2026-03-13T22:09:06,315 Created temporary directory: /tmp/pip-ephem-wheel-cache-h0ak3zo_ 2026-03-13T22:09:06,317 Created temporary directory: /tmp/pip-build-tracker-zxzkgclj 2026-03-13T22:09:06,317 Initialized build tracking at /tmp/pip-build-tracker-zxzkgclj 2026-03-13T22:09:06,318 Created build tracker: /tmp/pip-build-tracker-zxzkgclj 2026-03-13T22:09:06,318 Entered build tracker: /tmp/pip-build-tracker-zxzkgclj 2026-03-13T22:09:06,319 Created temporary directory: /tmp/pip-wheel-o0qj196o 2026-03-13T22:09:06,322 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T22:09:06,324 Created temporary directory: /tmp/pip-ephem-wheel-cache-r0mo61u0 2026-03-13T22:09:06,346 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T22:09:06,349 2 location(s) to search for versions of rna-tools: 2026-03-13T22:09:06,349 * https://pypi.org/simple/rna-tools/ 2026-03-13T22:09:06,349 * https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:09:06,350 Fetching project page and analyzing links: https://pypi.org/simple/rna-tools/ 2026-03-13T22:09:06,351 Getting page https://pypi.org/simple/rna-tools/ 2026-03-13T22:09:06,352 Found index url https://pypi.org/simple 2026-03-13T22:09:06,493 Fetched page https://pypi.org/simple/rna-tools/ as application/vnd.pypi.simple.v1+json 2026-03-13T22:09:06,517 Skipping link: No binaries permitted for rna-tools: 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2026-03-13T22:09:06,527 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/5f/b2/062399b540ef2a40520d6d912209721ee7fc1268abcff3c304fc5fcde93d/rna_tools-3.3.2-py2-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,528 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/63/3d/c5ec1795c49e47d1a2c8ce53fd6af723be70ea726eefa1c20cbcba793fcc/rna_tools-3.4.0-py2-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,528 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/26/fd/a1b2383b98af42ac57521a2d247f301d508afd5dd63d02974a6bece261ce/rna_tools-3.4.0-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,529 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/31/38/4544bbb5588b52df0910454554b071443046560010b372f3dd09379d1cc0/rna_tools-3.4.1-py2-none-any.whl (from 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2026-03-13T22:09:06,536 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e0/92/4010b5d4bacc7047fb68d0eb51aa21d18968bead37b87bad04c07730b855/rna_tools-3.5.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,537 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ac/4c/606fe4ea704d03e186e82e2cc94e01f4c895e9c1cb0dac8d72bd613b3644/rna_tools-3.5.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,537 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f6/e8/647108209022fa3ff2b69af1ed16a861981096211df6efe0d8dc1da056d5/rna_tools-3.6-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,538 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/03/85/c816e24a9acd50ab582bfba3048f23f1a59a012cd8e979c93b4634027b35/rna_tools-3.6.1-py3-none-any.whl (from 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2026-03-13T22:09:06,545 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/06/33/f1200ba13560982209354d0f0dc5e7497ade51d176f68a8dbcc229fe1085/rna_tools-3.7.12-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,545 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/71/528a9fa0822567e48d0e5fd72dacdf52547145fcf5dcc5f09536bd255f49/rna_tools-3.7.13-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,546 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/74/8c/77cfd3f1294bc4935f10f93c6e69a86189948fd06d2e31e6d48e24a6063a/rna_tools-3.7.14-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,546 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1e/fe/1c9720fa09b24440bb9508d8a2673892884c5fc5d5b4bff841bd886761c5/rna_tools-3.7.15-py3-none-any.whl (from 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2026-03-13T22:09:06,554 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/dd/c2/ffe7c96c9e912798393a688c112e755a001ffa521d885176976b48af6fc6/rna_tools-3.8.11-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,554 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ca/e2/fd4e35ad632d744c9e649f94344d4ab386980ae8a9d4bc22eb1b6d9f714e/rna_tools-3.8.11.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,555 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/7b/0f/5d2c73ef6ea38577d7edcf672f6c5a824ec5dbdcc8d792459cc7388dffa3/rna_tools-3.8.11.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,555 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/fa/cf/c680eae9f1392cab967fbe874217e831caae3e98fca3a9371bd98c3d5826/rna_tools-3.8.12-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,556 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/21/be/f365909ad856cc82358fb1007a5a6c2ee3427df19657f6234c5f1a128d62/rna_tools-3.8.12.