2026-03-13T22:04:27,299 Created temporary directory: /tmp/pip-ephem-wheel-cache-gxbx3awf 2026-03-13T22:04:27,301 Created temporary directory: /tmp/pip-build-tracker-_b7sh3za 2026-03-13T22:04:27,302 Initialized build tracking at /tmp/pip-build-tracker-_b7sh3za 2026-03-13T22:04:27,302 Created build tracker: /tmp/pip-build-tracker-_b7sh3za 2026-03-13T22:04:27,302 Entered build tracker: /tmp/pip-build-tracker-_b7sh3za 2026-03-13T22:04:27,303 Created temporary directory: /tmp/pip-wheel-9sldegfg 2026-03-13T22:04:27,306 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T22:04:27,309 Created temporary directory: /tmp/pip-ephem-wheel-cache-zyraenay 2026-03-13T22:04:27,333 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T22:04:27,337 2 location(s) to search for versions of rna-tools: 2026-03-13T22:04:27,337 * https://pypi.org/simple/rna-tools/ 2026-03-13T22:04:27,337 * https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:04:27,338 Fetching project page and analyzing links: https://pypi.org/simple/rna-tools/ 2026-03-13T22:04:27,339 Getting page https://pypi.org/simple/rna-tools/ 2026-03-13T22:04:27,340 Found index url https://pypi.org/simple 2026-03-13T22:04:27,565 Fetched page https://pypi.org/simple/rna-tools/ as application/vnd.pypi.simple.v1+json 2026-03-13T22:04:27,589 Skipping link: No binaries permitted for rna-tools: 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2026-03-13T22:04:27,609 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e0/92/4010b5d4bacc7047fb68d0eb51aa21d18968bead37b87bad04c07730b855/rna_tools-3.5.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,609 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ac/4c/606fe4ea704d03e186e82e2cc94e01f4c895e9c1cb0dac8d72bd613b3644/rna_tools-3.5.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,610 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f6/e8/647108209022fa3ff2b69af1ed16a861981096211df6efe0d8dc1da056d5/rna_tools-3.6-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,610 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/03/85/c816e24a9acd50ab582bfba3048f23f1a59a012cd8e979c93b4634027b35/rna_tools-3.6.1-py3-none-any.whl (from 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2026-03-13T22:04:27,617 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/06/33/f1200ba13560982209354d0f0dc5e7497ade51d176f68a8dbcc229fe1085/rna_tools-3.7.12-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,618 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/71/528a9fa0822567e48d0e5fd72dacdf52547145fcf5dcc5f09536bd255f49/rna_tools-3.7.13-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,618 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/74/8c/77cfd3f1294bc4935f10f93c6e69a86189948fd06d2e31e6d48e24a6063a/rna_tools-3.7.14-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,619 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1e/fe/1c9720fa09b24440bb9508d8a2673892884c5fc5d5b4bff841bd886761c5/rna_tools-3.7.15-py3-none-any.whl (from 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2026-03-13T22:04:27,645 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/56/6c/bd8607e69de5e63f72decf4398bee9c90ee391eff6d4451005de8156ca15/rna_tools-3.19-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,645 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ae/5f/e57ac244bd51cff84868a22eb6a5faf2c1b6b616bcd6b4e9e47c3e1f1c8b/rna_tools-3.20-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,646 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/8b/01/201b394e887e5e7f5b719ed76710649177c687c99e7223a9ea7943266e0e/rna_tools-3.20.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,646 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1f/f1/2b93875467d8768d8d5964319bf3a942135385be9d4f0ce6a5ff214b7452/rna_tools-3.20.2-py3-none-any.whl (from 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No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d3/86/393db491384fe40b69b2af4035bd6e45f91d5e184d8e7b0e8c9b21cdcc53/rna_tools-3.22.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,652 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/54/f7/84af3db9a8d2337c6af632fff3194d196e534dfd47ba2dd69f515511be9f/rna_tools-3.23.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,653 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/77/4c/d5eddc44da8b8f903179877d2e4fd21768acc11776d222be5030fd95d8c7/rna_tools-3.23.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,653 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f7/04/4f4271af4cec16f9d14ad605bb6b934f210cfcf97af831e9e9de6b87c332/rna_tools-3.25-py3-none-any.whl (from 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https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,659 Found link https://files.pythonhosted.org/packages/8e/0e/dec7fcbaa1c11e52a2a4c9ade27386bd52043aa8e99989840b47a23774a2/rna_tools-3.25.3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.3 2026-03-13T22:04:27,660 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f9/31/9a2c82a0e5ea19b639f0b32c2ce4095b7614721edd39c296e9e01351abbe/rna_tools-3.25.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,661 Found link https://files.pythonhosted.org/packages/9b/83/23c17faaf88b230aef89f9267d550f1e1f733bc39420c0b2a99fdd266400/rna_tools-3.25.4.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.4 2026-03-13T22:04:27,661 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/24/e9/aac4dbd96a5ca08a80501fc729717cba92e19d00c13e84701a8c0a526004/rna_tools-3.26-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,662 Found link https://files.pythonhosted.org/packages/76/42/2335539142cacb855a106e5ae3d29a222e4d07f3f04f191d063e8a6752b8/rna_tools-3.26.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.26 2026-03-13T22:04:27,663 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/a8/ccde277f837dfd1d8c2de1a90d739f94eaf458ac8c732afc273824cec49f/rna_tools-3.27.post0.dev3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,664 Found link https://files.pythonhosted.org/packages/ff/02/8c7fed3b483197fded9567fdbcf783e9b8b0debcb26196a9638fe9eae58d/rna_tools-3.27.post0.dev3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.post0.dev3 2026-03-13T22:04:27,664 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ea/5b/ed6a000bc88c7024c124e3baeed34de23ab8bee8a7f95e0e85f005f309bf/rna_tools-3.27.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,665 Found link https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.1 2026-03-13T22:04:27,665 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/bb/b5/9a0b0229128bf45033d34a13faaec31a4d55ccf419f5e212c9792aa351e2/rna_tools-3.27.1.post0.dev21-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,666 Found link https://files.pythonhosted.org/packages/c1/8f/a0690346991f44c2ee30ef924f446b5370d68c54c8ccdb2c09d97e930c0c/rna_tools-3.27.1.post0.dev21.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.1.post0.dev21 2026-03-13T22:04:27,666 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/49/5f/15ebedb87bbe27e1a48d1c0633e8141ef12e87d00054d1dde907cacad6e6/rna_tools-3.27.2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:04:27,667 Found link https://files.pythonhosted.org/packages/ce/da/db01dd43a575c45a02f0962ce189fde58ce5c467b4a17773a7f444fdf7b6/rna_tools-3.27.2.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.2 2026-03-13T22:04:27,668 Fetching project page and analyzing links: https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:04:27,669 Getting page https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:04:27,670 Found index url https://www.piwheels.org/simple 2026-03-13T22:04:27,832 Fetched page https://www.piwheels.org/simple/rna-tools/ as text/html 2026-03-13T22:04:27,836 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.27.1-py3-none-any.whl#sha256=b5a4e359452a1ee4f7bfbac7f389179ff0af44d1c89a2305c95c4fef9d431cde (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,837 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.27.post0.dev3-py3-none-any.whl#sha256=9da4a01e580dc3d8633e390a1113c6592051ea1eea774c49f5cfab7284ef0bbf (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,838 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.3-py3-none-any.whl#sha256=165a43111ce2ee359c011e3c133fb52b70f9bb2fe74ac0c44ec118cafc40798d (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,838 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.1.post0.dev1-py3-none-any.whl#sha256=8703a1ac6cd850cf569abe5186cb3e5b63c34b869f74de3cbc7c5c5acc90e8b8 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,839 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.1-py3-none-any.whl#sha256=31a0a058078b01e82235ae72c41ef99cdeae2bfdf03bc1faec83fc61666995d6 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,839 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.post0.dev2-py3-none-any.whl#sha256=465af7e799388e527a2e2b0436144da336a2d02c006bf36c6ae8c2c8ee4bd120 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,841 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/UNKNOWN-0%2Bunknown-py3-none-any.whl#sha256=b4214c42117c74da3961ab3bbaf3ce3e12ea386e102aecb92e8e47c607e842dc (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,841 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.4-py3-none-any.whl#sha256=1194ddbf480426f804e230eb711eb705a79f41efaf61679c966fd6b7fec65e17 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,842 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.3-py3-none-any.whl#sha256=1d45105a5c8cc161b13b088a8e903b5d239701ca023758c17a591a0a0dfb86bb (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,842 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.2-py3-none-any.whl#sha256=7b92483d69eb10c0a144b20d4a546bc79db74de7e1340d8e204c697b1b7b5e20 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,843 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.1-py3-none-any.whl#sha256=c9c26356bd9c8c2b8fef932367a9c0f2982e68353ec6b07872c6762d1654be50 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,843 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-2.25.post0.dev1-py3-none-any.whl#sha256=069317b2d39ca3013977ae7584d23defb1894f6bb42522298a49962020a300f2 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:04:27,844 Skipping link: not a file: https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:04:27,844 Skipping link: not a file: https://pypi.org/simple/rna-tools/ 2026-03-13T22:04:27,866 Given no hashes to check 1 links for project 'rna-tools': discarding no candidates 2026-03-13T22:04:27,884 Collecting rna-tools==3.27.1.post0.dev21 2026-03-13T22:04:27,886 Created temporary directory: /tmp/pip-unpack-1pyg4v71 2026-03-13T22:04:28,103 Downloading rna_tools-3.27.1.post0.dev21.tar.gz (57.5 MB) 2026-03-13T22:04:43,666 Added rna-tools==3.27.1.post0.dev21 from https://files.pythonhosted.org/packages/c1/8f/a0690346991f44c2ee30ef924f446b5370d68c54c8ccdb2c09d97e930c0c/rna_tools-3.27.1.post0.dev21.tar.gz to build tracker '/tmp/pip-build-tracker-_b7sh3za' 2026-03-13T22:04:43,671 Created temporary directory: /tmp/pip-build-env-ipe4xcya 2026-03-13T22:04:43,675 Installing build dependencies: started 2026-03-13T22:04:43,676 Running command pip subprocess to install build dependencies 2026-03-13T22:04:45,020 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T22:04:45,587 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T22:04:45,611 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T22:04:47,434 Collecting setuptools<72 2026-03-13T22:04:47,447 Downloading https://www.piwheels.org/simple/setuptools/setuptools-71.1.0-py3-none-any.whl (2.3 MB) 2026-03-13T22:04:47,773 ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.3/2.3 MB 7.4 MB/s eta 0:00:00 2026-03-13T22:04:48,406 Collecting wheel 2026-03-13T22:04:48,644 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T22:04:48,864 Collecting versioneer 2026-03-13T22:04:48,923 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-03-13T22:04:49,108 Collecting packaging>=24.0 2026-03-13T22:04:49,126 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T22:04:52,100 Installing collected packages: versioneer, setuptools, packaging, wheel 2026-03-13T22:04:52,390 Creating /tmp/pip-build-env-ipe4xcya/overlay/local/bin 2026-03-13T22:04:52,393 changing mode of /tmp/pip-build-env-ipe4xcya/overlay/local/bin/versioneer to 755 2026-03-13T22:04:57,511 changing mode of /tmp/pip-build-env-ipe4xcya/overlay/local/bin/wheel to 755 2026-03-13T22:04:57,540 Successfully installed packaging-26.0 setuptools-71.1.0 versioneer-0.29 wheel-0.46.3 2026-03-13T22:04:57,820 Installing build dependencies: finished with status 'done' 2026-03-13T22:04:57,827 Getting requirements to build wheel: started 2026-03-13T22:04:57,828 Running command Getting requirements to build wheel 2026-03-13T22:04:58,594 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:04:58,595 !! 2026-03-13T22:04:58,596 ******************************************************************************** 2026-03-13T22:04:58,596 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:04:58,597 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:04:58,598 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:04:58,598 calls to avoid build errors in the future. 2026-03-13T22:04:58,600 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:04:58,600 ******************************************************************************** 2026-03-13T22:04:58,602 !! 2026-03-13T22:04:58,602 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:04:58,633 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:300: InformationOnly: Normalizing '3.27.1.post.dev21' to '3.27.1.post0.dev21' 2026-03-13T22:04:58,633 self.metadata.version = self._normalize_version(self.metadata.version) 2026-03-13T22:04:58,658 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:04:58,658 Try to load it from setup.cfg 2026-03-13T22:04:58,659 running egg_info 2026-03-13T22:04:58,665 writing rna_tools.egg-info/PKG-INFO 2026-03-13T22:04:58,669 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-03-13T22:04:58,671 writing requirements to rna_tools.egg-info/requires.txt 2026-03-13T22:04:58,673 writing top-level names to rna_tools.egg-info/top_level.txt 2026-03-13T22:04:58,787 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:04:59,034 reading manifest template 'MANIFEST.in' 2026-03-13T22:04:59,786 adding license file 'LICENSE' 2026-03-13T22:04:59,880 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:04:59,901 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:04:59,901 Try to load it from setup.cfg 2026-03-13T22:04:59,992 Getting requirements to build wheel: finished with status 'done' 2026-03-13T22:04:59,996 Created temporary directory: /tmp/pip-modern-metadata-op0zjw4c 2026-03-13T22:04:59,998 Preparing metadata (pyproject.toml): started 2026-03-13T22:04:59,999 Running command Preparing metadata (pyproject.toml) 2026-03-13T22:05:00,633 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:300: InformationOnly: Normalizing '3.27.1.post.dev21' to '3.27.1.post0.dev21' 2026-03-13T22:05:00,633 self.metadata.version = self._normalize_version(self.metadata.version) 2026-03-13T22:05:00,637 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:05:00,637 !! 2026-03-13T22:05:00,638 ******************************************************************************** 2026-03-13T22:05:00,639 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:05:00,639 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:05:00,640 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:05:00,640 calls to avoid build errors in the future. 2026-03-13T22:05:00,641 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:05:00,642 ******************************************************************************** 2026-03-13T22:05:00,643 !! 2026-03-13T22:05:00,643 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:05:00,665 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:00,666 Try to load it from setup.cfg 2026-03-13T22:05:00,666 running dist_info 2026-03-13T22:05:00,667 creating /tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info 2026-03-13T22:05:00,674 writing /tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/PKG-INFO 2026-03-13T22:05:00,678 writing dependency_links to /tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/dependency_links.txt 2026-03-13T22:05:00,680 writing requirements to /tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/requires.txt 2026-03-13T22:05:00,681 writing top-level names to /tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/top_level.txt 2026-03-13T22:05:00,683 writing manifest file '/tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:05:00,779 reading manifest file '/tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:05:00,781 reading manifest template 'MANIFEST.in' 2026-03-13T22:05:01,562 adding license file 'LICENSE' 2026-03-13T22:05:01,624 writing manifest file '/tmp/pip-modern-metadata-op0zjw4c/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:05:01,645 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:01,646 Try to load it from setup.cfg 2026-03-13T22:05:01,646 creating '/tmp/pip-modern-metadata-op0zjw4c/rna_tools-3.27.1.post0.dev21.dist-info' 2026-03-13T22:05:01,800 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T22:05:01,807 Source in /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861 has version 3.27.1.post0.dev21, which satisfies requirement rna-tools==3.27.1.post0.dev21 from https://files.pythonhosted.org/packages/c1/8f/a0690346991f44c2ee30ef924f446b5370d68c54c8ccdb2c09d97e930c0c/rna_tools-3.27.1.post0.dev21.tar.gz 2026-03-13T22:05:01,808 Removed rna-tools==3.27.1.post0.dev21 from https://files.pythonhosted.org/packages/c1/8f/a0690346991f44c2ee30ef924f446b5370d68c54c8ccdb2c09d97e930c0c/rna_tools-3.27.1.post0.dev21.tar.gz from build tracker '/tmp/pip-build-tracker-_b7sh3za' 2026-03-13T22:05:01,816 Created temporary directory: /tmp/pip-unpack-2h5eakcg 2026-03-13T22:05:01,817 Building wheels for collected packages: rna-tools 2026-03-13T22:05:01,821 Created temporary directory: /tmp/pip-wheel-kwpdn7l_ 2026-03-13T22:05:01,822 Destination directory: /tmp/pip-wheel-kwpdn7l_ 2026-03-13T22:05:01,824 Building wheel for rna-tools (pyproject.toml): started 2026-03-13T22:05:01,825 Running command Building wheel for rna-tools (pyproject.toml) 2026-03-13T22:05:02,466 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:300: InformationOnly: Normalizing '3.27.1.post.dev21' to '3.27.1.post0.dev21' 2026-03-13T22:05:02,466 self.metadata.version = self._normalize_version(self.metadata.version) 2026-03-13T22:05:02,470 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:05:02,471 !! 2026-03-13T22:05:02,472 ******************************************************************************** 2026-03-13T22:05:02,472 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:05:02,473 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:05:02,474 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:05:02,474 calls to avoid build errors in the future. 2026-03-13T22:05:02,475 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:05:02,475 ******************************************************************************** 2026-03-13T22:05:02,476 !! 2026-03-13T22:05:02,477 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:05:02,514 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:02,515 Try to load it from setup.cfg 2026-03-13T22:05:02,515 running bdist_wheel 2026-03-13T22:05:02,534 running build 2026-03-13T22:05:02,535 running build_py 2026-03-13T22:05:02,542 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:02,542 Try to load it from setup.cfg 2026-03-13T22:05:02,543 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:02,543 Try to load it from setup.cfg 2026-03-13T22:05:02,544 creating build 2026-03-13T22:05:02,544 creating build/lib 2026-03-13T22:05:02,545 creating build/lib/rna_tools 2026-03-13T22:05:02,545 copying rna_tools/rna_simrnaweb_download_job.py -> build/lib/rna_tools 2026-03-13T22:05:02,547 copying rna_tools/rna_torsions.py -> build/lib/rna_tools 2026-03-13T22:05:02,549 copying rna_tools/rna_pdb_seq2.py -> build/lib/rna_tools 2026-03-13T22:05:02,551 copying rna_tools/rna_pdb_replace.py -> build/lib/rna_tools 2026-03-13T22:05:02,553 copying rna_tools/rna_pdb_tools.py -> build/lib/rna_tools 2026-03-13T22:05:02,556 copying rna_tools/BlastPDB.py -> build/lib/rna_tools 2026-03-13T22:05:02,558 copying rna_tools/RfamSearch.py -> build/lib/rna_tools 2026-03-13T22:05:02,560 copying rna_tools/SecondaryStructure.py -> build/lib/rna_tools 2026-03-13T22:05:02,561 copying rna_tools/rna_standardize.py -> build/lib/rna_tools 2026-03-13T22:05:02,564 copying rna_tools/rna_dot2ct.py -> build/lib/rna_tools 2026-03-13T22:05:02,565 copying rna_tools/rna_pdb_fetch.py -> build/lib/rna_tools 2026-03-13T22:05:02,567 copying rna_tools/_version.py -> build/lib/rna_tools 2026-03-13T22:05:02,569 copying rna_tools/rna_tools_lib.py -> build/lib/rna_tools 2026-03-13T22:05:02,573 copying rna_tools/rna_tools_config.py -> build/lib/rna_tools 2026-03-13T22:05:02,574 copying rna_tools/rna_secondary_structure_prediction.py -> build/lib/rna_tools 2026-03-13T22:05:02,576 copying rna_tools/Seq.py -> build/lib/rna_tools 2026-03-13T22:05:02,579 copying rna_tools/stats.py -> build/lib/rna_tools 2026-03-13T22:05:02,580 copying rna_tools/rna_tools_test_all.py -> build/lib/rna_tools 2026-03-13T22:05:02,582 copying rna_tools/rna_calc_fenergy.py -> build/lib/rna_tools 2026-03-13T22:05:02,584 copying rna_tools/update_readme.py -> build/lib/rna_tools 2026-03-13T22:05:02,586 copying rna_tools/rna_cif2pdb.py -> build/lib/rna_tools 2026-03-13T22:05:02,588 copying rna_tools/rna_pdb_seq.py -> build/lib/rna_tools 2026-03-13T22:05:02,591 copying rna_tools/rna_pdb_fetch_header.py -> build/lib/rna_tools 2026-03-13T22:05:02,592 copying rna_tools/rna_pdb_inspect.py -> build/lib/rna_tools 2026-03-13T22:05:02,595 copying rna_tools/__init__.py -> build/lib/rna_tools 2026-03-13T22:05:02,598 creating build/lib/tests 2026-03-13T22:05:02,599 copying tests/test_module.py -> build/lib/tests 2026-03-13T22:05:02,602 copying tests/__init__.py -> build/lib/tests 2026-03-13T22:05:02,605 creating build/lib/rna_tools/tools 2026-03-13T22:05:02,606 copying rna_tools/tools/__init__.py -> build/lib/rna_tools/tools 2026-03-13T22:05:02,608 creating build/lib/rna_tools/tools/md 2026-03-13T22:05:02,609 copying rna_tools/tools/md/test.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,611 copying rna_tools/tools/md/rna_traj_nohetm.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,612 copying rna_tools/tools/md/rna_traj_range.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,614 copying rna_tools/tools/md/rna_gromacs_ready.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,615 copying rna_tools/tools/md/rna_traj_n.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,617 copying rna_tools/tools/md/rnakb_utils.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,620 copying rna_tools/tools/md/rna_get_energy.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,621 copying rna_tools/tools/md/rna_md.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,623 copying rna_tools/tools/md/rna_minimize.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,625 copying rna_tools/tools/md/__init__.py -> build/lib/rna_tools/tools/md 2026-03-13T22:05:02,627 creating build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,628 copying rna_tools/tools/mq/rna_mq_wx_collect.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,630 copying rna_tools/tools/mq/rna_mq_plot.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,631 copying rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,634 copying rna_tools/tools/mq/rna_mq_collect.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,636 copying rna_tools/tools/mq/rna_mq_score.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,639 copying rna_tools/tools/mq/rna_mq_exp.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,640 copying rna_tools/tools/mq/__init__.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:02,642 creating build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,643 copying rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,645 copying rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,647 copying rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,649 copying rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,651 copying rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,653 copying rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,655 copying rna_tools/tools/simrna_trajectory/__init__.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,656 copying rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,658 copying rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:02,661 creating build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,662 copying rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,664 copying rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,666 copying rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,668 copying rna_tools/tools/rna_filter/rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,671 copying rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,673 copying rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,674 copying rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,676 copying rna_tools/tools/rna_filter/rna_ec2x.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,678 copying rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,680 copying rna_tools/tools/rna_filter/rna_get_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,683 copying rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,685 copying rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,687 copying rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,689 copying rna_tools/tools/rna_filter/pymol_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,690 copying rna_tools/tools/rna_filter/rna_get_distances.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,693 copying rna_tools/tools/rna_filter/__init__.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,695 copying rna_tools/tools/rna_filter/test_rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:02,698 creating build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,699 copying rna_tools/tools/rna_rosetta/test.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,701 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,703 copying rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,705 copying rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,707 copying rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,709 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,711 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,714 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,716 copying rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,718 copying rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,721 copying rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,723 copying rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,725 copying rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,727 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,729 copying rna_tools/tools/rna_rosetta/__init__.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:02,732 creating build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:02,733 copying rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:02,736 copying rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:02,738 copying rna_tools/tools/rna_calc_inf/__init__.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:02,741 creating build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:05:02,742 copying rna_tools/tools/ClashCalc/ClashCalc.py -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:05:02,744 copying rna_tools/tools/ClashCalc/__init__.py -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:05:02,747 creating build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:05:02,748 copying rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:05:02,750 copying rna_tools/tools/pymol_drawing/__init__.py -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:05:02,752 creating build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:02,754 copying rna_tools/tools/diffpdb/diffpdb.py -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:02,756 copying rna_tools/tools/diffpdb/__init__.py -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:02,759 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:02,761 copying rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:02,764 copying rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:02,766 creating build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:02,768 copying rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:02,770 copying rna_tools/tools/rna_prediction_significance/__init__.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:02,772 creating build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:02,773 copying rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:02,775 copying rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:02,777 creating build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,778 copying rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,780 copying rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,782 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,785 copying rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,787 copying rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,793 copying rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,795 copying rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,798 copying rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,801 copying rna_tools/tools/PyMOL4RNA/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:02,803 creating build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:02,804 copying rna_tools/tools/clarna_app/test.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:02,806 copying rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:02,808 copying rna_tools/tools/clarna_app/rna_clarna_app.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:02,810 copying rna_tools/tools/clarna_app/__init__.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:02,813 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:02,814 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:02,818 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:02,822 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:02,823 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:02,827 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:02,830 creating build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:02,832 copying rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:02,835 copying rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:02,838 creating build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,839 copying rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,842 copying rna_tools/tools/pdb_formatix/rebuilder.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,843 copying rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,846 copying rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,848 copying rna_tools/tools/pdb_formatix/PDBFile.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,850 copying rna_tools/tools/pdb_formatix/__init__.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:02,852 creating build/lib/rna_tools/tools/rna_bp 2026-03-13T22:05:02,853 copying rna_tools/tools/rna_bp/base_pair.py -> build/lib/rna_tools/tools/rna_bp 2026-03-13T22:05:02,855 copying rna_tools/tools/rna_bp/__init__.py -> build/lib/rna_tools/tools/rna_bp 2026-03-13T22:05:02,857 creating build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:02,858 copying rna_tools/tools/mini_moderna3/__init__.py -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:02,861 creating build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:02,861 copying rna_tools/tools/cluster_load/cluster_load.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:02,864 copying rna_tools/tools/cluster_load/cluster_mini_free.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:02,865 copying rna_tools/tools/cluster_load/__init__.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:02,867 creating build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:02,868 copying rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:02,871 copying rna_tools/tools/clarna_play/rna_clarna_run.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:02,875 copying rna_tools/tools/clarna_play/PDBSeq.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:02,878 copying rna_tools/tools/clarna_play/__init__.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:02,880 creating build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,881 copying rna_tools/tools/webserver-engine/checker.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,884 copying rna_tools/tools/webserver-engine/manage.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,886 copying rna_tools/tools/webserver-engine/daemon.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,888 copying rna_tools/tools/webserver-engine/sendmail.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,890 copying rna_tools/tools/webserver-engine/cleanup.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,892 copying rna_tools/tools/webserver-engine/wsgi.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,894 copying rna_tools/tools/webserver-engine/__init__.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:02,896 creating build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:05:02,897 copying rna_tools/tools/rna_refinement/rna_refinement.py -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:05:02,900 copying rna_tools/tools/rna_refinement/__init__.py -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:05:02,902 creating build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:05:02,903 copying rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:05:02,905 copying rna_tools/tools/rna_x3dna/__init__.py -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:05:02,908 creating build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,909 copying rna_tools/tools/rna_alignment/test.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,910 copying rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,912 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,914 copying rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,915 copying rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,917 copying rna_tools/tools/rna_alignment/rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,920 copying rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,922 copying rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,924 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,925 copying rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,928 copying rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,930 copying rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,932 copying rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,934 copying rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,936 copying rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,938 copying rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,940 copying rna_tools/tools/rna_alignment/__init__.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,942 copying rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:02,945 creating build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,946 copying rna_tools/tools/plotting/rna_plot_dendogram.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,948 copying rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,950 copying rna_tools/tools/plotting/rna_plot_heatmap.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,952 copying rna_tools/tools/plotting/rna_plot_hist.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,954 copying rna_tools/tools/plotting/__init__.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,956 copying rna_tools/tools/plotting/rna_plot_density.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:02,959 creating build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:02,960 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:02,962 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:02,963 copying rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:02,965 creating build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:02,966 copying rna_tools/tools/clanstix/rna_clanstix.py -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:02,969 copying rna_tools/tools/clanstix/__init__.py -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:02,971 creating build/lib/rna_tools/tools/extra_functions 2026-03-13T22:05:02,972 copying rna_tools/tools/extra_functions/gen_numbering.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:05:02,973 copying rna_tools/tools/extra_functions/__init__.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:05:02,975 copying rna_tools/tools/extra_functions/select_fragment.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:05:02,977 creating build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:02,978 copying rna_tools/tools/rna_helix_vis/__init__.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:02,979 copying rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:02,982 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:02,982 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:03,197 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:03,199 copying rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:03,201 creating build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,202 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,204 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,207 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,209 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,211 copying rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,214 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,215 copying rna_tools/tools/rna_calc_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:03,217 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:03,218 copying rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:03,220 copying rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:03,222 copying rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:03,224 copying rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:03,226 creating build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,227 copying rna_tools/tools/misc/rna_dict2fasta.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,229 copying rna_tools/tools/misc/rna_add_chain.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,231 copying rna_tools/tools/misc/translate.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,233 copying rna_tools/tools/misc/rna_tools_demo.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,235 copying rna_tools/tools/misc/rna_topdb.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,237 copying rna_tools/tools/misc/reverse.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,238 copying rna_tools/tools/misc/rna_tools_which.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,240 copying rna_tools/tools/misc/rna_ok_mail.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,242 copying rna_tools/tools/misc/rna_remote_run.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,244 copying rna_tools/tools/misc/__init__.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,245 copying rna_tools/tools/misc/rna_test_cuda.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:03,247 creating build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,248 copying rna_tools/tools/mq/RASP/test.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,249 copying rna_tools/tools/mq/RASP/RASP.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,251 copying rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,253 copying rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,254 copying rna_tools/tools/mq/RASP/__init__.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:03,256 creating build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:03,257 copying rna_tools/tools/mq/eSCORE/eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:03,259 copying rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:03,261 copying rna_tools/tools/mq/eSCORE/__init__.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:03,263 creating build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:03,263 copying rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:03,266 copying rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:03,268 copying rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:03,270 creating build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:03,270 copying rna_tools/tools/mq/Dfire/Dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:03,273 copying rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:03,275 copying rna_tools/tools/mq/Dfire/__init__.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:03,277 creating build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:03,278 copying rna_tools/tools/mq/ClashScore/ClashScore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:03,280 copying rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:03,282 copying rna_tools/tools/mq/ClashScore/__init__.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:03,283 creating build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:03,284 copying rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:03,287 copying rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:03,289 copying rna_tools/tools/mq/FARFAR2/__init__.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:03,291 creating build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:03,292 copying rna_tools/tools/mq/RNAscore/RNAscore.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:03,294 copying rna_tools/tools/mq/RNAscore/__init__.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:03,297 creating build/lib/rna_tools/tools/mq/lib 2026-03-13T22:05:03,299 copying rna_tools/tools/mq/lib/__init__.py -> build/lib/rna_tools/tools/mq/lib 2026-03-13T22:05:03,302 creating build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:03,303 copying rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:03,307 copying rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:03,310 copying rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:03,529 creating build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:05:03,530 copying rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:05:03,534 copying rna_tools/tools/mq/FARNA/FARNA.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:05:03,538 copying rna_tools/tools/mq/FARNA/__init__.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:05:03,541 creating build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:03,542 copying rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:03,545 copying rna_tools/tools/mq/rsRNASP/__init__.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:03,548 copying rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:03,552 creating build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:03,553 copying rna_tools/tools/mq/SimRNA/SimRNA.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:03,556 copying rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:03,559 copying rna_tools/tools/mq/SimRNA/__init__.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:03,562 creating build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:03,563 copying rna_tools/tools/mq/QRNAS/QRNAS.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:03,567 copying rna_tools/tools/mq/QRNAS/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:03,570 creating build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:03,572 copying rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:03,575 copying rna_tools/tools/mq/RNAkb/RNAkb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:03,578 copying rna_tools/tools/mq/RNAkb/__init__.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:03,581 creating build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:03,582 copying rna_tools/tools/mq/RASP/test/test.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:03,586 copying rna_tools/tools/mq/RASP/test/__init__.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:03,590 creating build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:03,591 copying rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:03,595 copying rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:03,598 creating build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:03,599 copying rna_tools/tools/mq/lib/timex/timex.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:03,602 copying rna_tools/tools/mq/lib/timex/__init__.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:03,605 creating build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:03,607 copying rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:03,610 copying rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:03,613 copying rna_tools/tools/mq/lib/wrappers/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:03,616 creating build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:03,617 copying rna_tools/tools/mq/lib/wrappers/test/test.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:03,620 copying rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:03,623 creating build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:03,625 copying rna_tools/tools/mq/QRNAS/test/test.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:03,628 copying rna_tools/tools/mq/QRNAS/test/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:03,631 creating build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,633 copying rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,636 copying rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,639 copying rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,642 copying rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,644 copying rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,646 copying rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,648 copying rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:03,650 creating build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:03,651 copying rna_tools/tools/pdb_formatix/test/test.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:03,653 copying rna_tools/tools/pdb_formatix/test/__init__.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:03,655 creating build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,656 copying rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,659 copying rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,661 copying rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,664 copying rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,665 copying rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,667 copying rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,669 copying rna_tools/tools/mini_moderna3/moderna/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,672 copying rna_tools/tools/mini_moderna3/moderna/Template.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,674 copying rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,676 copying rna_tools/tools/mini_moderna3/moderna/_version.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,678 copying rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,680 copying rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,682 copying rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,685 copying rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,687 copying rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,690 copying rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,692 copying rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,694 copying rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,696 copying rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:03,699 creating build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,700 copying rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,702 copying rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,704 copying rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,706 copying rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,708 copying rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:03,709 creating build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,710 copying rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,712 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,714 copying rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,716 copying rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,719 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,721 copying rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:03,723 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,724 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,726 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,728 copying rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,730 copying rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,732 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,735 copying rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,737 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,739 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,741 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,744 copying rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,746 copying rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,748 copying rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,750 copying rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,752 copying rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,754 copying rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,756 copying rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,757 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:03,760 creating build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:03,761 copying rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:03,763 copying rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:03,765 creating build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,766 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,768 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,770 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,772 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,774 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:03,776 creating build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,777 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,779 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,781 copying rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,783 copying rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,785 copying rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,787 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:03,789 creating build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:03,790 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:03,792 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:03,794 copying rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:03,796 copying rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:03,798 creating build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,799 copying rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,801 copying rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,803 copying rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,805 copying rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,807 copying rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,809 copying rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,811 copying rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:03,813 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,815 copying rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,817 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,819 copying rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,822 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,824 copying rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,826 copying rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,829 copying rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,831 copying rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:03,833 creating build/lib/rna_tools/tools/clarna_play/lib 2026-03-13T22:05:03,834 copying rna_tools/tools/clarna_play/lib/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib 2026-03-13T22:05:03,836 creating build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:03,836 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:03,839 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:03,842 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:03,843 creating build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:05:03,844 copying rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:05:03,846 creating build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:03,847 copying rna_tools/tools/webserver-engine/app/views.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:03,850 copying rna_tools/tools/webserver-engine/app/models.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:03,852 copying rna_tools/tools/webserver-engine/app/__init__.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:03,854 copying rna_tools/tools/webserver-engine/app/admin.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:03,856 creating build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:03,857 copying rna_tools/tools/webserver-engine/web/urls.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:03,859 copying rna_tools/tools/webserver-engine/web/settings.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:03,861 copying rna_tools/tools/webserver-engine/web/wsgi.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:03,863 copying rna_tools/tools/webserver-engine/web/__init__.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:03,865 creating build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,866 copying rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,868 copying rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,870 copying rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,872 copying rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,874 copying rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,877 copying rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,879 copying rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,880 copying rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,882 copying rna_tools/tools/rna_alignment/utils/__init__.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:03,884 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:05:03,885 copying rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:05:03,887 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:03,888 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:03,890 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:03,892 running egg_info 2026-03-13T22:05:03,898 writing rna_tools.egg-info/PKG-INFO 2026-03-13T22:05:03,902 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-03-13T22:05:03,903 writing requirements to rna_tools.egg-info/requires.txt 2026-03-13T22:05:03,904 writing top-level names to rna_tools.egg-info/top_level.txt 2026-03-13T22:05:03,978 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:05:04,016 reading manifest template 'MANIFEST.in' 2026-03-13T22:05:04,700 adding license file 'LICENSE' 2026-03-13T22:05:04,785 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:05:04,807 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.data' is absent from the `packages` configuration. 2026-03-13T22:05:04,808 !! 2026-03-13T22:05:04,809 ******************************************************************************** 2026-03-13T22:05:04,810 ############################ 2026-03-13T22:05:04,811 # Package would be ignored # 2026-03-13T22:05:04,811 ############################ 2026-03-13T22:05:04,812 Python recognizes 'rna_tools.data' as an importable package[^1], 2026-03-13T22:05:04,812 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,813 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,814 package, please make sure that 'rna_tools.data' is explicitly added 2026-03-13T22:05:04,815 to the `packages` configuration field. 2026-03-13T22:05:04,816 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,816 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,817 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,818 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,821 If you don't want 'rna_tools.data' to be distributed and are 2026-03-13T22:05:04,822 already explicitly excluding 'rna_tools.data' via 2026-03-13T22:05:04,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,823 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,824 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,826 even if it does not contain any `.py` files. 2026-03-13T22:05:04,826 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,827 directory, all directories are treated like packages. 2026-03-13T22:05:04,827 ******************************************************************************** 2026-03-13T22:05:04,828 !! 2026-03-13T22:05:04,828 check.warn(importable) 2026-03-13T22:05:04,829 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests' is absent from the `packages` configuration. 2026-03-13T22:05:04,829 !! 2026-03-13T22:05:04,830 ******************************************************************************** 2026-03-13T22:05:04,830 ############################ 2026-03-13T22:05:04,831 # Package would be ignored # 2026-03-13T22:05:04,831 ############################ 2026-03-13T22:05:04,832 Python recognizes 'rna_tools.tests' as an importable package[^1], 2026-03-13T22:05:04,832 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,833 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,834 package, please make sure that 'rna_tools.tests' is explicitly added 2026-03-13T22:05:04,834 to the `packages` configuration field. 2026-03-13T22:05:04,835 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,835 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,836 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,837 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,839 If you don't want 'rna_tools.tests' to be distributed and are 2026-03-13T22:05:04,839 already explicitly excluding 'rna_tools.tests' via 2026-03-13T22:05:04,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,840 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,840 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,841 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,844 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,844 even if it does not contain any `.py` files. 2026-03-13T22:05:04,845 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,845 directory, all directories are treated like packages. 2026-03-13T22:05:04,846 ******************************************************************************** 2026-03-13T22:05:04,847 !! 2026-03-13T22:05:04,847 check.warn(importable) 2026-03-13T22:05:04,848 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module' is absent from the `packages` configuration. 2026-03-13T22:05:04,848 !! 2026-03-13T22:05:04,849 ******************************************************************************** 2026-03-13T22:05:04,849 ############################ 2026-03-13T22:05:04,850 # Package would be ignored # 2026-03-13T22:05:04,850 ############################ 2026-03-13T22:05:04,850 Python recognizes 'rna_tools.tests.test_import_module' as an importable package[^1], 2026-03-13T22:05:04,851 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,851 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,852 package, please make sure that 'rna_tools.tests.test_import_module' is explicitly added 2026-03-13T22:05:04,852 to the `packages` configuration field. 2026-03-13T22:05:04,853 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,853 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,853 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,854 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,855 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,856 If you don't want 'rna_tools.tests.test_import_module' to be distributed and are 2026-03-13T22:05:04,856 already explicitly excluding 'rna_tools.tests.test_import_module' via 2026-03-13T22:05:04,857 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,857 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,858 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,859 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,860 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,861 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,861 even if it does not contain any `.py` files. 2026-03-13T22:05:04,862 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,862 directory, all directories are treated like packages. 2026-03-13T22:05:04,863 ******************************************************************************** 2026-03-13T22:05:04,864 !! 2026-03-13T22:05:04,864 check.warn(importable) 2026-03-13T22:05:04,865 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:04,865 !! 2026-03-13T22:05:04,866 ******************************************************************************** 2026-03-13T22:05:04,866 ############################ 2026-03-13T22:05:04,867 # Package would be ignored # 2026-03-13T22:05:04,867 ############################ 2026-03-13T22:05:04,868 Python recognizes 'rna_tools.tests.test_import_module.test_data' as an importable package[^1], 2026-03-13T22:05:04,868 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,870 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,870 package, please make sure that 'rna_tools.tests.test_import_module.test_data' is explicitly added 2026-03-13T22:05:04,871 to the `packages` configuration field. 2026-03-13T22:05:04,872 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,873 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,874 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,875 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,876 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,877 If you don't want 'rna_tools.tests.test_import_module.test_data' to be distributed and are 2026-03-13T22:05:04,878 already explicitly excluding 'rna_tools.tests.test_import_module.test_data' via 2026-03-13T22:05:04,878 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,878 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,879 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,879 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,880 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,881 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,881 even if it does not contain any `.py` files. 2026-03-13T22:05:04,882 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,882 directory, all directories are treated like packages. 2026-03-13T22:05:04,883 ******************************************************************************** 2026-03-13T22:05:04,883 !! 2026-03-13T22:05:04,884 check.warn(importable) 2026-03-13T22:05:04,884 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.ClashCalc.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:04,885 !! 2026-03-13T22:05:04,886 ******************************************************************************** 2026-03-13T22:05:04,886 ############################ 2026-03-13T22:05:04,886 # Package would be ignored # 2026-03-13T22:05:04,887 ############################ 2026-03-13T22:05:04,887 Python recognizes 'rna_tools.tools.ClashCalc.test_data' as an importable package[^1], 2026-03-13T22:05:04,888 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,889 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,889 package, please make sure that 'rna_tools.tools.ClashCalc.test_data' is explicitly added 2026-03-13T22:05:04,890 to the `packages` configuration field. 2026-03-13T22:05:04,891 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,891 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,892 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,892 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,893 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,894 If you don't want 'rna_tools.tools.ClashCalc.test_data' to be distributed and are 2026-03-13T22:05:04,895 already explicitly excluding 'rna_tools.tools.ClashCalc.test_data' via 2026-03-13T22:05:04,895 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,896 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,896 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,897 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,898 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,900 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,900 even if it does not contain any `.py` files. 2026-03-13T22:05:04,900 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,901 directory, all directories are treated like packages. 2026-03-13T22:05:04,901 ******************************************************************************** 2026-03-13T22:05:04,902 !! 2026-03-13T22:05:04,902 check.warn(importable) 2026-03-13T22:05:04,903 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.doc' is absent from the `packages` configuration. 2026-03-13T22:05:04,903 !! 2026-03-13T22:05:04,904 ******************************************************************************** 2026-03-13T22:05:04,905 ############################ 2026-03-13T22:05:04,905 # Package would be ignored # 2026-03-13T22:05:04,905 ############################ 2026-03-13T22:05:04,906 Python recognizes 'rna_tools.tools.PyMOL4RNA.doc' as an importable package[^1], 2026-03-13T22:05:04,906 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,907 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,907 package, please make sure that 'rna_tools.tools.PyMOL4RNA.doc' is explicitly added 2026-03-13T22:05:04,908 to the `packages` configuration field. 2026-03-13T22:05:04,909 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,909 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,909 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,910 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,911 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,912 If you don't want 'rna_tools.tools.PyMOL4RNA.doc' to be distributed and are 2026-03-13T22:05:04,913 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.doc' via 2026-03-13T22:05:04,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,913 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,914 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,915 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,918 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,918 even if it does not contain any `.py` files. 2026-03-13T22:05:04,919 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,920 directory, all directories are treated like packages. 2026-03-13T22:05:04,920 ******************************************************************************** 2026-03-13T22:05:04,921 !! 2026-03-13T22:05:04,922 check.warn(importable) 2026-03-13T22:05:04,922 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:04,923 !! 2026-03-13T22:05:04,924 ******************************************************************************** 2026-03-13T22:05:04,924 ############################ 2026-03-13T22:05:04,925 # Package would be ignored # 2026-03-13T22:05:04,925 ############################ 2026-03-13T22:05:04,926 Python recognizes 'rna_tools.tools.PyMOL4RNA.test_data' as an importable package[^1], 2026-03-13T22:05:04,926 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,927 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,927 package, please make sure that 'rna_tools.tools.PyMOL4RNA.test_data' is explicitly added 2026-03-13T22:05:04,928 to the `packages` configuration field. 2026-03-13T22:05:04,928 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,929 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,929 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,930 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,930 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,931 If you don't want 'rna_tools.tools.PyMOL4RNA.test_data' to be distributed and are 2026-03-13T22:05:04,932 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.test_data' via 2026-03-13T22:05:04,932 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,932 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,933 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,934 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,934 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,936 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,936 even if it does not contain any `.py` files. 2026-03-13T22:05:04,937 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,937 directory, all directories are treated like packages. 2026-03-13T22:05:04,938 ******************************************************************************** 2026-03-13T22:05:04,938 !! 2026-03-13T22:05:04,939 check.warn(importable) 2026-03-13T22:05:04,939 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.doc' is absent from the `packages` configuration. 2026-03-13T22:05:04,940 !! 2026-03-13T22:05:04,941 ******************************************************************************** 2026-03-13T22:05:04,941 ############################ 2026-03-13T22:05:04,942 # Package would be ignored # 2026-03-13T22:05:04,942 ############################ 2026-03-13T22:05:04,943 Python recognizes 'rna_tools.tools.clanstix.doc' as an importable package[^1], 2026-03-13T22:05:04,943 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,944 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,945 package, please make sure that 'rna_tools.tools.clanstix.doc' is explicitly added 2026-03-13T22:05:04,945 to the `packages` configuration field. 2026-03-13T22:05:04,946 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,947 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,948 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,949 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,950 If you don't want 'rna_tools.tools.clanstix.doc' to be distributed and are 2026-03-13T22:05:04,950 already explicitly excluding 'rna_tools.tools.clanstix.doc' via 2026-03-13T22:05:04,951 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,951 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,952 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,952 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,953 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,954 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,954 even if it does not contain any `.py` files. 2026-03-13T22:05:04,955 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,955 directory, all directories are treated like packages. 2026-03-13T22:05:04,955 ******************************************************************************** 2026-03-13T22:05:04,956 !! 2026-03-13T22:05:04,957 check.warn(importable) 2026-03-13T22:05:04,957 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:04,957 !! 2026-03-13T22:05:04,958 ******************************************************************************** 2026-03-13T22:05:04,958 ############################ 2026-03-13T22:05:04,959 # Package would be ignored # 2026-03-13T22:05:04,959 ############################ 2026-03-13T22:05:04,960 Python recognizes 'rna_tools.tools.clanstix.test_data' as an importable package[^1], 2026-03-13T22:05:04,960 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,961 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,962 package, please make sure that 'rna_tools.tools.clanstix.test_data' is explicitly added 2026-03-13T22:05:04,963 to the `packages` configuration field. 2026-03-13T22:05:04,963 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,964 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,964 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,965 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,966 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,967 If you don't want 'rna_tools.tools.clanstix.test_data' to be distributed and are 2026-03-13T22:05:04,968 already explicitly excluding 'rna_tools.tools.clanstix.test_data' via 2026-03-13T22:05:04,968 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,972 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,973 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,974 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,976 even if it does not contain any `.py` files. 2026-03-13T22:05:04,977 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,977 directory, all directories are treated like packages. 2026-03-13T22:05:04,978 ******************************************************************************** 2026-03-13T22:05:04,979 !! 2026-03-13T22:05:04,979 check.warn(importable) 2026-03-13T22:05:04,980 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data.rp17_del' is absent from the `packages` configuration. 2026-03-13T22:05:04,980 !! 2026-03-13T22:05:04,981 ******************************************************************************** 2026-03-13T22:05:04,981 ############################ 2026-03-13T22:05:04,982 # Package would be ignored # 2026-03-13T22:05:04,982 ############################ 2026-03-13T22:05:04,982 Python recognizes 'rna_tools.tools.clanstix.test_data.rp17_del' as an importable package[^1], 2026-03-13T22:05:04,983 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:04,983 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:04,984 package, please make sure that 'rna_tools.tools.clanstix.test_data.rp17_del' is explicitly added 2026-03-13T22:05:04,984 to the `packages` configuration field. 2026-03-13T22:05:04,985 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:04,985 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:04,986 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:04,986 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:04,987 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:04,988 If you don't want 'rna_tools.tools.clanstix.test_data.rp17_del' to be distributed and are 2026-03-13T22:05:04,989 already explicitly excluding 'rna_tools.tools.clanstix.test_data.rp17_del' via 2026-03-13T22:05:04,989 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:04,990 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:04,990 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:04,991 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:04,992 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:04,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:04,994 even if it does not contain any `.py` files. 2026-03-13T22:05:04,994 On the other hand, currently there is no concept of package data 2026-03-13T22:05:04,995 directory, all directories are treated like packages. 2026-03-13T22:05:04,995 ******************************************************************************** 2026-03-13T22:05:04,997 !! 2026-03-13T22:05:04,997 check.warn(importable) 2026-03-13T22:05:04,997 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_app.data' is absent from the `packages` configuration. 2026-03-13T22:05:04,998 !! 2026-03-13T22:05:04,999 ******************************************************************************** 2026-03-13T22:05:05,000 ############################ 2026-03-13T22:05:05,000 # Package would be ignored # 2026-03-13T22:05:05,001 ############################ 2026-03-13T22:05:05,001 Python recognizes 'rna_tools.tools.clarna_app.data' as an importable package[^1], 2026-03-13T22:05:05,002 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,003 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,003 package, please make sure that 'rna_tools.tools.clarna_app.data' is explicitly added 2026-03-13T22:05:05,004 to the `packages` configuration field. 2026-03-13T22:05:05,005 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,005 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,006 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,006 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,007 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,008 If you don't want 'rna_tools.tools.clarna_app.data' to be distributed and are 2026-03-13T22:05:05,008 already explicitly excluding 'rna_tools.tools.clarna_app.data' via 2026-03-13T22:05:05,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,009 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,009 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,010 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,010 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,011 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,012 even if it does not contain any `.py` files. 2026-03-13T22:05:05,012 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,013 directory, all directories are treated like packages. 2026-03-13T22:05:05,013 ******************************************************************************** 2026-03-13T22:05:05,014 !! 2026-03-13T22:05:05,014 check.warn(importable) 2026-03-13T22:05:05,015 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is absent from the `packages` configuration. 2026-03-13T22:05:05,015 !! 2026-03-13T22:05:05,016 ******************************************************************************** 2026-03-13T22:05:05,017 ############################ 2026-03-13T22:05:05,017 # Package would be ignored # 2026-03-13T22:05:05,018 ############################ 2026-03-13T22:05:05,018 Python recognizes 'rna_tools.tools.clarna_play.ClaRNAlib.lib' as an importable package[^1], 2026-03-13T22:05:05,019 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,020 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,020 package, please make sure that 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is explicitly added 2026-03-13T22:05:05,021 to the `packages` configuration field. 2026-03-13T22:05:05,021 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,022 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,023 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,025 If you don't want 'rna_tools.tools.clarna_play.ClaRNAlib.lib' to be distributed and are 2026-03-13T22:05:05,025 already explicitly excluding 'rna_tools.tools.clarna_play.ClaRNAlib.lib' via 2026-03-13T22:05:05,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,026 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,027 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,028 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,029 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,030 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,030 even if it does not contain any `.py` files. 