2026-03-13T17:37:04,491 Created temporary directory: /tmp/pip-ephem-wheel-cache-2x69scq0 2026-03-13T17:37:04,493 Created temporary directory: /tmp/pip-build-tracker-g83j8v2d 2026-03-13T17:37:04,494 Initialized build tracking at /tmp/pip-build-tracker-g83j8v2d 2026-03-13T17:37:04,494 Created build tracker: /tmp/pip-build-tracker-g83j8v2d 2026-03-13T17:37:04,495 Entered build tracker: /tmp/pip-build-tracker-g83j8v2d 2026-03-13T17:37:04,496 Created temporary directory: /tmp/pip-wheel-6503ffv0 2026-03-13T17:37:04,499 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T17:37:04,501 Created temporary directory: /tmp/pip-ephem-wheel-cache-gjc3mvfq 2026-03-13T17:37:04,523 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T17:37:04,527 2 location(s) to search for versions of goatools: 2026-03-13T17:37:04,527 * https://pypi.org/simple/goatools/ 2026-03-13T17:37:04,527 * https://www.piwheels.org/simple/goatools/ 2026-03-13T17:37:04,528 Fetching project page and analyzing links: https://pypi.org/simple/goatools/ 2026-03-13T17:37:04,529 Getting page https://pypi.org/simple/goatools/ 2026-03-13T17:37:04,530 Found index url https://pypi.org/simple 2026-03-13T17:37:04,668 Fetched page https://pypi.org/simple/goatools/ as application/vnd.pypi.simple.v1+json 2026-03-13T17:37:04,680 Found link https://files.pythonhosted.org/packages/68/9f/aac469a604a671f2fb8af43abbc9a3baf9f4b89dc121a1069b022a01d33c/goatools-0.4.7.tar.gz (from 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as text/html 2026-03-13T17:37:04,892 Skipping link: No binaries permitted for goatools: https://www.piwheels.org/simple/goatools/goatools-1.6.3-py3-none-any.whl#sha256=2edccb9eb92f76dbd93f72da388e58050cc1bb682f4653611816861e5f1e4d6c (from https://www.piwheels.org/simple/goatools/) 2026-03-13T17:37:04,893 Skipping link: No binaries permitted for goatools: https://www.piwheels.org/simple/goatools/goatools-1.6.2-py3-none-any.whl#sha256=15004a009c9bde483062226d00f6691b43d4477b9a5f0aa482072375e52c94aa (from https://www.piwheels.org/simple/goatools/) 2026-03-13T17:37:04,893 Skipping link: No binaries permitted for goatools: https://www.piwheels.org/simple/goatools/goatools-1.6.1-py3-none-any.whl#sha256=a6c566967be18105a7cca2d2c7dcd8772ddab0092cf0cca406028adc2e9de339 (from https://www.piwheels.org/simple/goatools/) 2026-03-13T17:37:04,894 Skipping link: No binaries permitted for goatools: 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https://www.piwheels.org/simple/goatools/) 2026-03-13T17:37:04,914 Skipping link: No binaries permitted for goatools: https://archive1.piwheels.org/simple/goatools/goatools-0.4.7-py3-none-any.whl#sha256=5f6053c64d50dc189971e7197bed72056cb5d64f38bf95dd4b2bb2b65b06b116 (from https://www.piwheels.org/simple/goatools/) 2026-03-13T17:37:04,914 Skipping link: not a file: https://www.piwheels.org/simple/goatools/ 2026-03-13T17:37:04,915 Skipping link: not a file: https://pypi.org/simple/goatools/ 2026-03-13T17:37:04,940 Given no hashes to check 1 links for project 'goatools': discarding no candidates 2026-03-13T17:37:04,958 Collecting goatools==1.6.4 2026-03-13T17:37:04,961 Created temporary directory: /tmp/pip-unpack-6f_lrvrg 2026-03-13T17:37:05,178 Downloading goatools-1.6.4.tar.gz (17.8 MB) 2026-03-13T17:37:11,565 Added goatools==1.6.4 from https://files.pythonhosted.org/packages/d8/e7/1236af54327db37fd92d42e13138c2777875d18b394bd3083530328a7541/goatools-1.6.4.tar.gz to build tracker '/tmp/pip-build-tracker-g83j8v2d' 2026-03-13T17:37:11,572 Created temporary directory: /tmp/pip-build-env-ov1qbdqa 2026-03-13T17:37:11,577 Installing build dependencies: started 2026-03-13T17:37:11,578 Running command pip subprocess to install build dependencies 2026-03-13T17:37:12,959 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T17:37:13,513 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T17:37:13,535 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T17:37:15,267 Collecting setuptools 2026-03-13T17:37:15,348 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-13T17:37:15,727 Collecting setuptools_scm[toml] 2026-03-13T17:37:15,751 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-9.2.2-py3-none-any.whl (62 kB) 2026-03-13T17:37:15,905 Collecting setuptools_scm_git_archive 2026-03-13T17:37:15,978 Using cached https://www.piwheels.org/simple/setuptools-scm-git-archive/setuptools_scm_git_archive-1.4.1-py2.py3-none-any.whl (3.3 kB) 2026-03-13T17:37:16,203 Collecting wheel 2026-03-13T17:37:16,219 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T17:37:16,416 Collecting packaging>=20 2026-03-13T17:37:16,432 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T17:37:19,449 Installing collected packages: setuptools_scm_git_archive, setuptools, packaging, wheel, setuptools_scm 2026-03-13T17:37:23,211 Creating /tmp/pip-build-env-ov1qbdqa/overlay/local/bin 2026-03-13T17:37:23,214 changing mode of /tmp/pip-build-env-ov1qbdqa/overlay/local/bin/wheel to 755 2026-03-13T17:37:23,470 changing mode of /tmp/pip-build-env-ov1qbdqa/overlay/local/bin/setuptools-scm to 755 2026-03-13T17:37:23,505 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools_scm-9.2.2 setuptools_scm_git_archive-1.4.1 wheel-0.46.3 2026-03-13T17:37:23,792 Installing build dependencies: finished with status 'done' 2026-03-13T17:37:23,798 Getting requirements to build wheel: started 2026-03-13T17:37:23,799 Running command Getting requirements to build wheel 2026-03-13T17:37:24,367 /tmp/pip-build-env-ov1qbdqa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T17:37:24,367 !! 2026-03-13T17:37:24,368 ******************************************************************************** 2026-03-13T17:37:24,369 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T17:37:24,370 License :: OSI Approved :: BSD License 2026-03-13T17:37:24,371 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T17:37:24,372 ******************************************************************************** 2026-03-13T17:37:24,373 !! 2026-03-13T17:37:24,374 self._finalize_license_expression() 2026-03-13T17:37:24,533 running egg_info 2026-03-13T17:37:24,541 writing goatools.egg-info/PKG-INFO 2026-03-13T17:37:24,545 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T17:37:24,547 writing entry points to goatools.egg-info/entry_points.txt 2026-03-13T17:37:24,549 writing requirements to goatools.egg-info/requires.txt 2026-03-13T17:37:24,550 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T17:37:24,645 listing git files failed - pretending there aren't any 2026-03-13T17:37:24,650 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:24,665 reading manifest template 'MANIFEST.in' 2026-03-13T17:37:24,667 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T17:37:24,668 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T17:37:24,669 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T17:37:24,670 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T17:37:24,671 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T17:37:24,672 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T17:37:24,673 warning: no previously-included files found matching '.*' 2026-03-13T17:37:24,674 adding license file 'LICENSE' 2026-03-13T17:37:24,683 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:24,777 Getting requirements to build wheel: finished with status 'done' 2026-03-13T17:37:24,781 Created temporary directory: /tmp/pip-modern-metadata-dqkti96f 2026-03-13T17:37:24,784 Preparing metadata (pyproject.toml): started 2026-03-13T17:37:24,785 Running command Preparing metadata (pyproject.toml) 2026-03-13T17:37:25,432 /tmp/pip-build-env-ov1qbdqa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T17:37:25,432 !! 