2026-03-13T13:42:54,608 Created temporary directory: /tmp/pip-ephem-wheel-cache-77zacq00 2026-03-13T13:42:54,609 Created temporary directory: /tmp/pip-build-tracker-mcve0xsy 2026-03-13T13:42:54,610 Initialized build tracking at /tmp/pip-build-tracker-mcve0xsy 2026-03-13T13:42:54,611 Created build tracker: /tmp/pip-build-tracker-mcve0xsy 2026-03-13T13:42:54,611 Entered build tracker: /tmp/pip-build-tracker-mcve0xsy 2026-03-13T13:42:54,612 Created temporary directory: /tmp/pip-wheel-a97fg7_q 2026-03-13T13:42:54,614 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T13:42:54,617 Created temporary directory: /tmp/pip-ephem-wheel-cache-uynsi0t8 2026-03-13T13:42:54,639 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T13:42:54,642 2 location(s) to search for versions of goatools: 2026-03-13T13:42:54,642 * https://pypi.org/simple/goatools/ 2026-03-13T13:42:54,642 * https://www.piwheels.org/simple/goatools/ 2026-03-13T13:42:54,643 Fetching project page and analyzing links: https://pypi.org/simple/goatools/ 2026-03-13T13:42:54,643 Getting page https://pypi.org/simple/goatools/ 2026-03-13T13:42:54,645 Found index url https://pypi.org/simple 2026-03-13T13:42:54,782 Fetched page https://pypi.org/simple/goatools/ as application/vnd.pypi.simple.v1+json 2026-03-13T13:42:54,793 Found link https://files.pythonhosted.org/packages/68/9f/aac469a604a671f2fb8af43abbc9a3baf9f4b89dc121a1069b022a01d33c/goatools-0.4.7.tar.gz (from 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https://files.pythonhosted.org/packages/e8/8f/b0520563d521c670627b2b636f0480613444c04395eb95a0177269b4fb6b/goatools-1.2.3.tar.gz (from https://pypi.org/simple/goatools/), version: 1.2.3 2026-03-13T13:42:54,814 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/26/16/eea88e34534664ccac4be340e1c70763bf1277cbb20aa328a4630ce9daf8/goatools-1.2.4-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,815 Found link https://files.pythonhosted.org/packages/e5/0d/f95ca21e321bf9ef146885548b6d7d6f564e744c2020578575fda9db8d06/goatools-1.2.4.tar.gz (from https://pypi.org/simple/goatools/), version: 1.2.4 2026-03-13T13:42:54,816 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/60/6d/3abdbd7b013c86b700c66858f105148a001108715a1ae7efa967594ae2d2/goatools-1.3.1-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,816 Found link https://files.pythonhosted.org/packages/43/e0/29f0c8c11c0dc6e8b34f6293b1418144d14d47e3423760691c6304f804d0/goatools-1.3.1.tar.gz (from https://pypi.org/simple/goatools/), version: 1.3.1 2026-03-13T13:42:54,817 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/bb/55/babccac3561aa862c0eb0dbffbf082ba5f5e8037a1d62d425cc902d46f4e/goatools-1.3.9-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,817 Found link https://files.pythonhosted.org/packages/f4/f5/ff606d413247a3d2843cbcb7753c54088d2019a921b268651936b51061fc/goatools-1.3.9.tar.gz (from https://pypi.org/simple/goatools/), version: 1.3.9 2026-03-13T13:42:54,818 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/98/6d/8c3a3f2b77c17ef37e96d69ee49ef62c18d72d2c6e507fa5046d6f47082e/goatools-1.3.11-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,818 Found link https://files.pythonhosted.org/packages/16/04/f65a4e52bc2105ae622fb9b20fc9aea3a8cdfd2c7951f16cef7d8b075352/goatools-1.3.11.tar.gz (from https://pypi.org/simple/goatools/), version: 1.3.11 2026-03-13T13:42:54,819 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/95/7f/dff20d88af8fdfe8163f7d561530175a52d39286ed1347c3a53e781c56cf/goatools-1.4.4-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,819 Found link https://files.pythonhosted.org/packages/bf/ae/328650c91f3aa84824f7a3025474faffd6d7c563a4c3edfb740fcb795e45/goatools-1.4.4.tar.gz (from https://pypi.org/simple/goatools/), version: 1.4.4 2026-03-13T13:42:54,820 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/33/fd/fcc6653c3153061b76ca4de3e5ea9f3a5da2eeb8fee0708625cfb260a468/goatools-1.4.5-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,821 Found link https://files.pythonhosted.org/packages/5f/5b/d8c58daa81be087d3cc1b1f72253b004c27acd91eac043ac004a69cba4ec/goatools-1.4.5.tar.gz (from https://pypi.org/simple/goatools/), version: 1.4.5 2026-03-13T13:42:54,821 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/e7/6b/ce396d275a91f18eab1a64e53aa1654d22b4f019c47ac9751ed29c086acd/goatools-1.4.9-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,822 Found link https://files.pythonhosted.org/packages/0e/94/92eddd77b1acab8053878a1aa56e384bd369c2eadb3cb1eda183ed82a94c/goatools-1.4.9.tar.gz (from https://pypi.org/simple/goatools/), version: 1.4.9 2026-03-13T13:42:54,822 Skipping link: No binaries permitted for goatools: https://files.pythonhosted.org/packages/03/1c/7dc89b8dbfa73e858b60befde4f9ec2f225fbe5411c047c478015a2c55c4/goatools-1.4.11-py3-none-any.whl (from https://pypi.org/simple/goatools/) 2026-03-13T13:42:54,823 Found link 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as text/html 2026-03-13T13:42:55,012 Skipping link: No binaries permitted for goatools: https://www.piwheels.org/simple/goatools/goatools-1.6.2-py3-none-any.whl#sha256=15004a009c9bde483062226d00f6691b43d4477b9a5f0aa482072375e52c94aa (from https://www.piwheels.org/simple/goatools/) 2026-03-13T13:42:55,013 Skipping link: No binaries permitted for goatools: https://www.piwheels.org/simple/goatools/goatools-1.6.1-py3-none-any.whl#sha256=a6c566967be18105a7cca2d2c7dcd8772ddab0092cf0cca406028adc2e9de339 (from https://www.piwheels.org/simple/goatools/) 2026-03-13T13:42:55,013 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-1.5.2-py3-none-any.whl#sha256=b089e8091842d5e4225c3dae2874d138b69633746178b4d016a834feaaa6271a (from https://www.piwheels.org/simple/goatools/) 2026-03-13T13:42:55,014 Skipping link: No binaries permitted for goatools: 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https://www.piwheels.org/simple/goatools/) 2026-03-13T13:42:55,035 Skipping link: not a file: https://www.piwheels.org/simple/goatools/ 2026-03-13T13:42:55,036 Skipping link: not a file: https://pypi.org/simple/goatools/ 2026-03-13T13:42:55,060 Given no hashes to check 1 links for project 'goatools': discarding no candidates 2026-03-13T13:42:55,078 Collecting goatools==1.6.3 2026-03-13T13:42:55,080 Created temporary directory: /tmp/pip-unpack-3exrd7eb 2026-03-13T13:42:55,295 Downloading goatools-1.6.3.tar.gz (17.8 MB) 2026-03-13T13:43:01,846 Added goatools==1.6.3 from https://files.pythonhosted.org/packages/8f/51/510352df3d5a1e287d26953aaad43c2e616b06b51a5e3cb5fa328969029b/goatools-1.6.3.tar.gz to build tracker '/tmp/pip-build-tracker-mcve0xsy' 2026-03-13T13:43:01,853 Created temporary directory: /tmp/pip-build-env-jcigg9ep 2026-03-13T13:43:01,857 Installing build dependencies: started 2026-03-13T13:43:01,858 Running command pip subprocess to install build dependencies 2026-03-13T13:43:03,006 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T13:43:03,626 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T13:43:03,649 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T13:43:05,386 Collecting setuptools 2026-03-13T13:43:05,482 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-13T13:43:05,877 Collecting setuptools_scm[toml] 2026-03-13T13:43:05,897 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-03-13T13:43:05,971 Collecting setuptools_scm_git_archive 2026-03-13T13:43:05,987 Using cached https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl (3.3 kB) 2026-03-13T13:43:06,211 Collecting wheel 2026-03-13T13:43:06,258 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T13:43:06,453 Collecting packaging>=20 2026-03-13T13:43:06,471 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T13:43:09,515 Installing collected packages: setuptools_scm_git_archive, setuptools, packaging, wheel, setuptools_scm 2026-03-13T13:43:13,546 Creating /tmp/pip-build-env-jcigg9ep/overlay/local/bin 2026-03-13T13:43:13,548 changing mode of /tmp/pip-build-env-jcigg9ep/overlay/local/bin/wheel to 755 2026-03-13T13:43:13,802 changing mode of /tmp/pip-build-env-jcigg9ep/overlay/local/bin/setuptools-scm to 755 2026-03-13T13:43:13,839 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools_scm-9.2.2 setuptools_scm_git_archive-1.4.1 wheel-0.46.3 2026-03-13T13:43:14,133 Installing build dependencies: finished with status 'done' 2026-03-13T13:43:14,139 Getting requirements to build wheel: started 2026-03-13T13:43:14,141 Running command Getting requirements to build wheel 2026-03-13T13:43:14,689 /tmp/pip-build-env-jcigg9ep/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T13:43:14,689 !! 