2026-03-13T22:05:05,031 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,031 directory, all directories are treated like packages. 2026-03-13T22:05:05,031 ******************************************************************************** 2026-03-13T22:05:05,032 !! 2026-03-13T22:05:05,032 check.warn(importable) 2026-03-13T22:05:05,033 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.docs' is absent from the `packages` configuration. 2026-03-13T22:05:05,033 !! 2026-03-13T22:05:05,034 ******************************************************************************** 2026-03-13T22:05:05,034 ############################ 2026-03-13T22:05:05,035 # Package would be ignored # 2026-03-13T22:05:05,035 ############################ 2026-03-13T22:05:05,035 Python recognizes 'rna_tools.tools.clarna_play.docs' as an importable package[^1], 2026-03-13T22:05:05,036 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,037 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,037 package, please make sure that 'rna_tools.tools.clarna_play.docs' is explicitly added 2026-03-13T22:05:05,038 to the `packages` configuration field. 2026-03-13T22:05:05,039 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,039 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,048 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,049 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,050 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,051 If you don't want 'rna_tools.tools.clarna_play.docs' to be distributed and are 2026-03-13T22:05:05,052 already explicitly excluding 'rna_tools.tools.clarna_play.docs' via 2026-03-13T22:05:05,052 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,053 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,053 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,055 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,056 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,057 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,058 even if it does not contain any `.py` files. 2026-03-13T22:05:05,058 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,059 directory, all directories are treated like packages. 2026-03-13T22:05:05,059 ******************************************************************************** 2026-03-13T22:05:05,060 !! 2026-03-13T22:05:05,061 check.warn(importable) 2026-03-13T22:05:05,062 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is absent from the `packages` configuration. 2026-03-13T22:05:05,062 !! 2026-03-13T22:05:05,063 ******************************************************************************** 2026-03-13T22:05:05,064 ############################ 2026-03-13T22:05:05,065 # Package would be ignored # 2026-03-13T22:05:05,065 ############################ 2026-03-13T22:05:05,066 Python recognizes 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' as an importable package[^1], 2026-03-13T22:05:05,066 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,067 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,068 package, please make sure that 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is explicitly added 2026-03-13T22:05:05,068 to the `packages` configuration field. 2026-03-13T22:05:05,069 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,070 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,070 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,071 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,072 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,073 If you don't want 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' to be distributed and are 2026-03-13T22:05:05,073 already explicitly excluding 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' via 2026-03-13T22:05:05,074 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,074 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,075 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,075 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,076 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,077 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,078 even if it does not contain any `.py` files. 2026-03-13T22:05:05,078 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,079 directory, all directories are treated like packages. 2026-03-13T22:05:05,079 ******************************************************************************** 2026-03-13T22:05:05,080 !! 2026-03-13T22:05:05,081 check.warn(importable) 2026-03-13T22:05:05,081 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,082 !! 2026-03-13T22:05:05,083 ******************************************************************************** 2026-03-13T22:05:05,083 ############################ 2026-03-13T22:05:05,084 # Package would be ignored # 2026-03-13T22:05:05,084 ############################ 2026-03-13T22:05:05,085 Python recognizes 'rna_tools.tools.clarna_play.test_data' as an importable package[^1], 2026-03-13T22:05:05,085 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,086 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,086 package, please make sure that 'rna_tools.tools.clarna_play.test_data' is explicitly added 2026-03-13T22:05:05,087 to the `packages` configuration field. 2026-03-13T22:05:05,088 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,089 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,089 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,090 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,092 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,092 If you don't want 'rna_tools.tools.clarna_play.test_data' to be distributed and are 2026-03-13T22:05:05,093 already explicitly excluding 'rna_tools.tools.clarna_play.test_data' via 2026-03-13T22:05:05,093 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,094 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,094 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,095 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,096 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,097 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,097 even if it does not contain any `.py` files. 2026-03-13T22:05:05,098 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,098 directory, all directories are treated like packages. 2026-03-13T22:05:05,099 ******************************************************************************** 2026-03-13T22:05:05,099 !! 2026-03-13T22:05:05,100 check.warn(importable) 2026-03-13T22:05:05,100 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:05,101 !! 2026-03-13T22:05:05,102 ******************************************************************************** 2026-03-13T22:05:05,102 ############################ 2026-03-13T22:05:05,102 # Package would be ignored # 2026-03-13T22:05:05,103 ############################ 2026-03-13T22:05:05,103 Python recognizes 'rna_tools.tools.clarna_play.test_output' as an importable package[^1], 2026-03-13T22:05:05,104 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,105 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,105 package, please make sure that 'rna_tools.tools.clarna_play.test_output' is explicitly added 2026-03-13T22:05:05,106 to the `packages` configuration field. 2026-03-13T22:05:05,107 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,108 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,108 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,109 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,110 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,111 If you don't want 'rna_tools.tools.clarna_play.test_output' to be distributed and are 2026-03-13T22:05:05,112 already explicitly excluding 'rna_tools.tools.clarna_play.test_output' via 2026-03-13T22:05:05,112 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,113 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,113 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,115 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,116 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,118 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,119 even if it does not contain any `.py` files. 2026-03-13T22:05:05,120 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,120 directory, all directories are treated like packages. 2026-03-13T22:05:05,121 ******************************************************************************** 2026-03-13T22:05:05,121 !! 2026-03-13T22:05:05,122 check.warn(importable) 2026-03-13T22:05:05,122 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.tests' is absent from the `packages` configuration. 2026-03-13T22:05:05,122 !! 2026-03-13T22:05:05,123 ******************************************************************************** 2026-03-13T22:05:05,123 ############################ 2026-03-13T22:05:05,124 # Package would be ignored # 2026-03-13T22:05:05,124 ############################ 2026-03-13T22:05:05,125 Python recognizes 'rna_tools.tools.clarna_play.tests' as an importable package[^1], 2026-03-13T22:05:05,125 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,126 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,126 package, please make sure that 'rna_tools.tools.clarna_play.tests' is explicitly added 2026-03-13T22:05:05,127 to the `packages` configuration field. 2026-03-13T22:05:05,128 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,128 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,129 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,130 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,131 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,132 If you don't want 'rna_tools.tools.clarna_play.tests' to be distributed and are 2026-03-13T22:05:05,133 already explicitly excluding 'rna_tools.tools.clarna_play.tests' via 2026-03-13T22:05:05,133 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,134 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,135 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,136 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,138 even if it does not contain any `.py` files. 2026-03-13T22:05:05,139 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,139 directory, all directories are treated like packages. 2026-03-13T22:05:05,140 ******************************************************************************** 2026-03-13T22:05:05,141 !! 2026-03-13T22:05:05,141 check.warn(importable) 2026-03-13T22:05:05,142 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df' is absent from the `packages` configuration. 2026-03-13T22:05:05,142 !! 2026-03-13T22:05:05,143 ******************************************************************************** 2026-03-13T22:05:05,144 ############################ 2026-03-13T22:05:05,144 # Package would be ignored # 2026-03-13T22:05:05,145 ############################ 2026-03-13T22:05:05,145 Python recognizes 'rna_tools.tools.df' as an importable package[^1], 2026-03-13T22:05:05,146 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,147 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,147 package, please make sure that 'rna_tools.tools.df' is explicitly added 2026-03-13T22:05:05,148 to the `packages` configuration field. 2026-03-13T22:05:05,149 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,149 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,150 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,151 If you don't want 'rna_tools.tools.df' to be distributed and are 2026-03-13T22:05:05,152 already explicitly excluding 'rna_tools.tools.df' via 2026-03-13T22:05:05,152 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,152 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,153 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,153 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,154 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,155 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,156 even if it does not contain any `.py` files. 2026-03-13T22:05:05,156 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,156 directory, all directories are treated like packages. 2026-03-13T22:05:05,157 ******************************************************************************** 2026-03-13T22:05:05,158 !! 2026-03-13T22:05:05,159 check.warn(importable) 2026-03-13T22:05:05,159 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,159 !! 2026-03-13T22:05:05,160 ******************************************************************************** 2026-03-13T22:05:05,161 ############################ 2026-03-13T22:05:05,161 # Package would be ignored # 2026-03-13T22:05:05,162 ############################ 2026-03-13T22:05:05,162 Python recognizes 'rna_tools.tools.df.test_data' as an importable package[^1], 2026-03-13T22:05:05,163 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,164 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,164 package, please make sure that 'rna_tools.tools.df.test_data' is explicitly added 2026-03-13T22:05:05,164 to the `packages` configuration field. 2026-03-13T22:05:05,165 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,166 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,166 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,167 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,168 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,169 If you don't want 'rna_tools.tools.df.test_data' to be distributed and are 2026-03-13T22:05:05,169 already explicitly excluding 'rna_tools.tools.df.test_data' via 2026-03-13T22:05:05,170 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,170 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,171 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,172 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,173 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,174 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,175 even if it does not contain any `.py` files. 2026-03-13T22:05:05,175 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,175 directory, all directories are treated like packages. 2026-03-13T22:05:05,176 ******************************************************************************** 2026-03-13T22:05:05,176 !! 2026-03-13T22:05:05,177 check.warn(importable) 2026-03-13T22:05:05,177 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.doc' is absent from the `packages` configuration. 2026-03-13T22:05:05,177 !! 2026-03-13T22:05:05,178 ******************************************************************************** 2026-03-13T22:05:05,178 ############################ 2026-03-13T22:05:05,179 # Package would be ignored # 2026-03-13T22:05:05,179 ############################ 2026-03-13T22:05:05,180 Python recognizes 'rna_tools.tools.diffpdb.doc' as an importable package[^1], 2026-03-13T22:05:05,180 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,181 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,181 package, please make sure that 'rna_tools.tools.diffpdb.doc' is explicitly added 2026-03-13T22:05:05,181 to the `packages` configuration field. 2026-03-13T22:05:05,182 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,183 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,184 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,185 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,186 If you don't want 'rna_tools.tools.diffpdb.doc' to be distributed and are 2026-03-13T22:05:05,187 already explicitly excluding 'rna_tools.tools.diffpdb.doc' via 2026-03-13T22:05:05,187 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,188 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,188 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,189 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,190 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,191 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,192 even if it does not contain any `.py` files. 2026-03-13T22:05:05,192 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,193 directory, all directories are treated like packages. 2026-03-13T22:05:05,193 ******************************************************************************** 2026-03-13T22:05:05,194 !! 2026-03-13T22:05:05,195 check.warn(importable) 2026-03-13T22:05:05,195 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.lib' is absent from the `packages` configuration. 2026-03-13T22:05:05,196 !! 2026-03-13T22:05:05,197 ******************************************************************************** 2026-03-13T22:05:05,198 ############################ 2026-03-13T22:05:05,198 # Package would be ignored # 2026-03-13T22:05:05,199 ############################ 2026-03-13T22:05:05,199 Python recognizes 'rna_tools.tools.diffpdb.lib' as an importable package[^1], 2026-03-13T22:05:05,200 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,200 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,201 package, please make sure that 'rna_tools.tools.diffpdb.lib' is explicitly added 2026-03-13T22:05:05,201 to the `packages` configuration field. 2026-03-13T22:05:05,202 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,202 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,202 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,203 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,204 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,205 If you don't want 'rna_tools.tools.diffpdb.lib' to be distributed and are 2026-03-13T22:05:05,205 already explicitly excluding 'rna_tools.tools.diffpdb.lib' via 2026-03-13T22:05:05,206 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,207 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,207 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,208 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,209 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,211 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,211 even if it does not contain any `.py` files. 2026-03-13T22:05:05,212 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,213 directory, all directories are treated like packages. 2026-03-13T22:05:05,213 ******************************************************************************** 2026-03-13T22:05:05,214 !! 2026-03-13T22:05:05,215 check.warn(importable) 2026-03-13T22:05:05,215 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.output' is absent from the `packages` configuration. 2026-03-13T22:05:05,216 !! 2026-03-13T22:05:05,217 ******************************************************************************** 2026-03-13T22:05:05,217 ############################ 2026-03-13T22:05:05,218 # Package would be ignored # 2026-03-13T22:05:05,218 ############################ 2026-03-13T22:05:05,219 Python recognizes 'rna_tools.tools.diffpdb.output' as an importable package[^1], 2026-03-13T22:05:05,219 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,220 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,220 package, please make sure that 'rna_tools.tools.diffpdb.output' is explicitly added 2026-03-13T22:05:05,221 to the `packages` configuration field. 2026-03-13T22:05:05,222 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,222 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,223 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,224 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,225 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,226 If you don't want 'rna_tools.tools.diffpdb.output' to be distributed and are 2026-03-13T22:05:05,227 already explicitly excluding 'rna_tools.tools.diffpdb.output' via 2026-03-13T22:05:05,227 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,227 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,228 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,228 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,229 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,230 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,230 even if it does not contain any `.py` files. 2026-03-13T22:05:05,231 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,231 directory, all directories are treated like packages. 2026-03-13T22:05:05,231 ******************************************************************************** 2026-03-13T22:05:05,232 !! 2026-03-13T22:05:05,232 check.warn(importable) 2026-03-13T22:05:05,233 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,233 !! 2026-03-13T22:05:05,234 ******************************************************************************** 2026-03-13T22:05:05,234 ############################ 2026-03-13T22:05:05,235 # Package would be ignored # 2026-03-13T22:05:05,235 ############################ 2026-03-13T22:05:05,236 Python recognizes 'rna_tools.tools.diffpdb.test_data' as an importable package[^1], 2026-03-13T22:05:05,236 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,237 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,238 package, please make sure that 'rna_tools.tools.diffpdb.test_data' is explicitly added 2026-03-13T22:05:05,238 to the `packages` configuration field. 2026-03-13T22:05:05,239 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,240 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,241 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,242 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,243 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,244 If you don't want 'rna_tools.tools.diffpdb.test_data' to be distributed and are 2026-03-13T22:05:05,244 already explicitly excluding 'rna_tools.tools.diffpdb.test_data' via 2026-03-13T22:05:05,245 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,245 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,246 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,247 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,248 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,250 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,250 even if it does not contain any `.py` files. 2026-03-13T22:05:05,251 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,251 directory, all directories are treated like packages. 2026-03-13T22:05:05,252 ******************************************************************************** 2026-03-13T22:05:05,253 !! 2026-03-13T22:05:05,253 check.warn(importable) 2026-03-13T22:05:05,253 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.data' is absent from the `packages` configuration. 2026-03-13T22:05:05,254 !! 2026-03-13T22:05:05,254 ******************************************************************************** 2026-03-13T22:05:05,255 ############################ 2026-03-13T22:05:05,255 # Package would be ignored # 2026-03-13T22:05:05,255 ############################ 2026-03-13T22:05:05,256 Python recognizes 'rna_tools.tools.md.data' as an importable package[^1], 2026-03-13T22:05:05,256 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,257 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,257 package, please make sure that 'rna_tools.tools.md.data' is explicitly added 2026-03-13T22:05:05,257 to the `packages` configuration field. 2026-03-13T22:05:05,258 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,258 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,259 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,259 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,260 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,261 If you don't want 'rna_tools.tools.md.data' to be distributed and are 2026-03-13T22:05:05,262 already explicitly excluding 'rna_tools.tools.md.data' via 2026-03-13T22:05:05,262 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,263 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,263 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,264 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,266 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,267 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,268 even if it does not contain any `.py` files. 2026-03-13T22:05:05,270 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,271 directory, all directories are treated like packages. 2026-03-13T22:05:05,271 ******************************************************************************** 2026-03-13T22:05:05,272 !! 2026-03-13T22:05:05,273 check.warn(importable) 2026-03-13T22:05:05,273 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,274 !! 2026-03-13T22:05:05,274 ******************************************************************************** 2026-03-13T22:05:05,275 ############################ 2026-03-13T22:05:05,275 # Package would be ignored # 2026-03-13T22:05:05,276 ############################ 2026-03-13T22:05:05,276 Python recognizes 'rna_tools.tools.md.test_data' as an importable package[^1], 2026-03-13T22:05:05,277 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,278 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,278 package, please make sure that 'rna_tools.tools.md.test_data' is explicitly added 2026-03-13T22:05:05,279 to the `packages` configuration field. 2026-03-13T22:05:05,280 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,281 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,281 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,281 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,282 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,283 If you don't want 'rna_tools.tools.md.test_data' to be distributed and are 2026-03-13T22:05:05,283 already explicitly excluding 'rna_tools.tools.md.test_data' via 2026-03-13T22:05:05,283 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,284 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,284 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,285 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,285 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,287 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,287 even if it does not contain any `.py` files. 2026-03-13T22:05:05,287 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,288 directory, all directories are treated like packages. 2026-03-13T22:05:05,288 ******************************************************************************** 2026-03-13T22:05:05,289 !! 2026-03-13T22:05:05,289 check.warn(importable) 2026-03-13T22:05:05,290 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:05,290 !! 2026-03-13T22:05:05,291 ******************************************************************************** 2026-03-13T22:05:05,292 ############################ 2026-03-13T22:05:05,292 # Package would be ignored # 2026-03-13T22:05:05,293 ############################ 2026-03-13T22:05:05,293 Python recognizes 'rna_tools.tools.md.test_output' as an importable package[^1], 2026-03-13T22:05:05,294 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,295 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,296 package, please make sure that 'rna_tools.tools.md.test_output' is explicitly added 2026-03-13T22:05:05,296 to the `packages` configuration field. 2026-03-13T22:05:05,297 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,298 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,298 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,299 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,300 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,301 If you don't want 'rna_tools.tools.md.test_output' to be distributed and are 2026-03-13T22:05:05,301 already explicitly excluding 'rna_tools.tools.md.test_output' via 2026-03-13T22:05:05,302 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,302 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,303 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,304 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,305 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,306 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,306 even if it does not contain any `.py` files. 2026-03-13T22:05:05,307 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,307 directory, all directories are treated like packages. 2026-03-13T22:05:05,307 ******************************************************************************** 2026-03-13T22:05:05,308 !! 2026-03-13T22:05:05,308 check.warn(importable) 2026-03-13T22:05:05,309 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is absent from the `packages` configuration. 2026-03-13T22:05:05,309 !! 2026-03-13T22:05:05,310 ******************************************************************************** 2026-03-13T22:05:05,310 ############################ 2026-03-13T22:05:05,311 # Package would be ignored # 2026-03-13T22:05:05,311 ############################ 2026-03-13T22:05:05,312 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' as an importable package[^1], 2026-03-13T22:05:05,312 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,313 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,313 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is explicitly added 2026-03-13T22:05:05,314 to the `packages` configuration field. 2026-03-13T22:05:05,315 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,316 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,316 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,317 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,319 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,320 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' to be distributed and are 2026-03-13T22:05:05,320 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' via 2026-03-13T22:05:05,321 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,322 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,322 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,323 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,324 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,325 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,326 even if it does not contain any `.py` files. 2026-03-13T22:05:05,326 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,326 directory, all directories are treated like packages. 2026-03-13T22:05:05,327 ******************************************************************************** 2026-03-13T22:05:05,328 !! 2026-03-13T22:05:05,329 check.warn(importable) 2026-03-13T22:05:05,329 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,330 !! 2026-03-13T22:05:05,331 ******************************************************************************** 2026-03-13T22:05:05,331 ############################ 2026-03-13T22:05:05,332 # Package would be ignored # 2026-03-13T22:05:05,332 ############################ 2026-03-13T22:05:05,333 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' as an importable package[^1], 2026-03-13T22:05:05,333 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,334 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,334 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is explicitly added 2026-03-13T22:05:05,334 to the `packages` configuration field. 2026-03-13T22:05:05,335 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,335 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,336 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,336 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,337 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,338 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' to be distributed and are 2026-03-13T22:05:05,339 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' via 2026-03-13T22:05:05,340 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,340 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,341 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,342 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,343 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,345 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,345 even if it does not contain any `.py` files. 2026-03-13T22:05:05,346 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,346 directory, all directories are treated like packages. 2026-03-13T22:05:05,347 ******************************************************************************** 2026-03-13T22:05:05,348 !! 2026-03-13T22:05:05,348 check.warn(importable) 2026-03-13T22:05:05,349 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data' is absent from the `packages` configuration. 2026-03-13T22:05:05,349 !! 2026-03-13T22:05:05,350 ******************************************************************************** 2026-03-13T22:05:05,351 ############################ 2026-03-13T22:05:05,351 # Package would be ignored # 2026-03-13T22:05:05,352 ############################ 2026-03-13T22:05:05,352 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data' as an importable package[^1], 2026-03-13T22:05:05,353 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,354 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,354 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data' is explicitly added 2026-03-13T22:05:05,355 to the `packages` configuration field. 2026-03-13T22:05:05,356 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,356 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,357 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,358 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,359 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,360 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data' to be distributed and are 2026-03-13T22:05:05,360 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data' via 2026-03-13T22:05:05,361 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,361 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,361 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,362 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,363 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,364 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,364 even if it does not contain any `.py` files. 2026-03-13T22:05:05,365 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,365 directory, all directories are treated like packages. 2026-03-13T22:05:05,366 ******************************************************************************** 2026-03-13T22:05:05,367 !! 2026-03-13T22:05:05,367 check.warn(importable) 2026-03-13T22:05:05,367 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is absent from the `packages` configuration. 2026-03-13T22:05:05,368 !! 2026-03-13T22:05:05,369 ******************************************************************************** 2026-03-13T22:05:05,369 ############################ 2026-03-13T22:05:05,370 # Package would be ignored # 2026-03-13T22:05:05,370 ############################ 2026-03-13T22:05:05,371 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' as an importable package[^1], 2026-03-13T22:05:05,371 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,372 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,373 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is explicitly added 2026-03-13T22:05:05,373 to the `packages` configuration field. 2026-03-13T22:05:05,374 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,375 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,375 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,376 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,378 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,379 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' to be distributed and are 2026-03-13T22:05:05,379 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' via 2026-03-13T22:05:05,380 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,380 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,381 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,382 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,383 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,384 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,385 even if it does not contain any `.py` files. 2026-03-13T22:05:05,386 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,386 directory, all directories are treated like packages. 2026-03-13T22:05:05,386 ******************************************************************************** 2026-03-13T22:05:05,387 !! 2026-03-13T22:05:05,387 check.warn(importable) 2026-03-13T22:05:05,388 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is absent from the `packages` configuration. 2026-03-13T22:05:05,388 !! 2026-03-13T22:05:05,389 ******************************************************************************** 2026-03-13T22:05:05,389 ############################ 2026-03-13T22:05:05,390 # Package would be ignored # 2026-03-13T22:05:05,390 ############################ 2026-03-13T22:05:05,390 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' as an importable package[^1], 2026-03-13T22:05:05,391 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,392 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,392 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is explicitly added 2026-03-13T22:05:05,392 to the `packages` configuration field. 2026-03-13T22:05:05,393 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,394 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,395 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,396 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,397 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,399 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' to be distributed and are 2026-03-13T22:05:05,400 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' via 2026-03-13T22:05:05,400 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,401 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,401 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,402 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,403 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,405 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,405 even if it does not contain any `.py` files. 2026-03-13T22:05:05,405 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,406 directory, all directories are treated like packages. 2026-03-13T22:05:05,406 ******************************************************************************** 2026-03-13T22:05:05,408 !! 2026-03-13T22:05:05,408 check.warn(importable) 2026-03-13T22:05:05,409 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is absent from the `packages` configuration. 2026-03-13T22:05:05,409 !! 2026-03-13T22:05:05,410 ******************************************************************************** 2026-03-13T22:05:05,410 ############################ 2026-03-13T22:05:05,411 # Package would be ignored # 2026-03-13T22:05:05,411 ############################ 2026-03-13T22:05:05,412 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' as an importable package[^1], 2026-03-13T22:05:05,413 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,414 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,414 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is explicitly added 2026-03-13T22:05:05,415 to the `packages` configuration field. 2026-03-13T22:05:05,415 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,416 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,416 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,417 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,418 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,418 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' to be distributed and are 2026-03-13T22:05:05,419 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' via 2026-03-13T22:05:05,419 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,419 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,420 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,421 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,421 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,423 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,423 even if it does not contain any `.py` files. 2026-03-13T22:05:05,424 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,424 directory, all directories are treated like packages. 2026-03-13T22:05:05,425 ******************************************************************************** 2026-03-13T22:05:05,426 !! 2026-03-13T22:05:05,426 check.warn(importable) 2026-03-13T22:05:05,427 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is absent from the `packages` configuration. 2026-03-13T22:05:05,428 !! 2026-03-13T22:05:05,428 ******************************************************************************** 2026-03-13T22:05:05,429 ############################ 2026-03-13T22:05:05,429 # Package would be ignored # 2026-03-13T22:05:05,430 ############################ 2026-03-13T22:05:05,430 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' as an importable package[^1], 2026-03-13T22:05:05,431 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,431 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,432 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is explicitly added 2026-03-13T22:05:05,432 to the `packages` configuration field. 2026-03-13T22:05:05,433 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,434 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,435 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,436 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,437 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,438 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' to be distributed and are 2026-03-13T22:05:05,438 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' via 2026-03-13T22:05:05,438 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,439 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,439 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,440 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,440 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,441 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,442 even if it does not contain any `.py` files. 2026-03-13T22:05:05,443 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,443 directory, all directories are treated like packages. 2026-03-13T22:05:05,444 ******************************************************************************** 2026-03-13T22:05:05,446 !! 2026-03-13T22:05:05,446 check.warn(importable) 2026-03-13T22:05:05,446 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARFAR2.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:05,447 !! 2026-03-13T22:05:05,448 ******************************************************************************** 2026-03-13T22:05:05,448 ############################ 2026-03-13T22:05:05,448 # Package would be ignored # 2026-03-13T22:05:05,449 ############################ 2026-03-13T22:05:05,449 Python recognizes 'rna_tools.tools.mq.FARFAR2.test_output' as an importable package[^1], 2026-03-13T22:05:05,450 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,451 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,451 package, please make sure that 'rna_tools.tools.mq.FARFAR2.test_output' is explicitly added 2026-03-13T22:05:05,451 to the `packages` configuration field. 2026-03-13T22:05:05,452 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,453 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,453 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,454 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,455 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,456 If you don't want 'rna_tools.tools.mq.FARFAR2.test_output' to be distributed and are 2026-03-13T22:05:05,456 already explicitly excluding 'rna_tools.tools.mq.FARFAR2.test_output' via 2026-03-13T22:05:05,457 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,457 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,458 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,459 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,460 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,461 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,462 even if it does not contain any `.py` files. 2026-03-13T22:05:05,462 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,463 directory, all directories are treated like packages. 2026-03-13T22:05:05,463 ******************************************************************************** 2026-03-13T22:05:05,464 !! 2026-03-13T22:05:05,464 check.warn(importable) 2026-03-13T22:05:05,465 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARNA.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:05,465 !! 2026-03-13T22:05:05,466 ******************************************************************************** 2026-03-13T22:05:05,466 ############################ 2026-03-13T22:05:05,467 # Package would be ignored # 2026-03-13T22:05:05,467 ############################ 2026-03-13T22:05:05,467 Python recognizes 'rna_tools.tools.mq.FARNA.test_output' as an importable package[^1], 2026-03-13T22:05:05,468 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,468 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,469 package, please make sure that 'rna_tools.tools.mq.FARNA.test_output' is explicitly added 2026-03-13T22:05:05,469 to the `packages` configuration field. 2026-03-13T22:05:05,470 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,470 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,471 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,472 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,473 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,473 If you don't want 'rna_tools.tools.mq.FARNA.test_output' to be distributed and are 2026-03-13T22:05:05,474 already explicitly excluding 'rna_tools.tools.mq.FARNA.test_output' via 2026-03-13T22:05:05,475 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,475 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,475 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,476 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,477 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,479 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,479 even if it does not contain any `.py` files. 2026-03-13T22:05:05,479 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,480 directory, all directories are treated like packages. 2026-03-13T22:05:05,481 ******************************************************************************** 2026-03-13T22:05:05,482 !! 2026-03-13T22:05:05,482 check.warn(importable) 2026-03-13T22:05:05,483 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.RNAkb.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,483 !! 2026-03-13T22:05:05,484 ******************************************************************************** 2026-03-13T22:05:05,485 ############################ 2026-03-13T22:05:05,485 # Package would be ignored # 2026-03-13T22:05:05,486 ############################ 2026-03-13T22:05:05,486 Python recognizes 'rna_tools.tools.mq.RNAkb.test_data' as an importable package[^1], 2026-03-13T22:05:05,487 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,488 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,488 package, please make sure that 'rna_tools.tools.mq.RNAkb.test_data' is explicitly added 2026-03-13T22:05:05,489 to the `packages` configuration field. 2026-03-13T22:05:05,489 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,490 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,490 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,491 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,492 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,492 If you don't want 'rna_tools.tools.mq.RNAkb.test_data' to be distributed and are 2026-03-13T22:05:05,493 already explicitly excluding 'rna_tools.tools.mq.RNAkb.test_data' via 2026-03-13T22:05:05,493 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,494 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,494 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,495 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,496 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,498 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,498 even if it does not contain any `.py` files. 2026-03-13T22:05:05,499 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,500 directory, all directories are treated like packages. 2026-03-13T22:05:05,500 ******************************************************************************** 2026-03-13T22:05:05,502 !! 2026-03-13T22:05:05,503 check.warn(importable) 2026-03-13T22:05:05,503 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.SimRNA.test' is absent from the `packages` configuration. 2026-03-13T22:05:05,504 !! 2026-03-13T22:05:05,506 ******************************************************************************** 2026-03-13T22:05:05,507 ############################ 2026-03-13T22:05:05,507 # Package would be ignored # 2026-03-13T22:05:05,508 ############################ 2026-03-13T22:05:05,509 Python recognizes 'rna_tools.tools.mq.SimRNA.test' as an importable package[^1], 2026-03-13T22:05:05,510 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,512 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,513 package, please make sure that 'rna_tools.tools.mq.SimRNA.test' is explicitly added 2026-03-13T22:05:05,514 to the `packages` configuration field. 2026-03-13T22:05:05,515 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,516 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,516 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,517 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,518 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,519 If you don't want 'rna_tools.tools.mq.SimRNA.test' to be distributed and are 2026-03-13T22:05:05,520 already explicitly excluding 'rna_tools.tools.mq.SimRNA.test' via 2026-03-13T22:05:05,520 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,521 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,522 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,522 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,523 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,524 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,524 even if it does not contain any `.py` files. 2026-03-13T22:05:05,525 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,525 directory, all directories are treated like packages. 2026-03-13T22:05:05,525 ******************************************************************************** 2026-03-13T22:05:05,526 !! 2026-03-13T22:05:05,526 check.warn(importable) 2026-03-13T22:05:05,527 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.eSCORE.test' is absent from the `packages` configuration. 2026-03-13T22:05:05,527 !! 2026-03-13T22:05:05,528 ******************************************************************************** 2026-03-13T22:05:05,528 ############################ 2026-03-13T22:05:05,529 # Package would be ignored # 2026-03-13T22:05:05,529 ############################ 2026-03-13T22:05:05,530 Python recognizes 'rna_tools.tools.mq.eSCORE.test' as an importable package[^1], 2026-03-13T22:05:05,530 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,531 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,532 package, please make sure that 'rna_tools.tools.mq.eSCORE.test' is explicitly added 2026-03-13T22:05:05,532 to the `packages` configuration field. 2026-03-13T22:05:05,533 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,534 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,534 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,535 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,536 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,538 If you don't want 'rna_tools.tools.mq.eSCORE.test' to be distributed and are 2026-03-13T22:05:05,538 already explicitly excluding 'rna_tools.tools.mq.eSCORE.test' via 2026-03-13T22:05:05,539 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,539 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,539 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,540 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,541 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,543 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,543 even if it does not contain any `.py` files. 2026-03-13T22:05:05,544 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,544 directory, all directories are treated like packages. 2026-03-13T22:05:05,544 ******************************************************************************** 2026-03-13T22:05:05,545 !! 2026-03-13T22:05:05,546 check.warn(importable) 2026-03-13T22:05:05,547 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.test' is absent from the `packages` configuration. 2026-03-13T22:05:05,547 !! 2026-03-13T22:05:05,548 ******************************************************************************** 2026-03-13T22:05:05,549 ############################ 2026-03-13T22:05:05,549 # Package would be ignored # 2026-03-13T22:05:05,549 ############################ 2026-03-13T22:05:05,550 Python recognizes 'rna_tools.tools.mq.test' as an importable package[^1], 2026-03-13T22:05:05,550 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,551 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,551 package, please make sure that 'rna_tools.tools.mq.test' is explicitly added 2026-03-13T22:05:05,551 to the `packages` configuration field. 2026-03-13T22:05:05,552 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,552 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,553 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,553 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,554 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,555 If you don't want 'rna_tools.tools.mq.test' to be distributed and are 2026-03-13T22:05:05,555 already explicitly excluding 'rna_tools.tools.mq.test' via 2026-03-13T22:05:05,556 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,556 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,557 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,558 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,559 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,561 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,562 even if it does not contain any `.py` files. 2026-03-13T22:05:05,563 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,563 directory, all directories are treated like packages. 2026-03-13T22:05:05,564 ******************************************************************************** 2026-03-13T22:05:05,565 !! 2026-03-13T22:05:05,565 check.warn(importable) 2026-03-13T22:05:05,566 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.tmp' is absent from the `packages` configuration. 2026-03-13T22:05:05,567 !! 2026-03-13T22:05:05,568 ******************************************************************************** 2026-03-13T22:05:05,568 ############################ 2026-03-13T22:05:05,569 # Package would be ignored # 2026-03-13T22:05:05,570 ############################ 2026-03-13T22:05:05,570 Python recognizes 'rna_tools.tools.mq.tmp' as an importable package[^1], 2026-03-13T22:05:05,571 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,572 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,573 package, please make sure that 'rna_tools.tools.mq.tmp' is explicitly added 2026-03-13T22:05:05,574 to the `packages` configuration field. 2026-03-13T22:05:05,576 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,577 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,578 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,580 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,580 If you don't want 'rna_tools.tools.mq.tmp' to be distributed and are 2026-03-13T22:05:05,581 already explicitly excluding 'rna_tools.tools.mq.tmp' via 2026-03-13T22:05:05,581 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,581 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,582 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,582 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,584 even if it does not contain any `.py` files. 2026-03-13T22:05:05,585 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,585 directory, all directories are treated like packages. 2026-03-13T22:05:05,586 ******************************************************************************** 2026-03-13T22:05:05,587 !! 2026-03-13T22:05:05,587 check.warn(importable) 2026-03-13T22:05:05,588 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.openfold' is absent from the `packages` configuration. 2026-03-13T22:05:05,588 !! 2026-03-13T22:05:05,589 ******************************************************************************** 2026-03-13T22:05:05,590 ############################ 2026-03-13T22:05:05,590 # Package would be ignored # 2026-03-13T22:05:05,591 ############################ 2026-03-13T22:05:05,592 Python recognizes 'rna_tools.tools.openfold' as an importable package[^1], 2026-03-13T22:05:05,592 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,593 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,594 package, please make sure that 'rna_tools.tools.openfold' is explicitly added 2026-03-13T22:05:05,595 to the `packages` configuration field. 2026-03-13T22:05:05,596 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,596 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,597 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,598 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,600 If you don't want 'rna_tools.tools.openfold' to be distributed and are 2026-03-13T22:05:05,600 already explicitly excluding 'rna_tools.tools.openfold' via 2026-03-13T22:05:05,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,601 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,602 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,603 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,603 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,605 even if it does not contain any `.py` files. 2026-03-13T22:05:05,606 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,606 directory, all directories are treated like packages. 2026-03-13T22:05:05,607 ******************************************************************************** 2026-03-13T22:05:05,608 !! 2026-03-13T22:05:05,608 check.warn(importable) 2026-03-13T22:05:05,608 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,609 !! 2026-03-13T22:05:05,609 ******************************************************************************** 2026-03-13T22:05:05,610 ############################ 2026-03-13T22:05:05,610 # Package would be ignored # 2026-03-13T22:05:05,610 ############################ 2026-03-13T22:05:05,611 Python recognizes 'rna_tools.tools.pdbs_measure_atom_dists.test_data' as an importable package[^1], 2026-03-13T22:05:05,611 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,612 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,612 package, please make sure that 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is explicitly added 2026-03-13T22:05:05,612 to the `packages` configuration field. 2026-03-13T22:05:05,613 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,614 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,614 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,615 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,617 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,619 If you don't want 'rna_tools.tools.pdbs_measure_atom_dists.test_data' to be distributed and are 2026-03-13T22:05:05,620 already explicitly excluding 'rna_tools.tools.pdbs_measure_atom_dists.test_data' via 2026-03-13T22:05:05,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,623 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,625 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,628 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,631 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,632 even if it does not contain any `.py` files. 2026-03-13T22:05:05,632 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,633 directory, all directories are treated like packages. 2026-03-13T22:05:05,633 ******************************************************************************** 2026-03-13T22:05:05,634 !! 2026-03-13T22:05:05,634 check.warn(importable) 2026-03-13T22:05:05,635 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.plotting.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,635 !! 2026-03-13T22:05:05,636 ******************************************************************************** 2026-03-13T22:05:05,637 ############################ 2026-03-13T22:05:05,637 # Package would be ignored # 2026-03-13T22:05:05,638 ############################ 2026-03-13T22:05:05,638 Python recognizes 'rna_tools.tools.plotting.test_data' as an importable package[^1], 2026-03-13T22:05:05,639 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,641 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,641 package, please make sure that 'rna_tools.tools.plotting.test_data' is explicitly added 2026-03-13T22:05:05,642 to the `packages` configuration field. 2026-03-13T22:05:05,642 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,643 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,643 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,644 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,644 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,645 If you don't want 'rna_tools.tools.plotting.test_data' to be distributed and are 2026-03-13T22:05:05,646 already explicitly excluding 'rna_tools.tools.plotting.test_data' via 2026-03-13T22:05:05,646 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,646 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,647 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,648 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,649 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,650 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,650 even if it does not contain any `.py` files. 2026-03-13T22:05:05,651 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,651 directory, all directories are treated like packages. 2026-03-13T22:05:05,652 ******************************************************************************** 2026-03-13T22:05:05,653 !! 2026-03-13T22:05:05,653 check.warn(importable) 2026-03-13T22:05:05,654 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.proteins' is absent from the `packages` configuration. 2026-03-13T22:05:05,654 !! 2026-03-13T22:05:05,655 ******************************************************************************** 2026-03-13T22:05:05,656 ############################ 2026-03-13T22:05:05,656 # Package would be ignored # 2026-03-13T22:05:05,657 ############################ 2026-03-13T22:05:05,657 Python recognizes 'rna_tools.tools.proteins' as an importable package[^1], 2026-03-13T22:05:05,658 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,659 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,659 package, please make sure that 'rna_tools.tools.proteins' is explicitly added 2026-03-13T22:05:05,660 to the `packages` configuration field. 2026-03-13T22:05:05,661 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,661 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,662 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,662 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,663 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,664 If you don't want 'rna_tools.tools.proteins' to be distributed and are 2026-03-13T22:05:05,665 already explicitly excluding 'rna_tools.tools.proteins' via 2026-03-13T22:05:05,666 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,666 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,667 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,668 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,668 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,669 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,670 even if it does not contain any `.py` files. 2026-03-13T22:05:05,670 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,670 directory, all directories are treated like packages. 2026-03-13T22:05:05,671 ******************************************************************************** 2026-03-13T22:05:05,671 !! 2026-03-13T22:05:05,672 check.warn(importable) 2026-03-13T22:05:05,672 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv' is absent from the `packages` configuration. 2026-03-13T22:05:05,672 !! 2026-03-13T22:05:05,673 ******************************************************************************** 2026-03-13T22:05:05,674 ############################ 2026-03-13T22:05:05,674 # Package would be ignored # 2026-03-13T22:05:05,674 ############################ 2026-03-13T22:05:05,675 Python recognizes 'rna_tools.tools.pymol_color_by_conserv' as an importable package[^1], 2026-03-13T22:05:05,675 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,676 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,676 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv' is explicitly added 2026-03-13T22:05:05,677 to the `packages` configuration field. 2026-03-13T22:05:05,678 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,678 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,678 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,679 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,680 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,681 If you don't want 'rna_tools.tools.pymol_color_by_conserv' to be distributed and are 2026-03-13T22:05:05,682 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv' via 2026-03-13T22:05:05,682 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,683 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,683 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,684 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,685 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,687 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,687 even if it does not contain any `.py` files. 2026-03-13T22:05:05,687 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,688 directory, all directories are treated like packages. 2026-03-13T22:05:05,688 ******************************************************************************** 2026-03-13T22:05:05,689 !! 2026-03-13T22:05:05,690 check.warn(importable) 2026-03-13T22:05:05,691 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is absent from the `packages` configuration. 2026-03-13T22:05:05,691 !! 2026-03-13T22:05:05,692 ******************************************************************************** 2026-03-13T22:05:05,692 ############################ 2026-03-13T22:05:05,693 # Package would be ignored # 2026-03-13T22:05:05,693 ############################ 2026-03-13T22:05:05,693 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' as an importable package[^1], 2026-03-13T22:05:05,694 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,695 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,695 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is explicitly added 2026-03-13T22:05:05,695 to the `packages` configuration field. 2026-03-13T22:05:05,696 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,696 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,697 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,697 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,698 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,699 If you don't want 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' to be distributed and are 2026-03-13T22:05:05,700 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' via 2026-03-13T22:05:05,700 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,701 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,701 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,702 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,705 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,706 even if it does not contain any `.py` files. 2026-03-13T22:05:05,737 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,738 directory, all directories are treated like packages. 2026-03-13T22:05:05,738 ******************************************************************************** 2026-03-13T22:05:05,739 !! 2026-03-13T22:05:05,740 check.warn(importable) 2026-03-13T22:05:05,740 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.docs' is absent from the `packages` configuration. 2026-03-13T22:05:05,741 !! 2026-03-13T22:05:05,742 ******************************************************************************** 2026-03-13T22:05:05,742 ############################ 2026-03-13T22:05:05,743 # Package would be ignored # 2026-03-13T22:05:05,744 ############################ 2026-03-13T22:05:05,744 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.docs' as an importable package[^1], 2026-03-13T22:05:05,745 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,746 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,747 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.docs' is explicitly added 2026-03-13T22:05:05,748 to the `packages` configuration field. 2026-03-13T22:05:05,788 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,788 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,789 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,790 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,791 If you don't want 'rna_tools.tools.pymol_color_by_conserv.docs' to be distributed and are 2026-03-13T22:05:05,791 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.docs' via 2026-03-13T22:05:05,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,792 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,793 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,794 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,795 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,795 even if it does not contain any `.py` files. 2026-03-13T22:05:05,796 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,796 directory, all directories are treated like packages. 2026-03-13T22:05:05,796 ******************************************************************************** 2026-03-13T22:05:05,797 !! 2026-03-13T22:05:05,798 check.warn(importable) 2026-03-13T22:05:05,798 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.docs' is absent from the `packages` configuration. 2026-03-13T22:05:05,799 !! 2026-03-13T22:05:05,799 ******************************************************************************** 2026-03-13T22:05:05,800 ############################ 2026-03-13T22:05:05,800 # Package would be ignored # 2026-03-13T22:05:05,801 ############################ 2026-03-13T22:05:05,801 Python recognizes 'rna_tools.tools.pymol_drawing.docs' as an importable package[^1], 2026-03-13T22:05:05,802 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,802 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,803 package, please make sure that 'rna_tools.tools.pymol_drawing.docs' is explicitly added 2026-03-13T22:05:05,803 to the `packages` configuration field. 2026-03-13T22:05:05,805 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,805 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,806 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,807 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,808 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,809 If you don't want 'rna_tools.tools.pymol_drawing.docs' to be distributed and are 2026-03-13T22:05:05,809 already explicitly excluding 'rna_tools.tools.pymol_drawing.docs' via 2026-03-13T22:05:05,810 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,810 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,811 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,812 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,813 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,814 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,815 even if it does not contain any `.py` files. 2026-03-13T22:05:05,816 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,816 directory, all directories are treated like packages. 2026-03-13T22:05:05,817 ******************************************************************************** 2026-03-13T22:05:05,818 !! 2026-03-13T22:05:05,818 check.warn(importable) 2026-03-13T22:05:05,819 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,819 !! 2026-03-13T22:05:05,820 ******************************************************************************** 2026-03-13T22:05:05,821 ############################ 2026-03-13T22:05:05,821 # Package would be ignored # 2026-03-13T22:05:05,822 ############################ 2026-03-13T22:05:05,822 Python recognizes 'rna_tools.tools.pymol_drawing.test_data' as an importable package[^1], 2026-03-13T22:05:05,822 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,823 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,823 package, please make sure that 'rna_tools.tools.pymol_drawing.test_data' is explicitly added 2026-03-13T22:05:05,824 to the `packages` configuration field. 2026-03-13T22:05:05,825 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,825 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,825 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,826 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,827 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,828 If you don't want 'rna_tools.tools.pymol_drawing.test_data' to be distributed and are 2026-03-13T22:05:05,828 already explicitly excluding 'rna_tools.tools.pymol_drawing.test_data' via 2026-03-13T22:05:05,829 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,829 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,830 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,830 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,831 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,833 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,833 even if it does not contain any `.py` files. 2026-03-13T22:05:05,834 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,834 directory, all directories are treated like packages. 2026-03-13T22:05:05,834 ******************************************************************************** 2026-03-13T22:05:05,835 !! 2026-03-13T22:05:05,836 check.warn(importable) 2026-03-13T22:05:05,836 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator' is absent from the `packages` configuration. 2026-03-13T22:05:05,837 !! 2026-03-13T22:05:05,838 ******************************************************************************** 2026-03-13T22:05:05,838 ############################ 2026-03-13T22:05:05,839 # Package would be ignored # 2026-03-13T22:05:05,839 ############################ 2026-03-13T22:05:05,840 Python recognizes 'rna_tools.tools.pymol_preview_generator' as an importable package[^1], 2026-03-13T22:05:05,840 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,841 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,842 package, please make sure that 'rna_tools.tools.pymol_preview_generator' is explicitly added 2026-03-13T22:05:05,842 to the `packages` configuration field. 2026-03-13T22:05:05,843 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,843 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,844 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,844 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,845 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,846 If you don't want 'rna_tools.tools.pymol_preview_generator' to be distributed and are 2026-03-13T22:05:05,846 already explicitly excluding 'rna_tools.tools.pymol_preview_generator' via 2026-03-13T22:05:05,846 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,847 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,847 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,848 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,849 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,850 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,850 even if it does not contain any `.py` files. 2026-03-13T22:05:05,851 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,851 directory, all directories are treated like packages. 2026-03-13T22:05:05,852 ******************************************************************************** 2026-03-13T22:05:05,853 !! 2026-03-13T22:05:05,853 check.warn(importable) 2026-03-13T22:05:05,854 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.bash' is absent from the `packages` configuration. 2026-03-13T22:05:05,854 !! 2026-03-13T22:05:05,855 ******************************************************************************** 2026-03-13T22:05:05,856 ############################ 2026-03-13T22:05:05,857 # Package would be ignored # 2026-03-13T22:05:05,857 ############################ 2026-03-13T22:05:05,858 Python recognizes 'rna_tools.tools.pymol_preview_generator.bash' as an importable package[^1], 2026-03-13T22:05:05,858 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,859 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,860 package, please make sure that 'rna_tools.tools.pymol_preview_generator.bash' is explicitly added 2026-03-13T22:05:05,860 to the `packages` configuration field. 2026-03-13T22:05:05,862 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,862 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,863 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,864 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,865 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,866 If you don't want 'rna_tools.tools.pymol_preview_generator.bash' to be distributed and are 2026-03-13T22:05:05,867 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.bash' via 2026-03-13T22:05:05,868 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,869 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,869 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,871 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,872 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,874 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,874 even if it does not contain any `.py` files. 2026-03-13T22:05:05,875 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,875 directory, all directories are treated like packages. 2026-03-13T22:05:05,876 ******************************************************************************** 2026-03-13T22:05:05,877 !! 2026-03-13T22:05:05,877 check.warn(importable) 2026-03-13T22:05:05,878 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.docs' is absent from the `packages` configuration. 2026-03-13T22:05:05,878 !! 2026-03-13T22:05:05,879 ******************************************************************************** 2026-03-13T22:05:05,880 ############################ 2026-03-13T22:05:05,880 # Package would be ignored # 2026-03-13T22:05:05,881 ############################ 2026-03-13T22:05:05,881 Python recognizes 'rna_tools.tools.pymol_preview_generator.docs' as an importable package[^1], 2026-03-13T22:05:05,882 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,883 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,884 package, please make sure that 'rna_tools.tools.pymol_preview_generator.docs' is explicitly added 2026-03-13T22:05:05,884 to the `packages` configuration field. 2026-03-13T22:05:05,886 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,886 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,887 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,888 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,890 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,891 If you don't want 'rna_tools.tools.pymol_preview_generator.docs' to be distributed and are 2026-03-13T22:05:05,891 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.docs' via 2026-03-13T22:05:05,892 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,892 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,893 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,894 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,895 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,897 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,898 even if it does not contain any `.py` files. 