse/pp/_preprocess.py' 2026-03-13T10:47:01,433 adding 'omicverse/pp/_qc.py' 2026-03-13T10:47:01,435 adding 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adding 'omicverse/single/_gptcelltype_local.py' 2026-03-13T10:47:01,542 adding 'omicverse/single/_lazy_checkpoint.py' 2026-03-13T10:47:01,544 adding 'omicverse/single/_lazy_function.py' 2026-03-13T10:47:01,547 adding 'omicverse/single/_lazy_report.py' 2026-03-13T10:47:01,550 adding 'omicverse/single/_lazy_step_by_step.py' 2026-03-13T10:47:01,553 adding 'omicverse/single/_ltnn.py' 2026-03-13T10:47:01,557 adding 'omicverse/single/_markers.py' 2026-03-13T10:47:01,560 adding 'omicverse/single/_mdic3.py' 2026-03-13T10:47:01,562 adding 'omicverse/single/_metacell.py' 2026-03-13T10:47:01,568 adding 'omicverse/single/_milo_dev.py' 2026-03-13T10:47:01,592 adding 'omicverse/single/_mofa.py' 2026-03-13T10:47:01,604 adding 'omicverse/single/_multimap.py' 2026-03-13T10:47:01,607 adding 'omicverse/single/_nocd.py' 2026-03-13T10:47:01,611 adding 'omicverse/single/_pyslingshot.py' 2026-03-13T10:47:01,613 adding 'omicverse/single/_scannorl.py' 2026-03-13T10:47:01,619 adding 'omicverse/single/_sccaf.py' 2026-03-13T10:47:01,623 adding 'omicverse/single/_scdiffusion.py' 2026-03-13T10:47:01,626 adding 'omicverse/single/_scdrug.py' 2026-03-13T10:47:01,631 adding 'omicverse/single/_scenic.py' 2026-03-13T10:47:01,634 adding 'omicverse/single/_scgsea.py' 2026-03-13T10:47:01,636 adding 'omicverse/single/_simba.py' 2026-03-13T10:47:01,639 adding 'omicverse/single/_tosica.py' 2026-03-13T10:47:01,642 adding 'omicverse/single/_traj.py' 2026-03-13T10:47:01,646 adding 'omicverse/single/_velo.py' 2026-03-13T10:47:01,654 adding 'omicverse/single/_via.py' 2026-03-13T10:47:01,657 adding 'omicverse/single/templates/analytics_config.py' 2026-03-13T10:47:01,658 adding 'omicverse/single/templates/analytics_example.py' 2026-03-13T10:47:01,660 adding 'omicverse/single/templates/report_template.html' 2026-03-13T10:47:01,662 adding 'omicverse/single/templates/script.js' 2026-03-13T10:47:01,663 adding 'omicverse/single/templates/sections.html' 2026-03-13T10:47:01,665 adding 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2026-03-13T10:47:01,713 adding 'omicverse/space/_stt.py' 2026-03-13T10:47:01,717 adding 'omicverse/space/_svg.py' 2026-03-13T10:47:01,720 adding 'omicverse/space/_tangram.py' 2026-03-13T10:47:01,726 adding 'omicverse/space/_tools.py' 2026-03-13T10:47:01,730 adding 'omicverse/utils/__init__.py' 2026-03-13T10:47:01,732 adding 'omicverse/utils/_analytics_sender.py' 2026-03-13T10:47:01,737 adding 'omicverse/utils/_anndata_rust_patch.py' 2026-03-13T10:47:01,740 adding 'omicverse/utils/_cluster.py' 2026-03-13T10:47:01,744 adding 'omicverse/utils/_data.py' 2026-03-13T10:47:01,746 adding 'omicverse/utils/_enum.py' 2026-03-13T10:47:01,748 adding 'omicverse/utils/_genomics.py' 