2026-03-13T13:43:14,690 ******************************************************************************** 2026-03-13T13:43:14,691 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T13:43:14,692 License :: OSI Approved :: BSD License 2026-03-13T13:43:14,693 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T13:43:14,694 ******************************************************************************** 2026-03-13T13:43:14,695 !! 2026-03-13T13:43:14,696 self._finalize_license_expression() 2026-03-13T13:43:14,831 running egg_info 2026-03-13T13:43:14,839 writing goatools.egg-info/PKG-INFO 2026-03-13T13:43:14,844 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T13:43:14,847 writing entry points to goatools.egg-info/entry_points.txt 2026-03-13T13:43:14,849 writing requirements to goatools.egg-info/requires.txt 2026-03-13T13:43:14,850 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T13:43:15,132 listing git files failed - pretending there aren't any 2026-03-13T13:43:15,137 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:15,153 reading manifest template 'MANIFEST.in' 2026-03-13T13:43:15,154 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T13:43:15,155 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T13:43:15,156 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T13:43:15,157 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T13:43:15,158 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T13:43:15,159 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T13:43:15,160 warning: no previously-included files found matching '.*' 2026-03-13T13:43:15,160 adding license file 'LICENSE' 2026-03-13T13:43:15,170 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:15,265 Getting requirements to build wheel: finished with status 'done' 2026-03-13T13:43:15,268 Created temporary directory: /tmp/pip-modern-metadata-aq256fc2 2026-03-13T13:43:15,271 Preparing metadata (pyproject.toml): started 2026-03-13T13:43:15,272 Running command Preparing metadata (pyproject.toml) 2026-03-13T13:43:15,881 /tmp/pip-build-env-jcigg9ep/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T13:43:15,882 !! 2026-03-13T13:43:15,883 ******************************************************************************** 2026-03-13T13:43:15,883 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T13:43:15,884 License :: OSI Approved :: BSD License 2026-03-13T13:43:15,885 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T13:43:15,886 ******************************************************************************** 2026-03-13T13:43:15,887 !! 2026-03-13T13:43:15,887 self._finalize_license_expression() 2026-03-13T13:43:15,909 running dist_info 2026-03-13T13:43:15,926 creating /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info 2026-03-13T13:43:15,927 writing /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/PKG-INFO 2026-03-13T13:43:15,931 writing dependency_links to /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/dependency_links.txt 2026-03-13T13:43:15,933 writing entry points to /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/entry_points.txt 2026-03-13T13:43:15,935 writing requirements to /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/requires.txt 2026-03-13T13:43:15,936 writing top-level names to /tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/top_level.txt 2026-03-13T13:43:15,937 writing manifest file '/tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:16,008 listing git files failed - pretending there aren't any 2026-03-13T13:43:16,013 reading manifest file '/tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:16,015 reading manifest template 'MANIFEST.in' 2026-03-13T13:43:16,016 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T13:43:16,017 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T13:43:16,017 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T13:43:16,018 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T13:43:16,019 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T13:43:16,020 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T13:43:16,020 warning: no previously-included files found matching '.*' 2026-03-13T13:43:16,021 adding license file 'LICENSE' 2026-03-13T13:43:16,027 writing manifest file '/tmp/pip-modern-metadata-aq256fc2/goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:16,029 creating '/tmp/pip-modern-metadata-aq256fc2/goatools-1.6.3.dist-info' 2026-03-13T13:43:16,163 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T13:43:16,169 Source in /tmp/pip-wheel-a97fg7_q/goatools_a8ceb4f2f8674068a03547007226ae04 has version 1.6.3, which satisfies requirement goatools==1.6.3 from https://files.pythonhosted.org/packages/8f/51/510352df3d5a1e287d26953aaad43c2e616b06b51a5e3cb5fa328969029b/goatools-1.6.3.tar.gz 2026-03-13T13:43:16,170 Removed goatools==1.6.3 from https://files.pythonhosted.org/packages/8f/51/510352df3d5a1e287d26953aaad43c2e616b06b51a5e3cb5fa328969029b/goatools-1.6.3.tar.gz from build tracker '/tmp/pip-build-tracker-mcve0xsy' 2026-03-13T13:43:16,175 Created temporary directory: /tmp/pip-unpack-9fhjgiji 2026-03-13T13:43:16,176 Building wheels for collected packages: goatools 2026-03-13T13:43:16,180 Created temporary directory: /tmp/pip-wheel-wwua1z2p 2026-03-13T13:43:16,181 Destination directory: /tmp/pip-wheel-wwua1z2p 2026-03-13T13:43:16,183 Building wheel for goatools (pyproject.toml): started 2026-03-13T13:43:16,184 Running command Building wheel for goatools (pyproject.toml) 2026-03-13T13:43:16,785 /tmp/pip-build-env-jcigg9ep/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T13:43:16,786 !! 2026-03-13T13:43:16,787 ******************************************************************************** 2026-03-13T13:43:16,787 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T13:43:16,788 License :: OSI Approved :: BSD License 2026-03-13T13:43:16,789 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T13:43:16,790 ******************************************************************************** 2026-03-13T13:43:16,791 !! 