2026-03-13T22:05:05,898 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,899 directory, all directories are treated like packages. 2026-03-13T22:05:05,899 ******************************************************************************** 2026-03-13T22:05:05,901 !! 2026-03-13T22:05:05,901 check.warn(importable) 2026-03-13T22:05:05,902 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.zsh' is absent from the `packages` configuration. 2026-03-13T22:05:05,902 !! 2026-03-13T22:05:05,903 ******************************************************************************** 2026-03-13T22:05:05,903 ############################ 2026-03-13T22:05:05,904 # Package would be ignored # 2026-03-13T22:05:05,904 ############################ 2026-03-13T22:05:05,905 Python recognizes 'rna_tools.tools.pymol_preview_generator.zsh' as an importable package[^1], 2026-03-13T22:05:05,905 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,906 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,907 package, please make sure that 'rna_tools.tools.pymol_preview_generator.zsh' is explicitly added 2026-03-13T22:05:05,907 to the `packages` configuration field. 2026-03-13T22:05:05,908 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,908 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,909 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,910 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,911 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,912 If you don't want 'rna_tools.tools.pymol_preview_generator.zsh' to be distributed and are 2026-03-13T22:05:05,913 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.zsh' via 2026-03-13T22:05:05,913 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,914 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,914 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,915 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,916 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,918 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,919 even if it does not contain any `.py` files. 2026-03-13T22:05:05,920 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,920 directory, all directories are treated like packages. 2026-03-13T22:05:05,921 ******************************************************************************** 2026-03-13T22:05:05,923 !! 2026-03-13T22:05:05,923 check.warn(importable) 2026-03-13T22:05:05,924 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.renum_pdb_to_aln.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,924 !! 2026-03-13T22:05:05,926 ******************************************************************************** 2026-03-13T22:05:05,926 ############################ 2026-03-13T22:05:05,927 # Package would be ignored # 2026-03-13T22:05:05,927 ############################ 2026-03-13T22:05:05,928 Python recognizes 'rna_tools.tools.renum_pdb_to_aln.test_data' as an importable package[^1], 2026-03-13T22:05:05,929 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,930 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,931 package, please make sure that 'rna_tools.tools.renum_pdb_to_aln.test_data' is explicitly added 2026-03-13T22:05:05,931 to the `packages` configuration field. 2026-03-13T22:05:05,933 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,933 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,933 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,934 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,935 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,936 If you don't want 'rna_tools.tools.renum_pdb_to_aln.test_data' to be distributed and are 2026-03-13T22:05:05,937 already explicitly excluding 'rna_tools.tools.renum_pdb_to_aln.test_data' via 2026-03-13T22:05:05,937 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,938 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,938 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,939 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,940 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,942 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,943 even if it does not contain any `.py` files. 2026-03-13T22:05:05,943 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,944 directory, all directories are treated like packages. 2026-03-13T22:05:05,945 ******************************************************************************** 2026-03-13T22:05:05,946 !! 2026-03-13T22:05:05,946 check.warn(importable) 2026-03-13T22:05:05,947 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.pngs' is absent from the `packages` configuration. 2026-03-13T22:05:05,947 !! 2026-03-13T22:05:05,949 ******************************************************************************** 2026-03-13T22:05:05,949 ############################ 2026-03-13T22:05:05,950 # Package would be ignored # 2026-03-13T22:05:05,950 ############################ 2026-03-13T22:05:05,951 Python recognizes 'rna_tools.tools.rna_alignment.pngs' as an importable package[^1], 2026-03-13T22:05:05,951 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,953 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,953 package, please make sure that 'rna_tools.tools.rna_alignment.pngs' is explicitly added 2026-03-13T22:05:05,954 to the `packages` configuration field. 2026-03-13T22:05:05,955 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,956 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,956 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,958 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,959 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,960 If you don't want 'rna_tools.tools.rna_alignment.pngs' to be distributed and are 2026-03-13T22:05:05,960 already explicitly excluding 'rna_tools.tools.rna_alignment.pngs' via 2026-03-13T22:05:05,961 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,961 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,962 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,963 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,964 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,965 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,965 even if it does not contain any `.py` files. 2026-03-13T22:05:05,965 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,966 directory, all directories are treated like packages. 2026-03-13T22:05:05,966 ******************************************************************************** 2026-03-13T22:05:05,967 !! 2026-03-13T22:05:05,967 check.warn(importable) 2026-03-13T22:05:05,968 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:05,968 !! 2026-03-13T22:05:05,969 ******************************************************************************** 2026-03-13T22:05:05,969 ############################ 2026-03-13T22:05:05,969 # Package would be ignored # 2026-03-13T22:05:05,970 ############################ 2026-03-13T22:05:05,970 Python recognizes 'rna_tools.tools.rna_alignment.test_data' as an importable package[^1], 2026-03-13T22:05:05,971 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,972 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,972 package, please make sure that 'rna_tools.tools.rna_alignment.test_data' is explicitly added 2026-03-13T22:05:05,972 to the `packages` configuration field. 2026-03-13T22:05:05,973 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,974 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,974 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,975 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,976 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,977 If you don't want 'rna_tools.tools.rna_alignment.test_data' to be distributed and are 2026-03-13T22:05:05,978 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data' via 2026-03-13T22:05:05,978 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,979 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,979 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,980 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:05,981 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:05,982 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:05,983 even if it does not contain any `.py` files. 2026-03-13T22:05:05,983 On the other hand, currently there is no concept of package data 2026-03-13T22:05:05,984 directory, all directories are treated like packages. 2026-03-13T22:05:05,984 ******************************************************************************** 2026-03-13T22:05:05,985 !! 2026-03-13T22:05:05,986 check.warn(importable) 2026-03-13T22:05:05,986 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.foldability' is absent from the `packages` configuration. 2026-03-13T22:05:05,987 !! 2026-03-13T22:05:05,988 ******************************************************************************** 2026-03-13T22:05:05,988 ############################ 2026-03-13T22:05:05,989 # Package would be ignored # 2026-03-13T22:05:05,989 ############################ 2026-03-13T22:05:05,990 Python recognizes 'rna_tools.tools.rna_alignment.test_data.foldability' as an importable package[^1], 2026-03-13T22:05:05,990 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:05,991 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:05,991 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.foldability' is explicitly added 2026-03-13T22:05:05,992 to the `packages` configuration field. 2026-03-13T22:05:05,993 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:05,993 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:05,993 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:05,994 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:05,995 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:05,996 If you don't want 'rna_tools.tools.rna_alignment.test_data.foldability' to be distributed and are 2026-03-13T22:05:05,997 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.foldability' via 2026-03-13T22:05:05,997 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:05,997 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:05,998 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:05,999 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,000 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,002 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,002 even if it does not contain any `.py` files. 2026-03-13T22:05:06,003 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,003 directory, all directories are treated like packages. 2026-03-13T22:05:06,004 ******************************************************************************** 2026-03-13T22:05:06,005 !! 2026-03-13T22:05:06,005 check.warn(importable) 2026-03-13T22:05:06,005 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is absent from the `packages` configuration. 2026-03-13T22:05:06,006 !! 2026-03-13T22:05:06,007 ******************************************************************************** 2026-03-13T22:05:06,007 ############################ 2026-03-13T22:05:06,008 # Package would be ignored # 2026-03-13T22:05:06,008 ############################ 2026-03-13T22:05:06,009 Python recognizes 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' as an importable package[^1], 2026-03-13T22:05:06,009 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,010 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,010 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is explicitly added 2026-03-13T22:05:06,011 to the `packages` configuration field. 2026-03-13T22:05:06,012 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,012 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,013 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,014 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,015 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,016 If you don't want 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' to be distributed and are 2026-03-13T22:05:06,016 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' via 2026-03-13T22:05:06,016 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,017 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,017 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,018 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,019 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,020 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,021 even if it does not contain any `.py` files. 2026-03-13T22:05:06,021 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,021 directory, all directories are treated like packages. 2026-03-13T22:05:06,022 ******************************************************************************** 2026-03-13T22:05:06,022 !! 2026-03-13T22:05:06,023 check.warn(importable) 2026-03-13T22:05:06,023 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:06,024 !! 2026-03-13T22:05:06,025 ******************************************************************************** 2026-03-13T22:05:06,025 ############################ 2026-03-13T22:05:06,026 # Package would be ignored # 2026-03-13T22:05:06,026 ############################ 2026-03-13T22:05:06,027 Python recognizes 'rna_tools.tools.rna_alignment.test_output' as an importable package[^1], 2026-03-13T22:05:06,027 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,028 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,028 package, please make sure that 'rna_tools.tools.rna_alignment.test_output' is explicitly added 2026-03-13T22:05:06,029 to the `packages` configuration field. 2026-03-13T22:05:06,030 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,030 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,031 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,032 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,033 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,033 If you don't want 'rna_tools.tools.rna_alignment.test_output' to be distributed and are 2026-03-13T22:05:06,034 already explicitly excluding 'rna_tools.tools.rna_alignment.test_output' via 2026-03-13T22:05:06,034 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,035 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,036 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,037 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,038 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,039 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,040 even if it does not contain any `.py` files. 2026-03-13T22:05:06,041 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,041 directory, all directories are treated like packages. 2026-03-13T22:05:06,041 ******************************************************************************** 2026-03-13T22:05:06,042 !! 2026-03-13T22:05:06,042 check.warn(importable) 2026-03-13T22:05:06,043 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.utils.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,043 !! 2026-03-13T22:05:06,044 ******************************************************************************** 2026-03-13T22:05:06,044 ############################ 2026-03-13T22:05:06,044 # Package would be ignored # 2026-03-13T22:05:06,045 ############################ 2026-03-13T22:05:06,045 Python recognizes 'rna_tools.tools.rna_alignment.utils.test_data' as an importable package[^1], 2026-03-13T22:05:06,045 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,046 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,047 package, please make sure that 'rna_tools.tools.rna_alignment.utils.test_data' is explicitly added 2026-03-13T22:05:06,047 to the `packages` configuration field. 2026-03-13T22:05:06,048 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,048 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,049 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,049 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,050 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,051 If you don't want 'rna_tools.tools.rna_alignment.utils.test_data' to be distributed and are 2026-03-13T22:05:06,051 already explicitly excluding 'rna_tools.tools.rna_alignment.utils.test_data' via 2026-03-13T22:05:06,052 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,052 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,053 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,053 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,054 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,055 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,056 even if it does not contain any `.py` files. 2026-03-13T22:05:06,056 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,057 directory, all directories are treated like packages. 2026-03-13T22:05:06,057 ******************************************************************************** 2026-03-13T22:05:06,058 !! 2026-03-13T22:05:06,059 check.warn(importable) 2026-03-13T22:05:06,059 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_binding_affinity' is absent from the `packages` configuration. 2026-03-13T22:05:06,059 !! 2026-03-13T22:05:06,060 ******************************************************************************** 2026-03-13T22:05:06,061 ############################ 2026-03-13T22:05:06,061 # Package would be ignored # 2026-03-13T22:05:06,062 ############################ 2026-03-13T22:05:06,062 Python recognizes 'rna_tools.tools.rna_binding_affinity' as an importable package[^1], 2026-03-13T22:05:06,063 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,064 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,064 package, please make sure that 'rna_tools.tools.rna_binding_affinity' is explicitly added 2026-03-13T22:05:06,065 to the `packages` configuration field. 2026-03-13T22:05:06,065 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,066 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,066 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,067 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,067 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,068 If you don't want 'rna_tools.tools.rna_binding_affinity' to be distributed and are 2026-03-13T22:05:06,068 already explicitly excluding 'rna_tools.tools.rna_binding_affinity' via 2026-03-13T22:05:06,069 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,069 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,069 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,070 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,071 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,072 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,073 even if it does not contain any `.py` files. 2026-03-13T22:05:06,073 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,074 directory, all directories are treated like packages. 2026-03-13T22:05:06,074 ******************************************************************************** 2026-03-13T22:05:06,075 !! 2026-03-13T22:05:06,076 check.warn(importable) 2026-03-13T22:05:06,076 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,076 !! 2026-03-13T22:05:06,078 ******************************************************************************** 2026-03-13T22:05:06,078 ############################ 2026-03-13T22:05:06,079 # Package would be ignored # 2026-03-13T22:05:06,080 ############################ 2026-03-13T22:05:06,080 Python recognizes 'rna_tools.tools.rna_calc_evo_rmsd.test_data' as an importable package[^1], 2026-03-13T22:05:06,081 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,082 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,083 package, please make sure that 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is explicitly added 2026-03-13T22:05:06,084 to the `packages` configuration field. 2026-03-13T22:05:06,085 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,086 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,086 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,087 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,088 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,089 If you don't want 'rna_tools.tools.rna_calc_evo_rmsd.test_data' to be distributed and are 2026-03-13T22:05:06,090 already explicitly excluding 'rna_tools.tools.rna_calc_evo_rmsd.test_data' via 2026-03-13T22:05:06,090 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,091 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,091 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,092 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,093 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,094 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,094 even if it does not contain any `.py` files. 2026-03-13T22:05:06,094 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,095 directory, all directories are treated like packages. 2026-03-13T22:05:06,095 ******************************************************************************** 2026-03-13T22:05:06,096 !! 2026-03-13T22:05:06,096 check.warn(importable) 2026-03-13T22:05:06,096 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_gdt' is absent from the `packages` configuration. 2026-03-13T22:05:06,097 !! 2026-03-13T22:05:06,097 ******************************************************************************** 2026-03-13T22:05:06,098 ############################ 2026-03-13T22:05:06,098 # Package would be ignored # 2026-03-13T22:05:06,099 ############################ 2026-03-13T22:05:06,099 Python recognizes 'rna_tools.tools.rna_calc_gdt' as an importable package[^1], 2026-03-13T22:05:06,099 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,101 package, please make sure that 'rna_tools.tools.rna_calc_gdt' is explicitly added 2026-03-13T22:05:06,101 to the `packages` configuration field. 2026-03-13T22:05:06,102 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,102 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,103 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,104 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,105 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,106 If you don't want 'rna_tools.tools.rna_calc_gdt' to be distributed and are 2026-03-13T22:05:06,106 already explicitly excluding 'rna_tools.tools.rna_calc_gdt' via 2026-03-13T22:05:06,107 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,107 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,108 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,109 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,111 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,111 even if it does not contain any `.py` files. 2026-03-13T22:05:06,112 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,112 directory, all directories are treated like packages. 2026-03-13T22:05:06,113 ******************************************************************************** 2026-03-13T22:05:06,114 !! 2026-03-13T22:05:06,115 check.warn(importable) 2026-03-13T22:05:06,115 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds' is absent from the `packages` configuration. 2026-03-13T22:05:06,115 !! 2026-03-13T22:05:06,116 ******************************************************************************** 2026-03-13T22:05:06,116 ############################ 2026-03-13T22:05:06,117 # Package would be ignored # 2026-03-13T22:05:06,117 ############################ 2026-03-13T22:05:06,117 Python recognizes 'rna_tools.tools.rna_calc_hbonds' as an importable package[^1], 2026-03-13T22:05:06,118 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,118 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,119 package, please make sure that 'rna_tools.tools.rna_calc_hbonds' is explicitly added 2026-03-13T22:05:06,119 to the `packages` configuration field. 2026-03-13T22:05:06,120 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,120 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,120 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,121 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,122 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,123 If you don't want 'rna_tools.tools.rna_calc_hbonds' to be distributed and are 2026-03-13T22:05:06,123 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds' via 2026-03-13T22:05:06,124 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,124 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,124 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,125 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,129 even if it does not contain any `.py` files. 2026-03-13T22:05:06,129 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,130 directory, all directories are treated like packages. 2026-03-13T22:05:06,131 ******************************************************************************** 2026-03-13T22:05:06,132 !! 2026-03-13T22:05:06,133 check.warn(importable) 2026-03-13T22:05:06,133 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.docs' is absent from the `packages` configuration. 2026-03-13T22:05:06,133 !! 2026-03-13T22:05:06,134 ******************************************************************************** 2026-03-13T22:05:06,135 ############################ 2026-03-13T22:05:06,135 # Package would be ignored # 2026-03-13T22:05:06,136 ############################ 2026-03-13T22:05:06,136 Python recognizes 'rna_tools.tools.rna_calc_hbonds.docs' as an importable package[^1], 2026-03-13T22:05:06,136 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,137 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,138 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.docs' is explicitly added 2026-03-13T22:05:06,138 to the `packages` configuration field. 2026-03-13T22:05:06,139 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,140 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,140 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,141 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,142 If you don't want 'rna_tools.tools.rna_calc_hbonds.docs' to be distributed and are 2026-03-13T22:05:06,142 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.docs' via 2026-03-13T22:05:06,142 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,143 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,143 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,144 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,145 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,146 even if it does not contain any `.py` files. 2026-03-13T22:05:06,147 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,147 directory, all directories are treated like packages. 2026-03-13T22:05:06,147 ******************************************************************************** 2026-03-13T22:05:06,148 !! 2026-03-13T22:05:06,149 check.warn(importable) 2026-03-13T22:05:06,149 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,149 !! 2026-03-13T22:05:06,150 ******************************************************************************** 2026-03-13T22:05:06,151 ############################ 2026-03-13T22:05:06,151 # Package would be ignored # 2026-03-13T22:05:06,152 ############################ 2026-03-13T22:05:06,152 Python recognizes 'rna_tools.tools.rna_calc_hbonds.test_data' as an importable package[^1], 2026-03-13T22:05:06,153 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,153 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,154 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.test_data' is explicitly added 2026-03-13T22:05:06,154 to the `packages` configuration field. 2026-03-13T22:05:06,155 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,156 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,156 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,157 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,158 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,159 If you don't want 'rna_tools.tools.rna_calc_hbonds.test_data' to be distributed and are 2026-03-13T22:05:06,159 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.test_data' via 2026-03-13T22:05:06,160 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,160 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,160 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,162 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,163 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,164 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,164 even if it does not contain any `.py` files. 2026-03-13T22:05:06,164 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,165 directory, all directories are treated like packages. 2026-03-13T22:05:06,165 ******************************************************************************** 2026-03-13T22:05:06,166 !! 2026-03-13T22:05:06,166 check.warn(importable) 2026-03-13T22:05:06,167 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.doc' is absent from the `packages` configuration. 2026-03-13T22:05:06,167 !! 2026-03-13T22:05:06,168 ******************************************************************************** 2026-03-13T22:05:06,168 ############################ 2026-03-13T22:05:06,168 # Package would be ignored # 2026-03-13T22:05:06,169 ############################ 2026-03-13T22:05:06,169 Python recognizes 'rna_tools.tools.rna_calc_inf.doc' as an importable package[^1], 2026-03-13T22:05:06,170 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,170 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,171 package, please make sure that 'rna_tools.tools.rna_calc_inf.doc' is explicitly added 2026-03-13T22:05:06,171 to the `packages` configuration field. 2026-03-13T22:05:06,172 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,173 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,173 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,174 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,175 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,176 If you don't want 'rna_tools.tools.rna_calc_inf.doc' to be distributed and are 2026-03-13T22:05:06,176 already explicitly excluding 'rna_tools.tools.rna_calc_inf.doc' via 2026-03-13T22:05:06,177 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,177 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,178 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,179 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,179 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,181 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,181 even if it does not contain any `.py` files. 2026-03-13T22:05:06,182 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,182 directory, all directories are treated like packages. 2026-03-13T22:05:06,183 ******************************************************************************** 2026-03-13T22:05:06,184 !! 2026-03-13T22:05:06,184 check.warn(importable) 2026-03-13T22:05:06,185 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,185 !! 2026-03-13T22:05:06,186 ******************************************************************************** 2026-03-13T22:05:06,187 ############################ 2026-03-13T22:05:06,187 # Package would be ignored # 2026-03-13T22:05:06,188 ############################ 2026-03-13T22:05:06,188 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data' as an importable package[^1], 2026-03-13T22:05:06,188 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,189 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,189 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data' is explicitly added 2026-03-13T22:05:06,190 to the `packages` configuration field. 2026-03-13T22:05:06,190 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,191 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,191 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,192 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,192 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,193 If you don't want 'rna_tools.tools.rna_calc_inf.test_data' to be distributed and are 2026-03-13T22:05:06,194 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data' via 2026-03-13T22:05:06,194 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,194 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,195 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,195 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,196 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,198 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,198 even if it does not contain any `.py` files. 2026-03-13T22:05:06,198 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,199 directory, all directories are treated like packages. 2026-03-13T22:05:06,199 ******************************************************************************** 2026-03-13T22:05:06,200 !! 2026-03-13T22:05:06,200 check.warn(importable) 2026-03-13T22:05:06,201 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data.rp13' is absent from the `packages` configuration. 2026-03-13T22:05:06,201 !! 2026-03-13T22:05:06,202 ******************************************************************************** 2026-03-13T22:05:06,203 ############################ 2026-03-13T22:05:06,203 # Package would be ignored # 2026-03-13T22:05:06,204 ############################ 2026-03-13T22:05:06,204 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data.rp13' as an importable package[^1], 2026-03-13T22:05:06,204 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,205 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,206 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data.rp13' is explicitly added 2026-03-13T22:05:06,206 to the `packages` configuration field. 2026-03-13T22:05:06,207 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,208 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,208 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,209 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,211 If you don't want 'rna_tools.tools.rna_calc_inf.test_data.rp13' to be distributed and are 2026-03-13T22:05:06,212 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data.rp13' via 2026-03-13T22:05:06,212 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,213 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,213 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,216 even if it does not contain any `.py` files. 2026-03-13T22:05:06,217 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,217 directory, all directories are treated like packages. 2026-03-13T22:05:06,218 ******************************************************************************** 2026-03-13T22:05:06,219 !! 2026-03-13T22:05:06,219 check.warn(importable) 2026-03-13T22:05:06,219 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is absent from the `packages` configuration. 2026-03-13T22:05:06,220 !! 2026-03-13T22:05:06,221 ******************************************************************************** 2026-03-13T22:05:06,221 ############################ 2026-03-13T22:05:06,221 # Package would be ignored # 2026-03-13T22:05:06,222 ############################ 2026-03-13T22:05:06,222 Python recognizes 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' as an importable package[^1], 2026-03-13T22:05:06,223 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,224 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,224 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is explicitly added 2026-03-13T22:05:06,225 to the `packages` configuration field. 2026-03-13T22:05:06,225 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,226 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,226 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,227 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,228 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,229 If you don't want 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' to be distributed and are 2026-03-13T22:05:06,230 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' via 2026-03-13T22:05:06,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,231 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,232 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,233 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,235 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,235 even if it does not contain any `.py` files. 2026-03-13T22:05:06,236 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,236 directory, all directories are treated like packages. 2026-03-13T22:05:06,237 ******************************************************************************** 2026-03-13T22:05:06,238 !! 2026-03-13T22:05:06,238 check.warn(importable) 2026-03-13T22:05:06,239 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,239 !! 2026-03-13T22:05:06,240 ******************************************************************************** 2026-03-13T22:05:06,240 ############################ 2026-03-13T22:05:06,240 # Package would be ignored # 2026-03-13T22:05:06,241 ############################ 2026-03-13T22:05:06,241 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data' as an importable package[^1], 2026-03-13T22:05:06,242 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,242 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,243 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data' is explicitly added 2026-03-13T22:05:06,243 to the `packages` configuration field. 2026-03-13T22:05:06,244 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,245 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,245 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,246 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,247 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,248 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data' to be distributed and are 2026-03-13T22:05:06,249 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data' via 2026-03-13T22:05:06,249 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,250 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,251 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,253 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,258 even if it does not contain any `.py` files. 2026-03-13T22:05:06,258 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,259 directory, all directories are treated like packages. 2026-03-13T22:05:06,259 ******************************************************************************** 2026-03-13T22:05:06,260 !! 2026-03-13T22:05:06,261 check.warn(importable) 2026-03-13T22:05:06,262 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is absent from the `packages` configuration. 2026-03-13T22:05:06,262 !! 2026-03-13T22:05:06,263 ******************************************************************************** 2026-03-13T22:05:06,263 ############################ 2026-03-13T22:05:06,264 # Package would be ignored # 2026-03-13T22:05:06,265 ############################ 2026-03-13T22:05:06,265 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.crops' as an importable package[^1], 2026-03-13T22:05:06,266 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,267 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,267 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is explicitly added 2026-03-13T22:05:06,268 to the `packages` configuration field. 2026-03-13T22:05:06,268 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,269 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,269 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,270 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,271 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,271 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.crops' to be distributed and are 2026-03-13T22:05:06,272 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.crops' via 2026-03-13T22:05:06,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,273 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,274 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,276 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,277 even if it does not contain any `.py` files. 2026-03-13T22:05:06,277 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,278 directory, all directories are treated like packages. 2026-03-13T22:05:06,278 ******************************************************************************** 2026-03-13T22:05:06,279 !! 2026-03-13T22:05:06,280 check.warn(importable) 2026-03-13T22:05:06,280 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is absent from the `packages` configuration. 2026-03-13T22:05:06,280 !! 2026-03-13T22:05:06,281 ******************************************************************************** 2026-03-13T22:05:06,282 ############################ 2026-03-13T22:05:06,282 # Package would be ignored # 2026-03-13T22:05:06,283 ############################ 2026-03-13T22:05:06,283 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' as an importable package[^1], 2026-03-13T22:05:06,283 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,284 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,285 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is explicitly added 2026-03-13T22:05:06,285 to the `packages` configuration field. 2026-03-13T22:05:06,286 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,287 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,288 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,289 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,291 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' to be distributed and are 2026-03-13T22:05:06,291 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' via 2026-03-13T22:05:06,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,292 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,293 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,294 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,297 even if it does not contain any `.py` files. 2026-03-13T22:05:06,297 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,297 directory, all directories are treated like packages. 2026-03-13T22:05:06,298 ******************************************************************************** 2026-03-13T22:05:06,299 !! 2026-03-13T22:05:06,299 check.warn(importable) 2026-03-13T22:05:06,299 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is absent from the `packages` configuration. 2026-03-13T22:05:06,300 !! 2026-03-13T22:05:06,300 ******************************************************************************** 2026-03-13T22:05:06,301 ############################ 2026-03-13T22:05:06,301 # Package would be ignored # 2026-03-13T22:05:06,302 ############################ 2026-03-13T22:05:06,302 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' as an importable package[^1], 2026-03-13T22:05:06,302 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,303 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,304 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is explicitly added 2026-03-13T22:05:06,304 to the `packages` configuration field. 2026-03-13T22:05:06,305 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,305 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,306 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,307 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,309 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' to be distributed and are 2026-03-13T22:05:06,309 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' via 2026-03-13T22:05:06,310 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,311 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,312 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,314 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,314 even if it does not contain any `.py` files. 2026-03-13T22:05:06,315 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,315 directory, all directories are treated like packages. 2026-03-13T22:05:06,316 ******************************************************************************** 2026-03-13T22:05:06,317 !! 2026-03-13T22:05:06,318 check.warn(importable) 2026-03-13T22:05:06,319 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is absent from the `packages` configuration. 2026-03-13T22:05:06,320 !! 2026-03-13T22:05:06,321 ******************************************************************************** 2026-03-13T22:05:06,322 ############################ 2026-03-13T22:05:06,322 # Package would be ignored # 2026-03-13T22:05:06,323 ############################ 2026-03-13T22:05:06,324 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.ways' as an importable package[^1], 2026-03-13T22:05:06,324 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,326 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,326 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is explicitly added 2026-03-13T22:05:06,327 to the `packages` configuration field. 2026-03-13T22:05:06,328 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,329 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,329 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,330 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,330 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,331 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.ways' to be distributed and are 2026-03-13T22:05:06,331 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.ways' via 2026-03-13T22:05:06,332 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,332 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,333 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,334 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,335 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,336 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,336 even if it does not contain any `.py` files. 2026-03-13T22:05:06,337 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,337 directory, all directories are treated like packages. 2026-03-13T22:05:06,338 ******************************************************************************** 2026-03-13T22:05:06,339 !! 2026-03-13T22:05:06,339 check.warn(importable) 2026-03-13T22:05:06,340 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_output' is absent from the `packages` configuration. 2026-03-13T22:05:06,340 !! 2026-03-13T22:05:06,341 ******************************************************************************** 2026-03-13T22:05:06,342 ############################ 2026-03-13T22:05:06,342 # Package would be ignored # 2026-03-13T22:05:06,343 ############################ 2026-03-13T22:05:06,343 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_output' as an importable package[^1], 2026-03-13T22:05:06,344 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,345 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,345 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_output' is explicitly added 2026-03-13T22:05:06,346 to the `packages` configuration field. 2026-03-13T22:05:06,347 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,347 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,348 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,348 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,349 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,349 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_output' to be distributed and are 2026-03-13T22:05:06,350 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_output' via 2026-03-13T22:05:06,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,351 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,351 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,352 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,353 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,354 even if it does not contain any `.py` files. 2026-03-13T22:05:06,354 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,354 directory, all directories are treated like packages. 2026-03-13T22:05:06,355 ******************************************************************************** 2026-03-13T22:05:06,356 !! 2026-03-13T22:05:06,356 check.warn(importable) 2026-03-13T22:05:06,356 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is absent from the `packages` configuration. 2026-03-13T22:05:06,357 !! 2026-03-13T22:05:06,358 ******************************************************************************** 2026-03-13T22:05:06,358 ############################ 2026-03-13T22:05:06,359 # Package would be ignored # 2026-03-13T22:05:06,359 ############################ 2026-03-13T22:05:06,359 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' as an importable package[^1], 2026-03-13T22:05:06,360 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,361 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,362 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is explicitly added 2026-03-13T22:05:06,362 to the `packages` configuration field. 2026-03-13T22:05:06,363 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,364 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,364 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,365 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,366 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,368 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' to be distributed and are 2026-03-13T22:05:06,368 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' via 2026-03-13T22:05:06,369 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,370 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,372 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,373 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,375 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,376 even if it does not contain any `.py` files. 2026-03-13T22:05:06,376 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,377 directory, all directories are treated like packages. 2026-03-13T22:05:06,377 ******************************************************************************** 2026-03-13T22:05:06,378 !! 2026-03-13T22:05:06,378 check.warn(importable) 2026-03-13T22:05:06,378 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,379 !! 2026-03-13T22:05:06,380 ******************************************************************************** 2026-03-13T22:05:06,380 ############################ 2026-03-13T22:05:06,380 # Package would be ignored # 2026-03-13T22:05:06,381 ############################ 2026-03-13T22:05:06,381 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' as an importable package[^1], 2026-03-13T22:05:06,382 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,382 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,383 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is explicitly added 2026-03-13T22:05:06,383 to the `packages` configuration field. 2026-03-13T22:05:06,384 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,385 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,385 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,386 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,387 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,388 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' to be distributed and are 2026-03-13T22:05:06,388 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' via 2026-03-13T22:05:06,389 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,389 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,390 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,391 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,392 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,393 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,393 even if it does not contain any `.py` files. 2026-03-13T22:05:06,394 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,394 directory, all directories are treated like packages. 2026-03-13T22:05:06,395 ******************************************************************************** 2026-03-13T22:05:06,395 !! 2026-03-13T22:05:06,396 check.warn(importable) 2026-03-13T22:05:06,396 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_filter.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,397 !! 2026-03-13T22:05:06,398 ******************************************************************************** 2026-03-13T22:05:06,399 ############################ 2026-03-13T22:05:06,399 # Package would be ignored # 2026-03-13T22:05:06,400 ############################ 2026-03-13T22:05:06,400 Python recognizes 'rna_tools.tools.rna_filter.test_data' as an importable package[^1], 2026-03-13T22:05:06,401 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,402 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,402 package, please make sure that 'rna_tools.tools.rna_filter.test_data' is explicitly added 2026-03-13T22:05:06,402 to the `packages` configuration field. 2026-03-13T22:05:06,403 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,403 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,404 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,404 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,405 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,406 If you don't want 'rna_tools.tools.rna_filter.test_data' to be distributed and are 2026-03-13T22:05:06,406 already explicitly excluding 'rna_tools.tools.rna_filter.test_data' via 2026-03-13T22:05:06,406 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,407 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,407 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,408 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,410 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,411 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,412 even if it does not contain any `.py` files. 2026-03-13T22:05:06,412 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,413 directory, all directories are treated like packages. 2026-03-13T22:05:06,413 ******************************************************************************** 2026-03-13T22:05:06,414 !! 2026-03-13T22:05:06,415 check.warn(importable) 2026-03-13T22:05:06,415 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_get_restraints' is absent from the `packages` configuration. 2026-03-13T22:05:06,416 !! 2026-03-13T22:05:06,417 ******************************************************************************** 2026-03-13T22:05:06,417 ############################ 2026-03-13T22:05:06,418 # Package would be ignored # 2026-03-13T22:05:06,418 ############################ 2026-03-13T22:05:06,419 Python recognizes 'rna_tools.tools.rna_get_restraints' as an importable package[^1], 2026-03-13T22:05:06,419 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,420 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,421 package, please make sure that 'rna_tools.tools.rna_get_restraints' is explicitly added 2026-03-13T22:05:06,421 to the `packages` configuration field. 2026-03-13T22:05:06,422 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,423 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,423 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,425 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,425 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,426 If you don't want 'rna_tools.tools.rna_get_restraints' to be distributed and are 2026-03-13T22:05:06,426 already explicitly excluding 'rna_tools.tools.rna_get_restraints' via 2026-03-13T22:05:06,426 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,427 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,427 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,428 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,429 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,430 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,430 even if it does not contain any `.py` files. 2026-03-13T22:05:06,430 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,431 directory, all directories are treated like packages. 2026-03-13T22:05:06,431 ******************************************************************************** 2026-03-13T22:05:06,432 !! 2026-03-13T22:05:06,432 check.warn(importable) 2026-03-13T22:05:06,433 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.doc' is absent from the `packages` configuration. 2026-03-13T22:05:06,433 !! 2026-03-13T22:05:06,435 ******************************************************************************** 2026-03-13T22:05:06,435 ############################ 2026-03-13T22:05:06,436 # Package would be ignored # 2026-03-13T22:05:06,436 ############################ 2026-03-13T22:05:06,437 Python recognizes 'rna_tools.tools.rna_helix_vis.doc' as an importable package[^1], 2026-03-13T22:05:06,437 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,438 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,439 package, please make sure that 'rna_tools.tools.rna_helix_vis.doc' is explicitly added 2026-03-13T22:05:06,439 to the `packages` configuration field. 2026-03-13T22:05:06,440 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,441 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,441 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,442 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,443 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,444 If you don't want 'rna_tools.tools.rna_helix_vis.doc' to be distributed and are 2026-03-13T22:05:06,444 already explicitly excluding 'rna_tools.tools.rna_helix_vis.doc' via 2026-03-13T22:05:06,445 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,445 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,445 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,446 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,447 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,449 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,449 even if it does not contain any `.py` files. 2026-03-13T22:05:06,450 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,451 directory, all directories are treated like packages. 2026-03-13T22:05:06,451 ******************************************************************************** 2026-03-13T22:05:06,452 !! 2026-03-13T22:05:06,452 check.warn(importable) 2026-03-13T22:05:06,452 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,453 !! 2026-03-13T22:05:06,453 ******************************************************************************** 2026-03-13T22:05:06,453 ############################ 2026-03-13T22:05:06,454 # Package would be ignored # 2026-03-13T22:05:06,454 ############################ 2026-03-13T22:05:06,454 Python recognizes 'rna_tools.tools.rna_helix_vis.test_data' as an importable package[^1], 2026-03-13T22:05:06,455 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,456 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,456 package, please make sure that 'rna_tools.tools.rna_helix_vis.test_data' is explicitly added 2026-03-13T22:05:06,456 to the `packages` configuration field. 2026-03-13T22:05:06,457 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,457 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,458 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,459 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,460 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,461 If you don't want 'rna_tools.tools.rna_helix_vis.test_data' to be distributed and are 2026-03-13T22:05:06,461 already explicitly excluding 'rna_tools.tools.rna_helix_vis.test_data' via 2026-03-13T22:05:06,462 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,462 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,463 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,464 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,465 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,466 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,467 even if it does not contain any `.py` files. 2026-03-13T22:05:06,467 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,468 directory, all directories are treated like packages. 2026-03-13T22:05:06,468 ******************************************************************************** 2026-03-13T22:05:06,469 !! 2026-03-13T22:05:06,469 check.warn(importable) 2026-03-13T22:05:06,470 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels' is absent from the `packages` configuration. 2026-03-13T22:05:06,470 !! 2026-03-13T22:05:06,471 ******************************************************************************** 2026-03-13T22:05:06,472 ############################ 2026-03-13T22:05:06,472 # Package would be ignored # 2026-03-13T22:05:06,473 ############################ 2026-03-13T22:05:06,473 Python recognizes 'rna_tools.tools.rna_multimodels' as an importable package[^1], 2026-03-13T22:05:06,474 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,476 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,476 package, please make sure that 'rna_tools.tools.rna_multimodels' is explicitly added 2026-03-13T22:05:06,477 to the `packages` configuration field. 2026-03-13T22:05:06,478 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,478 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,479 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,480 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,481 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,482 If you don't want 'rna_tools.tools.rna_multimodels' to be distributed and are 2026-03-13T22:05:06,483 already explicitly excluding 'rna_tools.tools.rna_multimodels' via 2026-03-13T22:05:06,483 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,484 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,484 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,486 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,487 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,489 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,489 even if it does not contain any `.py` files. 2026-03-13T22:05:06,490 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,490 directory, all directories are treated like packages. 2026-03-13T22:05:06,490 ******************************************************************************** 2026-03-13T22:05:06,491 !! 2026-03-13T22:05:06,492 check.warn(importable) 2026-03-13T22:05:06,492 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.data' is absent from the `packages` configuration. 2026-03-13T22:05:06,493 !! 2026-03-13T22:05:06,494 ******************************************************************************** 2026-03-13T22:05:06,495 ############################ 2026-03-13T22:05:06,495 # Package would be ignored # 2026-03-13T22:05:06,496 ############################ 2026-03-13T22:05:06,497 Python recognizes 'rna_tools.tools.rna_multimodels.data' as an importable package[^1], 2026-03-13T22:05:06,497 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,498 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,499 package, please make sure that 'rna_tools.tools.rna_multimodels.data' is explicitly added 2026-03-13T22:05:06,499 to the `packages` configuration field. 2026-03-13T22:05:06,500 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,500 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,501 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,502 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,503 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,505 If you don't want 'rna_tools.tools.rna_multimodels.data' to be distributed and are 2026-03-13T22:05:06,506 already explicitly excluding 'rna_tools.tools.rna_multimodels.data' via 2026-03-13T22:05:06,506 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,507 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,508 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,510 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,511 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,512 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,512 even if it does not contain any `.py` files. 2026-03-13T22:05:06,513 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,513 directory, all directories are treated like packages. 2026-03-13T22:05:06,513 ******************************************************************************** 2026-03-13T22:05:06,514 !! 2026-03-13T22:05:06,514 check.warn(importable) 2026-03-13T22:05:06,515 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_in' is absent from the `packages` configuration. 2026-03-13T22:05:06,515 !! 2026-03-13T22:05:06,516 ******************************************************************************** 2026-03-13T22:05:06,516 ############################ 2026-03-13T22:05:06,517 # Package would be ignored # 2026-03-13T22:05:06,517 ############################ 2026-03-13T22:05:06,517 Python recognizes 'rna_tools.tools.rna_multimodels.test_in' as an importable package[^1], 2026-03-13T22:05:06,518 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,519 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,519 package, please make sure that 'rna_tools.tools.rna_multimodels.test_in' is explicitly added 2026-03-13T22:05:06,519 to the `packages` configuration field. 2026-03-13T22:05:06,520 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,521 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,521 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,522 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,523 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,524 If you don't want 'rna_tools.tools.rna_multimodels.test_in' to be distributed and are 2026-03-13T22:05:06,525 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_in' via 2026-03-13T22:05:06,525 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,526 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,526 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,527 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,528 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,529 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,530 even if it does not contain any `.py` files. 2026-03-13T22:05:06,530 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,531 directory, all directories are treated like packages. 2026-03-13T22:05:06,531 ******************************************************************************** 2026-03-13T22:05:06,533 !! 2026-03-13T22:05:06,533 check.warn(importable) 2026-03-13T22:05:06,534 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_out' is absent from the `packages` configuration. 2026-03-13T22:05:06,534 !! 2026-03-13T22:05:06,535 ******************************************************************************** 2026-03-13T22:05:06,535 ############################ 2026-03-13T22:05:06,536 # Package would be ignored # 2026-03-13T22:05:06,536 ############################ 2026-03-13T22:05:06,536 Python recognizes 'rna_tools.tools.rna_multimodels.test_out' as an importable package[^1], 2026-03-13T22:05:06,537 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,537 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,538 package, please make sure that 'rna_tools.tools.rna_multimodels.test_out' is explicitly added 2026-03-13T22:05:06,538 to the `packages` configuration field. 2026-03-13T22:05:06,539 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,539 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,540 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,540 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,541 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,542 If you don't want 'rna_tools.tools.rna_multimodels.test_out' to be distributed and are 2026-03-13T22:05:06,542 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_out' via 2026-03-13T22:05:06,543 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,543 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,544 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,545 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,546 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,547 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,548 even if it does not contain any `.py` files. 2026-03-13T22:05:06,548 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,549 directory, all directories are treated like packages. 2026-03-13T22:05:06,550 ******************************************************************************** 2026-03-13T22:05:06,551 !! 2026-03-13T22:05:06,552 check.warn(importable) 2026-03-13T22:05:06,552 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,553 !! 2026-03-13T22:05:06,554 ******************************************************************************** 2026-03-13T22:05:06,555 ############################ 2026-03-13T22:05:06,555 # Package would be ignored # 2026-03-13T22:05:06,556 ############################ 2026-03-13T22:05:06,556 Python recognizes 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' as an importable package[^1], 2026-03-13T22:05:06,557 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,558 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,558 package, please make sure that 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is explicitly added 2026-03-13T22:05:06,559 to the `packages` configuration field. 2026-03-13T22:05:06,560 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,561 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,562 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,563 If you don't want 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' to be distributed and are 2026-03-13T22:05:06,563 already explicitly excluding 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' via 2026-03-13T22:05:06,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,564 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,564 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,565 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,566 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,567 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,568 even if it does not contain any `.py` files. 2026-03-13T22:05:06,568 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,568 directory, all directories are treated like packages. 2026-03-13T22:05:06,569 ******************************************************************************** 2026-03-13T22:05:06,570 !! 2026-03-13T22:05:06,570 check.warn(importable) 2026-03-13T22:05:06,570 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,571 !! 2026-03-13T22:05:06,572 ******************************************************************************** 2026-03-13T22:05:06,572 ############################ 2026-03-13T22:05:06,573 # Package would be ignored # 2026-03-13T22:05:06,573 ############################ 2026-03-13T22:05:06,574 Python recognizes 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' as an importable package[^1], 2026-03-13T22:05:06,574 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,575 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,575 package, please make sure that 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is explicitly added 2026-03-13T22:05:06,576 to the `packages` configuration field. 2026-03-13T22:05:06,577 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,578 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,579 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,580 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,581 If you don't want 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' to be distributed and are 2026-03-13T22:05:06,581 already explicitly excluding 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' via 2026-03-13T22:05:06,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,582 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,583 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,584 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,585 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,586 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,586 even if it does not contain any `.py` files. 2026-03-13T22:05:06,587 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,587 directory, all directories are treated like packages. 2026-03-13T22:05:06,588 ******************************************************************************** 2026-03-13T22:05:06,588 !! 2026-03-13T22:05:06,589 check.warn(importable) 2026-03-13T22:05:06,589 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_prediction_significance.opt' is absent from the `packages` configuration. 2026-03-13T22:05:06,590 !! 2026-03-13T22:05:06,590 ******************************************************************************** 2026-03-13T22:05:06,591 ############################ 2026-03-13T22:05:06,591 # Package would be ignored # 2026-03-13T22:05:06,591 ############################ 2026-03-13T22:05:06,592 Python recognizes 'rna_tools.tools.rna_prediction_significance.opt' as an importable package[^1], 2026-03-13T22:05:06,592 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,593 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,593 package, please make sure that 'rna_tools.tools.rna_prediction_significance.opt' is explicitly added 2026-03-13T22:05:06,594 to the `packages` configuration field. 2026-03-13T22:05:06,594 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,595 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,595 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,596 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,597 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,598 If you don't want 'rna_tools.tools.rna_prediction_significance.opt' to be distributed and are 2026-03-13T22:05:06,599 already explicitly excluding 'rna_tools.tools.rna_prediction_significance.opt' via 2026-03-13T22:05:06,599 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,600 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,600 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,601 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,602 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,603 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,604 even if it does not contain any `.py` files. 2026-03-13T22:05:06,604 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,605 directory, all directories are treated like packages. 2026-03-13T22:05:06,605 ******************************************************************************** 2026-03-13T22:05:06,606 !! 2026-03-13T22:05:06,607 check.warn(importable) 2026-03-13T22:05:06,607 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_refinement.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,608 !! 2026-03-13T22:05:06,609 ******************************************************************************** 2026-03-13T22:05:06,609 ############################ 2026-03-13T22:05:06,610 # Package would be ignored # 2026-03-13T22:05:06,610 ############################ 2026-03-13T22:05:06,610 Python recognizes 'rna_tools.tools.rna_refinement.test_data' as an importable package[^1], 2026-03-13T22:05:06,610 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,611 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,611 package, please make sure that 'rna_tools.tools.rna_refinement.test_data' is explicitly added 2026-03-13T22:05:06,612 to the `packages` configuration field. 2026-03-13T22:05:06,612 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,613 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,613 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,614 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,615 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,616 If you don't want 'rna_tools.tools.rna_refinement.test_data' to be distributed and are 2026-03-13T22:05:06,616 already explicitly excluding 'rna_tools.tools.rna_refinement.test_data' via 2026-03-13T22:05:06,616 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,617 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,617 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,618 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,619 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,620 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,621 even if it does not contain any `.py` files. 2026-03-13T22:05:06,621 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,622 directory, all directories are treated like packages. 2026-03-13T22:05:06,622 ******************************************************************************** 2026-03-13T22:05:06,623 !! 2026-03-13T22:05:06,624 check.warn(importable) 2026-03-13T22:05:06,624 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rfam' is absent from the `packages` configuration. 2026-03-13T22:05:06,625 !! 2026-03-13T22:05:06,626 ******************************************************************************** 2026-03-13T22:05:06,626 ############################ 2026-03-13T22:05:06,627 # Package would be ignored # 2026-03-13T22:05:06,627 ############################ 2026-03-13T22:05:06,628 Python recognizes 'rna_tools.tools.rna_rfam' as an importable package[^1], 2026-03-13T22:05:06,628 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,629 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,630 package, please make sure that 'rna_tools.tools.rna_rfam' is explicitly added 2026-03-13T22:05:06,630 to the `packages` configuration field. 2026-03-13T22:05:06,631 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,632 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,632 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,633 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,635 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,635 If you don't want 'rna_tools.tools.rna_rfam' to be distributed and are 2026-03-13T22:05:06,636 already explicitly excluding 'rna_tools.tools.rna_rfam' via 2026-03-13T22:05:06,636 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,636 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,637 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,637 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,638 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,639 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,639 even if it does not contain any `.py` files. 2026-03-13T22:05:06,640 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,640 directory, all directories are treated like packages. 2026-03-13T22:05:06,640 ******************************************************************************** 2026-03-13T22:05:06,641 !! 2026-03-13T22:05:06,641 check.warn(importable) 2026-03-13T22:05:06,642 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,642 !! 2026-03-13T22:05:06,643 ******************************************************************************** 2026-03-13T22:05:06,644 ############################ 2026-03-13T22:05:06,644 # Package would be ignored # 2026-03-13T22:05:06,645 ############################ 2026-03-13T22:05:06,645 Python recognizes 'rna_tools.tools.rna_rosetta.test_data' as an importable package[^1], 2026-03-13T22:05:06,646 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,647 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,648 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data' is explicitly added 2026-03-13T22:05:06,648 to the `packages` configuration field. 