2026-03-13T14:56:34,006 Created temporary directory: /tmp/pip-ephem-wheel-cache-e6j3x1t0 2026-03-13T14:56:34,008 Created temporary directory: /tmp/pip-build-tracker-wlseufzt 2026-03-13T14:56:34,009 Initialized build tracking at /tmp/pip-build-tracker-wlseufzt 2026-03-13T14:56:34,009 Created build tracker: /tmp/pip-build-tracker-wlseufzt 2026-03-13T14:56:34,010 Entered build tracker: /tmp/pip-build-tracker-wlseufzt 2026-03-13T14:56:34,011 Created temporary directory: /tmp/pip-wheel-tenego_g 2026-03-13T14:56:34,013 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T14:56:34,016 Created temporary directory: /tmp/pip-ephem-wheel-cache-6updmhf8 2026-03-13T14:56:34,038 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T14:56:34,041 2 location(s) to search for versions of hivclustering: 2026-03-13T14:56:34,041 * https://pypi.org/simple/hivclustering/ 2026-03-13T14:56:34,041 * https://www.piwheels.org/simple/hivclustering/ 2026-03-13T14:56:34,042 Fetching project page and analyzing links: https://pypi.org/simple/hivclustering/ 2026-03-13T14:56:34,043 Getting page https://pypi.org/simple/hivclustering/ 2026-03-13T14:56:34,044 Found index url https://pypi.org/simple 2026-03-13T14:56:34,259 Fetched page https://pypi.org/simple/hivclustering/ as application/vnd.pypi.simple.v1+json 2026-03-13T14:56:34,267 Found link 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https://files.pythonhosted.org/packages/b8/f3/4eb8073b7f1343311edb38046396c39debb8553bbbcabf3866cfe9057c4e/hivclustering-1.3.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.0 2026-03-13T14:56:34,270 Found link https://files.pythonhosted.org/packages/48/82/f9031dd1c00db81a9165533a52508e28190a9a48b88103f7d61b18f3ed6d/hivclustering-1.3.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.1 2026-03-13T14:56:34,271 Found link https://files.pythonhosted.org/packages/eb/5c/56e25f045d57d87737de12af90eb9d31d6e0ddb490c614fcf719a5a51de8/hivclustering-1.3.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.3.2 2026-03-13T14:56:34,271 Found link https://files.pythonhosted.org/packages/ad/1b/ddc494adedcd724936919219d78d243f45a07afd806a91f64e6b6b83a411/hivclustering-1.4.1.macosx-10.13-x86_64.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.4.1.macosx-10.13-x86_64 2026-03-13T14:56:34,272 Found link 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https://files.pythonhosted.org/packages/0a/42/d7d17d0f48093305713468653526872f20d447d91d95dde19539a5c98f4b/hivclustering-1.6.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.1 2026-03-13T14:56:34,278 Found link https://files.pythonhosted.org/packages/06/27/ddc42bc60270c1b726a9dcd1971665ac257ca423cd83032cc4157000aaba/hivclustering-1.6.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.2 2026-03-13T14:56:34,278 Found link https://files.pythonhosted.org/packages/8c/27/1c8b29923936dda2893e2c060062bd99c11c01806a769fce6213d12d6587/hivclustering-1.6.3.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.3 2026-03-13T14:56:34,279 Found link https://files.pythonhosted.org/packages/f4/87/b69a4f8b1b5495cdd411fbf6b26719c614bf9df2769dc879d8ebc629c9b4/hivclustering-1.6.4.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.4 2026-03-13T14:56:34,279 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/34/8c/0de865c0c8fb2ecd1d89ede3f3f83f85d197e271b7dcdcaa3516c881c965/hivclustering-1.6.5-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2026-03-13T14:56:34,280 Found link https://files.pythonhosted.org/packages/4c/b4/7a699eca4918e73b2eb14ad3ff99c7e609ee88601b060a2fee4c96417673/hivclustering-1.6.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.5 2026-03-13T14:56:34,281 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/21/33/849c3fe3744ba1f195434e32297893568d1312c0464b8912491d356ef22e/hivclustering-1.6.6-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2026-03-13T14:56:34,281 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/2c/13/c6b43cda5d3950b48e82274cf39455132c64cfe88e23ca9b348bcfc0b845/hivclustering-1.6.7-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) 2026-03-13T14:56:34,282 Found link https://files.pythonhosted.org/packages/98/28/f855f0803a8fe6f4f0916b158f57e50bc63a38576b73958c56af95128c8f/hivclustering-1.6.7.