2026-03-13T13:43:16,791 self._finalize_license_expression() 2026-03-13T13:43:16,816 running bdist_wheel 2026-03-13T13:43:16,850 running build 2026-03-13T13:43:16,851 running build_py 2026-03-13T13:43:16,862 creating build/lib/goatools 2026-03-13T13:43:16,864 copying goatools/obo_parser.py -> build/lib/goatools 2026-03-13T13:43:16,867 copying goatools/utils.py -> build/lib/goatools 2026-03-13T13:43:16,869 copying goatools/wr_tbl_class.py -> build/lib/goatools 2026-03-13T13:43:16,872 copying goatools/associations.py -> build/lib/goatools 2026-03-13T13:43:16,875 copying goatools/semantic.py -> build/lib/goatools 2026-03-13T13:43:16,877 copying goatools/ratio.py -> build/lib/goatools 2026-03-13T13:43:16,879 copying goatools/pvalcalc.py -> build/lib/goatools 2026-03-13T13:43:16,881 copying goatools/mapslim.py -> build/lib/goatools 2026-03-13T13:43:16,883 copying goatools/godag_plot.py -> build/lib/goatools 2026-03-13T13:43:16,886 copying goatools/multiple_testing.py -> build/lib/goatools 2026-03-13T13:43:16,888 copying goatools/randseed.py -> build/lib/goatools 2026-03-13T13:43:16,890 copying goatools/statsdescribe.py -> build/lib/goatools 2026-03-13T13:43:16,892 copying goatools/godag_obosm.py -> build/lib/goatools 2026-03-13T13:43:16,894 copying goatools/go_search.py -> build/lib/goatools 2026-03-13T13:43:16,897 copying goatools/obo_tasks.py -> build/lib/goatools 2026-03-13T13:43:16,898 copying goatools/nt_utils.py -> build/lib/goatools 2026-03-13T13:43:16,901 copying goatools/wr_tbl.py -> build/lib/goatools 2026-03-13T13:43:16,903 copying goatools/evidence_codes.py -> build/lib/goatools 2026-03-13T13:43:16,905 copying goatools/__init__.py -> build/lib/goatools 2026-03-13T13:43:16,907 copying goatools/__main__.py -> build/lib/goatools 2026-03-13T13:43:16,909 copying goatools/godag_small.py -> build/lib/goatools 2026-03-13T13:43:16,911 copying goatools/base.py -> build/lib/goatools 2026-03-13T13:43:16,914 copying goatools/go_enrichment.py -> build/lib/goatools 2026-03-13T13:43:16,917 copying goatools/version.py -> build/lib/goatools 2026-03-13T13:43:16,920 creating build/lib/goatools/godag 2026-03-13T13:43:16,921 copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag 2026-03-13T13:43:16,923 copying goatools/godag/typedef.py -> build/lib/goatools/godag 2026-03-13T13:43:16,925 copying goatools/godag/__init__.py -> build/lib/goatools/godag 2026-03-13T13:43:16,927 copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag 2026-03-13T13:43:16,929 copying goatools/godag/reldepth.py -> build/lib/goatools/godag 2026-03-13T13:43:16,932 copying goatools/godag/go_tasks.py -> build/lib/goatools/godag 2026-03-13T13:43:16,934 copying goatools/godag/prttime.py -> build/lib/goatools/godag 2026-03-13T13:43:16,936 copying goatools/godag/prtfncs.py -> build/lib/goatools/godag 2026-03-13T13:43:16,938 copying goatools/godag/consts.py -> build/lib/goatools/godag 2026-03-13T13:43:16,939 copying goatools/godag/relationship_str.py -> build/lib/goatools/godag 2026-03-13T13:43:16,942 creating build/lib/goatools/gosubdag 2026-03-13T13:43:16,943 copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,945 copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,947 copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,949 copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,951 copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,953 copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,956 copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,958 copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,960 copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,962 copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag 2026-03-13T13:43:16,965 creating build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,966 copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,968 copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,970 copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,972 copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,975 copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,977 copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,979 copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,982 copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot 2026-03-13T13:43:16,984 creating build/lib/goatools/gosubdag/rpt 2026-03-13T13:43:16,985 copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T13:43:16,988 copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T13:43:16,990 copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T13:43:16,993 creating build/lib/goatools/test_data 2026-03-13T13:43:16,994 copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data 2026-03-13T13:43:16,996 copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data 2026-03-13T13:43:17,102 copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data 2026-03-13T13:43:17,201 copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data 2026-03-13T13:43:17,637 copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data 2026-03-13T13:43:17,815 copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data 2026-03-13T13:43:17,931 copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,097 copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,150 copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,242 copying goatools/test_data/sorter.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,244 copying goatools/test_data/__init__.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,246 copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,248 copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,564 copying goatools/test_data/checks.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,566 copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,640 copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,762 copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,764 copying goatools/test_data/gafs.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,765 copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data 2026-03-13T13:43:18,776 creating build/lib/goatools/test_data/sections 2026-03-13T13:43:18,777 copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections 2026-03-13T13:43:18,781 copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections 2026-03-13T13:43:18,782 copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections 2026-03-13T13:43:18,785 copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections 2026-03-13T13:43:18,788 creating build/lib/goatools/test_data/cli 2026-03-13T13:43:18,789 copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli 2026-03-13T13:43:18,790 copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli 2026-03-13T13:43:18,793 creating build/lib/goatools/cli 2026-03-13T13:43:18,794 copying goatools/cli/prt_terms.py -> build/lib/goatools/cli 2026-03-13T13:43:18,796 copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli 2026-03-13T13:43:18,798 copying goatools/cli/map_to_slim.py -> build/lib/goatools/cli 2026-03-13T13:43:18,800 copying goatools/cli/grouped.py -> build/lib/goatools/cli 2026-03-13T13:43:18,802 copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli 2026-03-13T13:43:18,805 copying goatools/cli/gos_get.py -> build/lib/goatools/cli 2026-03-13T13:43:18,807 copying goatools/cli/compare_gos.py -> build/lib/goatools/cli 2026-03-13T13:43:18,809 copying goatools/cli/fetch_associations.py -> build/lib/goatools/cli 2026-03-13T13:43:18,811 copying goatools/cli/__init__.py -> build/lib/goatools/cli 2026-03-13T13:43:18,813 copying goatools/cli/wr_sections.py -> build/lib/goatools/cli 2026-03-13T13:43:18,815 copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli 2026-03-13T13:43:18,818 copying goatools/cli/main.py -> build/lib/goatools/cli 2026-03-13T13:43:18,820 copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli 2026-03-13T13:43:18,823 copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli 2026-03-13T13:43:18,825 copying goatools/cli/plot_go_term.py -> build/lib/goatools/cli 2026-03-13T13:43:18,828 creating build/lib/goatools/rpt 2026-03-13T13:43:18,829 copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,831 copying goatools/rpt/__init__.