2026-03-13T17:37:25,433 ******************************************************************************** 2026-03-13T17:37:25,433 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T17:37:25,435 License :: OSI Approved :: BSD License 2026-03-13T17:37:25,436 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T17:37:25,436 ******************************************************************************** 2026-03-13T17:37:25,437 !! 2026-03-13T17:37:25,438 self._finalize_license_expression() 2026-03-13T17:37:25,463 running dist_info 2026-03-13T17:37:25,477 creating /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info 2026-03-13T17:37:25,478 writing /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/PKG-INFO 2026-03-13T17:37:25,482 writing dependency_links to /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/dependency_links.txt 2026-03-13T17:37:25,484 writing entry points to /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/entry_points.txt 2026-03-13T17:37:25,486 writing requirements to /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/requires.txt 2026-03-13T17:37:25,487 writing top-level names to /tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/top_level.txt 2026-03-13T17:37:25,488 writing manifest file '/tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:25,560 listing git files failed - pretending there aren't any 2026-03-13T17:37:25,564 reading manifest file '/tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:25,566 reading manifest template 'MANIFEST.in' 2026-03-13T17:37:25,568 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T17:37:25,568 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T17:37:25,569 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T17:37:25,570 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T17:37:25,570 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T17:37:25,571 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T17:37:25,572 warning: no previously-included files found matching '.*' 2026-03-13T17:37:25,572 adding license file 'LICENSE' 2026-03-13T17:37:25,579 writing manifest file '/tmp/pip-modern-metadata-dqkti96f/goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:25,580 creating '/tmp/pip-modern-metadata-dqkti96f/goatools-1.6.4.dist-info' 2026-03-13T17:37:25,714 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T17:37:25,720 Source in /tmp/pip-wheel-6503ffv0/goatools_24db66f0d5c944f096382e27fcdb0497 has version 1.6.4, which satisfies requirement goatools==1.6.4 from https://files.pythonhosted.org/packages/d8/e7/1236af54327db37fd92d42e13138c2777875d18b394bd3083530328a7541/goatools-1.6.4.tar.gz 2026-03-13T17:37:25,721 Removed goatools==1.6.4 from https://files.pythonhosted.org/packages/d8/e7/1236af54327db37fd92d42e13138c2777875d18b394bd3083530328a7541/goatools-1.6.4.tar.gz from build tracker '/tmp/pip-build-tracker-g83j8v2d' 2026-03-13T17:37:25,727 Created temporary directory: /tmp/pip-unpack-yficqehp 2026-03-13T17:37:25,727 Building wheels for collected packages: goatools 2026-03-13T17:37:25,731 Created temporary directory: /tmp/pip-wheel-t7jkblld 2026-03-13T17:37:25,732 Destination directory: /tmp/pip-wheel-t7jkblld 2026-03-13T17:37:25,734 Building wheel for goatools (pyproject.toml): started 2026-03-13T17:37:25,735 Running command Building wheel for goatools (pyproject.toml) 2026-03-13T17:37:26,383 /tmp/pip-build-env-ov1qbdqa/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-13T17:37:26,383 !! 2026-03-13T17:37:26,384 ******************************************************************************** 2026-03-13T17:37:26,384 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-13T17:37:26,385 License :: OSI Approved :: BSD License 2026-03-13T17:37:26,386 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-13T17:37:26,387 ******************************************************************************** 2026-03-13T17:37:26,388 !! 2026-03-13T17:37:26,388 self._finalize_license_expression() 2026-03-13T17:37:26,411 running bdist_wheel 2026-03-13T17:37:26,445 running build 2026-03-13T17:37:26,446 running build_py 2026-03-13T17:37:26,456 creating build/lib/goatools 2026-03-13T17:37:26,458 copying goatools/statsdescribe.py -> build/lib/goatools 2026-03-13T17:37:26,460 copying goatools/go_enrichment.py -> build/lib/goatools 2026-03-13T17:37:26,464 copying goatools/godag_obosm.py -> build/lib/goatools 2026-03-13T17:37:26,466 copying goatools/mapslim.py -> build/lib/goatools 2026-03-13T17:37:26,468 copying goatools/godag_small.py -> build/lib/goatools 2026-03-13T17:37:26,470 copying goatools/__main__.py -> build/lib/goatools 2026-03-13T17:37:26,472 copying goatools/wr_tbl_class.py -> build/lib/goatools 2026-03-13T17:37:26,474 copying goatools/nt_utils.py -> build/lib/goatools 2026-03-13T17:37:26,476 copying goatools/ratio.py -> build/lib/goatools 2026-03-13T17:37:26,478 copying goatools/utils.py -> build/lib/goatools 2026-03-13T17:37:26,480 copying goatools/randseed.py -> build/lib/goatools 2026-03-13T17:37:26,482 copying goatools/pvalcalc.py -> build/lib/goatools 2026-03-13T17:37:26,484 copying goatools/evidence_codes.py -> build/lib/goatools 2026-03-13T17:37:26,486 copying goatools/obo_parser.py -> build/lib/goatools 2026-03-13T17:37:26,489 copying goatools/associations.py -> build/lib/goatools 2026-03-13T17:37:26,491 copying goatools/wr_tbl.py -> build/lib/goatools 2026-03-13T17:37:26,493 copying goatools/godag_plot.py -> build/lib/goatools 2026-03-13T17:37:26,496 copying goatools/base.py -> build/lib/goatools 2026-03-13T17:37:26,499 copying goatools/multiple_testing.py -> build/lib/goatools 2026-03-13T17:37:26,719 copying goatools/version.py -> build/lib/goatools 2026-03-13T17:37:26,721 copying goatools/obo_tasks.py -> build/lib/goatools 2026-03-13T17:37:26,722 copying goatools/go_search.py -> build/lib/goatools 2026-03-13T17:37:26,725 copying goatools/__init__.py -> build/lib/goatools 2026-03-13T17:37:26,727 copying goatools/semantic.py -> build/lib/goatools 2026-03-13T17:37:26,731 creating build/lib/goatools/godag 2026-03-13T17:37:26,732 copying goatools/godag/relationship_combos.py -> build/lib/goatools/godag 2026-03-13T17:37:26,734 copying goatools/godag/prttime.py -> build/lib/goatools/godag 2026-03-13T17:37:26,736 copying goatools/godag/obo_optional_attributes.py -> build/lib/goatools/godag 2026-03-13T17:37:26,739 copying goatools/godag/go_tasks.py -> build/lib/goatools/godag 2026-03-13T17:37:26,742 copying goatools/godag/relationship_str.py -> build/lib/goatools/godag 2026-03-13T17:37:26,744 copying goatools/godag/consts.py -> build/lib/goatools/godag 2026-03-13T17:37:26,746 copying goatools/godag/reldepth.py -> build/lib/goatools/godag 2026-03-13T17:37:26,748 copying goatools/godag/prtfncs.py -> build/lib/goatools/godag 2026-03-13T17:37:26,750 copying goatools/godag/__init__.py -> build/lib/goatools/godag 2026-03-13T17:37:26,752 copying goatools/godag/typedef.py -> build/lib/goatools/godag 2026-03-13T17:37:26,754 creating build/lib/goatools/gosubdag 2026-03-13T17:37:26,756 copying goatools/gosubdag/go_paths.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,758 copying goatools/gosubdag/go_tasks.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,760 copying goatools/gosubdag/godag_rcnt_init.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,762 copying goatools/gosubdag/utils.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,763 copying goatools/gosubdag/godag_rcnt.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,765 copying goatools/gosubdag/gosubdag.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,768 copying goatools/gosubdag/go_edges.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,770 copying goatools/gosubdag/__init__.