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.7 2026-03-13T14:56:34,283 Found link https://files.pythonhosted.org/packages/ab/92/e6ec5e7e907d6857dfbe0f1e6e9a0676c9c8a9f55eac2afe35e0353797c2/hivclustering-1.6.8.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.6.8 2026-03-13T14:56:34,283 Found link https://files.pythonhosted.org/packages/ee/cf/c13c2c1e4141935145b94d33f8f2bdf96677009643401bce9a5fba88c0cf/hivclustering-1.7.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.7.0 2026-03-13T14:56:34,284 Found link https://files.pythonhosted.org/packages/42/d3/854326ba5c558c960a0860244ce59f5259c7ed67d24bc7d50edaec6f941b/hivclustering-1.8.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.8.0 2026-03-13T14:56:34,284 Found link https://files.pythonhosted.org/packages/be/35/32075a85a11abb3e46b5c68e8a812ed47c70be777283c2546e01a0ca8595/hivclustering-1.9.0.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.0 2026-03-13T14:56:34,285 Found link https://files.pythonhosted.org/packages/20/82/fc09ec449cd701ebee5c617d40251438bb8d729967345363367b68e693b4/hivclustering-1.9.1.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.1 2026-03-13T14:56:34,286 Found link https://files.pythonhosted.org/packages/19/c3/b000e6a09a102361863f2026e88ee54a5fdb477195614b3dce802a10b036/hivclustering-1.9.2.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.2 2026-03-13T14:56:34,286 Found link https://files.pythonhosted.org/packages/51/0d/53ce02283e351acf1cbae924eabb2ff0805a9b4193902ca085184afe386b/hivclustering-1.9.3.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.3 2026-03-13T14:56:34,287 Found link https://files.pythonhosted.org/packages/64/8f/252e8f27564399dc4784d397bcb26b56dae6fe834444aedbcd47cf4a1d89/hivclustering-1.9.4.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.4 2026-03-13T14:56:34,287 Found link https://files.pythonhosted.org/packages/9a/e8/14bd1c48fb4da153dbddf5bed68b7e0505454321946f32f9f56e5d62d8ee/hivclustering-1.9.5.tar.gz (from https://pypi.org/simple/hivclustering/), version: 1.9.5 2026-03-13T14:56:34,288 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/60/68/8c9ef6321ad2ab25ecb169dcb9f09e8890501df36c1ecaa48668e94f1a1f/hivclustering-1.9.6-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) (requires-python:>=3.10) 2026-03-13T14:56:34,289 Found link https://files.pythonhosted.org/packages/43/f7/698648e12c3627f37156dea924c7375de2be409776c6a70c640e44740fbc/hivclustering-1.9.6.tar.gz (from https://pypi.org/simple/hivclustering/) (requires-python:>=3.10), version: 1.9.6 2026-03-13T14:56:34,289 Skipping link: No binaries permitted for hivclustering: https://files.pythonhosted.org/packages/8c/cc/4d32c1b55d67ab4ed40fc6529d31be84703ce1f5e8b31484658edabac742/hivclustering-1.9.7-py3-none-any.whl (from https://pypi.org/simple/hivclustering/) (requires-python:>=3.10) 2026-03-13T14:56:34,290 Found link https://files.pythonhosted.org/packages/5a/4d/1796344c7bde2f5e066790ca644bc662fe000bb3bbf0228c2b83e853b886/hivclustering-1.9.7.tar.gz (from https://pypi.org/simple/hivclustering/) (requires-python:>=3.10), version: 1.9.7 2026-03-13T14:56:34,291 Fetching project page and analyzing links: https://www.piwheels.org/simple/hivclustering/ 2026-03-13T14:56:34,292 Getting page https://www.piwheels.org/simple/hivclustering/ 2026-03-13T14:56:34,293 Found index url https://www.piwheels.org/simple 2026-03-13T14:56:34,450 Fetched page https://www.piwheels.org/simple/hivclustering/ as text/html 2026-03-13T14:56:34,460 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.6-py3-none-any.whl#sha256=f3d7f48fe5110384d403871aac354d96ef2abc678d0e7dda88ce2a2c4c6e735b (from https://www.piwheels.org/simple/hivclustering/) (requires-python:>=3.10) 2026-03-13T14:56:34,460 