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,833 copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,835 copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,837 copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,839 copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt 2026-03-13T13:43:18,842 creating build/lib/goatools/anno 2026-03-13T13:43:18,843 copying goatools/anno/update_association.py -> build/lib/goatools/anno 2026-03-13T13:43:18,845 copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno 2026-03-13T13:43:18,847 copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno 2026-03-13T13:43:18,849 copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno 2026-03-13T13:43:18,851 copying goatools/anno/opts.py -> build/lib/goatools/anno 2026-03-13T13:43:18,853 copying goatools/anno/broad_gos.py -> build/lib/goatools/anno 2026-03-13T13:43:18,855 copying goatools/anno/__init__.py -> build/lib/goatools/anno 2026-03-13T13:43:18,857 copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno 2026-03-13T13:43:18,858 copying goatools/anno/factory.py -> build/lib/goatools/anno 2026-03-13T13:43:18,860 copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno 2026-03-13T13:43:18,862 copying goatools/anno/eco2group.py -> build/lib/goatools/anno 2026-03-13T13:43:18,865 copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno 2026-03-13T13:43:18,868 creating build/lib/goatools/anno/init 2026-03-13T13:43:18,869 copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,870 copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,873 copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,875 copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,877 copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,879 copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init 2026-03-13T13:43:18,882 creating build/lib/goatools/anno/extensions 2026-03-13T13:43:18,883 copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions 2026-03-13T13:43:18,885 copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions 2026-03-13T13:43:18,887 copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions 2026-03-13T13:43:18,888 copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions 2026-03-13T13:43:18,891 creating build/lib/goatools/goea 2026-03-13T13:43:18,892 copying goatools/goea/__init__.py -> build/lib/goatools/goea 2026-03-13T13:43:18,893 copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea 2026-03-13T13:43:18,896 creating build/lib/goatools/grouper 2026-03-13T13:43:18,897 copying goatools/grouper/utils.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,899 copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,901 copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,903 copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,905 copying goatools/grouper/tasks.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,907 copying goatools/grouper/colors.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,909 copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,911 copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,914 copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,916 copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,918 copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,921 copying goatools/grouper/sorter.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,923 copying goatools/grouper/__init__.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,925 copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,927 copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,929 copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,931 copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,933 copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper 2026-03-13T13:43:18,936 creating build/lib/goatools/parsers 2026-03-13T13:43:18,937 copying goatools/parsers/__init__.py -> build/lib/goatools/parsers 2026-03-13T13:43:18,939 copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers 2026-03-13T13:43:18,941 copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers 2026-03-13T13:43:18,943 creating build/lib/goatools/semsim 2026-03-13T13:43:18,944 copying goatools/semsim/__init__.py -> build/lib/goatools/semsim 2026-03-13T13:43:18,946 creating build/lib/goatools/semsim/termwise 2026-03-13T13:43:18,947 copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise 2026-03-13T13:43:18,949 copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise 2026-03-13T13:43:18,951 copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise 2026-03-13T13:43:18,952 running egg_info 2026-03-13T13:43:18,965 writing goatools.egg-info/PKG-INFO 2026-03-13T13:43:18,969 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T13:43:18,970 writing entry points to goatools.egg-info/entry_points.txt 2026-03-13T13:43:18,971 writing requirements to goatools.egg-info/requires.txt 2026-03-13T13:43:18,972 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T13:43:19,024 listing git files failed - pretending there aren't any 2026-03-13T13:43:19,028 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:19,039 reading manifest template 'MANIFEST.in' 2026-03-13T13:43:19,041 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T13:43:19,042 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T13:43:19,043 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T13:43:19,044 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T13:43:19,044 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T13:43:19,045 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T13:43:19,046 warning: no previously-included files found matching '.*' 2026-03-13T13:43:19,047 adding license file 'LICENSE' 2026-03-13T13:43:19,056 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T13:43:19,060 /tmp/pip-build-env-jcigg9ep/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. 2026-03-13T13:43:19,061 !! 2026-03-13T13:43:19,062 ******************************************************************************** 2026-03-13T13:43:19,062 ############################ 2026-03-13T13:43:19,063 # Package would be ignored # 2026-03-13T13:43:19,063 ############################ 2026-03-13T13:43:19,064 Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], 2026-03-13T13:43:19,064 but it is absent from setuptools' `packages` configuration. 2026-03-13T13:43:19,066 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T13:43:19,066 package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added 2026-03-13T13:43:19,067 to the `packages` configuration field. 2026-03-13T13:43:19,068 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T13:43:19,068 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T13:43:19,069 instead of `find_packages(...)`/`find:`). 2026-03-13T13:43:19,070 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T13:43:19,071 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T13:43:19,072 If you don't want 'goatools.test_data.nbt_3102' to be distributed and are 2026-03-13T13:43:19,072 already explicitly excluding 'goatools.test_data.nbt_3102' via 2026-03-13T13:43:19,073 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T13:43:19,074 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T13:43:19,074 combination with a more fine grained `package-data` configuration. 