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,772 copying goatools/gosubdag/go_most_specific.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,774 copying goatools/gosubdag/gosubdag_init.py -> build/lib/goatools/gosubdag 2026-03-13T17:37:26,777 creating build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,778 copying goatools/gosubdag/plot/plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,780 copying goatools/gosubdag/plot/go2color.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,783 copying goatools/gosubdag/plot/go_node.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,785 copying goatools/gosubdag/plot/go_name_shorten.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,788 copying goatools/gosubdag/plot/go_edge.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,790 copying goatools/gosubdag/plot/goea_results.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,792 copying goatools/gosubdag/plot/__init__.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,794 copying goatools/gosubdag/plot/gosubdag_plot.py -> build/lib/goatools/gosubdag/plot 2026-03-13T17:37:26,797 creating build/lib/goatools/gosubdag/rpt 2026-03-13T17:37:26,798 copying goatools/gosubdag/rpt/write_hierarchy.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T17:37:26,800 copying goatools/gosubdag/rpt/wr_xlsx.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T17:37:26,803 copying goatools/gosubdag/rpt/__init__.py -> build/lib/goatools/gosubdag/rpt 2026-03-13T17:37:26,805 creating build/lib/goatools/test_data 2026-03-13T17:37:26,806 copying goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,181 copying goatools/test_data/gjoneska_goea_transient_increase.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,256 copying goatools/test_data/gjoneska_goea_transient_decrease.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,318 copying goatools/test_data/gjoneska_goea_late_decrease.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,418 copying goatools/test_data/nature3102_goea.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,420 copying goatools/test_data/checks.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,422 copying goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,432 copying goatools/test_data/wr_subobo.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,434 copying goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,527 copying goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,696 copying goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,859 copying goatools/test_data/gjoneska_goea_consistent_increase.py -> build/lib/goatools/test_data 2026-03-13T17:37:27,947 copying goatools/test_data/genes_NCBI_10090_All.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,122 copying goatools/test_data/genes_NCBI_9606_All.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,598 copying goatools/test_data/gafs.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,600 copying goatools/test_data/godag_timed.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,602 copying goatools/test_data/gjoneska_goea_late_increase.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,733 copying goatools/test_data/__init__.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,734 copying goatools/test_data/sorter.py -> build/lib/goatools/test_data 2026-03-13T17:37:28,738 creating build/lib/goatools/test_data/sections 2026-03-13T17:37:28,739 copying goatools/test_data/sections/gjoneska_pfenning.py -> build/lib/goatools/test_data/sections 2026-03-13T17:37:28,742 copying goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/lib/goatools/test_data/sections 2026-03-13T17:37:28,745 copying goatools/test_data/sections/data2018_07_find_enrichment.py -> build/lib/goatools/test_data/sections 2026-03-13T17:37:28,747 copying goatools/test_data/sections/__init__.py -> build/lib/goatools/test_data/sections 2026-03-13T17:37:28,750 creating build/lib/goatools/test_data/cli 2026-03-13T17:37:28,751 copying goatools/test_data/cli/find_enrichment_dflts.py -> build/lib/goatools/test_data/cli 2026-03-13T17:37:28,753 copying goatools/test_data/cli/__init__.py -> build/lib/goatools/test_data/cli 2026-03-13T17:37:28,756 creating build/lib/goatools/cli 2026-03-13T17:37:28,758 copying goatools/cli/plot_go_term.py -> build/lib/goatools/cli 2026-03-13T17:37:28,760 copying goatools/cli/find_enrichment.py -> build/lib/goatools/cli 2026-03-13T17:37:28,763 copying goatools/cli/prt_terms.py -> build/lib/goatools/cli 2026-03-13T17:37:28,766 copying goatools/cli/gos_get.py -> build/lib/goatools/cli 2026-03-13T17:37:28,768 copying goatools/cli/fetch_associations.py -> build/lib/goatools/cli 2026-03-13T17:37:28,771 copying goatools/cli/ncbi_gene_results_to_python.py -> build/lib/goatools/cli 2026-03-13T17:37:28,773 copying goatools/cli/map_to_slim.py -> build/lib/goatools/cli 2026-03-13T17:37:28,775 copying goatools/cli/compare_gos.py -> build/lib/goatools/cli 2026-03-13T17:37:28,778 copying goatools/cli/wr_sections.py -> build/lib/goatools/cli 2026-03-13T17:37:28,781 copying goatools/cli/wr_hierarchy.py -> build/lib/goatools/cli 2026-03-13T17:37:28,783 copying goatools/cli/docopt_parse.py -> build/lib/goatools/cli 2026-03-13T17:37:28,786 copying goatools/cli/main.py -> build/lib/goatools/cli 2026-03-13T17:37:28,789 copying goatools/cli/__init__.py -> build/lib/goatools/cli 2026-03-13T17:37:28,791 copying goatools/cli/grouped.py -> build/lib/goatools/cli 2026-03-13T17:37:28,793 copying goatools/cli/gosubdag_plot.py -> build/lib/goatools/cli 2026-03-13T17:37:28,797 creating build/lib/goatools/rpt 2026-03-13T17:37:28,798 copying goatools/rpt/nts_xfrm.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,800 copying goatools/rpt/goea_nt_xfrm.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,803 copying goatools/rpt/prtfmt.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,805 copying goatools/rpt/rpt_lev_depth.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,808 copying goatools/rpt/write_hierarchy_base.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,810 copying goatools/rpt/__init__.py -> build/lib/goatools/rpt 2026-03-13T17:37:28,813 creating build/lib/goatools/anno 2026-03-13T17:37:28,814 copying goatools/anno/gaf_reader.py -> build/lib/goatools/anno 2026-03-13T17:37:28,816 copying goatools/anno/update_association.py -> build/lib/goatools/anno 2026-03-13T17:37:28,819 copying goatools/anno/factory.py -> build/lib/goatools/anno 2026-03-13T17:37:28,821 copying goatools/anno/dnld_ebi_goa.py -> build/lib/goatools/anno 2026-03-13T17:37:28,823 copying goatools/anno/annoreader_base.py -> build/lib/goatools/anno 2026-03-13T17:37:28,826 copying goatools/anno/genetogo_reader.py -> build/lib/goatools/anno 2026-03-13T17:37:28,828 copying goatools/anno/opts.py -> build/lib/goatools/anno 2026-03-13T17:37:28,830 copying goatools/anno/gpad_reader.py -> build/lib/goatools/anno 2026-03-13T17:37:28,833 copying goatools/anno/eco2group.py -> build/lib/goatools/anno 2026-03-13T17:37:28,835 copying goatools/anno/broad_gos.py -> build/lib/goatools/anno 2026-03-13T17:37:28,838 copying goatools/anno/idtogos_reader.py -> build/lib/goatools/anno 2026-03-13T17:37:28,840 copying goatools/anno/__init__.py -> build/lib/goatools/anno 2026-03-13T17:37:28,843 creating build/lib/goatools/anno/init 2026-03-13T17:37:28,844 copying goatools/anno/init/utils.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,846 copying goatools/anno/init/reader_idtogos.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,848 copying goatools/anno/init/reader_gaf.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,851 copying goatools/anno/init/reader_genetogo.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,854 copying goatools/anno/init/reader_gpad.