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.5-py3-none-any.whl#sha256=7e9a258c1abba01b66933f0ed75fb024b9a89a68a4be2ff766ed82e071765447 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,461 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.4-py3-none-any.whl#sha256=3cc3383a5f10175a5ec6ac6711e6104c2cd9e75e66bf0cc1f39c8645d4bf1df5 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,461 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.3-py3-none-any.whl#sha256=9edca8247a082a6484d79f6946384e3fe80c802f7ed11aee60c7502083a6c2a9 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,462 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.2-py3-none-any.whl#sha256=5adae730c221563e7e1ca1bd9f70792c3f9435f9d5619a954130a1b89fd25c9d (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,463 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.1-py3-none-any.whl#sha256=5c2dbfacbba0877c24e5675f056e8d7498657f6c025554b6085430b51a316223 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,463 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.9.0-py3-none-any.whl#sha256=8cbee8fb5d8675d06130c06f6c3166fc9ba9f6007c330a175f477b1ae883b2e2 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,464 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.8.0-py3-none-any.whl#sha256=5bffaf171ccc8be663921b23a6e3292e606a1a3e71df029dbf729c44647e541e (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,464 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.7.0-py3-none-any.whl#sha256=a15f9d3931ed1f2651c731272966a8c6595b0dafa48a7dff87c552d28ee08e0d (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,465 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.6.8-py3-none-any.whl#sha256=00ad2bf3d292c74fc455a3b016cc9df40ad9710a0650b675effff0707c1d93b0 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,465 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.6.7-py3-none-any.whl#sha256=ded16d49659139342564ed043b2b299fd55c4386a8f11fb8912a85390d85fa85 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,466 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.6.5-py3-none-any.whl#sha256=8fa4652c8de8e4b7effbf348b4eaad871e370417ae9478b82781cace3e9abfb2 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,467 Skipping link: No binaries permitted for hivclustering: 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https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.5.5-py3-none-any.whl#sha256=ced37907eadfaa871ecef6943a560aee9a4bc36c60e912baa2f773a5d9785edd (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,471 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.5.4-py3-none-any.whl#sha256=c7a1e84f99736e78084bb1bd2ab7f41f165a488b609c30b1680ecaabb792f44d (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,472 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.5.3-py3-none-any.whl#sha256=2c4a710ca8657026ddade8b8015ea20b40a4034cd93a122cbbee64a1bd008de7 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,472 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.5.2-py3-none-any.whl#sha256=65fb67456a78b323c09fb3cf309a33df8ebf950de0d81439e359d167a745ad4d (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,473 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.5.1-py3-none-any.whl#sha256=39254435aa0fd64e726736d72d668057d4ad98aea271a8eaa2ea4f31479cbea4 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,473 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.4.2-py3-none-any.whl#sha256=d0e93678e49b411f0c6a5f83b7c5940c96cc23bfbecb2ff6a740073ec3be119f (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,474 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.3.2-py3-none-any.whl#sha256=ecd6ea13b75a731c5f495b40207e82838399a0afb7f2ed27c996cf93af33046b (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,474 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.3.1-py3-none-any.whl#sha256=e9371b4ef989909b421bcb44cdb742d7dec4ecd43a42a71b4115fd7deb998b2b (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,475 