2026-03-13T22:05:06,649 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,650 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,651 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,652 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,652 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,653 If you don't want 'rna_tools.tools.rna_rosetta.test_data' to be distributed and are 2026-03-13T22:05:06,654 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data' via 2026-03-13T22:05:06,654 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,655 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,656 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,657 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,659 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,659 even if it does not contain any `.py` files. 2026-03-13T22:05:06,660 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,660 directory, all directories are treated like packages. 2026-03-13T22:05:06,661 ******************************************************************************** 2026-03-13T22:05:06,662 !! 2026-03-13T22:05:06,662 check.warn(importable) 2026-03-13T22:05:06,663 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data.tl' is absent from the `packages` configuration. 2026-03-13T22:05:06,663 !! 2026-03-13T22:05:06,664 ******************************************************************************** 2026-03-13T22:05:06,665 ############################ 2026-03-13T22:05:06,665 # Package would be ignored # 2026-03-13T22:05:06,666 ############################ 2026-03-13T22:05:06,666 Python recognizes 'rna_tools.tools.rna_rosetta.test_data.tl' as an importable package[^1], 2026-03-13T22:05:06,667 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,668 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,668 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data.tl' is explicitly added 2026-03-13T22:05:06,669 to the `packages` configuration field. 2026-03-13T22:05:06,670 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,670 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,671 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,672 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,674 If you don't want 'rna_tools.tools.rna_rosetta.test_data.tl' to be distributed and are 2026-03-13T22:05:06,674 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data.tl' via 2026-03-13T22:05:06,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,676 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,677 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,679 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,681 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,681 even if it does not contain any `.py` files. 2026-03-13T22:05:06,682 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,682 directory, all directories are treated like packages. 2026-03-13T22:05:06,683 ******************************************************************************** 2026-03-13T22:05:06,684 !! 2026-03-13T22:05:06,685 check.warn(importable) 2026-03-13T22:05:06,685 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_sali2dotbracket.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,686 !! 2026-03-13T22:05:06,687 ******************************************************************************** 2026-03-13T22:05:06,688 ############################ 2026-03-13T22:05:06,688 # Package would be ignored # 2026-03-13T22:05:06,689 ############################ 2026-03-13T22:05:06,690 Python recognizes 'rna_tools.tools.rna_sali2dotbracket.test_data' as an importable package[^1], 2026-03-13T22:05:06,691 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,692 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,693 package, please make sure that 'rna_tools.tools.rna_sali2dotbracket.test_data' is explicitly added 2026-03-13T22:05:06,693 to the `packages` configuration field. 2026-03-13T22:05:06,694 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,695 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,696 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,697 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,698 If you don't want 'rna_tools.tools.rna_sali2dotbracket.test_data' to be distributed and are 2026-03-13T22:05:06,698 already explicitly excluding 'rna_tools.tools.rna_sali2dotbracket.test_data' via 2026-03-13T22:05:06,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,699 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,700 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,701 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,702 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,703 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,704 even if it does not contain any `.py` files. 2026-03-13T22:05:06,704 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,705 directory, all directories are treated like packages. 2026-03-13T22:05:06,706 ******************************************************************************** 2026-03-13T22:05:06,707 !! 2026-03-13T22:05:06,708 check.warn(importable) 2026-03-13T22:05:06,708 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_seq_identity' is absent from the `packages` configuration. 2026-03-13T22:05:06,709 !! 2026-03-13T22:05:06,710 ******************************************************************************** 2026-03-13T22:05:06,711 ############################ 2026-03-13T22:05:06,711 # Package would be ignored # 2026-03-13T22:05:06,712 ############################ 2026-03-13T22:05:06,713 Python recognizes 'rna_tools.tools.rna_seq_identity' as an importable package[^1], 2026-03-13T22:05:06,713 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,714 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,715 package, please make sure that 'rna_tools.tools.rna_seq_identity' is explicitly added 2026-03-13T22:05:06,715 to the `packages` configuration field. 2026-03-13T22:05:06,717 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,717 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,718 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,720 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,721 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,723 If you don't want 'rna_tools.tools.rna_seq_identity' to be distributed and are 2026-03-13T22:05:06,723 already explicitly excluding 'rna_tools.tools.rna_seq_identity' via 2026-03-13T22:05:06,724 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,725 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,726 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,727 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,728 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,729 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,729 even if it does not contain any `.py` files. 2026-03-13T22:05:06,730 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,731 directory, all directories are treated like packages. 2026-03-13T22:05:06,731 ******************************************************************************** 2026-03-13T22:05:06,732 !! 2026-03-13T22:05:06,733 check.warn(importable) 2026-03-13T22:05:06,733 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_x3dna.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,734 !! 2026-03-13T22:05:06,735 ******************************************************************************** 2026-03-13T22:05:06,736 ############################ 2026-03-13T22:05:06,736 # Package would be ignored # 2026-03-13T22:05:06,737 ############################ 2026-03-13T22:05:06,737 Python recognizes 'rna_tools.tools.rna_x3dna.test_data' as an importable package[^1], 2026-03-13T22:05:06,738 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,739 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,740 package, please make sure that 'rna_tools.tools.rna_x3dna.test_data' is explicitly added 2026-03-13T22:05:06,740 to the `packages` configuration field. 2026-03-13T22:05:06,742 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,742 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,743 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,745 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,746 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,747 If you don't want 'rna_tools.tools.rna_x3dna.test_data' to be distributed and are 2026-03-13T22:05:06,748 already explicitly excluding 'rna_tools.tools.rna_x3dna.test_data' via 2026-03-13T22:05:06,749 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,749 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,750 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,751 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,752 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,754 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,755 even if it does not contain any `.py` files. 2026-03-13T22:05:06,755 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,756 directory, all directories are treated like packages. 2026-03-13T22:05:06,756 ******************************************************************************** 2026-03-13T22:05:06,758 !! 2026-03-13T22:05:06,759 check.warn(importable) 2026-03-13T22:05:06,759 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender' is absent from the `packages` configuration. 2026-03-13T22:05:06,760 !! 2026-03-13T22:05:06,761 ******************************************************************************** 2026-03-13T22:05:06,762 ############################ 2026-03-13T22:05:06,762 # Package would be ignored # 2026-03-13T22:05:06,762 ############################ 2026-03-13T22:05:06,763 Python recognizes 'rna_tools.tools.rnapuzzle_sender' as an importable package[^1], 2026-03-13T22:05:06,763 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,764 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,764 package, please make sure that 'rna_tools.tools.rnapuzzle_sender' is explicitly added 2026-03-13T22:05:06,764 to the `packages` configuration field. 2026-03-13T22:05:06,765 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,765 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,766 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,766 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,767 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,768 If you don't want 'rna_tools.tools.rnapuzzle_sender' to be distributed and are 2026-03-13T22:05:06,768 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender' via 2026-03-13T22:05:06,769 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,769 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,770 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,770 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,771 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,773 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,773 even if it does not contain any `.py` files. 2026-03-13T22:05:06,774 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,774 directory, all directories are treated like packages. 2026-03-13T22:05:06,774 ******************************************************************************** 2026-03-13T22:05:06,775 !! 2026-03-13T22:05:06,776 check.warn(importable) 2026-03-13T22:05:06,776 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.files' is absent from the `packages` configuration. 2026-03-13T22:05:06,777 !! 2026-03-13T22:05:06,778 ******************************************************************************** 2026-03-13T22:05:06,778 ############################ 2026-03-13T22:05:06,779 # Package would be ignored # 2026-03-13T22:05:06,779 ############################ 2026-03-13T22:05:06,780 Python recognizes 'rna_tools.tools.rnapuzzle_sender.files' as an importable package[^1], 2026-03-13T22:05:06,780 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,781 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,781 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.files' is explicitly added 2026-03-13T22:05:06,782 to the `packages` configuration field. 2026-03-13T22:05:06,783 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,783 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,784 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,785 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,786 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,786 If you don't want 'rna_tools.tools.rnapuzzle_sender.files' to be distributed and are 2026-03-13T22:05:06,787 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.files' via 2026-03-13T22:05:06,787 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,787 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,788 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,788 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,789 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,790 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,791 even if it does not contain any `.py` files. 2026-03-13T22:05:06,791 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,791 directory, all directories are treated like packages. 2026-03-13T22:05:06,792 ******************************************************************************** 2026-03-13T22:05:06,792 !! 2026-03-13T22:05:06,793 check.warn(importable) 2026-03-13T22:05:06,794 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is absent from the `packages` configuration. 2026-03-13T22:05:06,794 !! 2026-03-13T22:05:06,795 ******************************************************************************** 2026-03-13T22:05:06,795 ############################ 2026-03-13T22:05:06,796 # Package would be ignored # 2026-03-13T22:05:06,796 ############################ 2026-03-13T22:05:06,797 Python recognizes 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' as an importable package[^1], 2026-03-13T22:05:06,797 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,798 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,799 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is explicitly added 2026-03-13T22:05:06,799 to the `packages` configuration field. 2026-03-13T22:05:06,800 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,801 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,801 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,802 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,803 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,804 If you don't want 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' to be distributed and are 2026-03-13T22:05:06,804 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' via 2026-03-13T22:05:06,805 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,805 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,806 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,807 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,808 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,810 even if it does not contain any `.py` files. 2026-03-13T22:05:06,811 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,811 directory, all directories are treated like packages. 2026-03-13T22:05:06,811 ******************************************************************************** 2026-03-13T22:05:06,812 !! 2026-03-13T22:05:06,812 check.warn(importable) 2026-03-13T22:05:06,813 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii' is absent from the `packages` configuration. 2026-03-13T22:05:06,813 !! 2026-03-13T22:05:06,814 ******************************************************************************** 2026-03-13T22:05:06,814 ############################ 2026-03-13T22:05:06,814 # Package would be ignored # 2026-03-13T22:05:06,815 ############################ 2026-03-13T22:05:06,815 Python recognizes 'rna_tools.tools.rnashape2ascii' as an importable package[^1], 2026-03-13T22:05:06,815 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,816 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,816 package, please make sure that 'rna_tools.tools.rnashape2ascii' is explicitly added 2026-03-13T22:05:06,817 to the `packages` configuration field. 2026-03-13T22:05:06,818 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,818 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,819 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,820 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,821 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,822 If you don't want 'rna_tools.tools.rnashape2ascii' to be distributed and are 2026-03-13T22:05:06,822 already explicitly excluding 'rna_tools.tools.rnashape2ascii' via 2026-03-13T22:05:06,823 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,823 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,824 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,825 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,826 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,827 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,828 even if it does not contain any `.py` files. 2026-03-13T22:05:06,828 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,829 directory, all directories are treated like packages. 2026-03-13T22:05:06,829 ******************************************************************************** 2026-03-13T22:05:06,830 !! 2026-03-13T22:05:06,830 check.warn(importable) 2026-03-13T22:05:06,831 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,831 !! 2026-03-13T22:05:06,832 ******************************************************************************** 2026-03-13T22:05:06,833 ############################ 2026-03-13T22:05:06,833 # Package would be ignored # 2026-03-13T22:05:06,834 ############################ 2026-03-13T22:05:06,834 Python recognizes 'rna_tools.tools.rnashape2ascii.test_data' as an importable package[^1], 2026-03-13T22:05:06,835 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,836 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,836 package, please make sure that 'rna_tools.tools.rnashape2ascii.test_data' is explicitly added 2026-03-13T22:05:06,836 to the `packages` configuration field. 2026-03-13T22:05:06,837 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,837 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,838 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,838 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,839 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,840 If you don't want 'rna_tools.tools.rnashape2ascii.test_data' to be distributed and are 2026-03-13T22:05:06,840 already explicitly excluding 'rna_tools.tools.rnashape2ascii.test_data' via 2026-03-13T22:05:06,840 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,841 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,842 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,843 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,845 even if it does not contain any `.py` files. 2026-03-13T22:05:06,846 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,846 directory, all directories are treated like packages. 2026-03-13T22:05:06,847 ******************************************************************************** 2026-03-13T22:05:06,848 !! 2026-03-13T22:05:06,849 check.warn(importable) 2026-03-13T22:05:06,849 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare' is absent from the `packages` configuration. 2026-03-13T22:05:06,850 !! 2026-03-13T22:05:06,851 ******************************************************************************** 2026-03-13T22:05:06,851 ############################ 2026-03-13T22:05:06,852 # Package would be ignored # 2026-03-13T22:05:06,852 ############################ 2026-03-13T22:05:06,853 Python recognizes 'rna_tools.tools.sandbox.rna_compare' as an importable package[^1], 2026-03-13T22:05:06,853 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,854 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,855 package, please make sure that 'rna_tools.tools.sandbox.rna_compare' is explicitly added 2026-03-13T22:05:06,855 to the `packages` configuration field. 2026-03-13T22:05:06,856 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,857 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,858 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,859 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,860 If you don't want 'rna_tools.tools.sandbox.rna_compare' to be distributed and are 2026-03-13T22:05:06,861 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare' via 2026-03-13T22:05:06,861 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,862 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,862 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,863 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,863 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,864 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,865 even if it does not contain any `.py` files. 2026-03-13T22:05:06,865 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,865 directory, all directories are treated like packages. 2026-03-13T22:05:06,866 ******************************************************************************** 2026-03-13T22:05:06,866 !! 2026-03-13T22:05:06,867 check.warn(importable) 2026-03-13T22:05:06,867 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,867 !! 2026-03-13T22:05:06,868 ******************************************************************************** 2026-03-13T22:05:06,869 ############################ 2026-03-13T22:05:06,869 # Package would be ignored # 2026-03-13T22:05:06,870 ############################ 2026-03-13T22:05:06,870 Python recognizes 'rna_tools.tools.sandbox.rna_compare.test_data' as an importable package[^1], 2026-03-13T22:05:06,871 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,872 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,873 package, please make sure that 'rna_tools.tools.sandbox.rna_compare.test_data' is explicitly added 2026-03-13T22:05:06,873 to the `packages` configuration field. 2026-03-13T22:05:06,874 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,875 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,876 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,877 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,878 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,879 If you don't want 'rna_tools.tools.sandbox.rna_compare.test_data' to be distributed and are 2026-03-13T22:05:06,880 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare.test_data' via 2026-03-13T22:05:06,880 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,880 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,881 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,882 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,883 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,884 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,885 even if it does not contain any `.py` files. 2026-03-13T22:05:06,885 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,886 directory, all directories are treated like packages. 2026-03-13T22:05:06,886 ******************************************************************************** 2026-03-13T22:05:06,888 !! 2026-03-13T22:05:06,888 check.warn(importable) 2026-03-13T22:05:06,888 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.simrna_trajectory.test_data' is absent from the `packages` configuration. 2026-03-13T22:05:06,889 !! 2026-03-13T22:05:06,889 ******************************************************************************** 2026-03-13T22:05:06,889 ############################ 2026-03-13T22:05:06,890 # Package would be ignored # 2026-03-13T22:05:06,890 ############################ 2026-03-13T22:05:06,890 Python recognizes 'rna_tools.tools.simrna_trajectory.test_data' as an importable package[^1], 2026-03-13T22:05:06,891 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,892 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,892 package, please make sure that 'rna_tools.tools.simrna_trajectory.test_data' is explicitly added 2026-03-13T22:05:06,892 to the `packages` configuration field. 2026-03-13T22:05:06,893 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,893 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,894 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,894 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,895 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,896 If you don't want 'rna_tools.tools.simrna_trajectory.test_data' to be distributed and are 2026-03-13T22:05:06,896 already explicitly excluding 'rna_tools.tools.simrna_trajectory.test_data' via 2026-03-13T22:05:06,897 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,897 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,898 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,899 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,900 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,901 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,902 even if it does not contain any `.py` files. 2026-03-13T22:05:06,902 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,903 directory, all directories are treated like packages. 2026-03-13T22:05:06,904 ******************************************************************************** 2026-03-13T22:05:06,904 !! 2026-03-13T22:05:06,905 check.warn(importable) 2026-03-13T22:05:06,905 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility' is absent from the `packages` configuration. 2026-03-13T22:05:06,906 !! 2026-03-13T22:05:06,906 ******************************************************************************** 2026-03-13T22:05:06,907 ############################ 2026-03-13T22:05:06,907 # Package would be ignored # 2026-03-13T22:05:06,908 ############################ 2026-03-13T22:05:06,908 Python recognizes 'rna_tools.tools.triplexibility' as an importable package[^1], 2026-03-13T22:05:06,909 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,910 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,910 package, please make sure that 'rna_tools.tools.triplexibility' is explicitly added 2026-03-13T22:05:06,911 to the `packages` configuration field. 2026-03-13T22:05:06,912 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,912 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,913 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,913 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,914 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,915 If you don't want 'rna_tools.tools.triplexibility' to be distributed and are 2026-03-13T22:05:06,915 already explicitly excluding 'rna_tools.tools.triplexibility' via 2026-03-13T22:05:06,915 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,916 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,916 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,917 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,918 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,919 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,919 even if it does not contain any `.py` files. 2026-03-13T22:05:06,920 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,920 directory, all directories are treated like packages. 2026-03-13T22:05:06,921 ******************************************************************************** 2026-03-13T22:05:06,921 !! 2026-03-13T22:05:06,922 check.warn(importable) 2026-03-13T22:05:06,922 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.data' is absent from the `packages` configuration. 2026-03-13T22:05:06,923 !! 2026-03-13T22:05:06,924 ******************************************************************************** 2026-03-13T22:05:06,925 ############################ 2026-03-13T22:05:06,925 # Package would be ignored # 2026-03-13T22:05:06,926 ############################ 2026-03-13T22:05:06,926 Python recognizes 'rna_tools.tools.triplexibility.data' as an importable package[^1], 2026-03-13T22:05:06,927 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,928 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,929 package, please make sure that 'rna_tools.tools.triplexibility.data' is explicitly added 2026-03-13T22:05:06,929 to the `packages` configuration field. 2026-03-13T22:05:06,931 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,931 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,932 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,933 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,934 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,935 If you don't want 'rna_tools.tools.triplexibility.data' to be distributed and are 2026-03-13T22:05:06,935 already explicitly excluding 'rna_tools.tools.triplexibility.data' via 2026-03-13T22:05:06,936 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,936 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,937 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,938 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,939 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,940 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,941 even if it does not contain any `.py` files. 2026-03-13T22:05:06,941 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,941 directory, all directories are treated like packages. 2026-03-13T22:05:06,942 ******************************************************************************** 2026-03-13T22:05:06,942 !! 2026-03-13T22:05:06,943 check.warn(importable) 2026-03-13T22:05:06,943 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.db' is absent from the `packages` configuration. 2026-03-13T22:05:06,943 !! 2026-03-13T22:05:06,944 ******************************************************************************** 2026-03-13T22:05:06,944 ############################ 2026-03-13T22:05:06,945 # Package would be ignored # 2026-03-13T22:05:06,945 ############################ 2026-03-13T22:05:06,945 Python recognizes 'rna_tools.tools.triplexibility.db' as an importable package[^1], 2026-03-13T22:05:06,946 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,947 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,947 package, please make sure that 'rna_tools.tools.triplexibility.db' is explicitly added 2026-03-13T22:05:06,948 to the `packages` configuration field. 2026-03-13T22:05:06,949 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,949 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,950 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,950 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,951 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,952 If you don't want 'rna_tools.tools.triplexibility.db' to be distributed and are 2026-03-13T22:05:06,953 already explicitly excluding 'rna_tools.tools.triplexibility.db' via 2026-03-13T22:05:06,953 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,954 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,954 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,955 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,956 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,957 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,958 even if it does not contain any `.py` files. 2026-03-13T22:05:06,958 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,959 directory, all directories are treated like packages. 2026-03-13T22:05:06,959 ******************************************************************************** 2026-03-13T22:05:06,960 !! 2026-03-13T22:05:06,961 check.warn(importable) 2026-03-13T22:05:06,961 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.css' is absent from the `packages` configuration. 2026-03-13T22:05:06,962 !! 2026-03-13T22:05:06,963 ******************************************************************************** 2026-03-13T22:05:06,964 ############################ 2026-03-13T22:05:06,965 # Package would be ignored # 2026-03-13T22:05:06,965 ############################ 2026-03-13T22:05:06,965 Python recognizes 'rna_tools.tools.webserver-engine.admin.css' as an importable package[^1], 2026-03-13T22:05:06,966 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,966 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,967 package, please make sure that 'rna_tools.tools.webserver-engine.admin.css' is explicitly added 2026-03-13T22:05:06,967 to the `packages` configuration field. 2026-03-13T22:05:06,968 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,968 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,968 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,969 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,970 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,971 If you don't want 'rna_tools.tools.webserver-engine.admin.css' to be distributed and are 2026-03-13T22:05:06,971 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.css' via 2026-03-13T22:05:06,972 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,972 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,972 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,973 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,974 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,976 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,976 even if it does not contain any `.py` files. 2026-03-13T22:05:06,977 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,977 directory, all directories are treated like packages. 2026-03-13T22:05:06,978 ******************************************************************************** 2026-03-13T22:05:06,979 !! 2026-03-13T22:05:06,979 check.warn(importable) 2026-03-13T22:05:06,980 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img' is absent from the `packages` configuration. 2026-03-13T22:05:06,980 !! 2026-03-13T22:05:06,981 ******************************************************************************** 2026-03-13T22:05:06,981 ############################ 2026-03-13T22:05:06,982 # Package would be ignored # 2026-03-13T22:05:06,982 ############################ 2026-03-13T22:05:06,983 Python recognizes 'rna_tools.tools.webserver-engine.admin.img' as an importable package[^1], 2026-03-13T22:05:06,983 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:06,984 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:06,984 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img' is explicitly added 2026-03-13T22:05:06,985 to the `packages` configuration field. 2026-03-13T22:05:06,986 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:06,986 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:06,987 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:06,988 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:06,989 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:06,990 If you don't want 'rna_tools.tools.webserver-engine.admin.img' to be distributed and are 2026-03-13T22:05:06,990 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img' via 2026-03-13T22:05:06,990 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:06,991 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:06,991 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:06,992 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:06,993 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:06,993 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:06,994 even if it does not contain any `.py` files. 2026-03-13T22:05:06,994 On the other hand, currently there is no concept of package data 2026-03-13T22:05:06,995 directory, all directories are treated like packages. 2026-03-13T22:05:06,995 ******************************************************************************** 2026-03-13T22:05:06,996 !! 2026-03-13T22:05:06,996 check.warn(importable) 2026-03-13T22:05:06,997 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img.gis' is absent from the `packages` configuration. 2026-03-13T22:05:06,997 !! 2026-03-13T22:05:06,998 ******************************************************************************** 2026-03-13T22:05:06,999 ############################ 2026-03-13T22:05:06,999 # Package would be ignored # 2026-03-13T22:05:07,000 ############################ 2026-03-13T22:05:07,000 Python recognizes 'rna_tools.tools.webserver-engine.admin.img.gis' as an importable package[^1], 2026-03-13T22:05:07,001 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,002 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,002 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img.gis' is explicitly added 2026-03-13T22:05:07,003 to the `packages` configuration field. 2026-03-13T22:05:07,004 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,004 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,004 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,005 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,006 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,007 If you don't want 'rna_tools.tools.webserver-engine.admin.img.gis' to be distributed and are 2026-03-13T22:05:07,007 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img.gis' via 2026-03-13T22:05:07,008 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,008 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,009 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,010 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,011 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,012 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,013 even if it does not contain any `.py` files. 2026-03-13T22:05:07,013 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,014 directory, all directories are treated like packages. 2026-03-13T22:05:07,015 ******************************************************************************** 2026-03-13T22:05:07,015 !! 2026-03-13T22:05:07,016 check.warn(importable) 2026-03-13T22:05:07,016 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js' is absent from the `packages` configuration. 2026-03-13T22:05:07,017 !! 2026-03-13T22:05:07,017 ******************************************************************************** 2026-03-13T22:05:07,018 ############################ 2026-03-13T22:05:07,018 # Package would be ignored # 2026-03-13T22:05:07,019 ############################ 2026-03-13T22:05:07,019 Python recognizes 'rna_tools.tools.webserver-engine.admin.js' as an importable package[^1], 2026-03-13T22:05:07,019 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,020 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,021 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js' is explicitly added 2026-03-13T22:05:07,021 to the `packages` configuration field. 2026-03-13T22:05:07,022 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,022 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,023 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,024 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,024 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,025 If you don't want 'rna_tools.tools.webserver-engine.admin.js' to be distributed and are 2026-03-13T22:05:07,026 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js' via 2026-03-13T22:05:07,026 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,027 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,027 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,028 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,029 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,031 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,031 even if it does not contain any `.py` files. 2026-03-13T22:05:07,032 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,032 directory, all directories are treated like packages. 2026-03-13T22:05:07,032 ******************************************************************************** 2026-03-13T22:05:07,033 !! 2026-03-13T22:05:07,034 check.warn(importable) 2026-03-13T22:05:07,034 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js.admin' is absent from the `packages` configuration. 2026-03-13T22:05:07,035 !! 2026-03-13T22:05:07,036 ******************************************************************************** 2026-03-13T22:05:07,036 ############################ 2026-03-13T22:05:07,037 # Package would be ignored # 2026-03-13T22:05:07,037 ############################ 2026-03-13T22:05:07,038 Python recognizes 'rna_tools.tools.webserver-engine.admin.js.admin' as an importable package[^1], 2026-03-13T22:05:07,038 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,040 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,040 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js.admin' is explicitly added 2026-03-13T22:05:07,041 to the `packages` configuration field. 2026-03-13T22:05:07,042 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,042 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,043 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,043 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,044 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,045 If you don't want 'rna_tools.tools.webserver-engine.admin.js.admin' to be distributed and are 2026-03-13T22:05:07,046 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js.admin' via 2026-03-13T22:05:07,046 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,047 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,047 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,048 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,049 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,050 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,051 even if it does not contain any `.py` files. 2026-03-13T22:05:07,051 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,052 directory, all directories are treated like packages. 2026-03-13T22:05:07,052 ******************************************************************************** 2026-03-13T22:05:07,053 !! 2026-03-13T22:05:07,053 check.warn(importable) 2026-03-13T22:05:07,054 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app' is absent from the `packages` configuration. 2026-03-13T22:05:07,054 !! 2026-03-13T22:05:07,055 ******************************************************************************** 2026-03-13T22:05:07,056 ############################ 2026-03-13T22:05:07,056 # Package would be ignored # 2026-03-13T22:05:07,057 ############################ 2026-03-13T22:05:07,058 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app' as an importable package[^1], 2026-03-13T22:05:07,058 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,059 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,060 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app' is explicitly added 2026-03-13T22:05:07,060 to the `packages` configuration field. 2026-03-13T22:05:07,061 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,062 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,062 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,063 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,064 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,065 If you don't want 'rna_tools.tools.webserver-engine.app.static.app' to be distributed and are 2026-03-13T22:05:07,066 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app' via 2026-03-13T22:05:07,066 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,067 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,068 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,069 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,069 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,071 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,071 even if it does not contain any `.py` files. 2026-03-13T22:05:07,071 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,072 directory, all directories are treated like packages. 2026-03-13T22:05:07,072 ******************************************************************************** 2026-03-13T22:05:07,073 !! 2026-03-13T22:05:07,074 check.warn(importable) 2026-03-13T22:05:07,074 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is absent from the `packages` configuration. 2026-03-13T22:05:07,075 !! 2026-03-13T22:05:07,075 ******************************************************************************** 2026-03-13T22:05:07,076 ############################ 2026-03-13T22:05:07,076 # Package would be ignored # 2026-03-13T22:05:07,077 ############################ 2026-03-13T22:05:07,077 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' as an importable package[^1], 2026-03-13T22:05:07,078 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,079 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,079 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is explicitly added 2026-03-13T22:05:07,080 to the `packages` configuration field. 2026-03-13T22:05:07,081 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,081 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,082 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,083 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,084 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,085 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' to be distributed and are 2026-03-13T22:05:07,086 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' via 2026-03-13T22:05:07,086 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,087 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,088 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,089 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,090 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,092 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,092 even if it does not contain any `.py` files. 2026-03-13T22:05:07,093 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,093 directory, all directories are treated like packages. 2026-03-13T22:05:07,094 ******************************************************************************** 2026-03-13T22:05:07,095 !! 2026-03-13T22:05:07,096 check.warn(importable) 2026-03-13T22:05:07,096 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is absent from the `packages` configuration. 2026-03-13T22:05:07,096 !! 2026-03-13T22:05:07,097 ******************************************************************************** 2026-03-13T22:05:07,098 ############################ 2026-03-13T22:05:07,098 # Package would be ignored # 2026-03-13T22:05:07,098 ############################ 2026-03-13T22:05:07,099 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' as an importable package[^1], 2026-03-13T22:05:07,099 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,100 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,100 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is explicitly added 2026-03-13T22:05:07,101 to the `packages` configuration field. 2026-03-13T22:05:07,102 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,102 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,103 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,103 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,104 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,105 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' to be distributed and are 2026-03-13T22:05:07,106 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' via 2026-03-13T22:05:07,106 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,106 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,107 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,108 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,109 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,110 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,111 even if it does not contain any `.py` files. 2026-03-13T22:05:07,111 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,112 directory, all directories are treated like packages. 2026-03-13T22:05:07,112 ******************************************************************************** 2026-03-13T22:05:07,113 !! 2026-03-13T22:05:07,113 check.warn(importable) 2026-03-13T22:05:07,114 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is absent from the `packages` configuration. 2026-03-13T22:05:07,114 !! 2026-03-13T22:05:07,115 ******************************************************************************** 2026-03-13T22:05:07,116 ############################ 2026-03-13T22:05:07,116 # Package would be ignored # 2026-03-13T22:05:07,117 ############################ 2026-03-13T22:05:07,117 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' as an importable package[^1], 2026-03-13T22:05:07,118 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,119 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,119 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is explicitly added 2026-03-13T22:05:07,120 to the `packages` configuration field. 2026-03-13T22:05:07,121 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,121 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,122 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,127 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,133 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' to be distributed and are 2026-03-13T22:05:07,134 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' via 2026-03-13T22:05:07,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,134 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,135 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,136 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,139 even if it does not contain any `.py` files. 2026-03-13T22:05:07,139 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,139 directory, all directories are treated like packages. 2026-03-13T22:05:07,140 ******************************************************************************** 2026-03-13T22:05:07,141 !! 2026-03-13T22:05:07,142 check.warn(importable) 2026-03-13T22:05:07,142 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.demo' is absent from the `packages` configuration. 2026-03-13T22:05:07,143 !! 2026-03-13T22:05:07,144 ******************************************************************************** 2026-03-13T22:05:07,144 ############################ 2026-03-13T22:05:07,145 # Package would be ignored # 2026-03-13T22:05:07,145 ############################ 2026-03-13T22:05:07,146 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.demo' as an importable package[^1], 2026-03-13T22:05:07,146 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,147 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,148 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.demo' is explicitly added 2026-03-13T22:05:07,148 to the `packages` configuration field. 2026-03-13T22:05:07,149 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,150 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,150 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,151 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,152 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,153 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.demo' to be distributed and are 2026-03-13T22:05:07,154 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.demo' via 2026-03-13T22:05:07,154 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,155 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,155 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,156 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,157 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,158 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,158 even if it does not contain any `.py` files. 2026-03-13T22:05:07,159 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,159 directory, all directories are treated like packages. 2026-03-13T22:05:07,160 ******************************************************************************** 2026-03-13T22:05:07,161 !! 2026-03-13T22:05:07,161 check.warn(importable) 2026-03-13T22:05:07,162 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is absent from the `packages` configuration. 2026-03-13T22:05:07,162 !! 2026-03-13T22:05:07,163 ******************************************************************************** 2026-03-13T22:05:07,164 ############################ 2026-03-13T22:05:07,164 # Package would be ignored # 2026-03-13T22:05:07,164 ############################ 2026-03-13T22:05:07,165 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.dropzone' as an importable package[^1], 2026-03-13T22:05:07,166 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,167 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,167 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is explicitly added 2026-03-13T22:05:07,168 to the `packages` configuration field. 2026-03-13T22:05:07,169 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,169 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,170 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,170 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,173 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.dropzone' to be distributed and are 2026-03-13T22:05:07,173 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.dropzone' via 2026-03-13T22:05:07,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,175 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,176 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,177 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,179 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,179 even if it does not contain any `.py` files. 2026-03-13T22:05:07,180 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,180 directory, all directories are treated like packages. 2026-03-13T22:05:07,181 ******************************************************************************** 2026-03-13T22:05:07,182 !! 2026-03-13T22:05:07,182 check.warn(importable) 2026-03-13T22:05:07,183 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.help' is absent from the `packages` configuration. 2026-03-13T22:05:07,183 !! 2026-03-13T22:05:07,184 ******************************************************************************** 2026-03-13T22:05:07,184 ############################ 2026-03-13T22:05:07,185 # Package would be ignored # 2026-03-13T22:05:07,185 ############################ 2026-03-13T22:05:07,185 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.help' as an importable package[^1], 2026-03-13T22:05:07,186 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,187 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,187 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.help' is explicitly added 2026-03-13T22:05:07,188 to the `packages` configuration field. 2026-03-13T22:05:07,188 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,189 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,189 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,190 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,191 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,192 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.help' to be distributed and are 2026-03-13T22:05:07,192 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.help' via 2026-03-13T22:05:07,193 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,193 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,194 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,195 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,197 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,198 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,199 even if it does not contain any `.py` files. 2026-03-13T22:05:07,199 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,200 directory, all directories are treated like packages. 2026-03-13T22:05:07,200 ******************************************************************************** 2026-03-13T22:05:07,201 !! 2026-03-13T22:05:07,202 check.warn(importable) 2026-03-13T22:05:07,202 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.img' is absent from the `packages` configuration. 2026-03-13T22:05:07,203 !! 2026-03-13T22:05:07,204 ******************************************************************************** 2026-03-13T22:05:07,204 ############################ 2026-03-13T22:05:07,205 # Package would be ignored # 2026-03-13T22:05:07,205 ############################ 2026-03-13T22:05:07,206 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.img' as an importable package[^1], 2026-03-13T22:05:07,206 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,207 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,208 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.img' is explicitly added 2026-03-13T22:05:07,208 to the `packages` configuration field. 2026-03-13T22:05:07,209 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,210 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,210 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,211 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,212 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,213 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.img' to be distributed and are 2026-03-13T22:05:07,213 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.img' via 2026-03-13T22:05:07,214 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,214 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,214 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,215 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,216 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,218 even if it does not contain any `.py` files. 2026-03-13T22:05:07,219 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,219 directory, all directories are treated like packages. 2026-03-13T22:05:07,219 ******************************************************************************** 2026-03-13T22:05:07,220 !! 2026-03-13T22:05:07,221 check.warn(importable) 2026-03-13T22:05:07,221 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates' is absent from the `packages` configuration. 2026-03-13T22:05:07,222 !! 2026-03-13T22:05:07,223 ******************************************************************************** 2026-03-13T22:05:07,223 ############################ 2026-03-13T22:05:07,224 # Package would be ignored # 2026-03-13T22:05:07,224 ############################ 2026-03-13T22:05:07,225 Python recognizes 'rna_tools.tools.webserver-engine.app.templates' as an importable package[^1], 2026-03-13T22:05:07,225 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,226 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,227 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates' is explicitly added 2026-03-13T22:05:07,227 to the `packages` configuration field. 2026-03-13T22:05:07,228 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,229 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,229 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,230 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,231 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,232 If you don't want 'rna_tools.tools.webserver-engine.app.templates' to be distributed and are 2026-03-13T22:05:07,233 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates' via 2026-03-13T22:05:07,233 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,234 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,236 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,238 even if it does not contain any `.py` files. 2026-03-13T22:05:07,238 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,239 directory, all directories are treated like packages. 2026-03-13T22:05:07,239 ******************************************************************************** 2026-03-13T22:05:07,240 !! 2026-03-13T22:05:07,241 check.warn(importable) 2026-03-13T22:05:07,241 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates.archive' is absent from the `packages` configuration. 2026-03-13T22:05:07,241 !! 2026-03-13T22:05:07,242 ******************************************************************************** 2026-03-13T22:05:07,243 ############################ 2026-03-13T22:05:07,243 # Package would be ignored # 2026-03-13T22:05:07,244 ############################ 2026-03-13T22:05:07,244 Python recognizes 'rna_tools.tools.webserver-engine.app.templates.archive' as an importable package[^1], 2026-03-13T22:05:07,244 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,245 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,246 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates.archive' is explicitly added 2026-03-13T22:05:07,247 to the `packages` configuration field. 2026-03-13T22:05:07,247 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,248 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,248 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,249 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,252 If you don't want 'rna_tools.tools.webserver-engine.app.templates.archive' to be distributed and are 2026-03-13T22:05:07,252 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates.archive' via 2026-03-13T22:05:07,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,254 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,255 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,256 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,257 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,258 even if it does not contain any `.py` files. 2026-03-13T22:05:07,258 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,259 directory, all directories are treated like packages. 2026-03-13T22:05:07,259 ******************************************************************************** 2026-03-13T22:05:07,260 !! 2026-03-13T22:05:07,261 check.warn(importable) 2026-03-13T22:05:07,262 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.css' is absent from the `packages` configuration. 2026-03-13T22:05:07,262 !! 2026-03-13T22:05:07,263 ******************************************************************************** 2026-03-13T22:05:07,264 ############################ 2026-03-13T22:05:07,264 # Package would be ignored # 2026-03-13T22:05:07,264 ############################ 2026-03-13T22:05:07,265 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.css' as an importable package[^1], 2026-03-13T22:05:07,265 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,266 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,266 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.css' is explicitly added 2026-03-13T22:05:07,267 to the `packages` configuration field. 2026-03-13T22:05:07,268 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,268 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,268 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,269 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,271 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.css' to be distributed and are 2026-03-13T22:05:07,272 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.css' via 2026-03-13T22:05:07,272 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,273 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,274 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,275 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,277 even if it does not contain any `.py` files. 2026-03-13T22:05:07,278 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,278 directory, all directories are treated like packages. 2026-03-13T22:05:07,279 ******************************************************************************** 2026-03-13T22:05:07,280 !! 2026-03-13T22:05:07,280 check.warn(importable) 2026-03-13T22:05:07,281 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.img' is absent from the `packages` configuration. 2026-03-13T22:05:07,281 !! 2026-03-13T22:05:07,282 ******************************************************************************** 2026-03-13T22:05:07,283 ############################ 2026-03-13T22:05:07,283 # Package would be ignored # 2026-03-13T22:05:07,284 ############################ 2026-03-13T22:05:07,284 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.img' as an importable package[^1], 2026-03-13T22:05:07,285 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,286 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,286 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.img' is explicitly added 2026-03-13T22:05:07,287 to the `packages` configuration field. 2026-03-13T22:05:07,288 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,288 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,289 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,290 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,291 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,292 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.img' to be distributed and are 2026-03-13T22:05:07,292 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.img' via 2026-03-13T22:05:07,293 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,293 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,293 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,294 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,297 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,297 even if it does not contain any `.py` files. 2026-03-13T22:05:07,298 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,298 directory, all directories are treated like packages. 2026-03-13T22:05:07,299 ******************************************************************************** 2026-03-13T22:05:07,300 !! 2026-03-13T22:05:07,300 check.warn(importable) 2026-03-13T22:05:07,301 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.js' is absent from the `packages` configuration. 2026-03-13T22:05:07,301 !! 2026-03-13T22:05:07,302 ******************************************************************************** 2026-03-13T22:05:07,302 ############################ 2026-03-13T22:05:07,303 # Package would be ignored # 2026-03-13T22:05:07,304 ############################ 2026-03-13T22:05:07,304 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.js' as an importable package[^1], 2026-03-13T22:05:07,305 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,306 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,307 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.js' is explicitly added 2026-03-13T22:05:07,307 to the `packages` configuration field. 2026-03-13T22:05:07,309 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,309 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,310 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,311 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,312 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,313 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.js' to be distributed and are 2026-03-13T22:05:07,314 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.js' via 2026-03-13T22:05:07,314 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,315 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,316 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,317 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,318 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,322 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,329 even if it does not contain any `.py` files. 2026-03-13T22:05:07,340 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,386 directory, all directories are treated like packages. 2026-03-13T22:05:07,395 ******************************************************************************** 2026-03-13T22:05:07,397 !! 2026-03-13T22:05:07,397 check.warn(importable) 2026-03-13T22:05:07,398 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.docs' is absent from the `packages` configuration. 2026-03-13T22:05:07,398 !! 2026-03-13T22:05:07,399 ******************************************************************************** 2026-03-13T22:05:07,399 ############################ 2026-03-13T22:05:07,401 # Package would be ignored # 2026-03-13T22:05:07,403 ############################ 2026-03-13T22:05:07,404 Python recognizes 'rna_tools.tools.webserver-engine.docs' as an importable package[^1], 2026-03-13T22:05:07,405 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,406 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,406 package, please make sure that 'rna_tools.tools.webserver-engine.docs' is explicitly added 2026-03-13T22:05:07,407 to the `packages` configuration field. 2026-03-13T22:05:07,408 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,408 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,409 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,410 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,411 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,412 If you don't want 'rna_tools.tools.webserver-engine.docs' to be distributed and are 2026-03-13T22:05:07,413 already explicitly excluding 'rna_tools.tools.webserver-engine.docs' via 2026-03-13T22:05:07,413 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,414 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,415 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,416 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,416 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,418 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,419 even if it does not contain any `.py` files. 2026-03-13T22:05:07,419 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,420 directory, all directories are treated like packages. 2026-03-13T22:05:07,420 ******************************************************************************** 2026-03-13T22:05:07,421 !! 2026-03-13T22:05:07,422 check.warn(importable) 2026-03-13T22:05:07,422 /tmp/pip-build-env-ipe4xcya/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.workflow' is absent from the `packages` configuration. 2026-03-13T22:05:07,423 !! 2026-03-13T22:05:07,424 ******************************************************************************** 2026-03-13T22:05:07,424 ############################ 2026-03-13T22:05:07,425 # Package would be ignored # 2026-03-13T22:05:07,426 ############################ 2026-03-13T22:05:07,426 Python recognizes 'rna_tools.tools.workflow' as an importable package[^1], 2026-03-13T22:05:07,426 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:05:07,427 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:05:07,428 package, please make sure that 'rna_tools.tools.workflow' is explicitly added 2026-03-13T22:05:07,428 to the `packages` configuration field. 2026-03-13T22:05:07,429 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:05:07,429 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:05:07,430 instead of `find_packages(...)`/`find:`). 2026-03-13T22:05:07,431 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:05:07,431 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:05:07,432 If you don't want 'rna_tools.tools.workflow' to be distributed and are 2026-03-13T22:05:07,433 already explicitly excluding 'rna_tools.tools.workflow' via 2026-03-13T22:05:07,433 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:05:07,434 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:05:07,434 combination with a more fine grained `package-data` configuration. 2026-03-13T22:05:07,435 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:05:07,436 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:05:07,440 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:05:07,442 even if it does not contain any `.py` files. 2026-03-13T22:05:07,446 On the other hand, currently there is no concept of package data 2026-03-13T22:05:07,446 directory, all directories are treated like packages. 2026-03-13T22:05:07,447 ******************************************************************************** 2026-03-13T22:05:07,448 !! 2026-03-13T22:05:07,449 check.warn(importable) 2026-03-13T22:05:07,449 Failed to load config from /tmp/pip-wheel-9sldegfg/rna-tools_4317db7728dc4bb19143a25886126861/pyproject.toml: 'tool' 2026-03-13T22:05:07,450 Try to load it from setup.cfg 2026-03-13T22:05:07,450 copying rna_tools/pytest.ini -> build/lib/rna_tools 2026-03-13T22:05:07,451 copying rna_tools/rchie.png -> build/lib/rna_tools 2026-03-13T22:05:07,452 copying rna_tools/shell_rc.sh -> build/lib/rna_tools 2026-03-13T22:05:07,452 copying rna_tools/test.sh -> build/lib/rna_tools 2026-03-13T22:05:07,455 creating build/lib/rna_tools/data 2026-03-13T22:05:07,456 copying rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,459 copying rna_tools/data/A.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,460 copying rna_tools/data/ACGU.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,461 copying rna_tools/data/C.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,461 copying rna_tools/data/G.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,462 copying rna_tools/data/PO3_inner.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,462 copying rna_tools/data/U.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,463 copying rna_tools/data/o2prim.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,463 copying rna_tools/data/op4.pdb -> build/lib/rna_tools/data 2026-03-13T22:05:07,464 copying rna_tools/data/pdb_ids.txt -> build/lib/rna_tools/data 2026-03-13T22:05:07,464 copying rna_tools/data/rna_pdb_errors.csv -> build/lib/rna_tools/data 2026-03-13T22:05:07,465 copying rna_tools/data/shape.txt -> build/lib/rna_tools/data 2026-03-13T22:05:07,467 creating build/lib/rna_tools/tests 2026-03-13T22:05:07,476 copying rna_tools/tests/test_eval.py -> build/lib/rna_tools/tests 2026-03-13T22:05:07,477 copying rna_tools/tests/test_rna_ss_pred.sh -> build/lib/rna_tools/tests 2026-03-13T22:05:07,478 copying rna_tools/tests/test_rnafold.py -> build/lib/rna_tools/tests 2026-03-13T22:05:07,479 copying rna_tools/tests/test_seq_cyclefold.py -> build/lib/rna_tools/tests 2026-03-13T22:05:07,480 copying rna_tools/tests/test_seq_mcfold.py -> build/lib/rna_tools/tests 2026-03-13T22:05:07,480 copying rna_tools/tests/test_seq_mcfold2.py -> build/lib/rna_tools/tests 2026-03-13T22:05:07,481 creating build/lib/rna_tools/tests/test_import_module 2026-03-13T22:05:07,482 copying rna_tools/tests/test_import_module/rchie.png -> build/lib/rna_tools/tests/test_import_module 2026-03-13T22:05:07,482 copying rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/lib/rna_tools/tests/test_import_module 2026-03-13T22:05:07,483 creating build/lib/rna_tools/tests/test_import_module/test_data 2026-03-13T22:05:07,483 copying rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tests/test_import_module/test_data 2026-03-13T22:05:07,484 creating build/lib/rna_tools/tools/df 2026-03-13T22:05:07,484 copying rna_tools/tools/df/rna_df_concat.py -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,485 copying rna_tools/tools/df/rna_df_csv_sort.py -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,486 copying rna_tools/tools/df/rna_df_merge.py -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,487 copying rna_tools/tools/df/rna_df_merge_on.py -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,487 copying rna_tools/tools/df/rna_df_merge_two.py -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,488 copying rna_tools/tools/df/test.sh -> build/lib/rna_tools/tools/df 2026-03-13T22:05:07,491 creating build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,492 copying rna_tools/tools/df/test_data/cga_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,495 copying rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,498 copying rna_tools/tools/df/test_data/d3.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,499 copying rna_tools/tools/df/test_data/d8.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,499 copying rna_tools/tools/df/test_data/min_2.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,500 copying rna_tools/tools/df/test_data/min_3.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,501 copying rna_tools/tools/df/test_data/min_4.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,501 copying rna_tools/tools/df/test_data/rna_df_concat.py -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,504 copying rna_tools/tools/df/test_data/rna_df_merge.