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,856 copying goatools/anno/init/__init__.py -> build/lib/goatools/anno/init 2026-03-13T17:37:28,859 creating build/lib/goatools/anno/extensions 2026-03-13T17:37:28,861 copying goatools/anno/extensions/extension.py -> build/lib/goatools/anno/extensions 2026-03-13T17:37:28,863 copying goatools/anno/extensions/factory.py -> build/lib/goatools/anno/extensions 2026-03-13T17:37:28,866 copying goatools/anno/extensions/extensions.py -> build/lib/goatools/anno/extensions 2026-03-13T17:37:28,868 copying goatools/anno/extensions/__init__.py -> build/lib/goatools/anno/extensions 2026-03-13T17:37:28,870 creating build/lib/goatools/goea 2026-03-13T17:37:28,872 copying goatools/goea/go_enrichment_ns.py -> build/lib/goatools/goea 2026-03-13T17:37:28,874 copying goatools/goea/__init__.py -> build/lib/goatools/goea 2026-03-13T17:37:28,877 creating build/lib/goatools/grouper 2026-03-13T17:37:28,878 copying goatools/grouper/read_goids.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,881 copying goatools/grouper/grprdflts.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,883 copying goatools/grouper/wrxlsx.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,886 copying goatools/grouper/aart_geneproducts_all.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,889 copying goatools/grouper/plotobj.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,891 copying goatools/grouper/sorter_gos.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,894 copying goatools/grouper/utils.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,896 copying goatools/grouper/grprobj_init.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,899 copying goatools/grouper/grprplt.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,902 copying goatools/grouper/hdrgos.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,904 copying goatools/grouper/aart_geneproducts_one.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,907 copying goatools/grouper/tasks.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,909 copying goatools/grouper/sorter_nts.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,912 copying goatools/grouper/wr_sections.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,914 copying goatools/grouper/grprobj.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,917 copying goatools/grouper/colors.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,919 copying goatools/grouper/__init__.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,921 copying goatools/grouper/sorter.py -> build/lib/goatools/grouper 2026-03-13T17:37:28,925 creating build/lib/goatools/parsers 2026-03-13T17:37:28,926 copying goatools/parsers/ncbi_gene_file_reader.py -> build/lib/goatools/parsers 2026-03-13T17:37:28,929 copying goatools/parsers/david_chart.py -> build/lib/goatools/parsers 2026-03-13T17:37:28,931 copying goatools/parsers/__init__.py -> build/lib/goatools/parsers 2026-03-13T17:37:28,933 creating build/lib/goatools/semsim 2026-03-13T17:37:28,935 copying goatools/semsim/__init__.py -> build/lib/goatools/semsim 2026-03-13T17:37:28,937 creating build/lib/goatools/semsim/termwise 2026-03-13T17:37:28,938 copying goatools/semsim/termwise/wang.py -> build/lib/goatools/semsim/termwise 2026-03-13T17:37:28,941 copying goatools/semsim/termwise/dag_a.py -> build/lib/goatools/semsim/termwise 2026-03-13T17:37:28,943 copying goatools/semsim/termwise/__init__.py -> build/lib/goatools/semsim/termwise 2026-03-13T17:37:28,945 running egg_info 2026-03-13T17:37:28,958 writing goatools.egg-info/PKG-INFO 2026-03-13T17:37:28,962 writing dependency_links to goatools.egg-info/dependency_links.txt 2026-03-13T17:37:28,964 writing entry points to goatools.egg-info/entry_points.txt 2026-03-13T17:37:28,965 writing requirements to goatools.egg-info/requires.txt 2026-03-13T17:37:28,967 writing top-level names to goatools.egg-info/top_level.txt 2026-03-13T17:37:29,018 listing git files failed - pretending there aren't any 2026-03-13T17:37:29,022 reading manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:29,033 reading manifest template 'MANIFEST.in' 2026-03-13T17:37:29,035 warning: no previously-included files matching '*' found under directory '.github' 2026-03-13T17:37:29,036 warning: no previously-included files matching '*' found under directory 'data' 2026-03-13T17:37:29,038 warning: no previously-included files matching '*' found under directory 'doc' 2026-03-13T17:37:29,039 warning: no previously-included files matching '*' found under directory 'notebooks' 2026-03-13T17:37:29,040 warning: no previously-included files matching '*' found under directory 'sphinx' 2026-03-13T17:37:29,042 warning: no previously-included files matching '*' found under directory 'tests' 2026-03-13T17:37:29,043 warning: no previously-included files found matching '.*' 2026-03-13T17:37:29,043 adding license file 'LICENSE' 2026-03-13T17:37:29,053 writing manifest file 'goatools.egg-info/SOURCES.txt' 2026-03-13T17:37:29,058 /tmp/pip-build-env-ov1qbdqa/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'goatools.test_data.nbt_3102' is absent from the `packages` configuration. 2026-03-13T17:37:29,058 !! 2026-03-13T17:37:29,059 ******************************************************************************** 2026-03-13T17:37:29,060 ############################ 2026-03-13T17:37:29,060 # Package would be ignored # 2026-03-13T17:37:29,061 ############################ 2026-03-13T17:37:29,061 Python recognizes 'goatools.test_data.nbt_3102' as an importable package[^1], 2026-03-13T17:37:29,062 but it is absent from setuptools' `packages` configuration. 2026-03-13T17:37:29,063 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T17:37:29,063 package, please make sure that 'goatools.test_data.nbt_3102' is explicitly added 2026-03-13T17:37:29,064 to the `packages` configuration field. 2026-03-13T17:37:29,065 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T17:37:29,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T17:37:29,066 instead of `find_packages(...)`/`find:`). 2026-03-13T17:37:29,067 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T17:37:29,069 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T17:37:29,070 If you don't want 'goatools.test_data.nbt_3102' to be distributed and are 2026-03-13T17:37:29,071 already explicitly excluding 'goatools.test_data.nbt_3102' via 2026-03-13T17:37:29,071 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T17:37:29,072 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T17:37:29,072 combination with a more fine grained `package-data` configuration. 2026-03-13T17:37:29,073 You can read more about "package data files" on setuptools documentation page: 2026-03-13T17:37:29,074 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T17:37:29,075 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T17:37:29,075 even if it does not contain any `.py` files. 2026-03-13T17:37:29,076 On the other hand, currently there is no concept of package data 2026-03-13T17:37:29,076 directory, all directories are treated like packages. 2026-03-13T17:37:29,077 ******************************************************************************** 2026-03-13T17:37:29,078 !! 2026-03-13T17:37:29,078 check.warn(importable) 2026-03-13T17:37:29,082 copying goatools/.gitignore -> build/lib/goatools 2026-03-13T17:37:29,084 creating build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,085 copying goatools/test_data/nbt_3102/README.md -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,088 copying goatools/test_data/nbt_3102/__init__.