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,557 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ac/cc/c2e8ab56ec3e8afea1a1d1e967056886b039003d3888281d830739fafecf/rna_tools-3.8.13-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,557 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/c4/78/078f7ea5add75c135733e1365612361f8a6ee6077af018ed2890f409cddd/rna_tools-3.8.13.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,558 Skipping 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2026-03-13T22:09:06,572 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/56/6c/bd8607e69de5e63f72decf4398bee9c90ee391eff6d4451005de8156ca15/rna_tools-3.19-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,573 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ae/5f/e57ac244bd51cff84868a22eb6a5faf2c1b6b616bcd6b4e9e47c3e1f1c8b/rna_tools-3.20-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,573 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/8b/01/201b394e887e5e7f5b719ed76710649177c687c99e7223a9ea7943266e0e/rna_tools-3.20.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,574 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/1f/f1/2b93875467d8768d8d5964319bf3a942135385be9d4f0ce6a5ff214b7452/rna_tools-3.20.2-py3-none-any.whl (from 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No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d3/86/393db491384fe40b69b2af4035bd6e45f91d5e184d8e7b0e8c9b21cdcc53/rna_tools-3.22.5-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,580 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/54/f7/84af3db9a8d2337c6af632fff3194d196e534dfd47ba2dd69f515511be9f/rna_tools-3.23.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,580 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/77/4c/d5eddc44da8b8f903179877d2e4fd21768acc11776d222be5030fd95d8c7/rna_tools-3.23.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,581 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f7/04/4f4271af4cec16f9d14ad605bb6b934f210cfcf97af831e9e9de6b87c332/rna_tools-3.25-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,581 Found link https://files.pythonhosted.org/packages/a8/ed/7a195c3da380f259f526fa808c00ecb2b791636683aa082db6b12fd234cd/rna_tools-3.25.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25 2026-03-13T22:09:06,582 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/e5/e2/8086e4c9ac1f7740f9466806d68780855fb1c58a5b90de975727a41b0fe0/rna_tools-3.25.post0.dev2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,582 Found link https://files.pythonhosted.org/packages/fc/ca/ced6c944bcb743064c9a86ca07aa26129a14c5eb62596f797b3b2f20a0e2/rna_tools-3.25.post0.dev2.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.post0.dev2 2026-03-13T22:09:06,583 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/02/81/d232686bd8939c4a7019e89df66e8f44f9f2ac7e855dd21faa79cffee769/rna_tools-3.25.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,584 Found link https://files.pythonhosted.org/packages/cd/55/f0b5239e24d4bbd2af7863a8c64c4b795a4d3deba50400b4dc3e85ee584c/rna_tools-3.25.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.1 2026-03-13T22:09:06,584 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/d0/be/5fc036fc5c934a1d636d59590b2c953a85ed521695f44a853441e49585f3/rna_tools-3.25.1.post0.dev1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,585 Found link https://files.pythonhosted.org/packages/00/11/0caec019f31c20c14566b265c0541d22cce934683957cde7b3a968cea7c3/rna_tools-3.25.1.post0.dev1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.1.post0.dev1 2026-03-13T22:09:06,586 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/cd/19/cf3aba43c9cbce61b3b94cf293e0e38bac65c7872eb714548d84b44462cd/rna_tools-3.25.3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,587 Found link https://files.pythonhosted.org/packages/8e/0e/dec7fcbaa1c11e52a2a4c9ade27386bd52043aa8e99989840b47a23774a2/rna_tools-3.25.3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.3 2026-03-13T22:09:06,588 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/f9/31/9a2c82a0e5ea19b639f0b32c2ce4095b7614721edd39c296e9e01351abbe/rna_tools-3.25.4-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,589 Found link https://files.pythonhosted.org/packages/9b/83/23c17faaf88b230aef89f9267d550f1e1f733bc39420c0b2a99fdd266400/rna_tools-3.25.4.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.25.4 2026-03-13T22:09:06,590 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/24/e9/aac4dbd96a5ca08a80501fc729717cba92e19d00c13e84701a8c0a526004/rna_tools-3.26-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,590 Found link https://files.pythonhosted.org/packages/76/42/2335539142cacb855a106e5ae3d29a222e4d07f3f04f191d063e8a6752b8/rna_tools-3.26.