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.3.0-py3-none-any.whl#sha256=6ac03462485ef47846f56e9f56ee93b7bc21be43ffe327f0257dfcae39d020f0 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,476 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.2.8-py3-none-any.whl#sha256=6f94a93b31ce7f22bcbc02c3325e5d444d6ed1c04d5464d47ffaacc5d5c132fe (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,476 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.2.7-py3-none-any.whl#sha256=1b3a079fe5e93027c8ec35db7fe829c6f09e5e497a25f0ce4db1fed955170ffa (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,477 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.2.6-py3-none-any.whl#sha256=e987e29496d8b0c8d742860ed5b5c9cd2d1f42db6de3734252a27d62e95614f8 (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,477 Skipping link: No binaries permitted for hivclustering: https://archive1.piwheels.org/simple/hivclustering/hivclustering-1.2.5-py3-none-any.whl#sha256=f1deb7709118e452442b1a1214e07059f270c1031e93150a3a4f9b92895bb09e (from https://www.piwheels.org/simple/hivclustering/) 2026-03-13T14:56:34,478 Skipping link: not a file: https://www.piwheels.org/simple/hivclustering/ 2026-03-13T14:56:34,479 Skipping link: not a file: https://pypi.org/simple/hivclustering/ 2026-03-13T14:56:34,504 Given no hashes to check 1 links for project 'hivclustering': discarding no candidates 2026-03-13T14:56:34,523 Collecting hivclustering==1.9.7 2026-03-13T14:56:34,525 Created temporary directory: /tmp/pip-unpack-lnvh7glu 2026-03-13T14:56:34,678 Downloading hivclustering-1.9.7.tar.gz (64 kB) 2026-03-13T14:56:34,791 Added hivclustering==1.9.7 from https://files.pythonhosted.org/packages/5a/4d/1796344c7bde2f5e066790ca644bc662fe000bb3bbf0228c2b83e853b886/hivclustering-1.9.7.tar.gz to build tracker '/tmp/pip-build-tracker-wlseufzt' 2026-03-13T14:56:34,792 Running setup.py (path:/tmp/pip-wheel-tenego_g/hivclustering_3576a23ebd044861914a0f76b1cc2073/setup.py) egg_info for package hivclustering 2026-03-13T14:56:34,793 Created temporary directory: /tmp/pip-pip-egg-info-ca87iedn 2026-03-13T14:56:34,793 Preparing metadata (setup.py): started 2026-03-13T14:56:34,795 Running command python setup.py egg_info 2026-03-13T14:56:35,660 running egg_info 2026-03-13T14:56:35,687 creating /tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info 2026-03-13T14:56:35,688 writing /tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/PKG-INFO 2026-03-13T14:56:35,692 writing dependency_links to /tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/dependency_links.txt 2026-03-13T14:56:35,694 writing requirements to /tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/requires.txt 2026-03-13T14:56:35,695 writing top-level names to /tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/top_level.txt 2026-03-13T14:56:35,697 writing manifest file '/tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/SOURCES.txt' 2026-03-13T14:56:35,815 reading manifest file '/tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/SOURCES.txt' 2026-03-13T14:56:35,819 writing manifest file '/tmp/pip-pip-egg-info-ca87iedn/hivclustering.egg-info/SOURCES.txt' 2026-03-13T14:56:35,927 Preparing metadata (setup.py): finished with status 'done' 2026-03-13T14:56:35,931 Source in /tmp/pip-wheel-tenego_g/hivclustering_3576a23ebd044861914a0f76b1cc2073 has version 1.9.7, which satisfies requirement hivclustering==1.9.7 from https://files.pythonhosted.org/packages/5a/4d/1796344c7bde2f5e066790ca644bc662fe000bb3bbf0228c2b83e853b886/hivclustering-1.9.7.tar.gz 2026-03-13T14:56:35,932 Removed hivclustering==1.9.7 from https://files.pythonhosted.org/packages/5a/4d/1796344c7bde2f5e066790ca644bc662fe000bb3bbf0228c2b83e853b886/hivclustering-1.9.7.tar.gz from build tracker '/tmp/pip-build-tracker-wlseufzt' 2026-03-13T14:56:35,937 Created temporary directory: /tmp/pip-unpack-d6vww_xn 2026-03-13T14:56:35,938 Building wheels for collected packages: hivclustering 