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,091 copying goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,095 copying goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,098 copying goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,102 copying goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,104 copying goatools/test_data/nbt_3102/symbol2geneid.py -> build/lib/goatools/test_data/nbt_3102 2026-03-13T17:37:29,133 installing to build/bdist.linux-armv7l/wheel 2026-03-13T17:37:29,134 running install 2026-03-13T17:37:29,157 running install_lib 2026-03-13T17:37:29,166 creating build/bdist.linux-armv7l/wheel 2026-03-13T17:37:29,169 creating build/bdist.linux-armv7l/wheel/goatools 2026-03-13T17:37:29,170 copying build/lib/goatools/statsdescribe.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,173 creating build/bdist.linux-armv7l/wheel/goatools/rpt 2026-03-13T17:37:29,175 copying build/lib/goatools/rpt/nts_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,177 copying build/lib/goatools/rpt/goea_nt_xfrm.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,179 copying build/lib/goatools/rpt/prtfmt.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,181 copying build/lib/goatools/rpt/rpt_lev_depth.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,183 copying build/lib/goatools/rpt/write_hierarchy_base.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,186 copying build/lib/goatools/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/rpt 2026-03-13T17:37:29,188 creating build/bdist.linux-armv7l/wheel/goatools/goea 2026-03-13T17:37:29,190 copying build/lib/goatools/goea/go_enrichment_ns.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T17:37:29,192 copying build/lib/goatools/goea/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/goea 2026-03-13T17:37:29,195 creating build/bdist.linux-armv7l/wheel/goatools/godag 2026-03-13T17:37:29,196 copying build/lib/goatools/godag/relationship_combos.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,199 copying build/lib/goatools/godag/prttime.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,201 copying build/lib/goatools/godag/obo_optional_attributes.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,203 copying build/lib/goatools/godag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,206 copying build/lib/goatools/godag/relationship_str.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,208 copying build/lib/goatools/godag/consts.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,210 copying build/lib/goatools/godag/reldepth.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,212 copying build/lib/goatools/godag/prtfncs.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,215 copying build/lib/goatools/godag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,217 copying build/lib/goatools/godag/typedef.py -> build/bdist.linux-armv7l/wheel/./goatools/godag 2026-03-13T17:37:29,219 creating build/bdist.linux-armv7l/wheel/goatools/cli 2026-03-13T17:37:29,221 copying build/lib/goatools/cli/plot_go_term.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,223 copying build/lib/goatools/cli/find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,226 copying build/lib/goatools/cli/prt_terms.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,228 copying build/lib/goatools/cli/gos_get.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,230 copying build/lib/goatools/cli/fetch_associations.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,232 copying build/lib/goatools/cli/ncbi_gene_results_to_python.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,235 copying build/lib/goatools/cli/map_to_slim.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,237 copying build/lib/goatools/cli/compare_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,240 copying build/lib/goatools/cli/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,242 copying build/lib/goatools/cli/wr_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,245 copying build/lib/goatools/cli/docopt_parse.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,247 copying build/lib/goatools/cli/main.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,249 copying build/lib/goatools/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,251 copying build/lib/goatools/cli/grouped.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,254 copying build/lib/goatools/cli/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/cli 2026-03-13T17:37:29,257 copying build/lib/goatools/go_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,260 copying build/lib/goatools/godag_obosm.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,263 creating build/bdist.linux-armv7l/wheel/goatools/grouper 2026-03-13T17:37:29,265 copying build/lib/goatools/grouper/read_goids.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,268 copying build/lib/goatools/grouper/grprdflts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,271 copying build/lib/goatools/grouper/wrxlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,273 copying build/lib/goatools/grouper/aart_geneproducts_all.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,276 copying build/lib/goatools/grouper/plotobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,279 copying build/lib/goatools/grouper/sorter_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,282 copying build/lib/goatools/grouper/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,284 copying build/lib/goatools/grouper/grprobj_init.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,286 copying build/lib/goatools/grouper/grprplt.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,289 copying build/lib/goatools/grouper/hdrgos.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,291 copying build/lib/goatools/grouper/aart_geneproducts_one.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,293 copying build/lib/goatools/grouper/tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,295 copying build/lib/goatools/grouper/sorter_nts.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,297 copying build/lib/goatools/grouper/wr_sections.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,300 copying build/lib/goatools/grouper/grprobj.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,303 copying build/lib/goatools/grouper/colors.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,305 copying build/lib/goatools/grouper/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,307 copying build/lib/goatools/grouper/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/grouper 2026-03-13T17:37:29,310 copying build/lib/goatools/mapslim.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,312 copying build/lib/goatools/.gitignore -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,314 copying build/lib/goatools/godag_small.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,316 copying build/lib/goatools/__main__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,318 copying build/lib/goatools/wr_tbl_class.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,321 copying build/lib/goatools/nt_utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:29,324 creating build/bdist.linux-armv7l/wheel/goatools/test_data 2026-03-13T17:37:29,414 copying build/lib/goatools/test_data/genes_NCBI_10090_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,624 copying build/lib/goatools/test_data/gjoneska_goea_transient_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,702 copying build/lib/goatools/test_data/gjoneska_goea_transient_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,757 creating build/bdist.linux-armv7l/wheel/goatools/test_data/sections 2026-03-13T17:37:29,758 copying build/lib/goatools/test_data/sections/gjoneska_pfenning.