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,506 copying rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:05:07,509 creating build/lib/rna_tools/tools/openfold 2026-03-13T22:05:07,510 copying rna_tools/tools/openfold/rna_geometric_cropping.py -> build/lib/rna_tools/tools/openfold 2026-03-13T22:05:07,511 copying rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/lib/rna_tools/tools/openfold 2026-03-13T22:05:07,511 copying rna_tools/tools/openfold/test.sh -> build/lib/rna_tools/tools/openfold 2026-03-13T22:05:07,512 creating build/lib/rna_tools/tools/proteins 2026-03-13T22:05:07,513 copying rna_tools/tools/proteins/1djf.pdb -> build/lib/rna_tools/tools/proteins 2026-03-13T22:05:07,513 copying rna_tools/tools/proteins/calc_distances.py -> build/lib/rna_tools/tools/proteins 2026-03-13T22:05:07,514 copying rna_tools/tools/proteins/test.sh -> build/lib/rna_tools/tools/proteins 2026-03-13T22:05:07,515 copying rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/lib/rna_tools/tools/proteins 2026-03-13T22:05:07,516 creating build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:07,517 copying rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:07,518 copying rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:07,518 copying rna_tools/tools/pymol_color_by_conserv/readme.md -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:07,519 copying rna_tools/tools/pymol_color_by_conserv/test.sh -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:07,519 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data 2026-03-13T22:05:07,520 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:07,521 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:07,521 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:07,522 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:07,522 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:07,523 creating build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:07,524 copying rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:07,525 copying rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:07,526 copying rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:07,528 creating build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:07,529 copying rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:07,530 copying rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:07,531 copying rna_tools/tools/pymol_preview_generator/readme.md -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:07,532 creating build/lib/rna_tools/tools/pymol_preview_generator/bash 2026-03-13T22:05:07,533 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-03-13T22:05:07,534 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,535 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,536 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,537 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:07,538 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:07,539 creating build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,540 copying rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,541 copying rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,542 copying rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,542 copying rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,543 copying rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,544 copying rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,544 copying rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:07,545 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh 2026-03-13T22:05:07,545 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-03-13T22:05:07,546 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,546 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,547 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:07,547 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:07,548 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:07,549 creating build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,549 copying rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,550 copying rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,551 copying rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,551 copying rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,552 copying rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,553 copying rna_tools/tools/rna_binding_affinity/test.sh -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:07,554 creating build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:07,555 copying rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:07,558 copying rna_tools/tools/rna_calc_gdt/test.sh -> build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:07,560 creating build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,561 copying rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,564 copying rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,567 copying rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,569 copying rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,571 copying rna_tools/tools/rna_calc_hbonds/readme.md -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,573 copying rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,575 copying rna_tools/tools/rna_calc_hbonds/test.sh -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:07,577 creating build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:05:07,578 copying rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:05:07,585 creating build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,586 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,588 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,591 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,593 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,595 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,598 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,601 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,604 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,606 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,608 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,612 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,614 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:07,616 creating build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,617 copying rna_tools/tools/rna_get_restraints/.gitignore -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,619 copying rna_tools/tools/rna_get_restraints/README.md -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,621 copying rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,623 copying rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,625 copying rna_tools/tools/rna_get_restraints/test.sh -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:07,627 creating build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:05:07,628 copying rna_tools/tools/rna_multimodels/check.sh -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:05:07,630 copying rna_tools/tools/rna_multimodels/readme.md -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:05:07,632 copying rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:05:07,634 copying rna_tools/tools/rna_multimodels/test_util.py -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:05:07,636 creating build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:07,638 copying rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:07,662 copying rna_tools/tools/rna_multimodels/data/seq.fa -> build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:07,664 creating build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:07,665 copying rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:07,671 copying rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:07,677 copying rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:07,681 creating build/lib/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:05:07,682 copying rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:05:07,753 creating build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:05:07,755 copying rna_tools/tools/rna_rfam/list.txt -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:05:07,759 copying rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:05:07,762 copying rna_tools/tools/rna_rfam/test.sh -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:05:07,764 creating build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,765 copying rna_tools/tools/rna_seq_identity/RF03167.cm -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,769 copying rna_tools/tools/rna_seq_identity/output.sto -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,772 copying rna_tools/tools/rna_seq_identity/pairwase.py -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,774 copying rna_tools/tools/rna_seq_identity/readme.md -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,776 copying rna_tools/tools/rna_seq_identity/seq1.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,779 copying rna_tools/tools/rna_seq_identity/seq12.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,781 copying rna_tools/tools/rna_seq_identity/seq2.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,783 copying rna_tools/tools/rna_seq_identity/test.sh -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:07,785 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:07,786 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:07,789 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:07,791 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:07,793 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:07,795 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:07,797 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:07,799 creating build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:07,801 copying rna_tools/tools/rnapuzzle_sender/.gitignore -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:07,803 copying rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:07,805 copying rna_tools/tools/rnapuzzle_sender/test.sh -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:07,807 creating build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,809 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,814 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,820 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,826 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,834 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,839 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,846 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,850 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,854 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,861 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:07,867 creating build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:07,868 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:07,886 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:08,058 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:08,237 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:08,243 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:08,251 creating build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:08,252 copying rna_tools/tools/rnashape2ascii/LICENSE -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:08,255 copying rna_tools/tools/rnashape2ascii/README.md -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:08,257 copying rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:08,259 copying rna_tools/tools/rnashape2ascii/test.sh -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:08,261 creating build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:08,262 copying rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:08,264 copying rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:08,266 creating build/lib/rna_tools/tools/sandbox 2026-03-13T22:05:08,267 creating build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:08,268 copying rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:08,270 copying rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:08,272 creating build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:08,274 copying rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:08,282 copying rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:08,291 creating build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,292 copying rna_tools/tools/triplexibility/.gitignore -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,295 copying rna_tools/tools/triplexibility/download-all-pdbs.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,298 copying rna_tools/tools/triplexibility/download-all-triples.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,301 copying rna_tools/tools/triplexibility/download-all.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,303 copying rna_tools/tools/triplexibility/lib.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,306 copying rna_tools/tools/triplexibility/process_triple.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,308 copying rna_tools/tools/triplexibility/readme.md -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,311 copying rna_tools/tools/triplexibility/splix.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,314 copying rna_tools/tools/triplexibility/test.sh -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,316 copying rna_tools/tools/triplexibility/test_all.sh -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,318 copying rna_tools/tools/triplexibility/triple-db.csv -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,338 copying rna_tools/tools/triplexibility/triplexibility.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,341 copying rna_tools/tools/triplexibility/triplexibility2.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,344 copying rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,346 copying rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,349 copying rna_tools/tools/triplexibility/trx.ipynb -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,351 copying rna_tools/tools/triplexibility/trx.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,355 copying rna_tools/tools/triplexibility/trx_analysis.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,357 copying rna_tools/tools/triplexibility/trx_analysis.txt -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,360 copying rna_tools/tools/triplexibility/trx_mutagen.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,363 copying rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,366 copying rna_tools/tools/triplexibility/trx_score.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,369 copying rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,372 copying rna_tools/tools/triplexibility/trx_score_growth.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,374 copying rna_tools/tools/triplexibility/trx_score_onCol.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,377 copying rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:05:08,379 creating build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,381 copying rna_tools/tools/triplexibility/data/XcWWX.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,383 copying rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,385 copying rna_tools/tools/triplexibility/data/db.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,388 copying rna_tools/tools/triplexibility/data/db_trx2.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,390 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,393 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:05:08,396 creating build/lib/rna_tools/tools/triplexibility/db 2026-03-13T22:05:08,397 copying rna_tools/tools/triplexibility/db/gendb.py -> build/lib/rna_tools/tools/triplexibility/db 2026-03-13T22:05:08,399 creating build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,400 copying rna_tools/tools/workflow/README.md -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,403 copying rna_tools/tools/workflow/after_peyote_clean.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,405 copying rna_tools/tools/workflow/automatix.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,407 copying rna_tools/tools/workflow/chunker.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,409 copying rna_tools/tools/workflow/clean.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,411 copying rna_tools/tools/workflow/evox.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,414 copying rna_tools/tools/workflow/inf_all.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,416 copying rna_tools/tools/workflow/mass_inf.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,418 copying rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,420 copying rna_tools/tools/workflow/mqaprna_run copy.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,427 copying rna_tools/tools/workflow/mqaprna_run.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,436 copying rna_tools/tools/workflow/pdb_list.txt -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,438 copying rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,441 copying rna_tools/tools/workflow/rm_less_2k.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,443 copying rna_tools/tools/workflow/rna_workflow.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,445 copying rna_tools/tools/workflow/rp13_automatix.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,448 copying rna_tools/tools/workflow/run -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,451 copying rna_tools/tools/workflow/run.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,453 copying rna_tools/tools/workflow/run_1 -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,456 copying rna_tools/tools/workflow/test.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,458 copying rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:05:08,460 copying rna_tools/tools/md/.gitignore -> build/lib/rna_tools/tools/md 2026-03-13T22:05:08,462 copying rna_tools/tools/md/README.md -> build/lib/rna_tools/tools/md 2026-03-13T22:05:08,465 copying rna_tools/tools/md/out.txt -> build/lib/rna_tools/tools/md 2026-03-13T22:05:08,467 copying rna_tools/tools/md/test.sh -> build/lib/rna_tools/tools/md 2026-03-13T22:05:08,469 creating build/lib/rna_tools/tools/md/data 2026-03-13T22:05:08,471 copying rna_tools/tools/md/data/rnakb_all.txt -> build/lib/rna_tools/tools/md/data 2026-03-13T22:05:08,474 creating build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,475 copying rna_tools/tools/md/test_data/1duq -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,477 copying rna_tools/tools/md/test_data/1duq.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,481 copying rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,484 copying rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,487 copying rna_tools/tools/md/test_data/3nt.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,490 copying rna_tools/tools/md/test_data/3nt_edited.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,493 copying rna_tools/tools/md/test_data/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,495 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,498 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,501 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,504 copying rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,508 copying rna_tools/tools/md/test_data/groups.txt -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,510 copying rna_tools/tools/md/test_data/temp.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:05:08,513 creating build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,514 copying rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,517 copying rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,521 copying rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,525 copying rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,528 copying rna_tools/tools/md/test_output/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,530 copying rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:05:08,533 copying rna_tools/tools/mq/README.md -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:08,535 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:08,537 copying rna_tools/tools/mq/test.sh -> build/lib/rna_tools/tools/mq 2026-03-13T22:05:08,539 creating build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,541 copying rna_tools/tools/mq/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,544 copying rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,548 copying rna_tools/tools/mq/test/1xjrA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,552 copying rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,556 copying rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,559 copying rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,563 copying rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,568 copying rna_tools/tools/mq/test/1zhoH.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,572 copying rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,577 copying rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,582 copying rna_tools/tools/mq/test/6TNA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,589 copying rna_tools/tools/mq/test/all.csv -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,592 copying rna_tools/tools/mq/test/dfire.csv -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,594 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,597 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,600 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,603 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,606 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,609 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,611 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,614 copying rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,617 copying rna_tools/tools/mq/test/test.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,621 copying rna_tools/tools/mq/test/test2.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:05:08,624 creating build/lib/rna_tools/tools/mq/tmp 2026-03-13T22:05:08,625 creating build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:05:08,626 copying rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:05:08,628 copying rna_tools/tools/simrna_trajectory/.gitignore -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:08,630 copying rna_tools/tools/simrna_trajectory/subset.trafl -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:08,642 creating build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:05:08,643 copying rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:05:08,647 copying rna_tools/tools/rna_filter/.gitignore -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:08,649 copying rna_tools/tools/rna_filter/README.md -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:08,651 copying rna_tools/tools/rna_filter/test.sh -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:08,653 copying rna_tools/tools/rna_filter/test_dca.sh -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:05:08,655 creating build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:08,656 copying rna_tools/tools/rna_filter/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:08,658 copying rna_tools/tools/rna_filter/test_data/CG.trafl -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:08,659 copying rna_tools/tools/rna_filter/test_data/restraints.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:08,661 copying rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:08,663 copying rna_tools/tools/rna_rosetta/.gitignore -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:08,665 copying rna_tools/tools/rna_rosetta/test.sh -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:05:08,667 creating build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,668 copying rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,672 copying rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,675 copying rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,678 copying rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,681 copying rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,683 copying rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,685 copying rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,687 copying rna_tools/tools/rna_rosetta/test_data/selected.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,693 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,697 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,703 copying rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,706 copying rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:08,708 creating build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,708 copying rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,710 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,712 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,718 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,720 copying rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,722 copying rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,724 copying rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,725 copying rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,727 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,729 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:08,731 copying rna_tools/tools/rna_calc_inf/readme.md -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:08,734 copying rna_tools/tools/rna_calc_inf/test.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:08,736 copying rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:08,738 creating build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:08,738 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:08,743 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:08,755 creating build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,755 copying rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,760 copying rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,765 copying rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,771 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,773 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,776 copying rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,783 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,788 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,789 copying rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,791 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,793 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,795 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,797 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,799 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,800 copying rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:08,803 creating build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,803 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,807 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,811 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,815 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,819 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,825 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,830 copying rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,832 copying rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,834 copying rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:08,835 copying rna_tools/tools/ClashCalc/.gitignore -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:05:08,837 copying rna_tools/tools/ClashCalc/README.md -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:05:08,839 creating build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:08,840 copying rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:08,860 copying rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:08,869 copying rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:08,889 copying rna_tools/tools/pymol_drawing/README.md -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:05:08,891 creating build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:08,892 copying rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:08,895 copying rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:08,898 copying rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:08,901 creating build/lib/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:05:08,902 copying rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/lib/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:05:08,904 copying rna_tools/tools/diffpdb/.gitignore -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:08,906 copying rna_tools/tools/diffpdb/README.md -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:08,908 copying rna_tools/tools/diffpdb/test.sh -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:05:08,910 creating build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,911 copying rna_tools/tools/diffpdb/doc/atom-variants.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,913 copying rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,921 copying rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,927 copying rna_tools/tools/diffpdb/doc/missing-op3.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,932 copying rna_tools/tools/diffpdb/doc/screenshot.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,939 copying rna_tools/tools/diffpdb/doc/screenshot2.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:08,942 creating build/lib/rna_tools/tools/diffpdb/lib 2026-03-13T22:05:08,943 copying rna_tools/tools/diffpdb/lib/diff2html.py -> build/lib/rna_tools/tools/diffpdb/lib 2026-03-13T22:05:08,946 creating build/lib/rna_tools/tools/diffpdb/output 2026-03-13T22:05:08,947 copying rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/lib/rna_tools/tools/diffpdb/output 2026-03-13T22:05:08,949 creating build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,950 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,955 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,958 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,961 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,964 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,967 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,970 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,973 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,977 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,980 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:08,984 creating build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:08,986 copying rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:08,991 copying rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:08,997 creating build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:08,998 copying rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:09,001 copying rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:09,003 creating build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:09,004 copying rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:09,007 copying rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:09,009 creating build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:09,010 copying rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:09,014 copying rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:09,018 copying rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:09,020 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:09,021 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:09,024 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:09,027 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:09,031 copying rna_tools/tools/rna_prediction_significance/.gitignore -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:09,033 copying rna_tools/tools/rna_prediction_significance/LICENSE -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:09,036 copying rna_tools/tools/rna_prediction_significance/README.md -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:09,039 creating build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:05:09,040 copying rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:05:09,043 copying rna_tools/tools/rna_sali2dotbracket/README.MD -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:09,045 creating build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:09,046 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:09,053 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:09,058 copying rna_tools/tools/PyMOL4RNA/README.md -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,060 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,064 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,069 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,072 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,077 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:09,081 creating build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,083 copying rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,088 copying rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,095 copying rna_tools/tools/PyMOL4RNA/doc/p.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,102 copying rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,109 copying rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,115 copying rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,145 copying rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,150 copying rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,155 copying rna_tools/tools/PyMOL4RNA/doc/run.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,180 copying rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,195 copying rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:09,200 creating build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:05:09,201 copying rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:05:09,207 copying rna_tools/tools/clarna_app/readme.md -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:09,209 copying rna_tools/tools/clarna_app/test.sh -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:05:09,211 creating build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:05:09,212 copying rna_tools/tools/clarna_app/data/cl.txt -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:05:09,215 copying rna_tools/tools/clarna_app/data/cl_full.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:05:09,218 copying rna_tools/tools/clarna_app/data/cl_short.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:05:09,220 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:09,222 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:09,223 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:09,227 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:09,230 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:09,233 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:09,235 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:09,237 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:09,238 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:09,243 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:09,247 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:09,253 copying rna_tools/tools/renum_pdb_to_aln/test.sh -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:09,255 creating build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:09,256 copying rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:09,258 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:09,261 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:09,264 copying rna_tools/tools/pdb_formatix/README.md -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:05:09,266 copying rna_tools/tools/mini_moderna3/.coveragerc -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,268 copying rna_tools/tools/mini_moderna3/.gitignore -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,270 copying rna_tools/tools/mini_moderna3/.travis.yml -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,272 copying rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,274 copying rna_tools/tools/mini_moderna3/COPYING -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,277 copying rna_tools/tools/mini_moderna3/MANIFEST.in -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,279 copying rna_tools/tools/mini_moderna3/README.md -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:05:09,281 copying rna_tools/tools/cluster_load/README.md -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:09,283 copying rna_tools/tools/cluster_load/load -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:05:09,285 copying rna_tools/tools/clarna_play/readme.md -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:09,288 copying rna_tools/tools/clarna_play/test.sh -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:05:09,290 creating build/lib/rna_tools/tools/clarna_play/docs 2026-03-13T22:05:09,290 copying rna_tools/tools/clarna_play/docs/clarna_run.png -> build/lib/rna_tools/tools/clarna_play/docs 2026-03-13T22:05:09,294 creating build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,295 copying rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,299 copying rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,304 copying rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,307 copying rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,310 copying rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,314 copying rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,318 copying rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,325 copying rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,330 copying rna_tools/tools/clarna_play/test_data/ss.fa -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:09,331 creating build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:09,332 copying rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:09,334 copying rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:09,336 creating build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:09,337 copying rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:09,342 copying rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:09,345 copying rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:09,349 copying rna_tools/tools/webserver-engine/.gitignore -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,351 copying rna_tools/tools/webserver-engine/README.md -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,354 copying rna_tools/tools/webserver-engine/ac -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,356 copying rna_tools/tools/webserver-engine/checker.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,358 copying rna_tools/tools/webserver-engine/daemon.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,360 copying rna_tools/tools/webserver-engine/ddev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,362 copying rna_tools/tools/webserver-engine/install.txt -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,364 copying rna_tools/tools/webserver-engine/notes.md -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,366 copying rna_tools/tools/webserver-engine/runme_dev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:05:09,368 creating build/lib/rna_tools/tools/webserver-engine/admin 2026-03-13T22:05:09,368 creating build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,369 copying rna_tools/tools/webserver-engine/admin/css/base.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,372 copying rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,374 copying rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,376 copying rna_tools/tools/webserver-engine/admin/css/forms.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,378 copying rna_tools/tools/webserver-engine/admin/css/ie.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,380 copying rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,382 copying rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:09,384 creating build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,385 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,387 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,389 copying rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,391 copying rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,393 copying rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,395 copying rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,397 copying rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,399 copying rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,401 copying rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,403 copying rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,405 copying rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,407 copying rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,409 copying rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,411 copying rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,413 copying rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,415 copying rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,417 copying rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,419 copying rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,421 copying rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,423 copying rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,425 copying rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,427 copying rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,429 copying rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,431 copying rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,433 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,435 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,437 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,439 copying rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,441 copying rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,443 copying rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,445 copying rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,447 copying rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,449 copying rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,451 copying rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,453 copying rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,455 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,457 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,459 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,461 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:09,463 creating build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:05:09,464 copying rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:05:09,466 creating build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,467 copying rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,469 copying rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,472 copying rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,474 copying rna_tools/tools/webserver-engine/admin/js/actions.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,477 copying rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,479 copying rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,481 copying rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,483 copying rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,485 copying rna_tools/tools/webserver-engine/admin/js/compress.py -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,487 copying rna_tools/tools/webserver-engine/admin/js/core.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,489 copying rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,492 copying rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,494 copying rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,496 copying rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,498 copying rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,503 copying rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,507 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,509 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,511 copying rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,513 copying rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:09,515 creating build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:09,516 copying rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:09,519 copying rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:09,521 copying rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:09,523 creating build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:09,524 copying rna_tools/tools/webserver-engine/docs/admin.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:09,544 copying rna_tools/tools/webserver-engine/docs/demo.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:09,562 copying rna_tools/tools/rna_refinement/.gitignore -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:05:09,565 copying rna_tools/tools/rna_refinement/test.sh -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:05:09,567 creating build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,568 copying rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,573 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,578 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,584 copying rna_tools/tools/rna_refinement/test_data/input.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,589 copying rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,596 copying rna_tools/tools/rna_refinement/test_data/output.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,603 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,609 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:09,615 copying rna_tools/tools/rna_x3dna/readme.rst -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:05:09,618 copying rna_tools/tools/rna_x3dna/test.sh -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:05:09,620 creating build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,621 copying rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,626 copying rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,629 copying rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,636 copying rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,639 copying rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:09,645 copying rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:09,770 copying rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:09,778 copying rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:09,790 copying rna_tools/tools/rna_alignment/test.sh -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:09,792 copying rna_tools/tools/rna_alignment/test_rchie.sh -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:05:09,793 creating build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:09,794 copying rna_tools/tools/rna_alignment/pngs/rchie.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:09,798 copying rna_tools/tools/rna_alignment/pngs/rscape.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:09,801 creating build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,802 copying rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,804 copying rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,806 copying rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,808 copying rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,812 copying rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,815 copying rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,820 copying rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,823 copying rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,825 copying rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,828 copying rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,831 copying rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,834 copying rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,837 copying rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,840 copying rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,842 copying rna_tools/tools/rna_alignment/test_data/ade.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,844 copying rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,846 copying rna_tools/tools/rna_alignment/test_data/af27.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,849 copying rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,851 copying rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,854 copying rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,857 copying rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,859 copying rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,861 copying rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,863 copying rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,865 copying rna_tools/tools/rna_alignment/test_data/target.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,867 copying rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,872 copying rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,875 copying rna_tools/tools/rna_alignment/test_data/xx.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:09,877 creating build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:05:09,878 copying rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:05:09,893 creating build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,894 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,897 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,900 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,902 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,905 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:09,907 creating build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,908 copying rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,910 copying rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,913 copying rna_tools/tools/rna_alignment/test_output/mini.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,915 copying rna_tools/tools/rna_alignment/test_output/out.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,917 copying rna_tools/tools/rna_alignment/test_output/plot.png -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,922 copying rna_tools/tools/rna_alignment/test_output/subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:09,924 copying rna_tools/tools/plotting/test.sh -> build/lib/rna_tools/tools/plotting 2026-03-13T22:05:09,926 creating build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:05:09,927 copying rna_tools/tools/plotting/test_data/rmsds.csv -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:05:09,931 copying rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:05:09,934 copying rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:05:09,937 copying rna_tools/tools/clanstix/.gitignore -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,939 copying rna_tools/tools/clanstix/LICENSE -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,943 copying rna_tools/tools/clanstix/README.md -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,945 copying rna_tools/tools/clanstix/colors.txt -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,948 copying rna_tools/tools/clanstix/test.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,950 copying rna_tools/tools/clanstix/test2.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,953 copying rna_tools/tools/clanstix/test3.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:05:09,955 creating build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:05:09,956 copying rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:05:09,960 copying rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:05:09,965 copying rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:05:09,990 creating build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:09,991 copying rna_tools/tools/clanstix/test_data/gmp.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:09,996 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,001 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,006 copying rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,009 copying rna_tools/tools/clanstix/test_data/matrix.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,011 copying rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,023 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,026 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:10,029 creating build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,030 copying rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,035 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,041 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,080 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,083 copying rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:10,085 copying rna_tools/tools/extra_functions/numbering.txt -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:05:10,087 copying rna_tools/tools/rna_helix_vis/README.md -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:10,089 creating build/lib/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:05:10,090 copying rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/lib/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:05:10,095 creating build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:10,096 copying rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:10,099 copying rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:10,104 copying rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:10,106 copying rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:10,108 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:05:10,109 copying rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:05:10,113 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:10,114 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:10,116 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:10,119 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:10,121 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:10,123 copying rna_tools/tools/rna_calc_rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:10,126 copying rna_tools/tools/rna_calc_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:10,129 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,130 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,132 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,134 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,137 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,139 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,141 copying rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,146 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,149 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,150 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,152 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,154 copying rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,156 copying rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,162 copying rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,166 copying rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,170 copying rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:10,174 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,175 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,220 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,261 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,271 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,280 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,289 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:10,292 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-03-13T22:05:10,292 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:10,293 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:10,297 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:10,301 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:10,305 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:10,308 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,310 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,313 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,317 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,321 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,324 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:10,328 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:10,328 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:10,331 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:10,338 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:10,345 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:10,346 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:10,353 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:10,366 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:05:10,367 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:05:10,409 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:10,410 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:10,415 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:10,419 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:10,423 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:10,428 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,429 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,431 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,434 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,436 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,438 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,440 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,445 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,449 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:10,452 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:10,453 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:10,455 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:10,457 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:10,459 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:10,462 copying rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:10,464 copying rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:10,467 copying rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:10,469 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,470 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,475 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,481 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,487 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,491 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,494 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,496 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,498 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,500 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,502 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:10,505 copying rna_tools/tools/misc/rna_ok -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:10,507 copying rna_tools/tools/misc/test.sh -> build/lib/rna_tools/tools/misc 2026-03-13T22:05:10,509 copying rna_tools/tools/mq/RASP/test.sh -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:05:10,512 copying rna_tools/tools/mq/eSCORE/test.sh -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:10,514 creating build/lib/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:05:10,515 copying rna_tools/tools/mq/eSCORE/test/escore.txt -> build/lib/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:05:10,518 copying rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:10,520 copying rna_tools/tools/mq/Dfire/test.output -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:10,522 copying rna_tools/tools/mq/Dfire/test.sh -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:05:10,525 copying rna_tools/tools/mq/ClashScore/test.sh -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:10,527 copying rna_tools/tools/mq/FARFAR2/test.sh -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:10,529 creating build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,531 copying rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,533 copying rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,536 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,538 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,540 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:10,542 copying rna_tools/tools/mq/RNA3DCNN/test.output -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:10,545 copying rna_tools/tools/mq/RNA3DCNN/test.sh -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:10,547 copying rna_tools/tools/mq/FARNA/test.sh -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:05:10,550 creating build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:10,551 copying rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:10,553 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:10,555 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:10,558 copying rna_tools/tools/mq/rsRNASP/test.sh -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:10,560 copying rna_tools/tools/mq/SimRNA/test.sh -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:10,562 creating build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:10,564 copying rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:10,567 copying rna_tools/tools/mq/SimRNA/test/output.csv -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:10,570 copying rna_tools/tools/mq/SimRNA/test/test.py -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:10,572 copying rna_tools/tools/mq/QRNAS/test.sh -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:10,575 copying rna_tools/tools/mq/RNAkb/test.sh -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:10,577 creating build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,578 copying rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,582 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,585 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,589 copying rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,592 copying rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,595 copying rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,598 copying rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,602 copying rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,675 copying rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,678 copying rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,681 copying rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,683 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,686 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,689 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,692 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,695 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:10,699 copying rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,704 copying rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,710 copying rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,716 copying rna_tools/tools/mq/RASP/test/mq.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,719 copying rna_tools/tools/mq/RASP/test/test.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,722 copying rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:10,724 copying rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:10,728 copying rna_tools/tools/mq/lib/shellgraphics/README.md -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:10,730 copying rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:10,733 copying rna_tools/tools/mq/lib/timex/.gitignore -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:10,736 copying rna_tools/tools/mq/lib/timex/LICENSE -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:10,740 copying rna_tools/tools/mq/lib/timex/README.md -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:10,742 copying rna_tools/tools/mq/lib/wrappers/README.md -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:10,745 copying rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:10,749 copying rna_tools/tools/mq/QRNAS/test/test.output -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:10,752 copying rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:10,758 copying rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,764 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,769 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,774 copying rna_tools/tools/pdb_formatix/test/protein.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,778 copying rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,780 copying rna_tools/tools/pdb_formatix/test/test0.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,785 copying rna_tools/tools/pdb_formatix/test/test0.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,790 copying rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,795 copying rna_tools/tools/pdb_formatix/test/test1.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,799 copying rna_tools/tools/pdb_formatix/test/test1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,803 copying rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,816 copying rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,821 copying rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:10,832 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,834 copying rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,838 copying rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,842 copying rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,845 copying rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,852 copying rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,855 copying rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,859 copying rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,862 copying rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,864 copying rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,867 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,870 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,872 copying rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,876 copying rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:10,879 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,880 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,883 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,885 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,888 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,891 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,893 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,896 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,898 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,901 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,904 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,906 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,909 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,911 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,914 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,916 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,919 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,921 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,924 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,926 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,929 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,931 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,934 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,937 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,939 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,942 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,945 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,948 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,951 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,953 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,956 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,958 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,961 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,964 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,966 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,969 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,971 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,974 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,976 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,979 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,982 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,984 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,987 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,989 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,991 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,994 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,996 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:10,998 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,000 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,002 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,004 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,006 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,008 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,011 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,013 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,015 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,017 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,019 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,022 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,024 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,026 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,028 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,031 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,033 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,035 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,037 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,039 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,041 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,044 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,046 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,048 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,050 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,052 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,054 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,057 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,059 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,061 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,063 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,065 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,068 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,070 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,072 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,075 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,077 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,079 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,081 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,083 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,085 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,087 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,090 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,092 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,094 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,096 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,098 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,100 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,102 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,104 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,106 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,108 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,111 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,112 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,114 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,117 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,119 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,121 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,123 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,125 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,128 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,130 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,132 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,134 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,136 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,138 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,140 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,142 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,144 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,146 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,148 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,150 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,153 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,155 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,157 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,159 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,161 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,163 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,166 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,168 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,170 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,172 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,174 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,177 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,179 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,181 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,183 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,185 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,187 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,189 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,191 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,193 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,195 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,197 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,199 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,201 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,203 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,205 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,207 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,209 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,211 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,213 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,216 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,218 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,220 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,222 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,224 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,226 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,229 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,231 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,233 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,235 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,237 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,239 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,241 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,243 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,245 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,248 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,250 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,252 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,254 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,256 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,259 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,261 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,263 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,265 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,268 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,270 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,272 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,274 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,276 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,278 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,280 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,283 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,285 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,287 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,289 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,293 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,295 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,298 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,300 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,302 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,304 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,307 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,309 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,311 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,313 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,315 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,317 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,320 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,322 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,324 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,326 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,329 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,331 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,333 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,336 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,338 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:11,340 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,342 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,344 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,346 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,348 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,351 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,353 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,355 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,357 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,360 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,362 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,364 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,366 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,369 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,371 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,373 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,376 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,378 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,380 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,382 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,385 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,387 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,389 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,391 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,393 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,396 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,398 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,400 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,402 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:11,404 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,405 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,407 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,409 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,411 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,413 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,415 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,417 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,419 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,421 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,423 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,425 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,427 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,429 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,431 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,433 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,435 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,437 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,439 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,441 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,443 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,445 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,448 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,450 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,452 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,454 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,456 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,458 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,460 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,462 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,465 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,467 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,470 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,472 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,474 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,476 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,479 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,481 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,483 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,485 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,487 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,489 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,491 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,493 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,494 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,496 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,499 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,501 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,503 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,506 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,508 