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.26 2026-03-13T22:09:06,592 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/a2/a8/ccde277f837dfd1d8c2de1a90d739f94eaf458ac8c732afc273824cec49f/rna_tools-3.27.post0.dev3-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,592 Found link https://files.pythonhosted.org/packages/ff/02/8c7fed3b483197fded9567fdbcf783e9b8b0debcb26196a9638fe9eae58d/rna_tools-3.27.post0.dev3.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.post0.dev3 2026-03-13T22:09:06,593 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/ea/5b/ed6a000bc88c7024c124e3baeed34de23ab8bee8a7f95e0e85f005f309bf/rna_tools-3.27.1-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,594 Found link https://files.pythonhosted.org/packages/6a/58/281f7fc35a2cf9bc253fb704988e1e17baafe74ccb70b7b86d605b4c3c05/rna_tools-3.27.1.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.1 2026-03-13T22:09:06,595 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/bb/b5/9a0b0229128bf45033d34a13faaec31a4d55ccf419f5e212c9792aa351e2/rna_tools-3.27.1.post0.dev21-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,595 Found link https://files.pythonhosted.org/packages/c1/8f/a0690346991f44c2ee30ef924f446b5370d68c54c8ccdb2c09d97e930c0c/rna_tools-3.27.1.post0.dev21.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.1.post0.dev21 2026-03-13T22:09:06,596 Skipping link: No binaries permitted for rna-tools: https://files.pythonhosted.org/packages/49/5f/15ebedb87bbe27e1a48d1c0633e8141ef12e87d00054d1dde907cacad6e6/rna_tools-3.27.2-py3-none-any.whl (from https://pypi.org/simple/rna-tools/) 2026-03-13T22:09:06,597 Found link https://files.pythonhosted.org/packages/ce/da/db01dd43a575c45a02f0962ce189fde58ce5c467b4a17773a7f444fdf7b6/rna_tools-3.27.2.tar.gz (from https://pypi.org/simple/rna-tools/), version: 3.27.2 2026-03-13T22:09:06,598 Fetching project page and analyzing links: https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:09:06,599 Getting page https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:09:06,601 Found index url https://www.piwheels.org/simple 2026-03-13T22:09:06,791 Fetched page https://www.piwheels.org/simple/rna-tools/ as text/html 2026-03-13T22:09:06,796 Skipping link: No binaries permitted for rna-tools: https://www.piwheels.org/simple/rna-tools/rna_tools-3.27.1.post0.dev21-py3-none-any.whl#sha256=e6830257ee19c092df58915d0346c2f6982900f1681194c48de0f0f214d84116 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,796 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.27.1-py3-none-any.whl#sha256=b5a4e359452a1ee4f7bfbac7f389179ff0af44d1c89a2305c95c4fef9d431cde (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,797 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.27.post0.dev3-py3-none-any.whl#sha256=9da4a01e580dc3d8633e390a1113c6592051ea1eea774c49f5cfab7284ef0bbf (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,797 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.3-py3-none-any.whl#sha256=165a43111ce2ee359c011e3c133fb52b70f9bb2fe74ac0c44ec118cafc40798d (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,798 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.1.post0.dev1-py3-none-any.whl#sha256=8703a1ac6cd850cf569abe5186cb3e5b63c34b869f74de3cbc7c5c5acc90e8b8 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,799 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.1-py3-none-any.whl#sha256=31a0a058078b01e82235ae72c41ef99cdeae2bfdf03bc1faec83fc61666995d6 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,800 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.25.post0.dev2-py3-none-any.whl#sha256=465af7e799388e527a2e2b0436144da336a2d02c006bf36c6ae8c2c8ee4bd120 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,800 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/UNKNOWN-0%2Bunknown-py3-none-any.whl#sha256=b4214c42117c74da3961ab3bbaf3ce3e12ea386e102aecb92e8e47c607e842dc (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,801 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.4-py3-none-any.whl#sha256=1194ddbf480426f804e230eb711eb705a79f41efaf61679c966fd6b7fec65e17 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,801 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.3-py3-none-any.whl#sha256=1d45105a5c8cc161b13b088a8e903b5d239701ca023758c17a591a0a0dfb86bb (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,802 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.2-py3-none-any.whl#sha256=7b92483d69eb10c0a144b20d4a546bc79db74de7e1340d8e204c697b1b7b5e20 