2026-03-13T13:43:19,075 You can read more about "package data files" on setuptools documentation page: 2026-03-13T13:43:19,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T13:43:19,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T13:43:19,077 even if it does not contain any `.py` files. 2026-03-13T13:43:19,078 On the other hand, currently there is no concept of package data 2026-03-13T13:43:19,078 directory, all directories are treated like packages. 2026-03-13T13:43:19,079 ******************************************************************************** 2026-03-13T13:43:19,080 !! 2026-03-13T13:43:19,080 check.warn(importable) 2026-03-13T13:43:19,081 copying goatools/.gitignore -> build/lib/goatools 2026-03-13T13:43:19,081 creating build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,082 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,082 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,083 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,083 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,086 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,090 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,093 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T13:43:19,121 installing to build/bdist.linux-armv7l/wheel 2026-03-13T13:43:19,122 running install 2026-03-13T13:43:19,146 running install_lib 2026-03-13T13:43:19,155 creating build/bdist.linux-armv7l/wheel 2026-03-13T13:43:19,158 creating build/bdist.linux-armv7l/wheel/goatools 2026-03-13T13:43:19,159 copying build/lib/goatools/obo_parser.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,161 copying build/lib/goatools/utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,163 copying build/lib/goatools/wr_tbl_class.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,166 copying build/lib/goatools/associations.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,168 copying build/lib/goatools/semantic.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,171 creating build/bdist.linux-armv7l/wheel/goatools/rpt 2026-03-13T13:43:19,172 copying build/lib/goatools/rpt/write_hierarchy_base.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,174 copying build/lib/goatools/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,176 copying build/lib/goatools/rpt/prtfmt.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,177 copying build/lib/goatools/rpt/rpt_lev_depth.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,180 copying build/lib/goatools/rpt/nts_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,182 copying build/lib/goatools/rpt/goea_nt_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T13:43:19,184 copying build/lib/goatools/.gitignore -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,186 creating build/bdist.linux-armv7l/wheel/goatools/semsim 2026-03-13T13:43:19,187 copying build/lib/goatools/semsim/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim 2026-03-13T13:43:19,190 creating build/bdist.linux-armv7l/wheel/goatools/semsim/termwise 2026-03-13T13:43:19,191 copying build/lib/goatools/semsim/termwise/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T13:43:19,193 copying build/lib/goatools/semsim/termwise/wang.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T13:43:19,195 copying build/lib/goatools/semsim/termwise/dag_a.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T13:43:19,197 creating build/bdist.linux-armv7l/wheel/goatools/parsers 2026-03-13T13:43:19,198 copying build/lib/goatools/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T13:43:19,200 copying build/lib/goatools/parsers/david_chart.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T13:43:19,202 copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T13:43:19,205 copying build/lib/goatools/ratio.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,208 creating build/bdist.linux-armv7l/wheel/goatools/grouper 2026-03-13T13:43:19,209 copying build/lib/goatools/grouper/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,211 copying build/lib/goatools/grouper/aart_geneproducts_all.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,213 copying build/lib/goatools/grouper/grprdflts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,215 copying build/lib/goatools/grouper/grprobj_init.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,217 copying build/lib/goatools/grouper/tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,219 copying build/lib/goatools/grouper/colors.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,221 copying build/lib/goatools/grouper/read_goids.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,223 copying build/lib/goatools/grouper/aart_geneproducts_one.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,225 copying build/lib/goatools/grouper/plotobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,228 copying build/lib/goatools/grouper/sorter_nts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,230 copying build/lib/goatools/grouper/grprobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,233 copying build/lib/goatools/grouper/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,235 copying build/lib/goatools/grouper/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,237 copying build/lib/goatools/grouper/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,239 copying build/lib/goatools/grouper/grprplt.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,241 copying build/lib/goatools/grouper/wrxlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,244 copying build/lib/goatools/grouper/hdrgos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,246 copying build/lib/goatools/grouper/sorter_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T13:43:19,248 copying build/lib/goatools/pvalcalc.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:19,251 creating build/bdist.linux-armv7l/wheel/goatools/godag 2026-03-13T13:43:19,252 copying build/lib/goatools/godag/relationship_combos.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,254 copying build/lib/goatools/godag/typedef.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,256 copying build/lib/goatools/godag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,258 copying build/lib/goatools/godag/obo_optional_attributes.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,260 copying build/lib/goatools/godag/reldepth.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,262 copying build/lib/goatools/godag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,264 copying build/lib/goatools/godag/prttime.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,266 copying build/lib/goatools/godag/prtfncs.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,268 copying build/lib/goatools/godag/consts.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,270 copying build/lib/goatools/godag/relationship_str.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T13:43:19,272 creating build/bdist.linux-armv7l/wheel/goatools/test_data 2026-03-13T13:43:19,273 copying build/lib/goatools/test_data/godag_timed.