2026-03-13T10:47:01,751 adding 'omicverse/utils/_heatmap.py' 2026-03-13T10:47:01,753 adding 'omicverse/utils/_knn.py' 2026-03-13T10:47:01,755 adding 'omicverse/utils/_lsi.py' 2026-03-13T10:47:01,756 adding 'omicverse/utils/_mde.py' 2026-03-13T10:47:01,759 adding 'omicverse/utils/_neighboors.py' 2026-03-13T10:47:01,761 adding 'omicverse/utils/_odds_ratio.py' 2026-03-13T10:47:01,764 adding 'omicverse/utils/_paga.py' 2026-03-13T10:47:01,772 adding 'omicverse/utils/_plot.py' 2026-03-13T10:47:01,775 adding 'omicverse/utils/_resolution.py' 2026-03-13T10:47:01,777 adding 'omicverse/utils/_roe.py' 2026-03-13T10:47:01,785 adding 'omicverse/utils/_scatterplot.py' 2026-03-13T10:47:01,791 adding 'omicverse/utils/_scice.py' 2026-03-13T10:47:01,793 adding 'omicverse/utils/_shannon_diversity.py' 2026-03-13T10:47:01,794 adding 'omicverse/utils/_syn.py' 2026-03-13T10:47:01,796 adding 'omicverse/utils/_venn.py' 2026-03-13T10:47:01,808 adding 'omicverse/utils/agent_backend.py' 2026-03-13T10:47:01,811 adding 'omicverse/utils/agent_config.py' 2026-03-13T10:47:01,812 adding 'omicverse/utils/agent_errors.py' 2026-03-13T10:47:01,813 adding 'omicverse/utils/agent_reporter.py' 2026-03-13T10:47:01,815 adding 'omicverse/utils/agent_sandbox.py' 2026-03-13T10:47:01,817 adding 'omicverse/utils/context_compactor.py' 2026-03-13T10:47:01,821 adding 'omicverse/utils/filesystem_context.py' 2026-03-13T10:47:01,824 adding 'omicverse/utils/model_config.py' 2026-03-13T10:47:01,826 adding 'omicverse/utils/session_history.py' 2026-03-13T10:47:01,830 adding 'omicverse/utils/session_notebook_executor.py' 2026-03-13T10:47:01,834 adding 'omicverse/utils/skill_registry.py' 2026-03-13T10:47:01,852 adding 'omicverse/utils/smart_agent.py' 2026-03-13T10:47:01,854 adding 'omicverse/utils/harness/__init__.py' 2026-03-13T10:47:01,856 adding 'omicverse/utils/harness/cleanup.py' 2026-03-13T10:47:01,857 adding 'omicverse/utils/harness/contracts.py' 2026-03-13T10:47:01,861 adding 'omicverse/utils/harness/runtime_state.py' 2026-03-13T10:47:01,863 adding 'omicverse/utils/harness/server_cli.py' 2026-03-13T10:47:01,865 adding 'omicverse/utils/harness/tool_catalog.py' 2026-03-13T10:47:01,867 adding 'omicverse/utils/harness/trace_store.py' 2026-03-13T10:47:01,869 adding 'omicverse/utils/inspector/__init__.py' 2026-03-13T10:47:01,873 adding 'omicverse/utils/inspector/agent_context_injector.py' 2026-03-13T10:47:01,875 adding 'omicverse/utils/inspector/auto_prerequisite_inserter.py' 2026-03-13T10:47:01,878 adding 'omicverse/utils/inspector/data_state_validator.py' 2026-03-13T10:47:01,879 adding 'omicverse/utils/inspector/data_structures.py' 2026-03-13T10:47:01,881 adding 'omicverse/utils/inspector/examples.py' 2026-03-13T10:47:01,884 adding 'omicverse/utils/inspector/inspector.py' 2026-03-13T10:47:01,886 adding 'omicverse/utils/inspector/llm_formatter.py' 