2026-03-13T14:56:35,943 Created temporary directory: /tmp/pip-wheel-jn64_qxy 2026-03-13T14:56:35,943 Building wheel for hivclustering (setup.py): started 2026-03-13T14:56:35,944 Destination directory: /tmp/pip-wheel-jn64_qxy 2026-03-13T14:56:35,945 Running command python setup.py bdist_wheel 2026-03-13T14:56:36,776 running bdist_wheel 2026-03-13T14:56:36,906 running build 2026-03-13T14:56:36,907 running build_py 2026-03-13T14:56:36,939 creating build/lib/hivclustering 2026-03-13T14:56:36,941 copying hivclustering/__init__.py -> build/lib/hivclustering 2026-03-13T14:56:36,943 copying hivclustering/networkbuild.py -> build/lib/hivclustering 2026-03-13T14:56:36,947 copying hivclustering/mtnetwork.py -> build/lib/hivclustering 2026-03-13T14:56:36,953 creating build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,955 copying hivclustering/data/HBL/DegreeDistributions.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,958 copying hivclustering/data/HBL/SimulateSequence.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,961 copying hivclustering/data/HBL/ExtractSequences.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,963 copying hivclustering/data/HBL/CycleSupport.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,966 copying hivclustering/data/HBL/ExtractACluster.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,968 copying hivclustering/data/HBL/TriangleSupport.bf -> build/lib/hivclustering/data/HBL 2026-03-13T14:56:36,970 running build_scripts 2026-03-13T14:56:36,971 creating build/scripts-3.11 2026-03-13T14:56:36,972 copying and adjusting scripts/hivnetworkcsv -> build/scripts-3.11 2026-03-13T14:56:36,976 copying and adjusting scripts/TNS -> build/scripts-3.11 2026-03-13T14:56:36,979 copying and adjusting scripts/hivnetworkannotate -> build/scripts-3.11 2026-03-13T14:56:36,980 changing mode of build/scripts-3.11/hivnetworkcsv from 644 to 755 2026-03-13T14:56:36,981 changing mode of build/scripts-3.11/TNS from 644 to 755 2026-03-13T14:56:36,981 changing mode of build/scripts-3.11/hivnetworkannotate from 644 to 755 2026-03-13T14:56:37,008 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-13T14:56:37,009 !! 2026-03-13T14:56:37,010 ******************************************************************************** 2026-03-13T14:56:37,010 Please avoid running ``setup.py`` directly. 2026-03-13T14:56:37,011 Instead, use pypa/build, pypa/installer or other 2026-03-13T14:56:37,011 standards-based tools. 2026-03-13T14:56:37,012 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T14:56:37,012 calls to avoid build errors in the future. 2026-03-13T14:56:37,013 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-13T14:56:37,014 ******************************************************************************** 2026-03-13T14:56:37,015 !! 2026-03-13T14:56:37,016 self.initialize_options() 2026-03-13T14:56:37,037 installing to build/bdist.linux-armv7l/wheel 2026-03-13T14:56:37,038 running install 2026-03-13T14:56:37,061 running install_lib 2026-03-13T14:56:37,088 creating build/bdist.linux-armv7l/wheel 2026-03-13T14:56:37,090 creating build/bdist.linux-armv7l/wheel/hivclustering 2026-03-13T14:56:37,091 copying build/lib/hivclustering/__init__.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2026-03-13T14:56:37,093 copying build/lib/hivclustering/networkbuild.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2026-03-13T14:56:37,096 copying build/lib/hivclustering/mtnetwork.py -> build/bdist.linux-armv7l/wheel/./hivclustering 2026-03-13T14:56:37,101 creating build/bdist.linux-armv7l/wheel/hivclustering/data 2026-03-13T14:56:37,103 creating build/bdist.linux-armv7l/wheel/hivclustering/data/HBL 2026-03-13T14:56:37,104 copying build/lib/hivclustering/data/HBL/DegreeDistributions.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,107 copying build/lib/hivclustering/data/HBL/SimulateSequence.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,109 copying build/lib/hivclustering/data/HBL/ExtractSequences.