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,802 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-3.1.1-py3-none-any.whl#sha256=c9c26356bd9c8c2b8fef932367a9c0f2982e68353ec6b07872c6762d1654be50 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,803 Skipping link: No binaries permitted for rna-tools: https://archive1.piwheels.org/simple/rna-tools/rna_tools-2.25.post0.dev1-py3-none-any.whl#sha256=069317b2d39ca3013977ae7584d23defb1894f6bb42522298a49962020a300f2 (from https://www.piwheels.org/simple/rna-tools/) 2026-03-13T22:09:06,804 Skipping link: not a file: https://www.piwheels.org/simple/rna-tools/ 2026-03-13T22:09:06,804 Skipping link: not a file: https://pypi.org/simple/rna-tools/ 2026-03-13T22:09:06,826 Given no hashes to check 1 links for project 'rna-tools': discarding no candidates 2026-03-13T22:09:06,846 Collecting rna-tools==3.27.2 2026-03-13T22:09:06,849 Created temporary directory: /tmp/pip-unpack-pr0b4nk5 2026-03-13T22:09:06,986 Downloading rna_tools-3.27.2.tar.gz (57.5 MB) 2026-03-13T22:09:17,476 Added rna-tools==3.27.2 from https://files.pythonhosted.org/packages/ce/da/db01dd43a575c45a02f0962ce189fde58ce5c467b4a17773a7f444fdf7b6/rna_tools-3.27.2.tar.gz to build tracker '/tmp/pip-build-tracker-zxzkgclj' 2026-03-13T22:09:17,481 Created temporary directory: /tmp/pip-build-env-4dep8bqe 2026-03-13T22:09:17,486 Installing build dependencies: started 2026-03-13T22:09:17,487 Running command pip subprocess to install build dependencies 2026-03-13T22:09:18,704 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-13T22:09:19,284 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-13T22:09:19,310 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-13T22:09:21,159 Collecting setuptools<72 2026-03-13T22:09:21,348 Using cached https://www.piwheels.org/simple/setuptools/setuptools-71.1.0-py3-none-any.whl (2.3 MB) 2026-03-13T22:09:21,652 Collecting wheel 2026-03-13T22:09:21,668 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-13T22:09:21,770 Collecting versioneer 2026-03-13T22:09:21,791 Using cached https://www.piwheels.org/simple/versioneer/versioneer-0.29-py3-none-any.whl (46 kB) 2026-03-13T22:09:21,974 Collecting packaging>=24.0 2026-03-13T22:09:21,994 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-13T22:09:24,977 Installing collected packages: versioneer, setuptools, packaging, wheel 2026-03-13T22:09:25,010 Creating /tmp/pip-build-env-4dep8bqe/overlay/local/bin 2026-03-13T22:09:25,012 changing mode of /tmp/pip-build-env-4dep8bqe/overlay/local/bin/versioneer to 755 2026-03-13T22:09:29,486 changing mode of /tmp/pip-build-env-4dep8bqe/overlay/local/bin/wheel to 755 2026-03-13T22:09:29,518 Successfully installed packaging-26.0 setuptools-71.1.0 versioneer-0.29 wheel-0.46.3 2026-03-13T22:09:29,804 Installing build dependencies: finished with status 'done' 2026-03-13T22:09:29,811 Getting requirements to build wheel: started 2026-03-13T22:09:29,812 Running command Getting requirements to build wheel 2026-03-13T22:09:30,530 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:09:30,530 !! 2026-03-13T22:09:30,531 ******************************************************************************** 2026-03-13T22:09:30,532 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:09:30,532 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:09:30,533 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:09:30,534 calls to avoid build errors in the future. 2026-03-13T22:09:30,535 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:09:30,536 ******************************************************************************** 2026-03-13T22:09:30,537 !! 2026-03-13T22:09:30,537 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:09:30,592 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:30,593 Try to load it from setup.cfg 2026-03-13T22:09:30,594 running egg_info 2026-03-13T22:09:30,600 writing rna_tools.egg-info/PKG-INFO 2026-03-13T22:09:30,604 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-03-13T22:09:30,606 writing requirements to rna_tools.egg-info/requires.txt 2026-03-13T22:09:30,607 writing top-level names to rna_tools.egg-info/top_level.txt 2026-03-13T22:09:30,720 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:30,997 reading manifest template 'MANIFEST.in' 2026-03-13T22:09:31,826 adding license file 'LICENSE' 2026-03-13T22:09:31,913 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:31,936 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:31,937 Try to load it from setup.cfg 2026-03-13T22:09:32,030 Getting requirements to build wheel: finished with status 'done' 2026-03-13T22:09:32,033 Created temporary directory: /tmp/pip-modern-metadata-3uecwxpo 2026-03-13T22:09:32,035 Preparing metadata (pyproject.toml): started 2026-03-13T22:09:32,037 Running command Preparing metadata (pyproject.toml) 2026-03-13T22:09:32,721 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:09:32,721 !! 