2026-03-13T10:47:01,888 adding 'omicverse/utils/inspector/prerequisite_checker.py' 2026-03-13T10:47:01,891 adding 'omicverse/utils/inspector/production_api.py' 2026-03-13T10:47:01,894 adding 'omicverse/utils/inspector/suggestion_engine.py' 2026-03-13T10:47:01,895 adding 'omicverse/utils/inspector/validators.py' 2026-03-13T10:47:01,898 adding 'omicverse/utils/inspector/workflow_escalator.py' 2026-03-13T10:47:01,900 adding 'omicverse/utils/ovagent/__init__.py' 2026-03-13T10:47:01,904 adding 'omicverse/utils/ovagent/analysis_executor.py' 2026-03-13T10:47:01,907 adding 'omicverse/utils/ovagent/prompt_builder.py' 2026-03-13T10:47:01,908 adding 'omicverse/utils/ovagent/protocol.py' 2026-03-13T10:47:01,910 adding 'omicverse/utils/ovagent/run_store.py' 2026-03-13T10:47:01,911 adding 'omicverse/utils/ovagent/runtime.py' 2026-03-13T10:47:01,913 adding 'omicverse/utils/ovagent/subagent_controller.py' 2026-03-13T10:47:01,918 adding 'omicverse/utils/ovagent/tool_runtime.py' 2026-03-13T10:47:01,923 adding 'omicverse/utils/ovagent/turn_controller.py' 2026-03-13T10:47:01,925 adding 'omicverse/utils/ovagent/workflow.py' 2026-03-13T10:47:01,929 adding 'omicverse/utils/verifier/README.md' 2026-03-13T10:47:01,931 adding 'omicverse/utils/verifier/__init__.py' 2026-03-13T10:47:01,932 adding 'omicverse/utils/verifier/__main__.py' 2026-03-13T10:47:01,935 adding 'omicverse/utils/verifier/cli.py' 2026-03-13T10:47:01,937 adding 'omicverse/utils/verifier/data_structures.py' 2026-03-13T10:47:01,939 adding 'omicverse/utils/verifier/end_to_end_verifier.py' 2026-03-13T10:47:01,941 adding 'omicverse/utils/verifier/llm_skill_selector.py' 2026-03-13T10:47:01,944 adding 'omicverse/utils/verifier/notebook_task_extractor.py' 2026-03-13T10:47:01,946 adding 'omicverse/utils/verifier/skill_description_loader.py' 2026-03-13T10:47:01,948 adding 'omicverse/utils/verifier/skill_description_quality.py' 2026-03-13T10:47:01,954 adding 'omicclaw-2.0.0.dist-info/METADATA' 2026-03-13T10:47:01,956 adding 'omicclaw-2.0.0.dist-info/WHEEL' 2026-03-13T10:47:01,957 adding 'omicclaw-2.0.0.dist-info/entry_points.txt' 2026-03-13T10:47:01,957 adding 'omicclaw-2.0.0.dist-info/top_level.txt' 2026-03-13T10:47:01,978 adding 'omicclaw-2.0.0.dist-info/RECORD' 2026-03-13T10:47:02,133 removing build/bdist.linux-armv7l/wheel 2026-03-13T10:47:02,607 Building wheel for omicclaw (pyproject.toml): finished with status 'done' 2026-03-13T10:47:02,925 Created wheel for omicclaw: filename=omicclaw-2.0.0-py3-none-any.whl size=13173809 sha256=c25022989536e856e9e1a106bd92c1f6afeebf0a21a3a0201f75a20ca8dde8f3 2026-03-13T10:47:02,926 Stored in directory: /tmp/pip-ephem-wheel-cache-qjb4da85/wheels/e3/92/97/c4261675ce06b4ac162b9f285aca62d4a7ee990b6bb9deaa12 2026-03-13T10:47:03,008 Successfully built omicclaw 2026-03-13T10:47:03,348 Removed build tracker: '/tmp/pip-build-tracker-f4rjbj39'