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:19,275 copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:19,492 copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:19,582 copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:20,016 copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:20,433 copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:20,720 copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:20,986 copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,040 creating build/bdist.linux-armv7l/wheel/goatools/test_data/sections 2026-03-13T13:43:21,042 copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T13:43:21,044 copying build/lib/goatools/test_data/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T13:43:21,046 copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T13:43:21,049 copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T13:43:21,051 copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,142 copying build/lib/goatools/test_data/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,145 copying build/lib/goatools/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,146 copying build/lib/goatools/test_data/nature3102_goea.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,149 creating build/bdist.linux-armv7l/wheel/goatools/test_data/cli 2026-03-13T13:43:21,150 copying build/lib/goatools/test_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T13:43:21,152 copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T13:43:21,201 copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,405 copying build/lib/goatools/test_data/checks.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,407 creating build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 2026-03-13T13:43:21,409 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,411 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,414 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,415 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,418 copying build/lib/goatools/test_data/nbt_3102/README.md -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,420 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,422 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T13:43:21,424 copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,500 copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,620 copying build/lib/goatools/test_data/wr_subobo.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,622 copying build/lib/goatools/test_data/gafs.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,624 copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T13:43:21,634 copying build/lib/goatools/mapslim.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,636 copying build/lib/goatools/godag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,638 copying build/lib/goatools/multiple_testing.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,640 copying build/lib/goatools/randseed.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,642 copying build/lib/goatools/statsdescribe.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,644 copying build/lib/goatools/godag_obosm.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,647 copying build/lib/goatools/go_search.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,649 copying build/lib/goatools/obo_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,651 copying build/lib/goatools/nt_utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,654 creating build/bdist.linux-armv7l/wheel/goatools/goea 2026-03-13T13:43:21,655 copying build/lib/goatools/goea/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T13:43:21,657 copying build/lib/goatools/goea/go_enrichment_ns.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T13:43:21,658 copying build/lib/goatools/wr_tbl.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,661 copying build/lib/goatools/evidence_codes.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,663 copying build/lib/goatools/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,665 copying build/lib/goatools/__main__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,667 creating build/bdist.linux-armv7l/wheel/goatools/cli 2026-03-13T13:43:21,668 copying build/lib/goatools/cli/prt_terms.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,670 copying build/lib/goatools/cli/docopt_parse.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,673 copying build/lib/goatools/cli/map_to_slim.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,674 copying build/lib/goatools/cli/grouped.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,676 copying build/lib/goatools/cli/wr_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,678 copying build/lib/goatools/cli/gos_get.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,681 copying build/lib/goatools/cli/compare_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,683 copying build/lib/goatools/cli/fetch_associations.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,685 copying build/lib/goatools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,686 copying build/lib/goatools/cli/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,689 copying build/lib/goatools/cli/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,691 copying build/lib/goatools/cli/main.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,693 copying build/lib/goatools/cli/find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,696 copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,698 copying build/lib/goatools/cli/plot_go_term.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T13:43:21,700 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag 2026-03-13T13:43:21,701 copying build/lib/goatools/gosubdag/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,704 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/rpt 2026-03-13T13:43:21,705 copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T13:43:21,707 copying build/lib/goatools/gosubdag/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T13:43:21,709 copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T13:43:21,711 copying build/lib/goatools/gosubdag/go_edges.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,713 copying build/lib/goatools/gosubdag/godag_rcnt.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,715 copying build/lib/goatools/gosubdag/go_paths.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,717 copying build/lib/goatools/gosubdag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,720 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/plot 2026-03-13T13:43:21,721 copying build/lib/goatools/gosubdag/plot/go_edge.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,723 copying build/lib/goatools/gosubdag/plot/plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,725 copying build/lib/goatools/gosubdag/plot/go2color.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,727 copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,729 copying build/lib/goatools/gosubdag/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,731 copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,733 copying build/lib/goatools/gosubdag/plot/go_node.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,736 copying build/lib/goatools/gosubdag/plot/goea_results.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T13:43:21,738 copying build/lib/goatools/gosubdag/gosubdag_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,741 copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,743 copying build/lib/goatools/gosubdag/gosubdag.