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T17:37:29,761 copying build/lib/goatools/test_data/sections/dvk2018_genefamilyclusters.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T17:37:29,763 copying build/lib/goatools/test_data/sections/data2018_07_find_enrichment.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T17:37:29,766 copying build/lib/goatools/test_data/sections/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/sections 2026-03-13T17:37:29,769 creating build/bdist.linux-armv7l/wheel/goatools/test_data/cli 2026-03-13T17:37:29,770 copying build/lib/goatools/test_data/cli/find_enrichment_dflts.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T17:37:29,772 copying build/lib/goatools/test_data/cli/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/cli 2026-03-13T17:37:29,774 copying build/lib/goatools/test_data/gjoneska_goea_late_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,890 copying build/lib/goatools/test_data/nature3102_goea.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,892 copying build/lib/goatools/test_data/checks.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,894 copying build/lib/goatools/test_data/gjoneska_2015_ensmusg2symbol.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,904 copying build/lib/goatools/test_data/wr_subobo.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:29,906 copying build/lib/goatools/test_data/gjoneska_goea_consistent_decrease.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:30,014 copying build/lib/goatools/test_data/genes_NCBI_9606_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:30,196 copying build/lib/goatools/test_data/genes_NCBI_7227_ProteinCoding.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:30,322 copying build/lib/goatools/test_data/gjoneska_goea_consistent_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:30,417 copying build/lib/goatools/test_data/genes_NCBI_10090_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:30,585 creating build/bdist.linux-armv7l/wheel/goatools/test_data/nbt_3102 2026-03-13T17:37:30,586 copying build/lib/goatools/test_data/nbt_3102/symbol2geneid.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,589 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S6.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,591 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,594 copying build/lib/goatools/test_data/nbt_3102/nbt.3102-S4.xlsx -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,598 copying build/lib/goatools/test_data/nbt_3102/README.md -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,600 copying build/lib/goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,602 copying build/lib/goatools/test_data/nbt_3102/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data/nbt_3102 2026-03-13T17:37:30,604 copying build/lib/goatools/test_data/genes_NCBI_9606_All.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,073 copying build/lib/goatools/test_data/gafs.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,075 copying build/lib/goatools/test_data/godag_timed.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,078 copying build/lib/goatools/test_data/gjoneska_goea_late_increase.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,213 copying build/lib/goatools/test_data/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,215 copying build/lib/goatools/test_data/sorter.py -> build/bdist.linux-armv7l/wheel/./goatools/test_data 2026-03-13T17:37:31,218 creating build/bdist.linux-armv7l/wheel/goatools/anno 2026-03-13T17:37:31,219 copying build/lib/goatools/anno/gaf_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,221 copying build/lib/goatools/anno/update_association.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,223 creating build/bdist.linux-armv7l/wheel/goatools/anno/init 2026-03-13T17:37:31,224 copying build/lib/goatools/anno/init/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,226 copying build/lib/goatools/anno/init/reader_idtogos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,229 copying build/lib/goatools/anno/init/reader_gaf.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,231 copying build/lib/goatools/anno/init/reader_genetogo.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,233 copying build/lib/goatools/anno/init/reader_gpad.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,236 copying build/lib/goatools/anno/init/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/init 2026-03-13T17:37:31,238 creating build/bdist.linux-armv7l/wheel/goatools/anno/extensions 2026-03-13T17:37:31,239 copying build/lib/goatools/anno/extensions/extension.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T17:37:31,241 copying build/lib/goatools/anno/extensions/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T17:37:31,243 copying build/lib/goatools/anno/extensions/extensions.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T17:37:31,245 copying build/lib/goatools/anno/extensions/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno/extensions 2026-03-13T17:37:31,247 copying build/lib/goatools/anno/factory.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,249 copying build/lib/goatools/anno/dnld_ebi_goa.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,251 copying build/lib/goatools/anno/annoreader_base.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,253 copying build/lib/goatools/anno/genetogo_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,255 copying build/lib/goatools/anno/opts.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,258 copying build/lib/goatools/anno/gpad_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,260 copying build/lib/goatools/anno/eco2group.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,263 copying build/lib/goatools/anno/broad_gos.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,266 copying build/lib/goatools/anno/idtogos_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,268 copying build/lib/goatools/anno/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/anno 2026-03-13T17:37:31,271 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag 2026-03-13T17:37:31,272 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/rpt 2026-03-13T17:37:31,273 copying build/lib/goatools/gosubdag/rpt/write_hierarchy.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T17:37:31,276 copying build/lib/goatools/gosubdag/rpt/wr_xlsx.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T17:37:31,279 copying build/lib/goatools/gosubdag/rpt/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/rpt 2026-03-13T17:37:31,282 creating build/bdist.linux-armv7l/wheel/goatools/gosubdag/plot 2026-03-13T17:37:31,283 copying build/lib/goatools/gosubdag/plot/plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,285 copying build/lib/goatools/gosubdag/plot/go2color.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,288 copying build/lib/goatools/gosubdag/plot/go_node.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,291 copying build/lib/goatools/gosubdag/plot/go_name_shorten.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,293 copying build/lib/goatools/gosubdag/plot/go_edge.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,296 copying build/lib/goatools/gosubdag/plot/goea_results.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,298 copying build/lib/goatools/gosubdag/plot/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,300 copying build/lib/goatools/gosubdag/plot/gosubdag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag/plot 2026-03-13T17:37:31,303 copying build/lib/goatools/gosubdag/go_paths.