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,510 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,512 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,514 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,516 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,518 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,520 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,523 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,525 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,527 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,529 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,531 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,533 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,536 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,538 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,540 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,542 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,544 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,546 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,548 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,550 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:11,552 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,553 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,555 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,558 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,560 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,562 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:11,564 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,565 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,568 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,571 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,574 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,576 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,579 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,582 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,585 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,587 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:11,589 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:11,590 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:11,594 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:11,596 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:11,599 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:11,603 copying rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:11,605 copying rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:11,608 copying rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:11,610 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,612 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,646 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,684 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,803 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,811 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,813 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,815 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:11,906 creating build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:11,907 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:11,910 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:11,912 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:11,914 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:05:11,916 copying rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:05:11,918 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:05:11,919 copying rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:05:11,921 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:11,922 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:11,924 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:11,927 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:11,929 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:11,933 creating build/lib/rna_tools/tools/webserver-engine/app/static 2026-03-13T22:05:11,934 creating build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:11,935 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:11,938 copying rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:11,995 copying rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:11,997 copying rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:11,999 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:12,000 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:12,002 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:12,004 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:12,008 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:12,011 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-03-13T22:05:12,012 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:12,013 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:12,018 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:12,020 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:12,024 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:12,026 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,028 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,031 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,034 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,039 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,043 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:12,046 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,047 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,051 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,054 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,057 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,060 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,062 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:12,065 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:05:12,066 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:05:12,069 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,071 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,074 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,077 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,079 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,085 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,090 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:12,098 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:12,099 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:12,102 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:12,105 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:05:12,107 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:05:12,109 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:12,111 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:12,115 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:12,119 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:12,122 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:12,124 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,126 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,128 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,131 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,133 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,136 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,138 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,141 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,144 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,146 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,149 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,152 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,155 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,158 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,161 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:12,163 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:12,165 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:12,168 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:12,173 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:12,181 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-03-13T22:05:12,181 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:05:12,183 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:05:12,186 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:05:12,187 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:05:12,190 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:12,192 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:12,195 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:12,198 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:12,201 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-03-13T22:05:12,202 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:05:12,204 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:05:12,206 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:12,208 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:12,210 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:12,213 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:12,215 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:12,217 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:12,219 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:12,221 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:12,224 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:12,225 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:12,228 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:12,230 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:12,234 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:12,242 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:12,243 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:12,246 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:12,248 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:12,251 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:12,254 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:12,256 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:12,258 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:12,261 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:12,263 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:05:12,264 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:05:12,269 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:12,270 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:12,273 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:12,276 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:12,277 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:12,280 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:12,283 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:05:12,284 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:05:12,287 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:12,288 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:12,290 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:12,293 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:12,295 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:12,297 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-03-13T22:05:12,297 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:12,299 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:12,302 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:12,305 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:12,309 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:12,313 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:12,314 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:12,317 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:12,319 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:12,320 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:12,324 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:12,327 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:12,330 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,331 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,340 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,347 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,349 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,352 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,358 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,362 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,367 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,371 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,375 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,379 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,383 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,389 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,392 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,394 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,397 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,399 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,404 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,406 copying rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,408 copying rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,410 copying rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,412 copying rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,414 copying rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,418 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,420 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,423 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,425 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,428 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,431 copying rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,433 copying rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,436 copying rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,438 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,444 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,452 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,455 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,460 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,464 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:12,468 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:12,469 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:12,472 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:12,479 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:12,480 copying rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:12,483 copying rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:12,486 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,487 copying rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,490 copying rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,497 copying rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,502 copying rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,506 copying rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,515 copying rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,527 copying rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,537 copying rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,548 copying rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,551 copying rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:12,556 creating build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,558 copying rna_tools/tools/webserver-engine/app/templates/about.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,560 copying rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,564 copying rna_tools/tools/webserver-engine/app/templates/assess.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,567 copying rna_tools/tools/webserver-engine/app/templates/base.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,570 copying rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,573 copying rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,577 copying rna_tools/tools/webserver-engine/app/templates/cat.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,580 copying rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,583 copying rna_tools/tools/webserver-engine/app/templates/contact.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,586 copying rna_tools/tools/webserver-engine/app/templates/delete.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,589 copying rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,593 copying rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,595 copying rna_tools/tools/webserver-engine/app/templates/edit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,598 copying rna_tools/tools/webserver-engine/app/templates/errors.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,601 copying rna_tools/tools/webserver-engine/app/templates/extract.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,604 copying rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,607 copying rna_tools/tools/webserver-engine/app/templates/help.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,611 copying rna_tools/tools/webserver-engine/app/templates/home.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,613 copying rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,616 copying rna_tools/tools/webserver-engine/app/templates/min.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,618 copying rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,621 copying rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,623 copying rna_tools/tools/webserver-engine/app/templates/notes.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,625 copying rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,628 copying rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,630 copying rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,633 copying rna_tools/tools/webserver-engine/app/templates/seq.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,635 copying rna_tools/tools/webserver-engine/app/templates/ss.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,638 copying rna_tools/tools/webserver-engine/app/templates/swap.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,640 copying rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,642 copying rna_tools/tools/webserver-engine/app/templates/tools.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,645 copying rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:12,647 creating build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,648 copying rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,651 copying rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,654 copying rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,657 copying rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,659 copying rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:12,661 copying rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:12,664 copying rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:12,667 copying rna_tools/tools/rna_alignment/utils/test.sh -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:12,669 creating build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,670 copying rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,672 copying rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,674 copying rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,676 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,678 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,680 copying rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,682 copying rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:12,684 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:12,686 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:12,689 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:12,691 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:12,693 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,694 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,697 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,700 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,702 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,704 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,706 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:12,747 UPDATING build/lib/rna_tools/_version.py 2026-03-13T22:05:12,748 set build/lib/rna_tools/_version.py to '3.27.1.post.dev21' 2026-03-13T22:05:12,749 running build_scripts 2026-03-13T22:05:12,749 creating build/scripts-3.11 2026-03-13T22:05:12,750 copying and adjusting rna_tools/rna_pdb_tools.py -> build/scripts-3.11 2026-03-13T22:05:12,753 copying and adjusting rna_tools/rna_pdb_seq.py -> build/scripts-3.11 2026-03-13T22:05:12,755 copying and adjusting rna_tools/rna_calc_fenergy.py -> build/scripts-3.11 2026-03-13T22:05:12,757 copying and adjusting rna_tools/rna_pdb_replace.py -> build/scripts-3.11 2026-03-13T22:05:12,759 copying and adjusting rna_tools/rna_standardize.py -> build/scripts-3.11 2026-03-13T22:05:12,761 copying and adjusting rna_tools/rna_pdb_inspect.py -> build/scripts-3.11 2026-03-13T22:05:12,763 copying and adjusting rna_tools/rna_cif2pdb.py -> build/scripts-3.11 2026-03-13T22:05:12,765 copying and adjusting rna_tools/rna_pdb_fetch.py -> build/scripts-3.11 2026-03-13T22:05:12,766 copying and adjusting rna_tools/rna_pdb_fetch_header.py -> build/scripts-3.11 2026-03-13T22:05:12,768 copying and adjusting rna_tools/tools/misc/rna_tools_which.py -> build/scripts-3.11 2026-03-13T22:05:12,770 copying and adjusting rna_tools/tools/misc/rna_tools_demo.py -> build/scripts-3.11 2026-03-13T22:05:12,771 copying and adjusting rna_tools/tools/workflow/rna_workflow.py -> build/scripts-3.11 2026-03-13T22:05:12,773 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/scripts-3.11 2026-03-13T22:05:12,775 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/scripts-3.11 2026-03-13T22:05:12,777 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/scripts-3.11 2026-03-13T22:05:12,780 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/scripts-3.11 2026-03-13T22:05:12,783 copying and adjusting rna_tools/rna_torsions.py -> build/scripts-3.11 2026-03-13T22:05:12,785 copying and adjusting rna_tools/tools/diffpdb/diffpdb.py -> build/scripts-3.11 2026-03-13T22:05:12,787 copying and adjusting rna_tools/tools/clanstix/rna_clanstix.py -> build/scripts-3.11 2026-03-13T22:05:12,789 copying and adjusting rna_tools/rna_dot2ct.py -> build/scripts-3.11 2026-03-13T22:05:12,791 copying and adjusting rna_tools/rna_secondary_structure_prediction.py -> build/scripts-3.11 2026-03-13T22:05:12,793 copying and adjusting rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/scripts-3.11 2026-03-13T22:05:12,794 copying and adjusting rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/scripts-3.11 2026-03-13T22:05:12,795 copying and adjusting rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/scripts-3.11 2026-03-13T22:05:12,798 copying and adjusting rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/scripts-3.11 2026-03-13T22:05:12,799 copying and adjusting rna_tools/tools/clarna_app/rna_clarna_app.py -> build/scripts-3.11 2026-03-13T22:05:12,801 copying and adjusting rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/scripts-3.11 2026-03-13T22:05:12,803 copying and adjusting rna_tools/tools/misc/rna_add_chain.py -> build/scripts-3.11 2026-03-13T22:05:12,804 copying and adjusting rna_tools/tools/misc/rna_dict2fasta.py -> build/scripts-3.11 2026-03-13T22:05:12,806 copying and adjusting rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/scripts-3.11 2026-03-13T22:05:12,808 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/scripts-3.11 2026-03-13T22:05:12,810 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/scripts-3.11 2026-03-13T22:05:12,812 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/scripts-3.11 2026-03-13T22:05:12,814 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/scripts-3.11 2026-03-13T22:05:12,816 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-03-13T22:05:12,818 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/scripts-3.11 2026-03-13T22:05:12,819 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/scripts-3.11 2026-03-13T22:05:12,821 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/scripts-3.11 2026-03-13T22:05:12,823 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/scripts-3.11 2026-03-13T22:05:12,824 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/scripts-3.11 2026-03-13T22:05:12,826 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-03-13T22:05:12,828 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/scripts-3.11 2026-03-13T22:05:12,829 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/scripts-3.11 2026-03-13T22:05:12,831 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-03-13T22:05:12,832 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-03-13T22:05:12,834 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-03-13T22:05:12,836 copying and adjusting rna_tools/tools/plotting/rna_plot_hist.py -> build/scripts-3.11 2026-03-13T22:05:12,837 copying and adjusting rna_tools/tools/plotting/rna_plot_density.py -> build/scripts-3.11 2026-03-13T22:05:12,839 copying and adjusting rna_tools/tools/plotting/rna_plot_heatmap.py -> build/scripts-3.11 2026-03-13T22:05:12,841 copying and adjusting rna_tools/tools/plotting/rna_plot_dendogram.py -> build/scripts-3.11 2026-03-13T22:05:12,842 copying and adjusting rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/scripts-3.11 2026-03-13T22:05:12,844 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-03-13T22:05:12,845 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-03-13T22:05:12,847 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-03-13T22:05:12,848 copying and adjusting rna_tools/tools/rna_filter/rna_filter.py -> build/scripts-3.11 2026-03-13T22:05:12,851 copying and adjusting rna_tools/tools/rna_filter/rna_ec2x.py -> build/scripts-3.11 2026-03-13T22:05:12,852 copying and adjusting rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/scripts-3.11 2026-03-13T22:05:12,854 copying and adjusting rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/scripts-3.11 2026-03-13T22:05:12,855 copying and adjusting rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/scripts-3.11 2026-03-13T22:05:12,857 copying and adjusting rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/scripts-3.11 2026-03-13T22:05:12,858 copying and adjusting rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/scripts-3.11 2026-03-13T22:05:12,860 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-03-13T22:05:12,862 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/scripts-3.11 2026-03-13T22:05:12,863 copying and adjusting rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/scripts-3.11 2026-03-13T22:05:12,864 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-03-13T22:05:12,866 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/scripts-3.11 2026-03-13T22:05:12,868 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/scripts-3.11 2026-03-13T22:05:12,869 copying and adjusting rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/scripts-3.11 2026-03-13T22:05:12,871 copying and adjusting rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/scripts-3.11 2026-03-13T22:05:12,872 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/scripts-3.11 2026-03-13T22:05:12,875 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/scripts-3.11 2026-03-13T22:05:12,876 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/scripts-3.11 2026-03-13T22:05:12,878 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/scripts-3.11 2026-03-13T22:05:12,879 copying and adjusting rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/scripts-3.11 2026-03-13T22:05:12,882 copying and adjusting rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/scripts-3.11 2026-03-13T22:05:12,883 copying and adjusting rna_tools/tools/rna_refinement/rna_refinement.py -> build/scripts-3.11 2026-03-13T22:05:12,885 copying and adjusting rna_tools/rna_simrnaweb_download_job.py -> build/scripts-3.11 2026-03-13T22:05:12,888 copying and adjusting rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/scripts-3.11 2026-03-13T22:05:12,890 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/scripts-3.11 2026-03-13T22:05:12,891 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/scripts-3.11 2026-03-13T22:05:12,894 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/scripts-3.11 2026-03-13T22:05:12,895 copying and adjusting rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/scripts-3.11 2026-03-13T22:05:12,898 copying and adjusting rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/scripts-3.11 2026-03-13T22:05:12,899 copying and adjusting rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/scripts-3.11 2026-03-13T22:05:12,901 copying and adjusting rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/scripts-3.11 2026-03-13T22:05:12,903 copying and adjusting rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/scripts-3.11 2026-03-13T22:05:12,905 copying and adjusting rna_tools/tools/misc/translate.py -> build/scripts-3.11 2026-03-13T22:05:12,906 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-03-13T22:05:12,908 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-03-13T22:05:12,909 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/scripts-3.11 2026-03-13T22:05:12,911 copying and adjusting rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/scripts-3.11 2026-03-13T22:05:12,912 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/scripts-3.11 2026-03-13T22:05:12,914 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/scripts-3.11 2026-03-13T22:05:12,916 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-03-13T22:05:12,918 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-03-13T22:05:12,920 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/scripts-3.11 2026-03-13T22:05:12,921 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/scripts-3.11 2026-03-13T22:05:12,923 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/scripts-3.11 2026-03-13T22:05:12,924 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/scripts-3.11 2026-03-13T22:05:12,926 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/scripts-3.11 2026-03-13T22:05:12,929 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_run.py -> build/scripts-3.11 2026-03-13T22:05:12,933 copying and adjusting rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/scripts-3.11 2026-03-13T22:05:12,937 copying and adjusting rna_tools/tools/mq/rna_mq_score.py -> build/scripts-3.11 2026-03-13T22:05:12,939 copying and adjusting rna_tools/tools/mq/rna_mq_collect.py -> build/scripts-3.11 2026-03-13T22:05:12,941 copying and adjusting rna_tools/tools/mq/rna_mq_exp.py -> build/scripts-3.11 2026-03-13T22:05:12,943 copying and adjusting rna_tools/tools/mq/rna_mq_plot.py -> build/scripts-3.11 2026-03-13T22:05:12,945 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/scripts-3.11 2026-03-13T22:05:12,947 copying and adjusting rna_tools/tools/mq/rna_mq_wx_collect.py -> build/scripts-3.11 2026-03-13T22:05:12,948 copying and adjusting rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/scripts-3.11 2026-03-13T22:05:12,949 copying and adjusting rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/scripts-3.11 2026-03-13T22:05:12,951 copying and adjusting rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/scripts-3.11 2026-03-13T22:05:12,952 copying and adjusting rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/scripts-3.11 2026-03-13T22:05:12,954 copying and adjusting rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/scripts-3.11 2026-03-13T22:05:12,955 copying and adjusting rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/scripts-3.11 2026-03-13T22:05:12,957 copying and adjusting rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/scripts-3.11 2026-03-13T22:05:12,958 copying and adjusting rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/scripts-3.11 2026-03-13T22:05:12,960 copying and adjusting rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/scripts-3.11 2026-03-13T22:05:12,962 copying and adjusting rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/scripts-3.11 2026-03-13T22:05:12,964 copying and adjusting rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/scripts-3.11 2026-03-13T22:05:12,965 copying and adjusting rna_tools/tools/md/rna_gromacs_ready.py -> build/scripts-3.11 2026-03-13T22:05:12,967 copying and adjusting rna_tools/tools/md/rna_md.py -> build/scripts-3.11 2026-03-13T22:05:12,969 copying and adjusting rna_tools/tools/md/rna_minimize.py -> build/scripts-3.11 2026-03-13T22:05:12,970 copying and adjusting rna_tools/tools/md/rna_traj_n.py -> build/scripts-3.11 2026-03-13T22:05:12,972 copying and adjusting rna_tools/tools/md/rna_traj_range.py -> build/scripts-3.11 2026-03-13T22:05:12,973 copying and adjusting rna_tools/tools/md/rna_traj_nohetm.py -> build/scripts-3.11 2026-03-13T22:05:12,975 copying and adjusting rna_tools/tools/triplexibility/triplexibility.py -> build/scripts-3.11 2026-03-13T22:05:12,977 copying and adjusting rna_tools/tools/triplexibility/triplexibility2.py -> build/scripts-3.11 2026-03-13T22:05:12,980 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/scripts-3.11 2026-03-13T22:05:12,981 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen.py -> build/scripts-3.11 2026-03-13T22:05:12,983 copying and adjusting rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/scripts-3.11 2026-03-13T22:05:12,985 copying and adjusting rna_tools/tools/triplexibility/trx_score.py -> build/scripts-3.11 2026-03-13T22:05:12,987 copying and adjusting rna_tools/tools/triplexibility/trx_score_onCol.py -> build/scripts-3.11 2026-03-13T22:05:12,989 copying and adjusting rna_tools/tools/df/rna_df_csv_sort.py -> build/scripts-3.11 2026-03-13T22:05:12,990 copying and adjusting rna_tools/tools/df/rna_df_concat.py -> build/scripts-3.11 2026-03-13T22:05:12,992 copying and adjusting rna_tools/tools/df/rna_df_merge.py -> build/scripts-3.11 2026-03-13T22:05:12,993 copying and adjusting rna_tools/tools/df/rna_df_merge_on.py -> build/scripts-3.11 2026-03-13T22:05:12,995 copying and adjusting rna_tools/tools/df/rna_df_merge_two.py -> build/scripts-3.11 2026-03-13T22:05:12,997 copying and adjusting rna_tools/tools/misc/rna_ok_mail.py -> build/scripts-3.11 2026-03-13T22:05:12,998 copying rna_tools/tools/misc/rna_ok -> build/scripts-3.11 2026-03-13T22:05:13,000 copying and adjusting rna_tools/tools/misc/rna_test_cuda.py -> build/scripts-3.11 2026-03-13T22:05:13,002 copying and adjusting rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/scripts-3.11 2026-03-13T22:05:13,004 copying and adjusting rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/scripts-3.11 2026-03-13T22:05:13,005 copying and adjusting rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/scripts-3.11 2026-03-13T22:05:13,007 copying and adjusting rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/scripts-3.11 2026-03-13T22:05:13,009 copying and adjusting rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/scripts-3.11 2026-03-13T22:05:13,010 changing mode of build/scripts-3.11/rna_pdb_tools.py from 644 to 755 2026-03-13T22:05:13,011 changing mode of build/scripts-3.11/rna_pdb_seq.py from 644 to 755 2026-03-13T22:05:13,011 changing mode of build/scripts-3.11/rna_calc_fenergy.py from 644 to 755 2026-03-13T22:05:13,012 changing mode of build/scripts-3.11/rna_pdb_replace.py from 644 to 755 2026-03-13T22:05:13,012 changing mode of build/scripts-3.11/rna_standardize.py from 644 to 755 2026-03-13T22:05:13,013 changing mode of build/scripts-3.11/rna_pdb_inspect.py from 644 to 755 2026-03-13T22:05:13,013 changing mode of build/scripts-3.11/rna_cif2pdb.py from 644 to 755 2026-03-13T22:05:13,014 changing mode of build/scripts-3.11/rna_pdb_fetch.py from 644 to 755 2026-03-13T22:05:13,014 changing mode of build/scripts-3.11/rna_pdb_fetch_header.py from 644 to 755 2026-03-13T22:05:13,015 changing mode of build/scripts-3.11/rna_tools_which.py from 644 to 755 2026-03-13T22:05:13,015 changing mode of build/scripts-3.11/rna_tools_demo.py from 644 to 755 2026-03-13T22:05:13,016 changing mode of build/scripts-3.11/rna_workflow.py from 644 to 755 2026-03-13T22:05:13,016 changing mode of build/scripts-3.11/rna_calc_rmsd.py from 644 to 755 2026-03-13T22:05:13,017 changing mode of build/scripts-3.11/rna_calc_rmsd_all_vs_all.py from 644 to 755 2026-03-13T22:05:13,017 changing mode of build/scripts-3.11/rna_calc_rmsd_biopython.py from 644 to 755 2026-03-13T22:05:13,018 changing mode of build/scripts-3.11/rna_plot_alignment_bounds.py from 644 to 755 2026-03-13T22:05:13,018 changing mode of build/scripts-3.11/rna_torsions.py from 644 to 755 2026-03-13T22:05:13,019 changing mode of build/scripts-3.11/diffpdb.py from 644 to 755 2026-03-13T22:05:13,019 changing mode of build/scripts-3.11/rna_clanstix.py from 644 to 755 2026-03-13T22:05:13,020 changing mode of build/scripts-3.11/rna_dot2ct.py from 644 to 755 2026-03-13T22:05:13,020 changing mode of build/scripts-3.11/rna_secondary_structure_prediction.py from 644 to 755 2026-03-13T22:05:13,021 changing mode of build/scripts-3.11/rna_prediction_significance.py from 644 to 755 2026-03-13T22:05:13,021 changing mode of build/scripts-3.11/rna_pdb_merge_into_one.py from 644 to 755 2026-03-13T22:05:13,022 changing mode of build/scripts-3.11/rna_calc_inf.py from 644 to 755 2026-03-13T22:05:13,023 changing mode of build/scripts-3.11/rna_pk_simrna_to_one_line.py from 644 to 755 2026-03-13T22:05:13,023 changing mode of build/scripts-3.11/rna_clarna_app.py from 644 to 755 2026-03-13T22:05:13,024 changing mode of build/scripts-3.11/rna_helix_vis.py from 644 to 755 2026-03-13T22:05:13,024 changing mode of build/scripts-3.11/rna_add_chain.py from 644 to 755 2026-03-13T22:05:13,025 changing mode of build/scripts-3.11/rna_dict2fasta.py from 644 to 755 2026-03-13T22:05:13,025 changing mode of build/scripts-3.11/rna_sali2dotbracket.py from 644 to 755 2026-03-13T22:05:13,026 changing mode of build/scripts-3.11/rna_rosetta_run.py from 644 to 755 2026-03-13T22:05:13,026 changing mode of build/scripts-3.11/rna_rosetta_cluster.py from 644 to 755 2026-03-13T22:05:13,027 changing mode of build/scripts-3.11/rna_rosetta_min.py from 644 to 755 2026-03-13T22:05:13,028 changing mode of build/scripts-3.11/rna_rosetta_n.py from 644 to 755 2026-03-13T22:05:13,028 changing mode of build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py from 644 to 755 2026-03-13T22:05:13,029 changing mode of build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py from 644 to 755 2026-03-13T22:05:13,029 changing mode of build/scripts-3.11/rna_rosetta_check_progress.py from 644 to 755 2026-03-13T22:05:13,030 changing mode of build/scripts-3.11/rna_rosetta_head.py from 644 to 755 2026-03-13T22:05:13,031 changing mode of build/scripts-3.11/rna_rosetta_extract.py from 644 to 755 2026-03-13T22:05:13,031 changing mode of build/scripts-3.11/rna_rosetta_get_score.py from 644 to 755 2026-03-13T22:05:13,032 changing mode of build/scripts-3.11/rna_rosetta_silent_random.py from 644 to 755 2026-03-13T22:05:13,032 changing mode of build/scripts-3.11/rna_rosetta_silent_split.py from 644 to 755 2026-03-13T22:05:13,033 changing mode of build/scripts-3.11/rna_simrna_lowest.py from 644 to 755 2026-03-13T22:05:13,033 changing mode of build/scripts-3.11/rna_simrna_extract.py from 644 to 755 2026-03-13T22:05:13,034 changing mode of build/scripts-3.11/rna_simrna_cluster.py from 644 to 755 2026-03-13T22:05:13,034 changing mode of build/scripts-3.11/rna_plot_hist.py from 644 to 755 2026-03-13T22:05:13,035 changing mode of build/scripts-3.11/rna_plot_density.py from 644 to 755 2026-03-13T22:05:13,035 changing mode of build/scripts-3.11/rna_plot_heatmap.py from 644 to 755 2026-03-13T22:05:13,036 changing mode of build/scripts-3.11/rna_plot_dendogram.py from 644 to 755 2026-03-13T22:05:13,036 changing mode of build/scripts-3.11/rna_plot_boxplotlike.py from 644 to 755 2026-03-13T22:05:13,036 changing mode of build/scripts-3.11/rna_filter.py from 644 to 755 2026-03-13T22:05:13,037 changing mode of build/scripts-3.11/rna_ec2x.py from 644 to 755 2026-03-13T22:05:13,038 changing mode of build/scripts-3.11/rna_pairs2SimRNArestrs.py from 644 to 755 2026-03-13T22:05:13,038 changing mode of build/scripts-3.11/rna_ss_get_bps.py from 644 to 755 2026-03-13T22:05:13,039 changing mode of build/scripts-3.11/rna_pairs_diff.py from 644 to 755 2026-03-13T22:05:13,039 changing mode of build/scripts-3.11/rna_download_rfam.py from 644 to 755 2026-03-13T22:05:13,040 changing mode of build/scripts-3.11/rna_align_coverage.py from 644 to 755 2026-03-13T22:05:13,040 changing mode of build/scripts-3.11/rna_align_seq_to_alignment.py from 644 to 755 2026-03-13T22:05:13,041 changing mode of build/scripts-3.11/rna_align_find_core.py from 644 to 755 2026-03-13T22:05:13,042 changing mode of build/scripts-3.11/rna_align_get_ss_from_stk.py from 644 to 755 2026-03-13T22:05:13,042 changing mode of build/scripts-3.11/rna_align_fetch_seed.py from 644 to 755 2026-03-13T22:05:13,043 changing mode of build/scripts-3.11/rna_align_fetch_cm.py from 644 to 755 2026-03-13T22:05:13,043 changing mode of build/scripts-3.11/rna_align_sto2csv.py from 644 to 755 2026-03-13T22:05:13,045 changing mode of build/scripts-3.11/rna_align_mfa2sto.py from 644 to 755 2026-03-13T22:05:13,045 changing mode of build/scripts-3.11/rna_alignment_get_species.py from 644 to 755 2026-03-13T22:05:13,046 changing mode of build/scripts-3.11/rna_alignment_process_id.py from 644 to 755 2026-03-13T22:05:13,046 changing mode of build/scripts-3.11/rna_alignment_r2r.py from 644 to 755 2026-03-13T22:05:13,047 changing mode of build/scripts-3.11/rna_align_find_seq_in_alignment.py from 644 to 755 2026-03-13T22:05:13,047 changing mode of build/scripts-3.11/rna_align_foldability.py from 644 to 755 2026-03-13T22:05:13,048 changing mode of build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py from 644 to 755 2026-03-13T22:05:13,049 changing mode of build/scripts-3.11/rna_refinement.py from 644 to 755 2026-03-13T22:05:13,049 changing mode of build/scripts-3.11/rna_simrnaweb_download_job.py from 644 to 755 2026-03-13T22:05:13,050 changing mode of build/scripts-3.11/rna_calc_evo_rmsd.py from 644 to 755 2026-03-13T22:05:13,050 changing mode of build/scripts-3.11/rna_calc_rmsd_multi_targets.py from 644 to 755 2026-03-13T22:05:13,051 changing mode of build/scripts-3.11/rna_calc_rmsd_trafl.py from 644 to 755 2026-03-13T22:05:13,051 changing mode of build/scripts-3.11/rna_cal_rmsd_trafl_plot.py from 644 to 755 2026-03-13T22:05:13,052 changing mode of build/scripts-3.11/rna_x3dna.py from 644 to 755 2026-03-13T22:05:13,052 changing mode of build/scripts-3.11/renum_pdb_to_aln.py from 644 to 755 2026-03-13T22:05:13,053 changing mode of build/scripts-3.11/pdbs_measure_atom_dists.py from 644 to 755 2026-03-13T22:05:13,054 changing mode of build/scripts-3.11/random_assignment_of_nucleotides.py from 644 to 755 2026-03-13T22:05:13,054 changing mode of build/scripts-3.11/select_seq_fromBLAStn_6outfm.py from 644 to 755 2026-03-13T22:05:13,054 changing mode of build/scripts-3.11/translate.py from 644 to 755 2026-03-13T22:05:13,055 changing mode of build/scripts-3.11/reverse.py from 644 to 755 2026-03-13T22:05:13,055 changing mode of build/scripts-3.11/rna_align_strip_stk.py from 644 to 755 2026-03-13T22:05:13,056 changing mode of build/scripts-3.11/pymol_color_by_conserv.py from 644 to 755 2026-03-13T22:05:13,056 changing mode of build/scripts-3.11/pymol_preview_generator.py from 644 to 755 2026-03-13T22:05:13,057 changing mode of build/scripts-3.11/pymol_preview_install.py from 644 to 755 2026-03-13T22:05:13,057 changing mode of build/scripts-3.11/rna_dG2kd.py from 644 to 755 2026-03-13T22:05:13,058 changing mode of build/scripts-3.11/rna_kd2dG.py from 644 to 755 2026-03-13T22:05:13,058 changing mode of build/scripts-3.11/rna_kd2pkd.py from 644 to 755 2026-03-13T22:05:13,059 changing mode of build/scripts-3.11/rna_pkd2dG.py from 644 to 755 2026-03-13T22:05:13,059 changing mode of build/scripts-3.11/rna_pkd2kd.py from 644 to 755 2026-03-13T22:05:13,060 changing mode of build/scripts-3.11/rna_clarna_compare.py from 644 to 755 2026-03-13T22:05:13,060 changing mode of build/scripts-3.11/rna_clarna_run.py from 644 to 755 2026-03-13T22:05:13,061 changing mode of build/scripts-3.11/clarna.py from 644 to 755 2026-03-13T22:05:13,061 changing mode of build/scripts-3.11/rna_mq_score.py from 644 to 755 2026-03-13T22:05:13,061 changing mode of build/scripts-3.11/rna_mq_collect.py from 644 to 755 2026-03-13T22:05:13,062 changing mode of build/scripts-3.11/rna_mq_exp.py from 644 to 755 2026-03-13T22:05:13,063 changing mode of build/scripts-3.11/rna_mq_plot.py from 644 to 755 2026-03-13T22:05:13,063 changing mode of build/scripts-3.11/rna_mq_wx_collect.py from 644 to 755 2026-03-13T22:05:13,064 changing mode of build/scripts-3.11/rna_mq_rna3dcnn.py from 644 to 755 2026-03-13T22:05:13,064 changing mode of build/scripts-3.11/rna_mq_dfire.py from 644 to 755 2026-03-13T22:05:13,065 changing mode of build/scripts-3.11/rna_mq_clashscore.py from 644 to 755 2026-03-13T22:05:13,065 changing mode of build/scripts-3.11/rna_mq_analyzegeometry.py from 644 to 755 2026-03-13T22:05:13,066 changing mode of build/scripts-3.11/rna_mq_rnakb.py from 644 to 755 2026-03-13T22:05:13,067 changing mode of build/scripts-3.11/rna_mq_rsRNASP.py from 644 to 755 2026-03-13T22:05:13,067 changing mode of build/scripts-3.11/rna_mq_eSCORE.py from 644 to 755 2026-03-13T22:05:13,068 changing mode of build/scripts-3.11/rna_mq_farna.py from 644 to 755 2026-03-13T22:05:13,069 changing mode of build/scripts-3.11/rna_mq_farfar2.py from 644 to 755 2026-03-13T22:05:13,069 changing mode of build/scripts-3.11/rna_mq_simrna.py from 644 to 755 2026-03-13T22:05:13,070 changing mode of build/scripts-3.11/rna_mq_rasp.py from 644 to 755 2026-03-13T22:05:13,070 changing mode of build/scripts-3.11/rna_gromacs_ready.py from 644 to 755 2026-03-13T22:05:13,071 changing mode of build/scripts-3.11/rna_md.py from 644 to 755 2026-03-13T22:05:13,072 changing mode of build/scripts-3.11/rna_minimize.py from 644 to 755 2026-03-13T22:05:13,072 changing mode of build/scripts-3.11/rna_traj_n.py from 644 to 755 2026-03-13T22:05:13,073 changing mode of build/scripts-3.11/rna_traj_range.py from 644 to 755 2026-03-13T22:05:13,074 changing mode of build/scripts-3.11/rna_traj_nohetm.py from 644 to 755 2026-03-13T22:05:13,075 changing mode of build/scripts-3.11/triplexibility.py from 644 to 755 2026-03-13T22:05:13,075 changing mode of build/scripts-3.11/triplexibility2.py from 644 to 755 2026-03-13T22:05:13,076 changing mode of build/scripts-3.11/trx_mutagen_allvsall.py from 644 to 755 2026-03-13T22:05:13,077 changing mode of build/scripts-3.11/trx_mutagen.py from 644 to 755 2026-03-13T22:05:13,078 changing mode of build/scripts-3.11/trx_score_allvsall.py from 644 to 755 2026-03-13T22:05:13,078 changing mode of build/scripts-3.11/trx_score.py from 644 to 755 2026-03-13T22:05:13,079 changing mode of build/scripts-3.11/trx_score_onCol.py from 644 to 755 2026-03-13T22:05:13,079 changing mode of build/scripts-3.11/rna_df_csv_sort.py from 644 to 755 2026-03-13T22:05:13,080 changing mode of build/scripts-3.11/rna_df_concat.py from 644 to 755 2026-03-13T22:05:13,080 changing mode of build/scripts-3.11/rna_df_merge.py from 644 to 755 2026-03-13T22:05:13,081 changing mode of build/scripts-3.11/rna_df_merge_on.py from 644 to 755 2026-03-13T22:05:13,081 changing mode of build/scripts-3.11/rna_df_merge_two.py from 644 to 755 2026-03-13T22:05:13,082 changing mode of build/scripts-3.11/rna_ok_mail.py from 644 to 755 2026-03-13T22:05:13,082 changing mode of build/scripts-3.11/rna_test_cuda.py from 644 to 755 2026-03-13T22:05:13,083 changing mode of build/scripts-3.11/rna_draw_edges.py from 644 to 755 2026-03-13T22:05:13,083 changing mode of build/scripts-3.11/rna_calc_hbonds.py from 644 to 755 2026-03-13T22:05:13,083 changing mode of build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py from 644 to 755 2026-03-13T22:05:13,084 changing mode of build/scripts-3.11/rna_clarna2graph.py from 644 to 755 2026-03-13T22:05:13,085 changing mode of build/scripts-3.11/rna_openfold_json_to_cif.py from 644 to 755 2026-03-13T22:05:13,086 installing to build/bdist.linux-armv7l/wheel 2026-03-13T22:05:13,086 running install 2026-03-13T22:05:13,110 running install_lib 2026-03-13T22:05:13,119 creating build/bdist.linux-armv7l 2026-03-13T22:05:13,120 creating build/bdist.linux-armv7l/wheel 2026-03-13T22:05:13,122 creating build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,123 copying build/lib/rna_tools/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,148 copying build/lib/rna_tools/pytest.ini -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,150 copying build/lib/rna_tools/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,152 copying build/lib/rna_tools/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,154 copying build/lib/rna_tools/rna_pdb_seq2.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,156 copying build/lib/rna_tools/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,158 copying build/lib/rna_tools/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,161 copying build/lib/rna_tools/BlastPDB.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,164 copying build/lib/rna_tools/RfamSearch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,166 copying build/lib/rna_tools/SecondaryStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,168 copying build/lib/rna_tools/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,171 copying build/lib/rna_tools/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,173 copying build/lib/rna_tools/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:13,176 creating build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-03-13T22:05:13,178 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,179 copying build/lib/rna_tools/tools/md/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,182 copying build/lib/rna_tools/tools/md/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,184 copying build/lib/rna_tools/tools/md/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,186 copying build/lib/rna_tools/tools/md/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,188 copying build/lib/rna_tools/tools/md/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,190 copying build/lib/rna_tools/tools/md/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,192 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,194 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,196 copying build/lib/rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,200 copying build/lib/rna_tools/tools/md/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,203 copying build/lib/rna_tools/tools/md/test_data/3nt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,205 copying build/lib/rna_tools/tools/md/test_data/3nt_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,207 copying build/lib/rna_tools/tools/md/test_data/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,210 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,213 copying build/lib/rna_tools/tools/md/test_data/groups.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,215 copying build/lib/rna_tools/tools/md/test_data/temp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,218 copying build/lib/rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,221 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,224 copying build/lib/rna_tools/tools/md/test_data/1duq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,226 copying build/lib/rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:05:13,230 copying build/lib/rna_tools/tools/md/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,232 copying build/lib/rna_tools/tools/md/out.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,234 copying build/lib/rna_tools/tools/md/rnakb_utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,237 copying build/lib/rna_tools/tools/md/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,240 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,241 copying build/lib/rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,244 copying build/lib/rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,248 copying build/lib/rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,251 copying build/lib/rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,254 copying build/lib/rna_tools/tools/md/test_output/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,257 copying build/lib/rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:05:13,260 copying build/lib/rna_tools/tools/md/rna_get_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,262 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-03-13T22:05:13,263 copying build/lib/rna_tools/tools/md/data/rnakb_all.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-03-13T22:05:13,266 copying build/lib/rna_tools/tools/md/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,268 copying build/lib/rna_tools/tools/md/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,270 copying build/lib/rna_tools/tools/md/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:05:13,272 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,274 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,274 copying build/lib/rna_tools/tools/mq/RASP/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,276 copying build/lib/rna_tools/tools/mq/RASP/RASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,279 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,280 copying build/lib/rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,282 copying build/lib/rna_tools/tools/mq/RASP/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,284 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,287 copying build/lib/rna_tools/tools/mq/RASP/test/test.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,289 copying build/lib/rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,293 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,297 copying build/lib/rna_tools/tools/mq/RASP/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,299 copying build/lib/rna_tools/tools/mq/RASP/test/mq.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:05:13,301 copying build/lib/rna_tools/tools/mq/RASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,302 copying build/lib/rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,304 copying build/lib/rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,306 copying build/lib/rna_tools/tools/mq/RASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:05:13,308 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:13,309 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:05:13,311 copying build/lib/rna_tools/tools/mq/eSCORE/test/escore.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:05:13,312 copying build/lib/rna_tools/tools/mq/eSCORE/eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:13,314 copying build/lib/rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:13,316 copying build/lib/rna_tools/tools/mq/eSCORE/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:13,318 copying build/lib/rna_tools/tools/mq/eSCORE/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:05:13,320 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:13,321 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:13,323 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:13,324 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:13,326 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:05:13,328 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,329 copying build/lib/rna_tools/tools/mq/Dfire/Dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,331 copying build/lib/rna_tools/tools/mq/Dfire/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,332 copying build/lib/rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,334 copying build/lib/rna_tools/tools/mq/Dfire/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,336 copying build/lib/rna_tools/tools/mq/Dfire/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:05:13,337 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:13,338 copying build/lib/rna_tools/tools/mq/ClashScore/ClashScore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:13,340 copying build/lib/rna_tools/tools/mq/ClashScore/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:13,342 copying build/lib/rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:13,344 copying build/lib/rna_tools/tools/mq/ClashScore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:05:13,345 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:13,346 copying build/lib/rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:13,349 copying build/lib/rna_tools/tools/mq/FARFAR2/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:13,351 copying build/lib/rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:13,353 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,354 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,356 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,358 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,360 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,361 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:05:13,363 copying build/lib/rna_tools/tools/mq/FARFAR2/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:05:13,365 copying build/lib/rna_tools/tools/mq/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,367 copying build/lib/rna_tools/tools/mq/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,369 copying build/lib/rna_tools/tools/mq/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,371 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,372 copying build/lib/rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,375 copying build/lib/rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,379 copying build/lib/rna_tools/tools/mq/test/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,430 copying build/lib/rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,434 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,437 copying build/lib/rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,440 copying build/lib/rna_tools/tools/mq/test/all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,443 copying build/lib/rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,446 copying build/lib/rna_tools/tools/mq/test/1zhoH.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,450 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,453 copying build/lib/rna_tools/tools/mq/test/dfire.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,455 copying build/lib/rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,459 copying build/lib/rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,463 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,466 copying build/lib/rna_tools/tools/mq/test/test2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,470 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,473 copying build/lib/rna_tools/tools/mq/test/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,477 copying build/lib/rna_tools/tools/mq/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,480 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,483 copying build/lib/rna_tools/tools/mq/test/1xjrA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,487 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,490 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,492 copying build/lib/rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:05:13,495 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:13,496 copying build/lib/rna_tools/tools/mq/RNAscore/RNAscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:13,498 copying build/lib/rna_tools/tools/mq/RNAscore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:05:13,501 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-03-13T22:05:13,502 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,503 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,506 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,509 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,511 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,513 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:05:13,514 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,515 copying build/lib/rna_tools/tools/mq/lib/timex/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,519 copying build/lib/rna_tools/tools/mq/lib/timex/timex.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,520 copying build/lib/rna_tools/tools/mq/lib/timex/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,522 copying build/lib/rna_tools/tools/mq/lib/timex/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,524 copying build/lib/rna_tools/tools/mq/lib/timex/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:05:13,526 copying build/lib/rna_tools/tools/mq/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-03-13T22:05:13,528 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:13,529 copying build/lib/rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:13,531 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:13,532 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:13,534 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:05:13,536 copying build/lib/rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:13,537 copying build/lib/rna_tools/tools/mq/lib/wrappers/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:13,539 copying build/lib/rna_tools/tools/mq/lib/wrappers/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:05:13,541 copying build/lib/rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,543 copying build/lib/rna_tools/tools/mq/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,545 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,546 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,548 copying build/lib/rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,550 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,552 copying build/lib/rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,554 copying build/lib/rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:05:13,555 copying build/lib/rna_tools/tools/mq/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,557 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:05:13,558 copying build/lib/rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:05:13,560 copying build/lib/rna_tools/tools/mq/FARNA/FARNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:05:13,562 copying build/lib/rna_tools/tools/mq/FARNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:05:13,564 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:13,565 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:13,567 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:13,568 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:05:13,570 copying build/lib/rna_tools/tools/mq/FARNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:05:13,572 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:13,573 copying build/lib/rna_tools/tools/mq/rsRNASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:13,575 copying build/lib/rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:13,577 copying build/lib/rna_tools/tools/mq/rsRNASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:13,578 copying build/lib/rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:05:13,580 copying build/lib/rna_tools/tools/mq/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,583 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:13,584 copying build/lib/rna_tools/tools/mq/SimRNA/SimRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:13,587 copying build/lib/rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:13,589 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:13,590 copying build/lib/rna_tools/tools/mq/SimRNA/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:13,592 copying build/lib/rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:13,595 copying build/lib/rna_tools/tools/mq/SimRNA/test/output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:05:13,597 copying build/lib/rna_tools/tools/mq/SimRNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:13,599 copying build/lib/rna_tools/tools/mq/SimRNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:05:13,601 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:13,602 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,603 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,605 copying build/lib/rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,609 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,612 copying build/lib/rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,615 copying build/lib/rna_tools/tools/mq/QRNAS/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:05:13,617 copying build/lib/rna_tools/tools/mq/QRNAS/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:13,619 copying build/lib/rna_tools/tools/mq/QRNAS/QRNAS.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:13,621 copying build/lib/rna_tools/tools/mq/QRNAS/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:05:13,623 copying build/lib/rna_tools/tools/mq/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,626 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:13,627 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,629 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,632 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,635 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,638 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,640 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,645 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,648 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,651 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,654 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,656 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,726 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,729 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,732 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,735 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,738 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,741 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:05:13,744 copying build/lib/rna_tools/tools/mq/RNAkb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:13,747 copying build/lib/rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:13,749 copying build/lib/rna_tools/tools/mq/RNAkb/RNAkb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:13,751 copying build/lib/rna_tools/tools/mq/RNAkb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:05:13,753 copying build/lib/rna_tools/tools/mq/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,755 copying build/lib/rna_tools/tools/mq/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:05:13,758 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp 2026-03-13T22:05:13,759 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:05:13,761 copying build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:05:13,763 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,765 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,767 copying build/lib/rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,770 copying build/lib/rna_tools/tools/simrna_trajectory/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,773 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:05:13,774 copying build/lib/rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:05:13,780 copying build/lib/rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,783 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,786 copying build/lib/rna_tools/tools/simrna_trajectory/subset.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,798 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,800 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,802 copying build/lib/rna_tools/tools/simrna_trajectory/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,804 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,806 copying build/lib/rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:05:13,809 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,810 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,812 copying build/lib/rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,814 copying build/lib/rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,817 copying build/lib/rna_tools/tools/rna_filter/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,821 copying build/lib/rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,824 copying build/lib/rna_tools/tools/rna_filter/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,827 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,829 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:13,831 copying build/lib/rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:13,833 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:13,835 copying build/lib/rna_tools/tools/rna_filter/test_data/restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:13,837 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:05:13,839 copying build/lib/rna_tools/tools/rna_filter/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,842 copying build/lib/rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,844 copying build/lib/rna_tools/tools/rna_filter/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,846 copying build/lib/rna_tools/tools/rna_filter/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,849 copying build/lib/rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,851 copying build/lib/rna_tools/tools/rna_filter/test_dca.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,853 copying build/lib/rna_tools/tools/rna_filter/rna_get_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,856 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,858 copying build/lib/rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,860 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,862 copying build/lib/rna_tools/tools/rna_filter/pymol_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,865 copying build/lib/rna_tools/tools/rna_filter/rna_get_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,868 copying build/lib/rna_tools/tools/rna_filter/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,870 copying build/lib/rna_tools/tools/rna_filter/test_rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:05:13,872 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,874 copying build/lib/rna_tools/tools/rna_rosetta/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,876 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,878 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,881 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,883 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,886 copying build/lib/rna_tools/tools/rna_rosetta/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,888 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,890 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,892 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,894 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,897 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,898 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,900 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,904 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,910 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,913 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,917 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,925 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,926 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,932 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,933 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,935 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,945 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,946 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,948 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,950 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,952 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,954 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,955 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,957 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:05:13,960 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,964 copying build/lib/rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,965 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,967 copying build/lib/rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:05:13,970 copying build/lib/rna_tools/tools/rna_rosetta/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,972 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,974 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,976 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,978 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,980 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,982 copying build/lib/rna_tools/tools/rna_rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:05:13,984 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:13,985 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:13,987 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:13,989 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:13,991 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:13,993 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:05:13,994 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:05:13,997 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:13,998 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,001 copying build/lib/rna_tools/tools/rna_calc_inf/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,006 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:14,007 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:14,145 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:05:14,181 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,183 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,186 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,198 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,202 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,205 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,211 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,216 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,218 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,221 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,223 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,227 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,231 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,233 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,273 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,279 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,287 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:05:14,292 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,297 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,304 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,306 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,308 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,311 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,313 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,362 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,364 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:05:14,414 copying build/lib/rna_tools/tools/rna_calc_inf/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,416 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,419 copying build/lib/rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,421 copying build/lib/rna_tools/tools/rna_calc_inf/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:05:14,424 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,425 copying build/lib/rna_tools/tools/workflow/rm_less_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,427 copying build/lib/rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,429 copying build/lib/rna_tools/tools/workflow/mqaprna_run copy.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,495 copying build/lib/rna_tools/tools/workflow/automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,498 copying build/lib/rna_tools/tools/workflow/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,502 copying build/lib/rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,506 copying build/lib/rna_tools/tools/workflow/chunker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,510 copying build/lib/rna_tools/tools/workflow/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,511 copying build/lib/rna_tools/tools/workflow/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,513 copying build/lib/rna_tools/tools/workflow/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,515 copying build/lib/rna_tools/tools/workflow/run_1 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,517 copying build/lib/rna_tools/tools/workflow/mass_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,519 copying build/lib/rna_tools/tools/workflow/run -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,522 copying build/lib/rna_tools/tools/workflow/after_peyote_clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,524 copying build/lib/rna_tools/tools/workflow/clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,526 copying build/lib/rna_tools/tools/workflow/evox.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,528 copying build/lib/rna_tools/tools/workflow/pdb_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,530 copying build/lib/rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,532 copying build/lib/rna_tools/tools/workflow/inf_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,534 copying build/lib/rna_tools/tools/workflow/mqaprna_run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,583 copying build/lib/rna_tools/tools/workflow/rp13_automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:05:14,585 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:05:14,586 copying build/lib/rna_tools/tools/ClashCalc/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:05:14,589 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:14,590 copying build/lib/rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:14,651 copying build/lib/rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:14,720 copying build/lib/rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:05:14,749 copying build/lib/rna_tools/tools/ClashCalc/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:05:14,755 copying build/lib/rna_tools/tools/ClashCalc/ClashCalc.