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,111 copying build/lib/hivclustering/data/HBL/CycleSupport.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,113 copying build/lib/hivclustering/data/HBL/ExtractACluster.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,115 copying build/lib/hivclustering/data/HBL/TriangleSupport.bf -> build/bdist.linux-armv7l/wheel/./hivclustering/data/HBL 2026-03-13T14:56:37,117 running install_egg_info 2026-03-13T14:56:37,151 running egg_info 2026-03-13T14:56:37,177 writing hivclustering.egg-info/PKG-INFO 2026-03-13T14:56:37,181 writing dependency_links to hivclustering.egg-info/dependency_links.txt 2026-03-13T14:56:37,184 writing requirements to hivclustering.egg-info/requires.txt 2026-03-13T14:56:37,185 writing top-level names to hivclustering.egg-info/top_level.txt 2026-03-13T14:56:37,215 reading manifest file 'hivclustering.egg-info/SOURCES.txt' 2026-03-13T14:56:37,221 writing manifest file 'hivclustering.egg-info/SOURCES.txt' 2026-03-13T14:56:37,222 Copying hivclustering.egg-info to build/bdist.linux-armv7l/wheel/./hivclustering-1.9.7-py3.11.egg-info 2026-03-13T14:56:37,231 running install_scripts 2026-03-13T14:56:37,232 creating build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts 2026-03-13T14:56:37,234 copying build/scripts-3.11/TNS -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts 2026-03-13T14:56:37,236 copying build/scripts-3.11/hivnetworkannotate -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts 2026-03-13T14:56:37,239 copying build/scripts-3.11/hivnetworkcsv -> build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts 2026-03-13T14:56:37,241 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts/TNS to 755 2026-03-13T14:56:37,242 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts/hivnetworkannotate to 755 2026-03-13T14:56:37,243 changing mode of build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.data/scripts/hivnetworkcsv to 755 2026-03-13T14:56:37,251 creating build/bdist.linux-armv7l/wheel/hivclustering-1.9.7.dist-info/WHEEL 2026-03-13T14:56:37,253 creating '/tmp/pip-wheel-jn64_qxy/hivclustering-1.9.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T14:56:37,256 adding 'hivclustering/__init__.py' 2026-03-13T14:56:37,268 adding 'hivclustering/mtnetwork.py' 2026-03-13T14:56:37,274 adding 'hivclustering/networkbuild.py' 2026-03-13T14:56:37,277 adding 'hivclustering/data/HBL/CycleSupport.bf' 2026-03-13T14:56:37,279 adding 'hivclustering/data/HBL/DegreeDistributions.bf' 2026-03-13T14:56:37,281 adding 'hivclustering/data/HBL/ExtractACluster.bf' 2026-03-13T14:56:37,282 adding 'hivclustering/data/HBL/ExtractSequences.bf' 2026-03-13T14:56:37,284 adding 'hivclustering/data/HBL/SimulateSequence.bf' 2026-03-13T14:56:37,286 adding 'hivclustering/data/HBL/TriangleSupport.bf' 2026-03-13T14:56:37,290 adding 'hivclustering-1.9.7.data/scripts/TNS' 2026-03-13T14:56:37,292 adding 'hivclustering-1.9.7.data/scripts/hivnetworkannotate' 2026-03-13T14:56:37,295 adding 'hivclustering-1.9.7.data/scripts/hivnetworkcsv' 2026-03-13T14:56:37,298 adding 'hivclustering-1.9.7.dist-info/METADATA' 2026-03-13T14:56:37,298 adding 'hivclustering-1.9.7.dist-info/WHEEL' 2026-03-13T14:56:37,299 adding 'hivclustering-1.9.7.dist-info/top_level.txt' 2026-03-13T14:56:37,300 adding 'hivclustering-1.9.7.dist-info/RECORD' 2026-03-13T14:56:37,303 removing build/bdist.linux-armv7l/wheel 2026-03-13T14:56:37,418 Building wheel for hivclustering (setup.py): finished with status 'done' 2026-03-13T14:56:37,421 Created wheel for hivclustering: filename=hivclustering-1.9.7-py3-none-any.whl size=62168 sha256=b6735abda32f1fe71963c4d9a1f8cc9573c97bdfef85b5e92cf6a840f7fd3e3c 2026-03-13T14:56:37,422 Stored in directory: /tmp/pip-ephem-wheel-cache-6updmhf8/wheels/ac/21/4c/2e06e03edfc48e215b6f4fd5d702e0d570d3bb2617a0f912f1 2026-03-13T14:56:37,431 Successfully built hivclustering 2026-03-13T14:56:37,437 Removed build tracker: '/tmp/pip-build-tracker-wlseufzt'