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,305 copying build/lib/goatools/gosubdag/go_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,307 copying build/lib/goatools/gosubdag/godag_rcnt_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,309 copying build/lib/goatools/gosubdag/utils.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,311 copying build/lib/goatools/gosubdag/godag_rcnt.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,313 copying build/lib/goatools/gosubdag/gosubdag.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,315 copying build/lib/goatools/gosubdag/go_edges.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,318 copying build/lib/goatools/gosubdag/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,320 copying build/lib/goatools/gosubdag/go_most_specific.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,322 copying build/lib/goatools/gosubdag/gosubdag_init.py -> build/bdist.linux-armv7l/wheel/./goatools/gosubdag 2026-03-13T17:37:31,324 copying build/lib/goatools/ratio.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,326 copying build/lib/goatools/utils.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,328 copying build/lib/goatools/randseed.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,330 copying build/lib/goatools/pvalcalc.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,332 copying build/lib/goatools/evidence_codes.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,335 copying build/lib/goatools/obo_parser.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,337 copying build/lib/goatools/associations.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,340 creating build/bdist.linux-armv7l/wheel/goatools/parsers 2026-03-13T17:37:31,342 copying build/lib/goatools/parsers/ncbi_gene_file_reader.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T17:37:31,344 copying build/lib/goatools/parsers/david_chart.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T17:37:31,346 copying build/lib/goatools/parsers/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/parsers 2026-03-13T17:37:31,349 creating build/bdist.linux-armv7l/wheel/goatools/semsim 2026-03-13T17:37:31,350 creating build/bdist.linux-armv7l/wheel/goatools/semsim/termwise 2026-03-13T17:37:31,351 copying build/lib/goatools/semsim/termwise/wang.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T17:37:31,354 copying build/lib/goatools/semsim/termwise/dag_a.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T17:37:31,356 copying build/lib/goatools/semsim/termwise/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim/termwise 2026-03-13T17:37:31,358 copying build/lib/goatools/semsim/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools/semsim 2026-03-13T17:37:31,360 copying build/lib/goatools/wr_tbl.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,362 copying build/lib/goatools/godag_plot.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,365 copying build/lib/goatools/base.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,368 copying build/lib/goatools/multiple_testing.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,370 copying build/lib/goatools/version.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,372 copying build/lib/goatools/obo_tasks.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,374 copying build/lib/goatools/go_search.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,376 copying build/lib/goatools/__init__.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,378 copying build/lib/goatools/semantic.py -> build/bdist.linux-armv7l/wheel/./goatools 2026-03-13T17:37:31,380 running install_egg_info 2026-03-13T17:37:31,391 Copying goatools.egg-info to build/bdist.linux-armv7l/wheel/./goatools-1.6.4-py3.11.egg-info 2026-03-13T17:37:31,404 running install_scripts 2026-03-13T17:37:31,417 creating build/bdist.linux-armv7l/wheel/goatools-1.6.4.dist-info/WHEEL 2026-03-13T17:37:31,419 creating '/tmp/pip-wheel-t7jkblld/.tmp-i4fww15t/goatools-1.6.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T17:37:31,422 adding 'goatools/.gitignore' 2026-03-13T17:37:31,423 adding 'goatools/__init__.py' 2026-03-13T17:37:31,424 adding 'goatools/__main__.py' 2026-03-13T17:37:31,426 adding 'goatools/associations.py' 2026-03-13T17:37:31,428 adding 'goatools/base.py' 2026-03-13T17:37:31,430 adding 'goatools/evidence_codes.py' 2026-03-13T17:37:31,433 adding 'goatools/go_enrichment.py' 2026-03-13T17:37:31,435 adding 'goatools/go_search.py' 2026-03-13T17:37:31,436 adding 'goatools/godag_obosm.py' 2026-03-13T17:37:31,438 adding 'goatools/godag_plot.py' 2026-03-13T17:37:31,439 adding 'goatools/godag_small.py' 2026-03-13T17:37:31,441 adding 'goatools/mapslim.py' 2026-03-13T17:37:31,443 adding 'goatools/multiple_testing.py' 2026-03-13T17:37:31,444 adding 'goatools/nt_utils.py' 2026-03-13T17:37:31,447 adding 'goatools/obo_parser.py' 2026-03-13T17:37:31,449 adding 'goatools/obo_tasks.py' 2026-03-13T17:37:31,450 adding 'goatools/pvalcalc.py' 2026-03-13T17:37:31,451 adding 'goatools/randseed.py' 2026-03-13T17:37:31,453 adding 'goatools/ratio.py' 2026-03-13T17:37:31,455 adding 'goatools/semantic.py' 2026-03-13T17:37:31,457 adding 'goatools/statsdescribe.py' 2026-03-13T17:37:31,458 adding 'goatools/utils.py' 2026-03-13T17:37:31,459 adding 'goatools/version.py' 2026-03-13T17:37:31,461 adding 'goatools/wr_tbl.py' 2026-03-13T17:37:31,463 adding 'goatools/wr_tbl_class.py' 2026-03-13T17:37:31,465 adding 'goatools/anno/__init__.py' 2026-03-13T17:37:31,467 adding 'goatools/anno/annoreader_base.py' 2026-03-13T17:37:31,469 adding 'goatools/anno/broad_gos.py' 2026-03-13T17:37:31,471 adding 'goatools/anno/dnld_ebi_goa.py' 2026-03-13T17:37:31,473 adding 'goatools/anno/eco2group.py' 2026-03-13T17:37:31,475 adding 'goatools/anno/factory.py' 2026-03-13T17:37:31,476 adding 'goatools/anno/gaf_reader.py' 2026-03-13T17:37:31,478 adding 'goatools/anno/genetogo_reader.py' 2026-03-13T17:37:31,479 adding 'goatools/anno/gpad_reader.py' 2026-03-13T17:37:31,481 adding 'goatools/anno/idtogos_reader.py' 2026-03-13T17:37:31,482 adding 'goatools/anno/opts.py' 2026-03-13T17:37:31,484 adding 'goatools/anno/update_association.py' 2026-03-13T17:37:31,485 adding 'goatools/anno/extensions/__init__.py' 2026-03-13T17:37:31,487 adding 'goatools/anno/extensions/extension.py' 2026-03-13T17:37:31,488 adding 'goatools/anno/extensions/extensions.py' 2026-03-13T17:37:31,489 adding 'goatools/anno/extensions/factory.py' 2026-03-13T17:37:31,491 adding 'goatools/anno/init/__init__.py' 2026-03-13T17:37:31,494 adding 'goatools/anno/init/reader_gaf.py' 2026-03-13T17:37:31,496 adding 'goatools/anno/init/reader_genetogo.py' 2026-03-13T17:37:31,498 adding 'goatools/anno/init/reader_gpad.py' 2026-03-13T17:37:31,500 adding 'goatools/anno/init/reader_idtogos.py' 2026-03-13T17:37:31,501 adding 'goatools/anno/init/utils.py' 2026-03-13T17:37:31,503 adding 'goatools/cli/__init__.py' 2026-03-13T17:37:31,505 adding 'goatools/cli/compare_gos.py' 2026-03-13T17:37:31,507 adding 'goatools/cli/docopt_parse.py' 2026-03-13T17:37:31,508 adding 'goatools/cli/fetch_associations.py' 2026-03-13T17:37:31,512 adding 'goatools/cli/find_enrichment.py' 2026-03-13T17:37:31,514 adding 'goatools/cli/gos_get.py' 2026-03-13T17:37:31,517 adding 'goatools/cli/gosubdag_plot.py' 2026-03-13T17:37:31,518 adding 'goatools/cli/grouped.py' 2026-03-13T17:37:31,519 adding 'goatools/cli/main.py' 2026-03-13T17:37:31,521 adding 'goatools/cli/map_to_slim.py' 2026-03-13T17:37:31,523 adding 'goatools/cli/ncbi_gene_results_to_python.py' 2026-03-13T17:37:31,524 adding 'goatools/cli/plot_go_term.py' 2026-03-13T17:37:31,525 adding 'goatools/cli/prt_terms.py' 2026-03-13T17:37:31,527 adding 'goatools/cli/wr_hierarchy.py' 2026-03-13T17:37:31,528 adding 