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:05:14,757 copying build/lib/rna_tools/tools/ClashCalc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:05:14,760 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:05:14,762 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:05:14,763 copying build/lib/rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:05:14,765 copying build/lib/rna_tools/tools/pymol_drawing/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:05:14,767 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:14,768 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:14,773 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:14,780 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:05:14,784 copying build/lib/rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:05:14,786 copying build/lib/rna_tools/tools/pymol_drawing/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:05:14,788 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,789 copying build/lib/rna_tools/tools/rna_get_restraints/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,791 copying build/lib/rna_tools/tools/rna_get_restraints/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,792 copying build/lib/rna_tools/tools/rna_get_restraints/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,794 copying build/lib/rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,796 copying build/lib/rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:05:14,799 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,800 copying build/lib/rna_tools/tools/diffpdb/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,802 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,803 copying build/lib/rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,810 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,815 copying build/lib/rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,822 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,825 copying build/lib/rna_tools/tools/diffpdb/doc/missing-op3.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,833 copying build/lib/rna_tools/tools/diffpdb/doc/atom-variants.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:05:14,836 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,836 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,839 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,844 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,849 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:14,851 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:14,858 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:05:14,866 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,871 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,878 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:14,880 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:14,886 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:05:14,890 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:14,891 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:14,893 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:05:14,895 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,900 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,902 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:14,903 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:14,905 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:05:14,907 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,909 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,913 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:05:14,916 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-03-13T22:05:14,916 copying build/lib/rna_tools/tools/diffpdb/lib/diff2html.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-03-13T22:05:14,919 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-03-13T22:05:14,920 copying build/lib/rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-03-13T22:05:14,923 copying build/lib/rna_tools/tools/diffpdb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,924 copying build/lib/rna_tools/tools/diffpdb/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,927 copying build/lib/rna_tools/tools/diffpdb/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,929 copying build/lib/rna_tools/tools/diffpdb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:05:14,932 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:14,933 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:14,937 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:14,938 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:14,941 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:14,945 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:05:14,949 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:14,952 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:05:14,955 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,957 copying build/lib/rna_tools/tools/rna_prediction_significance/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,962 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:05:14,963 copying build/lib/rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:05:14,966 copying build/lib/rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,969 copying build/lib/rna_tools/tools/rna_prediction_significance/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,971 copying build/lib/rna_tools/tools/rna_prediction_significance/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,973 copying build/lib/rna_tools/tools/rna_prediction_significance/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:05:14,976 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:14,978 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:14,980 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:14,985 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:05:14,991 copying build/lib/rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:14,994 copying build/lib/rna_tools/tools/rna_sali2dotbracket/README.MD -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:14,996 copying build/lib/rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:05:14,999 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,000 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,005 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,009 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,013 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,021 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,026 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,027 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,034 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,039 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,044 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,049 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,056 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/p.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,063 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,089 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,115 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,121 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,126 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:05:15,149 copying build/lib/rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,152 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,156 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:05:15,157 copying build/lib/rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:05:15,165 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,169 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,171 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,173 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,177 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,180 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,183 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,186 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,189 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:05:15,191 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,194 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,199 copying build/lib/rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,202 copying build/lib/rna_tools/tools/PyMOL4RNA/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,205 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,209 copying build/lib/rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,212 copying build/lib/rna_tools/tools/PyMOL4RNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:05:15,215 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,217 copying build/lib/rna_tools/tools/clarna_app/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,219 copying build/lib/rna_tools/tools/clarna_app/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,222 copying build/lib/rna_tools/tools/clarna_app/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,224 copying build/lib/rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,227 copying build/lib/rna_tools/tools/clarna_app/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,230 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:05:15,231 copying build/lib/rna_tools/tools/clarna_app/data/cl_full.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:05:15,233 copying build/lib/rna_tools/tools/clarna_app/data/cl.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:05:15,237 copying build/lib/rna_tools/tools/clarna_app/data/cl_short.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:05:15,239 copying build/lib/rna_tools/tools/clarna_app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:05:15,241 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:15,243 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:15,246 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:15,247 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:15,251 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:15,254 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:05:15,258 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:15,260 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:05:15,262 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:15,264 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:15,265 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:15,277 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:15,324 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:05:15,332 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:15,335 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:15,337 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:15,339 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:05:15,341 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:15,343 copying build/lib/rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:15,347 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:15,348 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:15,352 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:15,356 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:05:15,359 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:15,362 copying build/lib/rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:05:15,364 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,365 copying build/lib/rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,368 copying build/lib/rna_tools/tools/pdb_formatix/rebuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,370 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,371 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,377 copying build/lib/rna_tools/tools/pdb_formatix/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,379 copying build/lib/rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,384 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,387 copying build/lib/rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,389 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,393 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,396 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,401 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,409 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,413 copying build/lib/rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,417 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,425 copying build/lib/rna_tools/tools/pdb_formatix/test/protein.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,428 copying build/lib/rna_tools/tools/pdb_formatix/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,430 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:05:15,432 copying build/lib/rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,434 copying build/lib/rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,436 copying build/lib/rna_tools/tools/pdb_formatix/PDBFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,439 copying build/lib/rna_tools/tools/pdb_formatix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,441 copying build/lib/rna_tools/tools/pdb_formatix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:05:15,444 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:15,445 copying build/lib/rna_tools/tools/rna_calc_gdt/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:15,447 copying build/lib/rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:05:15,450 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,451 copying build/lib/rna_tools/tools/df/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,454 copying build/lib/rna_tools/tools/df/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,456 copying build/lib/rna_tools/tools/df/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,458 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,459 copying build/lib/rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,462 copying build/lib/rna_tools/tools/df/test_data/d8.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,464 copying build/lib/rna_tools/tools/df/test_data/min_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,466 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,468 copying build/lib/rna_tools/tools/df/test_data/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,471 copying build/lib/rna_tools/tools/df/test_data/cga_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,473 copying build/lib/rna_tools/tools/df/test_data/min_3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,475 copying build/lib/rna_tools/tools/df/test_data/d3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,477 copying build/lib/rna_tools/tools/df/test_data/min_4.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,479 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:05:15,481 copying build/lib/rna_tools/tools/df/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,483 copying build/lib/rna_tools/tools/df/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,486 copying build/lib/rna_tools/tools/df/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:05:15,489 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:05:15,490 copying build/lib/rna_tools/tools/rna_bp/base_pair.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:05:15,492 copying build/lib/rna_tools/tools/rna_bp/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:05:15,495 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:15,496 copying build/lib/rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:15,499 copying build/lib/rna_tools/tools/pymol_color_by_conserv/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:15,501 copying build/lib/rna_tools/tools/pymol_color_by_conserv/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:15,504 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:15,505 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:15,508 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:15,619 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:05:15,629 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data 2026-03-13T22:05:15,631 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:15,632 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:15,635 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:15,637 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:15,640 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:05:15,642 copying build/lib/rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:05:15,645 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:15,646 copying build/lib/rna_tools/tools/rnashape2ascii/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:15,649 copying build/lib/rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:15,652 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:15,653 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:15,655 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:05:15,657 copying build/lib/rna_tools/tools/rnashape2ascii/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:15,659 copying build/lib/rna_tools/tools/rnashape2ascii/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:05:15,662 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox 2026-03-13T22:05:15,663 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:15,665 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:15,666 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:15,670 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:05:15,676 copying build/lib/rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:15,678 copying build/lib/rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:05:15,681 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:15,682 copying build/lib/rna_tools/tools/mini_moderna3/.travis.yml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:15,685 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,686 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,689 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,692 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,695 copying build/lib/rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,697 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,699 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,702 copying build/lib/rna_tools/tools/mini_moderna3/moderna/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,706 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,707 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,710 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,712 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,714 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,716 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:05:15,719 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Template.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,721 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,724 copying build/lib/rna_tools/tools/mini_moderna3/moderna/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,727 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,731 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,732 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,735 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,737 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,740 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,743 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,745 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:05:15,748 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,749 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,752 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,770 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,771 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,773 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,777 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,780 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,783 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:15,784 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:15,787 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:15,792 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:15,797 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:05:15,803 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,807 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,812 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,816 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,821 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:05:15,825 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,829 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,832 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,835 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,837 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,840 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,843 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,845 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,848 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,850 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,852 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,855 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,857 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,860 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,861 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:05:15,865 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,867 copying build/lib/rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,870 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,872 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,875 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:15,878 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:15,879 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:15,882 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:05:15,884 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,885 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,888 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,891 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,893 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,896 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:05:15,898 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,900 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,903 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,907 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,910 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,912 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,918 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,920 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,923 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,925 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,928 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,929 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,931 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,933 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,935 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,937 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:05:15,940 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,942 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,944 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,947 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:05:15,953 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,955 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,957 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,960 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,962 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,964 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,966 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,968 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,970 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,972 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,974 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,976 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,978 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,980 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,982 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,984 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,986 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,988 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,990 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,993 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,996 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:15,999 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,001 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,002 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,004 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,006 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,008 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,010 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,012 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,014 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,016 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,018 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,019 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,022 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,024 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,026 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,028 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,030 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,032 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,034 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,036 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,038 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,040 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,042 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,045 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,046 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,048 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,050 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,052 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,054 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,055 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,057 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,059 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,061 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,063 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,065 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,067 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,068 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,071 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,072 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,074 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,076 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,078 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,080 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,082 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,084 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,086 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,087 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,089 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,091 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,093 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,094 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,096 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,098 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,100 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,102 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,104 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,106 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,108 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,109 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,111 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,113 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,115 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,117 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,119 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,121 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,123 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,124 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,126 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,128 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,130 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,132 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,134 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,135 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,137 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,139 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,141 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,143 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,145 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,147 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,150 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,152 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,154 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,156 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,158 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,160 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,162 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,165 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,167 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,169 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,171 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,173 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,175 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,178 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,180 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,182 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,184 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,186 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,188 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,191 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,193 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,195 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,197 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,199 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,201 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,203 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,205 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,208 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,210 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,212 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,214 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,216 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,219 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,221 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,223 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,225 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,227 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,229 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,231 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,234 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,236 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,238 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,240 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,242 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,244 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,247 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,249 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,251 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,253 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,256 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,258 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,261 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,262 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,264 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,266 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,268 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,271 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,273 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,275 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,277 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,279 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,281 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,284 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,286 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,288 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,290 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,293 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,295 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,297 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,299 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,302 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,304 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,306 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,308 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,310 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,312 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,315 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,317 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,319 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,322 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:05:16,324 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,326 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,328 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,331 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,333 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,335 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,337 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,340 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,342 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,344 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,346 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,349 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,351 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,354 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,356 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,358 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,360 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,362 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,365 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,367 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,369 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,372 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,374 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,376 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,378 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,380 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,383 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,385 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,387 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,390 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,392 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,394 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,397 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,399 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,401 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,404 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,406 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,408 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,410 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,413 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,415 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,417 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,420 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,422 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,425 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,427 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,430 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,432 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,434 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,437 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,439 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,442 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,444 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,446 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:05:16,449 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,451 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,453 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,455 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,457 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,460 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,462 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,464 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,466 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,469 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,471 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,473 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,475 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,477 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,479 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,481 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,484 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,486 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,489 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,491 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,493 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,495 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,497 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,500 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,502 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,504 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,506 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,508 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,510 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,513 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,515 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,517 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,519 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,522 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,524 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,526 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,528 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,530 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,532 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,534 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,536 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,538 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,540 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,542 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,544 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,546 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,548 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,551 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,553 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,555 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,557 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,559 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,561 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,563 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,565 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,568 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,570 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,572 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,574 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,576 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,578 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,580 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,582 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,584 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,587 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,589 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,591 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,593 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,595 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,598 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,600 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:05:16,603 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,604 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,607 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,609 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,612 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,614 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,616 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:05:16,619 copying build/lib/rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:16,622 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:16,623 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:16,625 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:16,627 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:16,629 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:05:16,631 copying build/lib/rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:16,633 copying build/lib/rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:05:16,635 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,636 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,639 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,641 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,644 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,645 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,648 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,649 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:05:16,651 copying build/lib/rna_tools/tools/mini_moderna3/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,653 copying build/lib/rna_tools/tools/mini_moderna3/COPYING -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,655 copying build/lib/rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,657 copying build/lib/rna_tools/tools/mini_moderna3/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,659 copying build/lib/rna_tools/tools/mini_moderna3/.coveragerc -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,661 copying build/lib/rna_tools/tools/mini_moderna3/MANIFEST.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,663 copying build/lib/rna_tools/tools/mini_moderna3/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:05:16,665 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:05:16,666 copying build/lib/rna_tools/tools/rna_rfam/list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:05:16,670 copying build/lib/rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:05:16,672 copying build/lib/rna_tools/tools/rna_rfam/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:05:16,674 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:05:16,675 copying build/lib/rna_tools/tools/rna_multimodels/check.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:05:16,677 copying build/lib/rna_tools/tools/rna_multimodels/test_util.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:05:16,679 copying build/lib/rna_tools/tools/rna_multimodels/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:05:16,681 copying build/lib/rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:05:16,683 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:05:16,686 copying build/lib/rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:05:16,694 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:16,695 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:16,701 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:16,704 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:05:16,709 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:16,710 copying build/lib/rna_tools/tools/rna_multimodels/data/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:16,715 copying build/lib/rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:05:16,760 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,761 copying build/lib/rna_tools/tools/cluster_load/load -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,763 copying build/lib/rna_tools/tools/cluster_load/cluster_load.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,765 copying build/lib/rna_tools/tools/cluster_load/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,767 copying build/lib/rna_tools/tools/cluster_load/cluster_mini_free.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,769 copying build/lib/rna_tools/tools/cluster_load/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:05:16,771 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:05:16,772 copying build/lib/rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:05:16,774 copying build/lib/rna_tools/tools/openfold/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:05:16,776 copying build/lib/rna_tools/tools/openfold/rna_geometric_cropping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:05:16,779 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:16,780 copying build/lib/rna_tools/tools/clarna_play/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:16,782 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:16,786 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:16,787 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:16,789 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:16,791 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:16,793 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:16,794 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:16,796 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:16,798 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:16,878 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:16,913 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:17,001 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:17,008 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:05:17,050 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,054 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,056 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,058 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,059 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,062 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,065 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,067 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:05:17,069 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,070 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,075 copying build/lib/rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,078 copying build/lib/rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,082 copying build/lib/rna_tools/tools/clarna_play/test_data/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,084 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,089 copying build/lib/rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,092 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,096 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,100 copying build/lib/rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:05:17,104 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-03-13T22:05:17,105 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:17,106 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:17,109 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:17,111 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:05:17,113 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:17,114 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:17,116 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:17,119 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:05:17,120 copying build/lib/rna_tools/tools/clarna_play/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-03-13T22:05:17,122 copying build/lib/rna_tools/tools/clarna_play/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:17,123 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:17,127 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:17,128 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:17,131 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:17,135 copying build/lib/rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:05:17,139 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:17,140 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:17,142 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:05:17,144 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-03-13T22:05:17,145 copying build/lib/rna_tools/tools/clarna_play/docs/clarna_run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-03-13T22:05:17,149 copying build/lib/rna_tools/tools/clarna_play/PDBSeq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:17,151 copying build/lib/rna_tools/tools/clarna_play/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:05:17,154 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,155 copying build/lib/rna_tools/tools/triplexibility/splix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,157 copying build/lib/rna_tools/tools/triplexibility/download-all-pdbs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,159 copying build/lib/rna_tools/tools/triplexibility/trx.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,161 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,163 copying build/lib/rna_tools/tools/triplexibility/download-all-triples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,165 copying build/lib/rna_tools/tools/triplexibility/lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,167 copying build/lib/rna_tools/tools/triplexibility/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,169 copying build/lib/rna_tools/tools/triplexibility/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,171 copying build/lib/rna_tools/tools/triplexibility/trx.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,173 copying build/lib/rna_tools/tools/triplexibility/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,175 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,178 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,179 copying build/lib/rna_tools/tools/triplexibility/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,182 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,184 copying build/lib/rna_tools/tools/triplexibility/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,185 copying build/lib/rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,187 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,189 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,190 copying build/lib/rna_tools/tools/triplexibility/trx_score_growth.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,192 copying build/lib/rna_tools/tools/triplexibility/triple-db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,198 copying build/lib/rna_tools/tools/triplexibility/test_all.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,200 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,202 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,203 copying build/lib/rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,205 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,207 copying build/lib/rna_tools/tools/triplexibility/data/XcWWX.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,208 copying build/lib/rna_tools/tools/triplexibility/data/db_trx2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,211 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,213 copying build/lib/rna_tools/tools/triplexibility/data/db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:05:17,215 copying build/lib/rna_tools/tools/triplexibility/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,217 copying build/lib/rna_tools/tools/triplexibility/download-all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,219 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-03-13T22:05:17,220 copying build/lib/rna_tools/tools/triplexibility/db/gendb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-03-13T22:05:17,222 copying build/lib/rna_tools/tools/triplexibility/process_triple.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,224 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:05:17,226 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,227 copying build/lib/rna_tools/tools/webserver-engine/install.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,229 copying build/lib/rna_tools/tools/webserver-engine/checker.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,231 copying build/lib/rna_tools/tools/webserver-engine/daemon.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,232 copying build/lib/rna_tools/tools/webserver-engine/checker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,234 copying build/lib/rna_tools/tools/webserver-engine/runme_dev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,236 copying build/lib/rna_tools/tools/webserver-engine/manage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,238 copying build/lib/rna_tools/tools/webserver-engine/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,239 copying build/lib/rna_tools/tools/webserver-engine/ddev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,241 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:05:17,243 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:05:17,244 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:05:17,246 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:05:17,247 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:05:17,249 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:17,250 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:17,252 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:17,255 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:17,258 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:05:17,260 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:05:17,261 copying build/lib/rna_tools/tools/webserver-engine/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,263 copying build/lib/rna_tools/tools/webserver-engine/daemon.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,265 copying build/lib/rna_tools/tools/webserver-engine/notes.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,268 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:17,268 copying build/lib/rna_tools/tools/webserver-engine/docs/admin.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:17,291 copying build/lib/rna_tools/tools/webserver-engine/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:05:17,309 copying build/lib/rna_tools/tools/webserver-engine/sendmail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,311 copying build/lib/rna_tools/tools/webserver-engine/cleanup.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:17,314 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:17,315 copying build/lib/rna_tools/tools/webserver-engine/app/views.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:17,318 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,320 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,321 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,323 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,325 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,327 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,329 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:05:17,331 copying build/lib/rna_tools/tools/webserver-engine/app/templates/seq.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,333 copying build/lib/rna_tools/tools/webserver-engine/app/templates/errors.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,334 copying build/lib/rna_tools/tools/webserver-engine/app/templates/edit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,337 copying build/lib/rna_tools/tools/webserver-engine/app/templates/home.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,339 copying build/lib/rna_tools/tools/webserver-engine/app/templates/contact.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,340 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,343 copying build/lib/rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,346 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notes.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,348 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,350 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,353 copying build/lib/rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,356 copying build/lib/rna_tools/tools/webserver-engine/app/templates/swap.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,360 copying build/lib/rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,363 copying build/lib/rna_tools/tools/webserver-engine/app/templates/delete.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,366 copying build/lib/rna_tools/tools/webserver-engine/app/templates/min.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,370 copying build/lib/rna_tools/tools/webserver-engine/app/templates/assess.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,372 copying build/lib/rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,375 copying build/lib/rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,378 copying build/lib/rna_tools/tools/webserver-engine/app/templates/base.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,381 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,384 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,388 copying build/lib/rna_tools/tools/webserver-engine/app/templates/extract.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,391 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,394 copying build/lib/rna_tools/tools/webserver-engine/app/templates/about.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,397 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,399 copying build/lib/rna_tools/tools/webserver-engine/app/templates/ss.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,402 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,405 copying build/lib/rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,407 copying build/lib/rna_tools/tools/webserver-engine/app/templates/help.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,412 copying build/lib/rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,415 copying build/lib/rna_tools/tools/webserver-engine/app/templates/cat.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,418 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tools.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:05:17,421 copying build/lib/rna_tools/tools/webserver-engine/app/models.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:17,424 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static 2026-03-13T22:05:17,427 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:17,429 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:17,431 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:17,434 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:05:17,439 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:17,441 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:17,442 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:17,445 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:05:17,449 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:17,451 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:17,452 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:17,455 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:05:17,459 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:05:17,461 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:05:17,467 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:05:17,468 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:05:17,471 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:17,472 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:17,477 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:05:17,479 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:17,483 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:05:17,486 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:17,488 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:05:17,492 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-03-13T22:05:17,493 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:17,495 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:17,498 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:05:17,502 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:17,504 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:17,509 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:17,512 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:17,516 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:05:17,523 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:17,524 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:17,528 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:17,532 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:05:17,538 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,539 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,543 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,547 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,555 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,560 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,565 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,568 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,575 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,579 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,587 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:05:17,596 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,597 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,603 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,653 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,655 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,663 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,666 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,670 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,673 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,675 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,681 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,684 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,687 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,696 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,699 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,703 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,706 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,709 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,712 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,718 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,723 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,726 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,730 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,734 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,739 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,743 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,745 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,750 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,752 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,754 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,757 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,765 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,768 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,772 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,774 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,777 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,779 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,783 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:05:17,786 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:17,788 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:17,791 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:17,793 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:17,796 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:05:17,799 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:17,800 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:17,803 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:05:17,811 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:17,813 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-03-13T22:05:17,814 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:17,815 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:17,822 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:17,828 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:17,830 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:05:17,833 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-03-13T22:05:17,834 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:05:17,836 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:05:17,839 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:17,840 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:17,842 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:17,844 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:17,846 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:05:17,848 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:17,849 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:17,852 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:05:17,854 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:05:17,856 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:05:17,857 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:05:17,860 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:17,861 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:17,865 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:17,871 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:05:17,878 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:05:17,886 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-03-13T22:05:17,890 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,897 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,910 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,918 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,924 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,932 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,941 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:05:17,953 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:05:17,957 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:05:17,979 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:17,988 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:17,995 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:18,001 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:18,004 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:18,007 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:18,010 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:05:18,016 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:18,021 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:18,025 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:18,028 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:05:18,032 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,033 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,041 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,044 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,046 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,050 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,054 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:05:18,059 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:18,060 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:18,063 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:05:18,065 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:05:18,066 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:05:18,068 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:18,069 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:18,073 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,074 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,076 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,078 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,080 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,081 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,083 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,085 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,087 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,089 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,090 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,092 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,095 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,097 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,099 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:05:18,102 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:18,103 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:18,107 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:05:18,109 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:18,112 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:18,113 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:18,116 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:18,124 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:05:18,129 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:18,133 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:18,136 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:05:18,139 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:18,192 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:18,195 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:18,196 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:05:18,198 copying build/lib/rna_tools/tools/webserver-engine/app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:18,200 copying build/lib/rna_tools/tools/webserver-engine/app/admin.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:05:18,201 copying build/lib/rna_tools/tools/webserver-engine/ac -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:18,203 copying build/lib/rna_tools/tools/webserver-engine/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:18,205 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin 2026-03-13T22:05:18,207 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,208 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,210 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,212 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,214 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,216 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,218 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,219 copying build/lib/rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,221 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,223 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,225 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,226 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,228 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,230 copying build/lib/rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,232 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,233 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,235 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,237 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,239 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,241 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,243 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,245 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,247 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,249 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,251 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,254 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,256 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,258 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,261 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,263 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,266 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:05:18,268 copying build/lib/rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:05:18,270 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,273 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,275 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,277 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,280 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,282 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,284 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,286 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,289 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,291 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:05:18,294 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,295 copying build/lib/rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,298 copying build/lib/rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,300 copying build/lib/rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,303 copying build/lib/rna_tools/tools/webserver-engine/admin/css/ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,305 copying build/lib/rna_tools/tools/webserver-engine/admin/css/forms.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,308 copying build/lib/rna_tools/tools/webserver-engine/admin/css/base.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,311 copying build/lib/rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:05:18,315 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,316 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,319 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,322 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,325 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,328 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,331 copying build/lib/rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,333 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,340 copying build/lib/rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,343 copying build/lib/rna_tools/tools/webserver-engine/admin/js/compress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,346 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,348 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,349 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,351 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,353 copying build/lib/rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,356 copying build/lib/rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,358 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,360 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,364 copying build/lib/rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,367 copying build/lib/rna_tools/tools/webserver-engine/admin/js/core.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,370 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:18,371 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:18,373 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:18,376 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:05:18,380 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:05:18,382 copying build/lib/rna_tools/tools/webserver-engine/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:05:18,385 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:18,386 copying build/lib/rna_tools/tools/webserver-engine/web/urls.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:18,389 copying build/lib/rna_tools/tools/webserver-engine/web/settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:18,392 copying build/lib/rna_tools/tools/webserver-engine/web/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:18,394 copying build/lib/rna_tools/tools/webserver-engine/web/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:05:18,397 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,398 copying build/lib/rna_tools/tools/rna_seq_identity/seq2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,400 copying build/lib/rna_tools/tools/rna_seq_identity/RF03167.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,404 copying build/lib/rna_tools/tools/rna_seq_identity/pairwase.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,406 copying build/lib/rna_tools/tools/rna_seq_identity/output.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,408 copying build/lib/rna_tools/tools/rna_seq_identity/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,410 copying build/lib/rna_tools/tools/rna_seq_identity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,412 copying build/lib/rna_tools/tools/rna_seq_identity/seq12.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,414 copying build/lib/rna_tools/tools/rna_seq_identity/seq1.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:05:18,417 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:05:18,418 copying build/lib/rna_tools/tools/rna_refinement/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:05:18,421 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,422 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,426 copying build/lib/rna_tools/tools/rna_refinement/test_data/output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,431 copying build/lib/rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,437 copying build/lib/rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,441 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,445 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,450 copying build/lib/rna_tools/tools/rna_refinement/test_data/input.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,455 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:05:18,460 copying build/lib/rna_tools/tools/rna_refinement/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:05:18,462 copying build/lib/rna_tools/tools/rna_refinement/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:05:18,464 copying build/lib/rna_tools/tools/rna_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:05:18,466 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:05:18,468 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,469 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,471 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,475 copying build/lib/rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,480 copying build/lib/rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,485 copying build/lib/rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:05:18,487 copying build/lib/rna_tools/tools/rna_x3dna/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:05:18,488 copying build/lib/rna_tools/tools/rna_x3dna/readme.