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,745 copying build/lib/goatools/gosubdag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,747 copying build/lib/goatools/gosubdag/go_most_specific.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T13:43:21,749 copying build/lib/goatools/godag_small.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,750 copying build/lib/goatools/base.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,753 creating build/bdist.linux-armv7l/wheel/goatools/anno 2026-03-13T13:43:21,754 copying build/lib/goatools/anno/update_association.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,756 copying build/lib/goatools/anno/dnld_ebi_goa.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,758 copying build/lib/goatools/anno/gpad_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,760 copying build/lib/goatools/anno/idtogos_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,762 creating build/bdist.linux-armv7l/wheel/goatools/anno/init 2026-03-13T13:43:21,763 copying build/lib/goatools/anno/init/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,765 copying build/lib/goatools/anno/init/reader_idtogos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,767 copying build/lib/goatools/anno/init/reader_gaf.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,769 copying build/lib/goatools/anno/init/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,771 copying build/lib/goatools/anno/init/reader_gpad.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,774 copying build/lib/goatools/anno/init/reader_genetogo.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T13:43:21,776 copying build/lib/goatools/anno/opts.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,778 copying build/lib/goatools/anno/broad_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,780 copying build/lib/goatools/anno/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,782 creating build/bdist.linux-armv7l/wheel/goatools/anno/extensions 2026-03-13T13:43:21,784 copying build/lib/goatools/anno/extensions/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T13:43:21,785 copying build/lib/goatools/anno/extensions/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T13:43:21,787 copying build/lib/goatools/anno/extensions/extension.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T13:43:21,789 copying build/lib/goatools/anno/extensions/extensions.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T13:43:21,791 copying build/lib/goatools/anno/gaf_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,792 copying build/lib/goatools/anno/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,794 copying build/lib/goatools/anno/genetogo_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,797 copying build/lib/goatools/anno/eco2group.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,799 copying build/lib/goatools/anno/annoreader_base.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T13:43:21,802 copying build/lib/goatools/go_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,804 copying build/lib/goatools/version.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T13:43:21,806 running install_egg_info 2026-03-13T13:43:21,818 Copying goatools.egg-info to build/bdist.linux-armv7l/wheel/./goatools-1.6.3-py3.11.egg-info 2026-03-13T13:43:21,829 running install_scripts 2026-03-13T13:43:21,841 creating build/bdist.linux-armv7l/wheel/goatools-1.6.3.dist-info/WHEEL 2026-03-13T13:43:21,843 creating '/tmp/pip-wheel-wwua1z2p/.tmp-4ejequbb/goatools-1.6.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T13:43:21,846 adding 'goatools/.gitignore' 2026-03-13T13:43:21,847 adding 'goatools/__init__.py' 2026-03-13T13:43:21,848 adding 'goatools/__main__.py' 2026-03-13T13:43:21,850 adding 'goatools/associations.py' 2026-03-13T13:43:21,852 adding 'goatools/base.py' 2026-03-13T13:43:21,854 adding 'goatools/evidence_codes.py' 2026-03-13T13:43:21,857 adding 'goatools/go_enrichment.py' 2026-03-13T13:43:21,859 adding 'goatools/go_search.py' 2026-03-13T13:43:21,860 adding 'goatools/godag_obosm.py' 2026-03-13T13:43:21,862 adding 'goatools/godag_plot.py' 2026-03-13T13:43:21,864 adding 'goatools/godag_small.py' 2026-03-13T13:43:21,865 adding 'goatools/mapslim.py' 2026-03-13T13:43:21,867 adding 'goatools/multiple_testing.py' 2026-03-13T13:43:21,868 adding 'goatools/nt_utils.py' 2026-03-13T13:43:21,871 adding 'goatools/obo_parser.py' 2026-03-13T13:43:21,873 adding 'goatools/obo_tasks.py' 2026-03-13T13:43:21,874 adding 'goatools/pvalcalc.py' 2026-03-13T13:43:21,875 adding 'goatools/randseed.py' 2026-03-13T13:43:21,877 adding 'goatools/ratio.py' 2026-03-13T13:43:21,879 adding 'goatools/semantic.py' 2026-03-13T13:43:21,880 adding 'goatools/statsdescribe.py' 2026-03-13T13:43:21,881 adding 'goatools/utils.py' 2026-03-13T13:43:21,882 adding 'goatools/version.py' 2026-03-13T13:43:21,884 adding 'goatools/wr_tbl.py' 2026-03-13T13:43:21,886 adding 'goatools/wr_tbl_class.py' 2026-03-13T13:43:21,888 adding 'goatools/anno/__init__.py' 2026-03-13T13:43:21,890 adding 'goatools/anno/annoreader_base.py' 2026-03-13T13:43:21,893 adding 'goatools/anno/broad_gos.py' 2026-03-13T13:43:21,894 adding 'goatools/anno/dnld_ebi_goa.py' 2026-03-13T13:43:21,897 adding 'goatools/anno/eco2group.py' 2026-03-13T13:43:21,898 adding 'goatools/anno/factory.py' 2026-03-13T13:43:21,900 adding 'goatools/anno/gaf_reader.py' 2026-03-13T13:43:21,901 adding 'goatools/anno/genetogo_reader.py' 2026-03-13T13:43:21,903 adding 'goatools/anno/gpad_reader.py' 2026-03-13T13:43:21,904 adding 'goatools/anno/idtogos_reader.py' 2026-03-13T13:43:21,906 adding 'goatools/anno/opts.py' 2026-03-13T13:43:21,907 adding 'goatools/anno/update_association.py' 2026-03-13T13:43:21,909 adding 'goatools/anno/extensions/__init__.py' 2026-03-13T13:43:21,910 adding 'goatools/anno/extensions/extension.py' 2026-03-13T13:43:21,911 adding 'goatools/anno/extensions/extensions.py' 2026-03-13T13:43:21,913 adding 'goatools/anno/extensions/factory.py' 2026-03-13T13:43:21,914 adding 'goatools/anno/init/__init__.py' 2026-03-13T13:43:21,917 adding 'goatools/anno/init/reader_gaf.py' 2026-03-13T13:43:21,919 adding 'goatools/anno/init/reader_genetogo.py' 2026-03-13T13:43:21,921 adding 'goatools/anno/init/reader_gpad.py' 2026-03-13T13:43:21,923 adding 'goatools/anno/init/reader_idtogos.py' 2026-03-13T13:43:21,924 adding 'goatools/anno/init/utils.py' 2026-03-13T13:43:21,926 adding 'goatools/cli/__init__.py' 2026-03-13T13:43:21,928 adding 'goatools/cli/compare_gos.py' 2026-03-13T13:43:21,929 adding 'goatools/cli/docopt_parse.py' 2026-03-13T13:43:21,931 adding 'goatools/cli/fetch_associations.py' 2026-03-13T13:43:21,934 adding 'goatools/cli/find_enrichment.py' 2026-03-13T13:43:21,936 adding 'goatools/cli/gos_get.py' 2026-03-13T13:43:21,939 adding 'goatools/cli/gosubdag_plot.py' 2026-03-13T13:43:21,940 adding 'goatools/cli/grouped.py' 2026-03-13T13:43:21,942 adding 'goatools/cli/main.py' 2026-03-13T13:43:21,943 adding 'goatools/cli/map_to_slim.py' 2026-03-13T13:43:21,945 adding 'goatools/cli/ncbi_gene_results_to_python.py' 2026-03-13T13:43:21,946 adding 'goatools/cli/plot_go_term.py' 2026-03-13T13:43:21,948 adding 'goatools/cli/prt_terms.py' 2026-03-13T13:43:21,949 adding 'goatools/cli/wr_hierarchy.py' 2026-03-13T13:43:21,951 adding 'goatools/cli/wr_sections.py' 2026-03-13T13:43:21,953 adding 'goatools/godag/__init__.py' 2026-03-13T13:43:21,954 adding 'goatools/godag/consts.py' 2026-03-13T13:43:21,956 adding 'goatools/godag/go_tasks.py' 2026-03-13T13:43:21,957 adding 