'goatools/cli/wr_sections.py' 2026-03-13T17:37:31,530 adding 'goatools/godag/__init__.py' 2026-03-13T17:37:31,531 adding 'goatools/godag/consts.py' 2026-03-13T17:37:31,533 adding 'goatools/godag/go_tasks.py' 2026-03-13T17:37:31,534 adding 'goatools/godag/obo_optional_attributes.py' 2026-03-13T17:37:31,536 adding 'goatools/godag/prtfncs.py' 2026-03-13T17:37:31,537 adding 'goatools/godag/prttime.py' 2026-03-13T17:37:31,538 adding 'goatools/godag/relationship_combos.py' 2026-03-13T17:37:31,540 adding 'goatools/godag/relationship_str.py' 2026-03-13T17:37:31,541 adding 'goatools/godag/reldepth.py' 2026-03-13T17:37:31,543 adding 'goatools/godag/typedef.py' 2026-03-13T17:37:31,544 adding 'goatools/goea/__init__.py' 2026-03-13T17:37:31,546 adding 'goatools/goea/go_enrichment_ns.py' 2026-03-13T17:37:31,547 adding 'goatools/gosubdag/__init__.py' 2026-03-13T17:37:31,549 adding 'goatools/gosubdag/go_edges.py' 2026-03-13T17:37:31,551 adding 'goatools/gosubdag/go_most_specific.py' 2026-03-13T17:37:31,552 adding 'goatools/gosubdag/go_paths.py' 2026-03-13T17:37:31,554 adding 'goatools/gosubdag/go_tasks.py' 2026-03-13T17:37:31,555 adding 'goatools/gosubdag/godag_rcnt.py' 2026-03-13T17:37:31,557 adding 'goatools/gosubdag/godag_rcnt_init.py' 2026-03-13T17:37:31,558 adding 'goatools/gosubdag/gosubdag.py' 2026-03-13T17:37:31,560 adding 'goatools/gosubdag/gosubdag_init.py' 2026-03-13T17:37:31,562 adding 'goatools/gosubdag/utils.py' 2026-03-13T17:37:31,563 adding 'goatools/gosubdag/plot/__init__.py' 2026-03-13T17:37:31,565 adding 'goatools/gosubdag/plot/go2color.py' 2026-03-13T17:37:31,566 adding 'goatools/gosubdag/plot/go_edge.py' 2026-03-13T17:37:31,568 adding 'goatools/gosubdag/plot/go_name_shorten.py' 2026-03-13T17:37:31,569 adding 'goatools/gosubdag/plot/go_node.py' 2026-03-13T17:37:31,571 adding 'goatools/gosubdag/plot/goea_results.py' 2026-03-13T17:37:31,573 adding 'goatools/gosubdag/plot/gosubdag_plot.py' 2026-03-13T17:37:31,575 adding 'goatools/gosubdag/plot/plot.py' 2026-03-13T17:37:31,576 adding 'goatools/gosubdag/rpt/__init__.py' 2026-03-13T17:37:31,578 adding 'goatools/gosubdag/rpt/wr_xlsx.py' 2026-03-13T17:37:31,580 adding 'goatools/gosubdag/rpt/write_hierarchy.py' 2026-03-13T17:37:31,582 adding 'goatools/grouper/__init__.py' 2026-03-13T17:37:31,583 adding 'goatools/grouper/aart_geneproducts_all.py' 2026-03-13T17:37:31,585 adding 'goatools/grouper/aart_geneproducts_one.py' 2026-03-13T17:37:31,587 adding 'goatools/grouper/colors.py' 2026-03-13T17:37:31,588 adding 'goatools/grouper/grprdflts.py' 2026-03-13T17:37:31,590 adding 'goatools/grouper/grprobj.py' 2026-03-13T17:37:31,592 adding 'goatools/grouper/grprobj_init.py' 2026-03-13T17:37:31,594 adding 'goatools/grouper/grprplt.py' 2026-03-13T17:37:31,595 adding 'goatools/grouper/hdrgos.py' 2026-03-13T17:37:31,597 adding 'goatools/grouper/plotobj.py' 2026-03-13T17:37:31,599 adding 'goatools/grouper/read_goids.py' 2026-03-13T17:37:31,601 adding 'goatools/grouper/sorter.py' 2026-03-13T17:37:31,603 adding 'goatools/grouper/sorter_gos.py' 2026-03-13T17:37:31,604 adding 'goatools/grouper/sorter_nts.py' 2026-03-13T17:37:31,605 adding 'goatools/grouper/tasks.py' 2026-03-13T17:37:31,607 adding 'goatools/grouper/utils.py' 2026-03-13T17:37:31,608 adding 'goatools/grouper/wr_sections.py' 2026-03-13T17:37:31,610 adding 'goatools/grouper/wrxlsx.py' 2026-03-13T17:37:31,612 adding 'goatools/parsers/__init__.py' 2026-03-13T17:37:31,614 adding 'goatools/parsers/david_chart.py' 2026-03-13T17:37:31,616 adding 'goatools/parsers/ncbi_gene_file_reader.py' 2026-03-13T17:37:31,618 adding 'goatools/rpt/__init__.py' 2026-03-13T17:37:31,619 adding 'goatools/rpt/goea_nt_xfrm.py' 2026-03-13T17:37:31,621 adding 'goatools/rpt/nts_xfrm.py' 2026-03-13T17:37:31,622 adding 'goatools/rpt/prtfmt.py' 2026-03-13T17:37:31,624 adding 'goatools/rpt/rpt_lev_depth.py' 2026-03-13T17:37:31,625 adding 'goatools/rpt/write_hierarchy_base.py' 2026-03-13T17:37:31,626 adding 'goatools/semsim/__init__.py' 2026-03-13T17:37:31,628 adding 'goatools/semsim/termwise/__init__.py' 2026-03-13T17:37:31,629 adding 'goatools/semsim/termwise/dag_a.py' 2026-03-13T17:37:31,631 adding 'goatools/semsim/termwise/wang.py' 2026-03-13T17:37:31,632 adding 'goatools/test_data/__init__.py' 2026-03-13T17:37:31,634 adding 'goatools/test_data/checks.py' 2026-03-13T17:37:31,635 adding 'goatools/test_data/gafs.py' 2026-03-13T17:37:32,408 adding 'goatools/test_data/genes_NCBI_10090_All.py' 2026-03-13T17:37:33,377 adding 'goatools/test_data/genes_NCBI_10090_ProteinCoding.py' 2026-03-13T17:37:34,037 adding 'goatools/test_data/genes_NCBI_7227_ProteinCoding.py' 2026-03-13T17:37:35,841 adding 'goatools/test_data/genes_NCBI_9606_All.py' 2026-03-13T17:37:36,874 adding 'goatools/test_data/genes_NCBI_9606_ProteinCoding.py' 2026-03-13T17:37:36,997 adding 'goatools/test_data/gjoneska_2015_ensmusg2symbol.py' 2026-03-13T17:37:37,368 adding 'goatools/test_data/gjoneska_goea_consistent_decrease.py' 2026-03-13T17:37:37,835 adding 'goatools/test_data/gjoneska_goea_consistent_increase.py' 2026-03-13T17:37:38,261 adding 'goatools/test_data/gjoneska_goea_late_decrease.py' 2026-03-13T17:37:38,750 adding 'goatools/test_data/gjoneska_goea_late_increase.py' 2026-03-13T17:37:39,011 adding 'goatools/test_data/gjoneska_goea_transient_decrease.py' 2026-03-13T17:37:39,334 adding 'goatools/test_data/gjoneska_goea_transient_increase.py' 2026-03-13T17:37:39,366 adding 'goatools/test_data/godag_timed.py' 2026-03-13T17:37:39,368 adding 'goatools/test_data/nature3102_goea.py' 2026-03-13T17:37:39,370 adding 'goatools/test_data/sorter.py' 2026-03-13T17:37:39,371 adding 'goatools/test_data/wr_subobo.py' 2026-03-13T17:37:39,373 adding 'goatools/test_data/cli/__init__.py' 2026-03-13T17:37:39,375 adding 'goatools/test_data/cli/find_enrichment_dflts.py' 2026-03-13T17:37:39,376 adding 'goatools/test_data/nbt_3102/README.md' 2026-03-13T17:37:39,378 adding 'goatools/test_data/nbt_3102/__init__.py' 2026-03-13T17:37:39,383 adding 'goatools/test_data/nbt_3102/nbt.3102-S4.xlsx' 2026-03-13T17:37:39,386 adding 'goatools/test_data/nbt_3102/nbt.3102-S4_GeneIDs.xlsx' 2026-03-13T17:37:39,390 adding 'goatools/test_data/nbt_3102/nbt.3102-S6.xlsx' 2026-03-13T17:37:39,393 adding 'goatools/test_data/nbt_3102/nbt3102_GO_word_genes.txt' 2026-03-13T17:37:39,395 adding 'goatools/test_data/nbt_3102/symbol2geneid.py' 2026-03-13T17:37:39,396 adding 'goatools/test_data/sections/__init__.py' 2026-03-13T17:37:39,398 adding 'goatools/test_data/sections/data2018_07_find_enrichment.py' 2026-03-13T17:37:39,401 adding 'goatools/test_data/sections/dvk2018_genefamilyclusters.py' 2026-03-13T17:37:39,403 adding 'goatools/test_data/sections/gjoneska_pfenning.py' 2026-03-13T17:37:39,406 adding 'goatools-1.6.4.dist-info/licenses/LICENSE' 2026-03-13T17:37:39,408 adding 'goatools-1.6.4.dist-info/METADATA' 2026-03-13T17:37:39,409 adding 'goatools-1.6.4.dist-info/WHEEL' 2026-03-13T17:37:39,410 adding 'goatools-1.6.4.dist-info/entry_points.txt' 2026-03-13T17:37:39,411 adding 'goatools-1.6.4.dist-info/top_level.txt' 2026-03-13T17:37:39,414 adding 'goatools-1.6.4.dist-info/RECORD' 2026-03-13T17:37:39,627 removing build/bdist.linux-armv7l/wheel 2026-03-13T17:37:40,506 Building wheel for goatools (pyproject.toml): finished with status 'done' 2026-03-13T17:37:40,825 Created wheel for goatools: filename=goatools-1.6.4-py3-none-any.whl size=15769001 sha256=4ed612327940e450242f18f183e49889e2c205969808187d72ac5564d9ad2d45 2026-03-13T17:37:40,826 Stored in directory: /tmp/pip-ephem-wheel-cache-gjc3mvfq/wheels/d9/bc/4b/75849de284b7b4d1843a8272c66ef867814619ba61c14a22ab 2026-03-13T17:37:40,851 Successfully built goatools 2026-03-13T17:37:41,336 Removed build tracker: '/tmp/pip-build-tracker-g83j8v2d'