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:05:18,490 copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:05:18,492 copying build/lib/rna_tools/tools/rna_x3dna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:05:18,495 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,496 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,506 copying build/lib/rna_tools/tools/rna_alignment/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,508 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,511 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,512 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,514 copying build/lib/rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,516 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,519 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,521 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,522 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,524 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,526 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,529 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,531 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,533 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,535 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:05:18,537 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,540 copying build/lib/rna_tools/tools/rna_alignment/utils/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,542 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,544 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,547 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,549 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,551 copying build/lib/rna_tools/tools/rna_alignment/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,553 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:05:18,555 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,557 copying build/lib/rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,559 copying build/lib/rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,561 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,564 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,566 copying build/lib/rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,569 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,570 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,572 copying build/lib/rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,577 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:05:18,578 copying build/lib/rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:05:18,588 copying build/lib/rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,589 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,591 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,593 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,595 copying build/lib/rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,599 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,601 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,604 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,608 copying build/lib/rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,611 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,614 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,615 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,617 copying build/lib/rna_tools/tools/rna_alignment/test_data/xx.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,619 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,621 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,624 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,627 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,630 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,632 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,634 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,636 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,639 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,641 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:05:18,644 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,651 copying build/lib/rna_tools/tools/rna_alignment/test_data/target.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,653 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,655 copying build/lib/rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,658 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,660 copying build/lib/rna_tools/tools/rna_alignment/test_data/af27.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,662 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,664 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,665 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:05:18,668 copying build/lib/rna_tools/tools/rna_alignment/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,670 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,672 copying build/lib/rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,674 copying build/lib/rna_tools/tools/rna_alignment/test_rchie.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,676 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,800 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,801 copying build/lib/rna_tools/tools/rna_alignment/test_output/plot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,805 copying build/lib/rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,807 copying build/lib/rna_tools/tools/rna_alignment/test_output/mini.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,809 copying build/lib/rna_tools/tools/rna_alignment/test_output/subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,811 copying build/lib/rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,813 copying build/lib/rna_tools/tools/rna_alignment/test_output/out.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:05:18,815 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,816 copying build/lib/rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,818 copying build/lib/rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,820 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,822 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:18,823 copying build/lib/rna_tools/tools/rna_alignment/pngs/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:18,827 copying build/lib/rna_tools/tools/rna_alignment/pngs/rscape.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:05:18,830 copying build/lib/rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,832 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,846 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,848 copying build/lib/rna_tools/tools/rna_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,849 copying build/lib/rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:05:18,852 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,853 copying build/lib/rna_tools/tools/plotting/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,855 copying build/lib/rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,858 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:05:18,858 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:05:18,861 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:05:18,864 copying build/lib/rna_tools/tools/plotting/test_data/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:05:18,866 copying build/lib/rna_tools/tools/plotting/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,868 copying build/lib/rna_tools/tools/plotting/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,870 copying build/lib/rna_tools/tools/plotting/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,872 copying build/lib/rna_tools/tools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,874 copying build/lib/rna_tools/tools/plotting/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:05:18,876 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:18,877 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:18,880 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:18,882 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:05:18,885 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:18,886 copying build/lib/rna_tools/tools/clanstix/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:18,890 copying build/lib/rna_tools/tools/clanstix/test3.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:18,892 copying build/lib/rna_tools/tools/clanstix/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:18,894 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:05:18,895 copying build/lib/rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:05:18,899 copying build/lib/rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:05:18,902 copying build/lib/rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:05:18,922 copying build/lib/rna_tools/tools/clanstix/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:18,925 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:18,926 copying build/lib/rna_tools/tools/clanstix/test_data/gmp.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:18,932 copying build/lib/rna_tools/tools/clanstix/test_data/matrix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:18,933 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:18,936 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,937 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,945 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,950 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,992 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,994 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:05:18,997 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:19,004 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:19,008 copying build/lib/rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:19,019 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:19,023 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:05:19,026 copying build/lib/rna_tools/tools/clanstix/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:19,029 copying build/lib/rna_tools/tools/clanstix/test2.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:19,031 copying build/lib/rna_tools/tools/clanstix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:19,033 copying build/lib/rna_tools/tools/clanstix/colors.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:19,035 copying build/lib/rna_tools/tools/clanstix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:05:19,038 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:05:19,039 copying build/lib/rna_tools/tools/proteins/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:05:19,042 copying build/lib/rna_tools/tools/proteins/calc_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:05:19,044 copying build/lib/rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:05:19,047 copying build/lib/rna_tools/tools/proteins/1djf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:05:19,050 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:19,051 copying build/lib/rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:19,054 copying build/lib/rna_tools/tools/rnapuzzle_sender/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:19,056 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,058 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,066 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,098 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,151 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,202 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:05:19,256 copying build/lib/rna_tools/tools/rnapuzzle_sender/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:05:19,259 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,260 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,264 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,269 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,274 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,279 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,284 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,289 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,294 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,298 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,302 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:05:19,307 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:05:19,308 copying build/lib/rna_tools/tools/extra_functions/numbering.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:05:19,310 copying build/lib/rna_tools/tools/extra_functions/gen_numbering.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:05:19,313 copying build/lib/rna_tools/tools/extra_functions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:05:19,315 copying build/lib/rna_tools/tools/extra_functions/select_fragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:05:19,319 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:19,322 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh 2026-03-13T22:05:19,324 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-03-13T22:05:19,327 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,328 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,332 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:19,333 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:19,335 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,338 copying build/lib/rna_tools/tools/pymol_preview_generator/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:19,341 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,342 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,357 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,377 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,379 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,443 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,476 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,483 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:05:19,504 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:19,509 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash 2026-03-13T22:05:19,512 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-03-13T22:05:19,514 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,515 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,519 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:19,520 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:05:19,524 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:05:19,527 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:05:19,532 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:19,534 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:05:19,537 copying build/lib/rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:05:19,553 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:19,554 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:19,556 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:05:19,562 copying build/lib/rna_tools/tools/rna_helix_vis/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:19,564 copying build/lib/rna_tools/tools/rna_helix_vis/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:19,567 copying build/lib/rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:05:19,570 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,571 copying build/lib/rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,576 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,578 copying build/lib/rna_tools/tools/rna_calc_hbonds/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,580 copying build/lib/rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,583 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,584 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,587 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,589 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,591 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,595 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,597 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,600 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,602 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,605 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,607 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,610 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,612 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:05:19,615 copying build/lib/rna_tools/tools/rna_calc_hbonds/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,617 copying build/lib/rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,619 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:05:19,621 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:05:19,623 copying build/lib/rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:05:19,629 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,630 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,632 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,634 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,637 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:05:19,638 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:05:19,647 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:19,648 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:19,650 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:19,652 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:19,654 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:05:19,657 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,659 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:05:19,661 copying build/lib/rna_tools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-03-13T22:05:19,663 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,664 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,666 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,669 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,671 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,673 copying build/lib/rna_tools/tools/rna_binding_affinity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,675 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:05:19,678 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:19,679 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:19,682 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:19,684 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:19,688 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,689 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,693 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,695 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,698 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,700 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,702 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,704 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,710 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:05:19,711 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:05:19,717 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:19,718 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:19,722 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:19,726 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:19,731 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:05:19,736 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,738 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,739 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,742 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,744 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,746 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,748 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,753 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,756 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,760 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:05:19,763 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,764 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,819 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,888 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,892 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,906 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,922 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:05:19,936 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,943 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,949 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,952 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,955 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,958 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,964 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:05:19,967 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-03-13T22:05:19,969 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:19,971 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:19,973 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:20,031 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:05:20,039 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:20,063 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:20,065 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:05:20,073 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:20,074 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:20,079 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,080 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,084 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,088 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,092 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,097 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:05:20,101 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:20,105 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:20,109 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:05:20,114 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:05:20,116 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:05:20,118 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,119 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,122 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,124 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,127 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,128 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,131 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,135 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,140 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,144 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,149 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:05:20,157 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,165 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,172 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:05:20,183 copying build/lib/rna_tools/tools/rna_calc_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,195 copying build/lib/rna_tools/tools/rna_calc_rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,214 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,237 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:20,240 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:20,245 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:05:20,250 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,257 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,264 copying build/lib/rna_tools/tools/rna_calc_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:05:20,272 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,275 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,281 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,284 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,288 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,289 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,307 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,311 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,313 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,316 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,318 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,321 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,325 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,343 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,351 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:05:20,356 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,359 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,361 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,364 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,367 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,370 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:05:20,375 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,377 copying build/lib/rna_tools/tools/misc/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,380 copying build/lib/rna_tools/tools/misc/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,383 copying build/lib/rna_tools/tools/misc/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,385 copying build/lib/rna_tools/tools/misc/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,387 copying build/lib/rna_tools/tools/misc/rna_topdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,390 copying build/lib/rna_tools/tools/misc/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,392 copying build/lib/rna_tools/tools/misc/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,395 copying build/lib/rna_tools/tools/misc/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,398 copying build/lib/rna_tools/tools/misc/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,400 copying build/lib/rna_tools/tools/misc/rna_remote_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,402 copying build/lib/rna_tools/tools/misc/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,405 copying build/lib/rna_tools/tools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,406 copying build/lib/rna_tools/tools/misc/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:05:20,409 copying build/lib/rna_tools/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,428 copying build/lib/rna_tools/rna_tools_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,450 copying build/lib/rna_tools/rna_tools_config.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,462 copying build/lib/rna_tools/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,473 copying build/lib/rna_tools/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,484 copying build/lib/rna_tools/Seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,499 copying build/lib/rna_tools/stats.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,512 creating build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,516 copying build/lib/rna_tools/tests/test_seq_cyclefold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,528 copying build/lib/rna_tools/tests/test_rnafold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,539 copying build/lib/rna_tools/tests/test_seq_mcfold2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,550 copying build/lib/rna_tools/tests/test_rna_ss_pred.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,558 copying build/lib/rna_tools/tests/test_eval.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,560 copying build/lib/rna_tools/tests/test_seq_mcfold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:05:20,564 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:05:20,565 copying build/lib/rna_tools/tests/test_import_module/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:05:20,581 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-03-13T22:05:20,584 copying build/lib/rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-03-13T22:05:20,592 copying build/lib/rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:05:20,600 copying build/lib/rna_tools/rna_tools_test_all.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,604 copying build/lib/rna_tools/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,606 copying build/lib/rna_tools/update_readme.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,608 creating build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,609 copying build/lib/rna_tools/data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,612 copying build/lib/rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,616 copying build/lib/rna_tools/data/PO3_inner.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,618 copying build/lib/rna_tools/data/pdb_ids.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,620 copying build/lib/rna_tools/data/rna_pdb_errors.csv -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,623 copying build/lib/rna_tools/data/G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,625 copying build/lib/rna_tools/data/U.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,627 copying build/lib/rna_tools/data/A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,629 copying build/lib/rna_tools/data/op4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,631 copying build/lib/rna_tools/data/shape.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,633 copying build/lib/rna_tools/data/o2prim.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,636 copying build/lib/rna_tools/data/ACGU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:05:20,639 copying build/lib/rna_tools/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,642 copying build/lib/rna_tools/shell_rc.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,645 copying build/lib/rna_tools/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,648 copying build/lib/rna_tools/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,651 copying build/lib/rna_tools/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,653 copying build/lib/rna_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:05:20,656 creating build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:05:20,657 copying build/lib/tests/test_module.py -> build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:05:20,659 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:05:20,661 running install_egg_info 2026-03-13T22:05:20,683 Copying rna_tools.egg-info to build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21-py3.11.egg-info 2026-03-13T22:05:20,740 running install_scripts 2026-03-13T22:05:20,749 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data 2026-03-13T22:05:20,750 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,754 copying build/scripts-3.11/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,762 copying build/scripts-3.11/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,767 copying build/scripts-3.11/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,771 copying build/scripts-3.11/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,775 copying build/scripts-3.11/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,780 copying build/scripts-3.11/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,785 copying build/scripts-3.11/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,789 copying build/scripts-3.11/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,793 copying build/scripts-3.11/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,796 copying build/scripts-3.11/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,800 copying build/scripts-3.11/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,803 copying build/scripts-3.11/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,807 copying build/scripts-3.11/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,812 copying build/scripts-3.11/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,816 copying build/scripts-3.11/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,819 copying build/scripts-3.11/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,823 copying build/scripts-3.11/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,828 copying build/scripts-3.11/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,833 copying build/scripts-3.11/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,836 copying build/scripts-3.11/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,839 copying build/scripts-3.11/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,842 copying build/scripts-3.11/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,845 copying build/scripts-3.11/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,848 copying build/scripts-3.11/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,851 copying build/scripts-3.11/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,855 copying build/scripts-3.11/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,860 copying build/scripts-3.11/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,865 copying build/scripts-3.11/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,870 copying build/scripts-3.11/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,873 copying build/scripts-3.11/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,878 copying build/scripts-3.11/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,880 copying build/scripts-3.11/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,883 copying build/scripts-3.11/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,887 copying build/scripts-3.11/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,890 copying build/scripts-3.11/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,893 copying build/scripts-3.11/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,897 copying build/scripts-3.11/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,900 copying build/scripts-3.11/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,905 copying build/scripts-3.11/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,908 copying build/scripts-3.11/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,912 copying build/scripts-3.11/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,916 copying build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,920 copying build/scripts-3.11/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,925 copying build/scripts-3.11/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,930 copying build/scripts-3.11/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,933 copying build/scripts-3.11/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,937 copying build/scripts-3.11/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,940 copying build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,943 copying build/scripts-3.11/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,946 copying build/scripts-3.11/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,950 copying build/scripts-3.11/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,953 copying build/scripts-3.11/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,955 copying build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,959 copying build/scripts-3.11/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,961 copying build/scripts-3.11/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,965 copying build/scripts-3.11/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,968 copying build/scripts-3.11/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,973 copying build/scripts-3.11/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,978 copying build/scripts-3.11/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,981 copying build/scripts-3.11/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,985 copying build/scripts-3.11/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,988 copying build/scripts-3.11/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,991 copying build/scripts-3.11/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,993 copying build/scripts-3.11/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:20,997 copying build/scripts-3.11/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,000 copying build/scripts-3.11/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,003 copying build/scripts-3.11/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,006 copying build/scripts-3.11/rna_align_mfa2sto.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,009 copying build/scripts-3.11/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,012 copying build/scripts-3.11/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,015 copying build/scripts-3.11/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,019 copying build/scripts-3.11/rna_openfold_json_to_cif.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,023 copying build/scripts-3.11/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,027 copying build/scripts-3.11/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,029 copying build/scripts-3.11/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,033 copying build/scripts-3.11/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,036 copying build/scripts-3.11/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,039 copying build/scripts-3.11/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,042 copying build/scripts-3.11/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,045 copying build/scripts-3.11/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,048 copying build/scripts-3.11/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,051 copying build/scripts-3.11/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,053 copying build/scripts-3.11/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,057 copying build/scripts-3.11/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,059 copying build/scripts-3.11/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,062 copying build/scripts-3.11/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,068 copying build/scripts-3.11/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,071 copying build/scripts-3.11/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,073 copying build/scripts-3.11/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,077 copying build/scripts-3.11/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,080 copying build/scripts-3.11/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,084 copying build/scripts-3.11/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,090 copying build/scripts-3.11/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,092 copying build/scripts-3.11/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,095 copying build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,098 copying build/scripts-3.11/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,101 copying build/scripts-3.11/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,104 copying build/scripts-3.11/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,107 copying build/scripts-3.11/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,110 copying build/scripts-3.11/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,113 copying build/scripts-3.11/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,117 copying build/scripts-3.11/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,121 copying build/scripts-3.11/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,124 copying build/scripts-3.11/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,129 copying build/scripts-3.11/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,135 copying build/scripts-3.11/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,141 copying build/scripts-3.11/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,147 copying build/scripts-3.11/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,153 copying build/scripts-3.11/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,155 copying build/scripts-3.11/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,157 copying build/scripts-3.11/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,160 copying build/scripts-3.11/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,162 copying build/scripts-3.11/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,165 copying build/scripts-3.11/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,169 copying build/scripts-3.11/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,172 copying build/scripts-3.11/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,176 copying build/scripts-3.11/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,180 copying build/scripts-3.11/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,184 copying build/scripts-3.11/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,187 copying build/scripts-3.11/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,190 copying build/scripts-3.11/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,192 copying build/scripts-3.11/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,195 copying build/scripts-3.11/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,198 copying build/scripts-3.11/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,200 copying build/scripts-3.11/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,203 copying build/scripts-3.11/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,206 copying build/scripts-3.11/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,209 copying build/scripts-3.11/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,212 copying build/scripts-3.11/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,214 copying build/scripts-3.11/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,217 copying build/scripts-3.11/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,220 copying build/scripts-3.11/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,222 copying build/scripts-3.11/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,225 copying build/scripts-3.11/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,227 copying build/scripts-3.11/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,231 copying build/scripts-3.11/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,233 copying build/scripts-3.11/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,236 copying build/scripts-3.11/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts 2026-03-13T22:05:21,238 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_dict2fasta.py to 755 2026-03-13T22:05:21,239 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_add_chain.py to 755 2026-03-13T22:05:21,240 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/translate.py to 755 2026-03-13T22:05:21,241 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_trafl.py to 755 2026-03-13T22:05:21,242 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_tools_demo.py to 755 2026-03-13T22:05:21,242 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_silent_split.py to 755 2026-03-13T22:05:21,243 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pkd2dG.py to 755 2026-03-13T22:05:21,244 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_align_strip_stk.py to 755 2026-03-13T22:05:21,245 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_cluster.py to 755 2026-03-13T22:05:21,245 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_nohetm.py to 755 2026-03-13T22:05:21,246 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_align_fetch_seed.py to 755 2026-03-13T22:05:21,247 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_dendogram.py to 755 2026-03-13T22:05:21,248 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd.py to 755 2026-03-13T22:05:21,248 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_farna.py to 755 2026-03-13T22:05:21,249 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_df_merge_on.py to 755 2026-03-13T22:05:21,250 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_remote.sh to 755 2026-03-13T22:05:21,251 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_simrnaweb_download_job.py to 755 2026-03-13T22:05:21,251 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_filter.py to 755 2026-03-13T22:05:21,252 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_range.py to 755 2026-03-13T22:05:21,253 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/reverse.py to 755 2026-03-13T22:05:21,254 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_get_score.py to 755 2026-03-13T22:05:21,254 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_tools_which.py to 755 2026-03-13T22:05:21,255 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_torsions.py to 755 2026-03-13T22:05:21,256 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_wx_collect.py to 755 2026-03-13T22:05:21,257 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_gromacs_ready.py to 755 2026-03-13T22:05:21,258 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_replace.py to 755 2026-03-13T22:05:21,259 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pkd2kd.py to 755 2026-03-13T22:05:21,259 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/trx_score_onCol.py to 755 2026-03-13T22:05:21,260 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_download_rfam.py to 755 2026-03-13T22:05:21,261 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_tools.py to 755 2026-03-13T22:05:21,262 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_align_get_ss_from_stk.py to 755 2026-03-13T22:05:21,263 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_prediction_significance.py to 755 2026-03-13T22:05:21,264 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/select_seq_fromBLAStn_6outfm.py to 755 2026-03-13T22:05:21,264 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_align_sto2csv.py to 755 2026-03-13T22:05:21,265 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_align_coverage.py to 755 2026-03-13T22:05:21,265 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pk_simrna_to_one_line.py to 755 2026-03-13T22:05:21,266 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_ok to 755 2026-03-13T22:05:21,266 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_standardize.py to 755 2026-03-13T22:05:21,267 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_ok_mail.py to 755 2026-03-13T22:05:21,267 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_evo_rmsd.py to 755 2026-03-13T22:05:21,268 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_df_csv_sort.py to 755 2026-03-13T22:05:21,268 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_merge_structure_with_fragments.py to 755 2026-03-13T22:05:21,269 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_all_vs_all.py to 755 2026-03-13T22:05:21,269 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_dot2ct.py to 755 2026-03-13T22:05:21,270 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_n.py to 755 2026-03-13T22:05:21,270 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_check_progress.py to 755 2026-03-13T22:05:21,271 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/triplexibility2.py to 755 2026-03-13T22:05:21,272 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_extract_lowscore_decoys.py to 755 2026-03-13T22:05:21,272 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_fetch.py to 755 2026-03-13T22:05:21,273 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/trx_mutagen_allvsall.py to 755 2026-03-13T22:05:21,273 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_hbonds.py to 755 2026-03-13T22:05:21,274 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_simrna.py to 755 2026-03-13T22:05:21,274 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_silent_file_sort_and_select.py to 755 2026-03-13T22:05:21,275 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_plot.py to 755 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2026-03-13T22:05:21,330 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.1.post0.dev21.dist-info/WHEEL 2026-03-13T22:05:21,333 creating '/tmp/pip-wheel-kwpdn7l_/.tmp-n5h7e5z0/rna_tools-3.27.1.post0.dev21-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T22:05:21,336 adding 'rna_tools/BlastPDB.py' 2026-03-13T22:05:21,338 adding 'rna_tools/RfamSearch.py' 2026-03-13T22:05:21,339 adding 'rna_tools/SecondaryStructure.py' 2026-03-13T22:05:21,343 adding 'rna_tools/Seq.py' 2026-03-13T22:05:21,344 adding 'rna_tools/__init__.py' 2026-03-13T22:05:21,346 adding 'rna_tools/_version.py' 2026-03-13T22:05:21,347 adding 'rna_tools/pytest.ini' 2026-03-13T22:05:21,401 adding 'rna_tools/rchie.png' 2026-03-13T22:05:21,405 adding 'rna_tools/rna_calc_fenergy.py' 2026-03-13T22:05:21,407 adding 'rna_tools/rna_cif2pdb.py' 2026-03-13T22:05:21,409 adding 'rna_tools/rna_dot2ct.py' 2026-03-13T22:05:21,410 adding 'rna_tools/rna_pdb_fetch.py' 2026-03-13T22:05:21,412 adding 'rna_tools/rna_pdb_fetch_header.py' 2026-03-13T22:05:21,414 adding 'rna_tools/rna_pdb_inspect.py' 2026-03-13T22:05:21,415 adding 'rna_tools/rna_pdb_replace.py' 2026-03-13T22:05:21,416 adding 'rna_tools/rna_pdb_seq.py' 2026-03-13T22:05:21,418 adding 'rna_tools/rna_pdb_seq2.py' 2026-03-13T22:05:21,423 adding 'rna_tools/rna_pdb_tools.py' 2026-03-13T22:05:21,424 adding 'rna_tools/rna_secondary_structure_prediction.py' 2026-03-13T22:05:21,426 adding 'rna_tools/rna_simrnaweb_download_job.py' 2026-03-13T22:05:21,428 adding 'rna_tools/rna_standardize.py' 2026-03-13T22:05:21,430 adding 'rna_tools/rna_tools_config.py' 2026-03-13T22:05:21,441 adding 'rna_tools/rna_tools_lib.py' 2026-03-13T22:05:21,443 adding 'rna_tools/rna_tools_test_all.py' 2026-03-13T22:05:21,445 adding 'rna_tools/rna_torsions.py' 2026-03-13T22:05:21,446 adding 'rna_tools/shell_rc.sh' 2026-03-13T22:05:21,447 adding 'rna_tools/stats.py' 2026-03-13T22:05:21,449 adding 'rna_tools/test.sh' 2026-03-13T22:05:21,450 adding 'rna_tools/update_readme.py' 2026-03-13T22:05:21,464 adding 'rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb' 2026-03-13T22:05:21,466 adding 'rna_tools/data/A.pdb' 2026-03-13T22:05:21,467 adding 'rna_tools/data/ACGU.pdb' 2026-03-13T22:05:21,469 adding 'rna_tools/data/C.pdb' 2026-03-13T22:05:21,470 adding 'rna_tools/data/G.pdb' 2026-03-13T22:05:21,472 adding 'rna_tools/data/PO3_inner.pdb' 2026-03-13T22:05:21,473 adding 'rna_tools/data/U.pdb' 2026-03-13T22:05:21,474 adding 'rna_tools/data/o2prim.pdb' 2026-03-13T22:05:21,476 adding 'rna_tools/data/op4.pdb' 2026-03-13T22:05:21,477 adding 'rna_tools/data/pdb_ids.txt' 2026-03-13T22:05:21,478 adding 'rna_tools/data/rna_pdb_errors.csv' 2026-03-13T22:05:21,479 adding 'rna_tools/data/shape.txt' 2026-03-13T22:05:21,481 adding 'rna_tools/tests/test_eval.py' 2026-03-13T22:05:21,482 adding 'rna_tools/tests/test_rna_ss_pred.sh' 2026-03-13T22:05:21,484 adding 'rna_tools/tests/test_rnafold.py' 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'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb' 2026-03-13T22:05:25,942 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb' 2026-03-13T22:05:25,944 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb' 2026-03-13T22:05:25,945 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb' 2026-03-13T22:05:25,946 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb' 2026-03-13T22:05:25,948 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb' 2026-03-13T22:05:25,949 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb' 2026-03-13T22:05:25,951 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb' 2026-03-13T22:05:25,952 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb' 2026-03-13T22:05:25,954 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb' 2026-03-13T22:05:25,956 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb' 2026-03-13T22:05:25,959 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb' 2026-03-13T22:05:25,961 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb' 2026-03-13T22:05:25,963 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb' 2026-03-13T22:05:25,964 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb' 2026-03-13T22:05:25,965 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb' 2026-03-13T22:05:25,967 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb' 2026-03-13T22:05:25,968 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb' 2026-03-13T22:05:25,970 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb' 2026-03-13T22:05:25,972 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb' 2026-03-13T22:05:25,973 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb' 2026-03-13T22:05:25,974 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb' 2026-03-13T22:05:25,976 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb' 2026-03-13T22:05:25,977 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb' 2026-03-13T22:05:25,979 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb' 2026-03-13T22:05:25,980 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb' 2026-03-13T22:05:25,982 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb' 2026-03-13T22:05:25,983 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb' 2026-03-13T22:05:25,986 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb' 2026-03-13T22:05:25,988 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb' 2026-03-13T22:05:25,989 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb' 2026-03-13T22:05:25,990 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb' 2026-03-13T22:05:25,992 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb' 2026-03-13T22:05:25,993 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb' 2026-03-13T22:05:25,995 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb' 2026-03-13T22:05:25,996 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb' 2026-03-13T22:05:25,998 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb' 2026-03-13T22:05:25,999 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb' 2026-03-13T22:05:26,001 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb' 2026-03-13T22:05:26,002 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb' 2026-03-13T22:05:26,004 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb' 2026-03-13T22:05:26,005 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb' 2026-03-13T22:05:26,007 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb' 2026-03-13T22:05:26,008 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb' 2026-03-13T22:05:26,010 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb' 2026-03-13T22:05:26,011 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb' 2026-03-13T22:05:26,013 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb' 2026-03-13T22:05:26,014 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb' 2026-03-13T22:05:26,016 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb' 2026-03-13T22:05:26,017 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb' 2026-03-13T22:05:26,019 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb' 2026-03-13T22:05:26,020 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb' 2026-03-13T22:05:26,021 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb' 2026-03-13T22:05:26,023 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb' 2026-03-13T22:05:26,024 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb' 2026-03-13T22:05:26,026 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb' 2026-03-13T22:05:26,027 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb' 2026-03-13T22:05:26,029 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb' 2026-03-13T22:05:26,030 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb' 2026-03-13T22:05:26,032 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb' 2026-03-13T22:05:26,033 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb' 2026-03-13T22:05:26,035 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb' 2026-03-13T22:05:26,036 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb' 2026-03-13T22:05:26,038 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb' 2026-03-13T22:05:26,039 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb' 2026-03-13T22:05:26,040 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb' 2026-03-13T22:05:26,042 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb' 2026-03-13T22:05:26,044 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb' 2026-03-13T22:05:26,045 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb' 2026-03-13T22:05:26,046 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb' 2026-03-13T22:05:26,048 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb' 2026-03-13T22:05:26,050 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb' 2026-03-13T22:05:26,051 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb' 2026-03-13T22:05:26,053 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb' 2026-03-13T22:05:26,054 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb' 2026-03-13T22:05:26,056 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb' 2026-03-13T22:05:26,058 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb' 2026-03-13T22:05:26,060 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb' 2026-03-13T22:05:26,062 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb' 2026-03-13T22:05:26,064 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb' 2026-03-13T22:05:26,066 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb' 2026-03-13T22:05:26,068 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb' 2026-03-13T22:05:26,070 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb' 2026-03-13T22:05:26,072 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb' 2026-03-13T22:05:26,075 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb' 2026-03-13T22:05:26,079 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb' 2026-03-13T22:05:26,082 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb' 2026-03-13T22:05:26,084 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb' 2026-03-13T22:05:26,087 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb' 2026-03-13T22:05:26,089 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb' 2026-03-13T22:05:26,091 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb' 2026-03-13T22:05:26,094 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb' 2026-03-13T22:05:26,096 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb' 2026-03-13T22:05:26,099 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb' 2026-03-13T22:05:26,101 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb' 2026-03-13T22:05:26,103 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb' 2026-03-13T22:05:26,106 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb' 2026-03-13T22:05:26,108 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb' 2026-03-13T22:05:26,110 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb' 2026-03-13T22:05:26,113 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb' 2026-03-13T22:05:26,115 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb' 2026-03-13T22:05:26,117 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb' 2026-03-13T22:05:26,119 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb' 2026-03-13T22:05:26,121 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb' 2026-03-13T22:05:26,123 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb' 2026-03-13T22:05:26,126 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb' 2026-03-13T22:05:26,128 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb' 2026-03-13T22:05:26,131 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb' 2026-03-13T22:05:26,133 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb' 2026-03-13T22:05:26,136 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb' 2026-03-13T22:05:26,139 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb' 2026-03-13T22:05:26,142 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb' 2026-03-13T22:05:26,146 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb' 2026-03-13T22:05:26,149 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb' 2026-03-13T22:05:26,152 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb' 2026-03-13T22:05:26,155 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb' 2026-03-13T22:05:26,158 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb' 2026-03-13T22:05:26,160 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb' 2026-03-13T22:05:26,162 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb' 2026-03-13T22:05:26,164 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb' 2026-03-13T22:05:26,166 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb' 2026-03-13T22:05:26,168 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb' 2026-03-13T22:05:26,170 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb' 2026-03-13T22:05:26,173 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb' 2026-03-13T22:05:26,175 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb' 2026-03-13T22:05:26,179 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb' 2026-03-13T22:05:26,182 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb' 2026-03-13T22:05:26,185 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb' 2026-03-13T22:05:26,187 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb' 2026-03-13T22:05:26,190 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb' 2026-03-13T22:05:26,192 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb' 2026-03-13T22:05:26,195 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb' 2026-03-13T22:05:26,197 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb' 2026-03-13T22:05:26,199 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb' 2026-03-13T22:05:26,201 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb' 2026-03-13T22:05:26,203 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb' 2026-03-13T22:05:26,205 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb' 2026-03-13T22:05:26,208 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb' 2026-03-13T22:05:26,210 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb' 2026-03-13T22:05:26,212 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb' 2026-03-13T22:05:26,214 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb' 2026-03-13T22:05:26,216 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb' 2026-03-13T22:05:26,218 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb' 2026-03-13T22:05:26,220 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb' 2026-03-13T22:05:26,222 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb' 2026-03-13T22:05:26,224 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb' 2026-03-13T22:05:26,226 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb' 2026-03-13T22:05:26,228 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb' 2026-03-13T22:05:26,230 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb' 2026-03-13T22:05:26,233 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb' 2026-03-13T22:05:26,235 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb' 2026-03-13T22:05:26,237 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb' 2026-03-13T22:05:26,240 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb' 2026-03-13T22:05:26,242 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb' 2026-03-13T22:05:26,244 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb' 2026-03-13T22:05:26,247 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb' 2026-03-13T22:05:26,250 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb' 2026-03-13T22:05:26,252 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb' 2026-03-13T22:05:26,254 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb' 2026-03-13T22:05:26,257 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb' 2026-03-13T22:05:26,258 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb' 2026-03-13T22:05:26,259 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb' 2026-03-13T22:05:26,261 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb' 2026-03-13T22:05:26,262 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb' 2026-03-13T22:05:26,264 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb' 2026-03-13T22:05:26,265 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb' 2026-03-13T22:05:26,266 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb' 2026-03-13T22:05:26,268 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb' 2026-03-13T22:05:26,269 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb' 2026-03-13T22:05:26,271 adding 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2026-03-13T22:05:36,814 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png' 2026-03-13T22:05:36,816 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png' 2026-03-13T22:05:36,817 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png' 2026-03-13T22:05:36,819 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png' 2026-03-13T22:05:36,820 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png' 2026-03-13T22:05:36,822 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png' 2026-03-13T22:05:36,824 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png' 2026-03-13T22:05:36,826 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png' 2026-03-13T22:05:36,828 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png' 2026-03-13T22:05:36,830 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png' 2026-03-13T22:05:36,833 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js' 2026-03-13T22:05:36,846 adding 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2026-03-13T22:05:36,891 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js' 2026-03-13T22:05:36,894 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css' 2026-03-13T22:05:36,895 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif' 2026-03-13T22:05:36,897 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif' 2026-03-13T22:05:36,898 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif' 2026-03-13T22:05:36,900 adding 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2026-03-13T22:05:36,936 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js' 2026-03-13T22:05:36,940 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css' 2026-03-13T22:05:36,942 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css' 2026-03-13T22:05:36,953 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css' 2026-03-13T22:05:36,962 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css' 2026-03-13T22:05:36,966 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png' 2026-03-13T22:05:36,968 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png' 2026-03-13T22:05:36,975 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js' 2026-03-13T22:05:36,978 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js' 2026-03-13T22:05:36,991 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js' 2026-03-13T22:05:36,994 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT' 2026-03-13T22:05:36,995 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md' 2026-03-13T22:05:36,997 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js' 2026-03-13T22:05:36,999 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js' 2026-03-13T22:05:37,001 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html' 2026-03-13T22:05:37,002 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php' 2026-03-13T22:05:37,011 adding 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2026-03-13T22:05:37,026 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css' 2026-03-13T22:05:37,028 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js' 2026-03-13T22:05:37,062 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif' 2026-03-13T22:05:37,098 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb' 2026-03-13T22:05:37,100 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt' 2026-03-13T22:05:37,103 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb' 2026-03-13T22:05:37,124 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif' 2026-03-13T22:05:37,140 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb' 2026-03-13T22:05:37,151 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb' 2026-03-13T22:05:37,163 adding 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2026-03-13T22:05:38,085 adding 'rna_tools/tools/workflow/xxdownload_job_and_process.py' 2026-03-13T22:05:38,093 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/clarna.py' 2026-03-13T22:05:38,095 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/diffpdb.py' 2026-03-13T22:05:38,097 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/pdbs_measure_atom_dists.py' 2026-03-13T22:05:38,098 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/pymol_color_by_conserv.py' 2026-03-13T22:05:38,099 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/pymol_preview_generator.py' 2026-03-13T22:05:38,101 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/pymol_preview_install.py' 2026-03-13T22:05:38,102 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/random_assignment_of_nucleotides.py' 2026-03-13T22:05:38,104 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/renum_pdb_to_aln.py' 2026-03-13T22:05:38,105 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/reverse.py' 2026-03-13T22:05:38,107 adding 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'rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd.py' 2026-03-13T22:05:38,140 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_all_vs_all.py' 2026-03-13T22:05:38,145 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_biopython.py' 2026-03-13T22:05:38,147 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_multi_targets.py' 2026-03-13T22:05:38,149 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_calc_rmsd_trafl.py' 2026-03-13T22:05:38,150 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_cif2pdb.py' 2026-03-13T22:05:38,154 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_clanstix.py' 2026-03-13T22:05:38,155 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_clarna2graph.py' 2026-03-13T22:05:38,157 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_clarna_app.py' 2026-03-13T22:05:38,162 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_clarna_compare.py' 2026-03-13T22:05:38,167 adding 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2026-03-13T22:05:38,183 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_ec2x.py' 2026-03-13T22:05:38,186 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_filter.py' 2026-03-13T22:05:38,187 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_gromacs_ready.py' 2026-03-13T22:05:38,189 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_helix_vis.py' 2026-03-13T22:05:38,190 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_kd2dG.py' 2026-03-13T22:05:38,191 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_kd2pkd.py' 2026-03-13T22:05:38,193 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_md.py' 2026-03-13T22:05:38,194 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_minimize.py' 2026-03-13T22:05:38,196 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_analyzegeometry.py' 2026-03-13T22:05:38,197 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_clashscore.py' 2026-03-13T22:05:38,201 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_collect.py' 2026-03-13T22:05:38,202 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_dfire.py' 2026-03-13T22:05:38,204 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_eSCORE.py' 2026-03-13T22:05:38,206 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_exp.py' 2026-03-13T22:05:38,209 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_farfar2.py' 2026-03-13T22:05:38,210 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_farna.py' 2026-03-13T22:05:38,212 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_plot.py' 2026-03-13T22:05:38,213 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_rasp.py' 2026-03-13T22:05:38,214 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_remote.sh' 2026-03-13T22:05:38,216 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_rna3dcnn.py' 2026-03-13T22:05:38,217 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_rnakb.py' 2026-03-13T22:05:38,218 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_rsRNASP.py' 2026-03-13T22:05:38,220 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_score.py' 2026-03-13T22:05:38,221 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_simrna.py' 2026-03-13T22:05:38,223 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_mq_wx_collect.py' 2026-03-13T22:05:38,227 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_ok' 2026-03-13T22:05:38,228 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_ok_mail.py' 2026-03-13T22:05:38,230 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_openfold_json_to_cif.py' 2026-03-13T22:05:38,231 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pairs2SimRNArestrs.py' 2026-03-13T22:05:38,233 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pairs_diff.py' 2026-03-13T22:05:38,234 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_edit_occupancy_bfactor.py' 2026-03-13T22:05:38,236 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_fetch.py' 2026-03-13T22:05:38,238 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_fetch_header.py' 2026-03-13T22:05:38,239 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_inspect.py' 2026-03-13T22:05:38,240 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_merge_into_one.py' 2026-03-13T22:05:38,242 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_merge_structure_with_fragments.py' 2026-03-13T22:05:38,244 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_replace.py' 2026-03-13T22:05:38,245 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_seq.py' 2026-03-13T22:05:38,251 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pdb_tools.py' 2026-03-13T22:05:38,252 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pk_simrna_to_one_line.py' 2026-03-13T22:05:38,254 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pkd2dG.py' 2026-03-13T22:05:38,255 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_pkd2kd.py' 2026-03-13T22:05:38,258 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_alignment_bounds.py' 2026-03-13T22:05:38,259 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_boxplotlike.py' 2026-03-13T22:05:38,261 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_dendogram.py' 2026-03-13T22:05:38,262 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_density.py' 2026-03-13T22:05:38,264 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_heatmap.py' 2026-03-13T22:05:38,265 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_plot_hist.py' 2026-03-13T22:05:38,266 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_prediction_significance.py' 2026-03-13T22:05:38,268 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_refinement.py' 2026-03-13T22:05:38,270 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_check_progress.py' 2026-03-13T22:05:38,272 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_cluster.py' 2026-03-13T22:05:38,274 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_extract.py' 2026-03-13T22:05:38,275 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_extract_lowscore_decoys.py' 2026-03-13T22:05:38,277 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_get_score.py' 2026-03-13T22:05:38,279 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_head.py' 2026-03-13T22:05:38,281 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_min.py' 2026-03-13T22:05:38,282 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_n.py' 2026-03-13T22:05:38,284 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_run.py' 2026-03-13T22:05:38,285 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_silent_file_sort_and_select.py' 2026-03-13T22:05:38,287 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_silent_random.py' 2026-03-13T22:05:38,288 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_rosetta_silent_split.py' 2026-03-13T22:05:38,289 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_sali2dotbracket.py' 2026-03-13T22:05:38,291 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_secondary_structure_prediction.py' 2026-03-13T22:05:38,293 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_simrna_cluster.py' 2026-03-13T22:05:38,294 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_simrna_extract.py' 2026-03-13T22:05:38,296 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_simrna_lowest.py' 2026-03-13T22:05:38,298 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_simrnaweb_download_job.py' 2026-03-13T22:05:38,299 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_ss_get_bps.py' 2026-03-13T22:05:38,301 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_standardize.py' 2026-03-13T22:05:38,303 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_test_cuda.py' 2026-03-13T22:05:38,304 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_tools_demo.py' 2026-03-13T22:05:38,305 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_tools_which.py' 2026-03-13T22:05:38,307 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_torsions.py' 2026-03-13T22:05:38,308 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_n.py' 2026-03-13T22:05:38,310 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_nohetm.py' 2026-03-13T22:05:38,311 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_traj_range.py' 2026-03-13T22:05:38,313 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_workflow.py' 2026-03-13T22:05:38,316 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/rna_x3dna.py' 2026-03-13T22:05:38,318 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/select_seq_fromBLAStn_6outfm.py' 2026-03-13T22:05:38,320 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/translate.py' 2026-03-13T22:05:38,322 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/triplexibility.py' 2026-03-13T22:05:38,324 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/triplexibility2.py' 2026-03-13T22:05:38,326 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/trx_mutagen.py' 2026-03-13T22:05:38,327 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/trx_mutagen_allvsall.py' 2026-03-13T22:05:38,329 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/trx_score.py' 2026-03-13T22:05:38,330 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/trx_score_allvsall.py' 2026-03-13T22:05:38,332 adding 'rna_tools-3.27.1.post0.dev21.data/scripts/trx_score_onCol.py' 2026-03-13T22:05:38,335 adding 'tests/__init__.py' 2026-03-13T22:05:38,337 adding 'tests/test_module.py' 2026-03-13T22:05:38,343 adding 'rna_tools-3.27.1.post0.dev21.dist-info/LICENSE' 2026-03-13T22:05:38,347 adding 'rna_tools-3.27.1.post0.dev21.dist-info/METADATA' 2026-03-13T22:05:38,349 adding 'rna_tools-3.27.1.post0.dev21.dist-info/WHEEL' 2026-03-13T22:05:38,351 adding 'rna_tools-3.27.1.post0.dev21.dist-info/top_level.txt' 2026-03-13T22:05:38,386 adding 'rna_tools-3.27.1.post0.dev21.dist-info/RECORD' 2026-03-13T22:05:39,087 removing build/bdist.linux-armv7l/wheel 2026-03-13T22:05:40,938 Building wheel for rna-tools (pyproject.toml): finished with status 'done' 2026-03-13T22:05:42,615 Created wheel for rna-tools: filename=rna_tools-3.27.1.post0.dev21-py3-none-any.whl size=58421238 sha256=e6830257ee19c092df58915d0346c2f6982900f1681194c48de0f0f214d84116 2026-03-13T22:05:42,616 Stored in directory: /tmp/pip-ephem-wheel-cache-zyraenay/wheels/c7/cf/a7/600f37b5ab58967bccc11be864aaf0cf425a8d5b95518ba88b 2026-03-13T22:05:42,704 Successfully built rna-tools 2026-03-13T22:05:44,341 Removed build tracker: '/tmp/pip-build-tracker-_b7sh3za'