'goatools/godag/obo_optional_attributes.py' 2026-03-13T13:43:21,959 adding 'goatools/godag/prtfncs.py' 2026-03-13T13:43:21,960 adding 'goatools/godag/prttime.py' 2026-03-13T13:43:21,961 adding 'goatools/godag/relationship_combos.py' 2026-03-13T13:43:21,963 adding 'goatools/godag/relationship_str.py' 2026-03-13T13:43:21,964 adding 'goatools/godag/reldepth.py' 2026-03-13T13:43:21,965 adding 'goatools/godag/typedef.py' 2026-03-13T13:43:21,967 adding 'goatools/goea/__init__.py' 2026-03-13T13:43:21,968 adding 'goatools/goea/go_enrichment_ns.py' 2026-03-13T13:43:21,970 adding 'goatools/gosubdag/__init__.py' 2026-03-13T13:43:21,972 adding 'goatools/gosubdag/go_edges.py' 2026-03-13T13:43:21,973 adding 'goatools/gosubdag/go_most_specific.py' 2026-03-13T13:43:21,974 adding 'goatools/gosubdag/go_paths.py' 2026-03-13T13:43:21,976 adding 'goatools/gosubdag/go_tasks.py' 2026-03-13T13:43:21,978 adding 'goatools/gosubdag/godag_rcnt.py' 2026-03-13T13:43:21,979 adding 'goatools/gosubdag/godag_rcnt_init.py' 2026-03-13T13:43:21,981 adding 'goatools/gosubdag/gosubdag.py' 2026-03-13T13:43:21,983 adding 'goatools/gosubdag/gosubdag_init.py' 2026-03-13T13:43:21,984 adding 'goatools/gosubdag/utils.py' 2026-03-13T13:43:21,986 adding 'goatools/gosubdag/plot/__init__.py' 2026-03-13T13:43:21,987 adding 'goatools/gosubdag/plot/go2color.py' 2026-03-13T13:43:21,988 adding 'goatools/gosubdag/plot/go_edge.py' 2026-03-13T13:43:21,990 adding 'goatools/gosubdag/plot/go_name_shorten.py' 2026-03-13T13:43:21,991 adding 'goatools/gosubdag/plot/go_node.py' 2026-03-13T13:43:21,993 adding 'goatools/gosubdag/plot/goea_results.py' 2026-03-13T13:43:21,995 adding 'goatools/gosubdag/plot/gosubdag_plot.py' 2026-03-13T13:43:21,996 adding 'goatools/gosubdag/plot/plot.py' 2026-03-13T13:43:21,998 adding 'goatools/gosubdag/rpt/__init__.py' 2026-03-13T13:43:22,000 adding 'goatools/gosubdag/rpt/wr_xlsx.py' 2026-03-13T13:43:22,002 adding 'goatools/gosubdag/rpt/write_hierarchy.py' 2026-03-13T13:43:22,003 adding 'goatools/grouper/__init__.py' 2026-03-13T13:43:22,005 adding 'goatools/grouper/aart_geneproducts_all.py' 2026-03-13T13:43:22,007 adding 'goatools/grouper/aart_geneproducts_one.py' 2026-03-13T13:43:22,008 adding 'goatools/grouper/colors.py' 2026-03-13T13:43:22,010 adding 'goatools/grouper/grprdflts.py' 2026-03-13T13:43:22,012 adding 'goatools/grouper/grprobj.py' 2026-03-13T13:43:22,014 adding 'goatools/grouper/grprobj_init.py' 2026-03-13T13:43:22,016 adding 'goatools/grouper/grprplt.py' 2026-03-13T13:43:22,017 adding 'goatools/grouper/hdrgos.py' 2026-03-13T13:43:22,019 adding 'goatools/grouper/plotobj.py' 2026-03-13T13:43:22,021 adding 'goatools/grouper/read_goids.py' 2026-03-13T13:43:22,023 adding 'goatools/grouper/sorter.py' 2026-03-13T13:43:22,024 adding 'goatools/grouper/sorter_gos.py' 2026-03-13T13:43:22,026 adding 'goatools/grouper/sorter_nts.py' 2026-03-13T13:43:22,027 adding 'goatools/grouper/tasks.py' 2026-03-13T13:43:22,028 adding 'goatools/grouper/utils.py' 2026-03-13T13:43:22,030 adding 'goatools/grouper/wr_sections.py' 2026-03-13T13:43:22,032 adding 'goatools/grouper/wrxlsx.py' 2026-03-13T13:43:22,034 adding 'goatools/parsers/__init__.py' 2026-03-13T13:43:22,036 adding 'goatools/parsers/david_chart.py' 2026-03-13T13:43:22,038 adding 'goatools/parsers/ncbi_gene_file_reader.py' 2026-03-13T13:43:22,039 adding 'goatools/rpt/__init__.py' 2026-03-13T13:43:22,041 adding 'goatools/rpt/goea_nt_xfrm.py' 2026-03-13T13:43:22,043 adding 'goatools/rpt/nts_xfrm.py' 2026-03-13T13:43:22,044 adding 'goatools/rpt/prtfmt.py' 2026-03-13T13:43:22,046 adding 'goatools/rpt/rpt_lev_depth.py' 2026-03-13T13:43:22,048 adding 'goatools/rpt/write_hierarchy_base.py' 2026-03-13T13:43:22,049 adding 'goatools/semsim/__init__.py' 2026-03-13T13:43:22,051 adding 'goatools/semsim/termwise/__init__.py' 2026-03-13T13:43:22,052 adding 'goatools/semsim/termwise/dag_a.py' 2026-03-13T13:43:22,054 adding 'goatools/semsim/termwise/wang.py' 2026-03-13T13:43:22,055 adding 'goatools/test_data/__init__.py' 2026-03-13T13:43:22,057 adding 'goatools/test_data/checks.py' 2026-03-13T13:43:22,058 adding 'goatools/test_data/gafs.py' 2026-03-13T13:43:22,945 adding 'goatools/test_data/genes_NCBI_10090_All.py' 2026-03-13T13:43:23,911 adding 'goatools/test_data/genes_NCBI_10090_ProteinCoding.py' 2026-03-13T13:43:24,568 adding 'goatools/test_data/genes_NCBI_7227_ProteinCoding.py' 2026-03-13T13:43:26,369 adding 'goatools/test_data/genes_NCBI_9606_All.py' 2026-03-13T13:43:27,398 adding 'goatools/test_data/genes_NCBI_9606_ProteinCoding.py' 2026-03-13T13:43:27,521 adding 'goatools/test_data/gjoneska_2015_ensmusg2symbol.py' 2026-03-13T13:43:27,892 adding 'goatools/test_data/gjoneska_goea_consistent_decrease.py' 2026-03-13T13:43:28,289 adding 'goatools/test_data/gjoneska_goea_consistent_increase.py' 2026-03-13T13:43:28,849 adding 'goatools/test_data/gjoneska_goea_late_decrease.py' 2026-03-13T13:43:29,331 adding 'goatools/test_data/gjoneska_goea_late_increase.py' 2026-03-13T13:43:29,592 adding 'goatools/test_data/gjoneska_goea_transient_decrease.py' 2026-03-13T13:43:29,916 adding 'goatools/test_data/gjoneska_goea_transient_increase.py' 2026-03-13T13:43:29,948 adding 'goatools/test_data/godag_timed.py' 2026-03-13T13:43:29,950 adding 'goatools/test_data/nature3102_goea.py' 2026-03-13T13:43:29,952 adding 'goatools/test_data/sorter.py' 2026-03-13T13:43:29,953 adding 'goatools/test_data/wr_subobo.py' 2026-03-13T13:43:29,956 adding 'goatools/test_data/cli/__init__.py' 2026-03-13T13:43:29,957 adding 'goatools/test_data/cli/find_enrichment_dflts.py' 2026-03-13T13:43:29,959 adding 'goatools/test_data/nbt_3102/README.md' 2026-03-13T13:43:29,960 adding 'goatools/test_data/nbt_3102/__init__.py' 2026-03-13T13:43:29,965 adding 'goatools/test_data/nbt_3102/nbt.3102-S4.xlsx' 2026-03-13T13:43:29,968 adding 'goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx' 2026-03-13T13:43:29,972 adding 'goatools/test_data/nbt_3102/nbt.3102-S6.xlsx' 2026-03-13T13:43:29,974 adding 'goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt' 2026-03-13T13:43:29,976 adding 'goatools/test_data/nbt_3102/symbol2geneid.py' 2026-03-13T13:43:29,978 adding 'goatools/test_data/sections/__init__.py' 2026-03-13T13:43:29,980 adding 'goatools/test_data/sections/data2018_07_find_enrichment.py' 2026-03-13T13:43:29,983 adding 'goatools/test_data/sections/dvk2018_genefamilyclusters.py' 2026-03-13T13:43:29,985 adding 'goatools/test_data/sections/gjoneska_pfenning.py' 2026-03-13T13:43:29,988 adding 'goatools-1.6.3.dist-info/licenses/LICENSE' 2026-03-13T13:43:29,990 adding 'goatools-1.6.3.dist-info/METADATA' 2026-03-13T13:43:29,991 adding 'goatools-1.6.3.dist-info/WHEEL' 2026-03-13T13:43:29,992 adding 'goatools-1.6.3.dist-info/entry_points.txt' 2026-03-13T13:43:29,993 adding 'goatools-1.6.3.dist-info/top_level.txt' 2026-03-13T13:43:29,996 adding 'goatools-1.6.3.dist-info/RECORD' 2026-03-13T13:43:30,217 removing build/bdist.linux-armv7l/wheel 2026-03-13T13:43:30,414 Building wheel for goatools (pyproject.toml): finished with status 'done' 2026-03-13T13:43:30,756 Created wheel for goatools: filename=goatools-1.6.3-py3-none-any.whl size=15768616 sha256=2edccb9eb92f76dbd93f72da388e58050cc1bb682f4653611816861e5f1e4d6c 2026-03-13T13:43:30,757 Stored in directory: /tmp/pip-ephem-wheel-cache-uynsi0t8/wheels/54/33/e9/3d660781075c2d61515f548e514c34419aed3a89c7cbe9baf2 2026-03-13T13:43:30,781 Successfully built goatools 2026-03-13T13:43:31,157 Removed build tracker: '/tmp/pip-build-tracker-mcve0xsy'