2026-03-13T22:09:32,722 ******************************************************************************** 2026-03-13T22:09:32,723 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:09:32,723 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:09:32,725 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:09:32,725 calls to avoid build errors in the future. 2026-03-13T22:09:32,726 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:09:32,726 ******************************************************************************** 2026-03-13T22:09:32,727 !! 2026-03-13T22:09:32,728 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:09:32,751 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:32,752 Try to load it from setup.cfg 2026-03-13T22:09:32,752 running dist_info 2026-03-13T22:09:32,753 creating /tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info 2026-03-13T22:09:32,760 writing /tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/PKG-INFO 2026-03-13T22:09:32,765 writing dependency_links to /tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/dependency_links.txt 2026-03-13T22:09:32,767 writing requirements to /tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/requires.txt 2026-03-13T22:09:32,768 writing top-level names to /tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/top_level.txt 2026-03-13T22:09:32,769 writing manifest file '/tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:32,867 reading manifest file '/tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:32,869 reading manifest template 'MANIFEST.in' 2026-03-13T22:09:33,612 adding license file 'LICENSE' 2026-03-13T22:09:33,675 writing manifest file '/tmp/pip-modern-metadata-3uecwxpo/rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:33,698 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:33,699 Try to load it from setup.cfg 2026-03-13T22:09:33,699 creating '/tmp/pip-modern-metadata-3uecwxpo/rna_tools-3.27.2.dist-info' 2026-03-13T22:09:33,863 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-13T22:09:33,870 Source in /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9 has version 3.27.2, which satisfies requirement rna-tools==3.27.2 from https://files.pythonhosted.org/packages/ce/da/db01dd43a575c45a02f0962ce189fde58ce5c467b4a17773a7f444fdf7b6/rna_tools-3.27.2.tar.gz 2026-03-13T22:09:33,871 Removed rna-tools==3.27.2 from https://files.pythonhosted.org/packages/ce/da/db01dd43a575c45a02f0962ce189fde58ce5c467b4a17773a7f444fdf7b6/rna_tools-3.27.2.tar.gz from build tracker '/tmp/pip-build-tracker-zxzkgclj' 2026-03-13T22:09:33,879 Created temporary directory: /tmp/pip-unpack-zebnnsqf 2026-03-13T22:09:33,880 Building wheels for collected packages: rna-tools 2026-03-13T22:09:33,885 Created temporary directory: /tmp/pip-wheel-u9u1g52h 2026-03-13T22:09:33,885 Destination directory: /tmp/pip-wheel-u9u1g52h 2026-03-13T22:09:33,887 Building wheel for rna-tools (pyproject.toml): started 2026-03-13T22:09:33,889 Running command Building wheel for rna-tools (pyproject.toml) 2026-03-13T22:09:34,536 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:458: SetuptoolsDeprecationWarning: Invalid dash-separated options 2026-03-13T22:09:34,536 !! 2026-03-13T22:09:34,537 ******************************************************************************** 2026-03-13T22:09:34,538 Usage of dash-separated 'description-file' will not be supported in future 2026-03-13T22:09:34,539 versions. Please use the underscore name 'description_file' instead. 2026-03-13T22:09:34,540 This deprecation is overdue, please update your project and remove deprecated 2026-03-13T22:09:34,541 calls to avoid build errors in the future. 2026-03-13T22:09:34,542 See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. 2026-03-13T22:09:34,543 ******************************************************************************** 2026-03-13T22:09:34,544 !! 2026-03-13T22:09:34,544 opt = self.warn_dash_deprecation(opt, section) 2026-03-13T22:09:34,580 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:34,581 Try to load it from setup.cfg 2026-03-13T22:09:34,581 running bdist_wheel 2026-03-13T22:09:34,600 running build 2026-03-13T22:09:34,601 running build_py 2026-03-13T22:09:34,607 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:34,607 Try to load it from setup.cfg 2026-03-13T22:09:34,608 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:34,608 Try to load it from setup.cfg 2026-03-13T22:09:34,608 creating build 2026-03-13T22:09:34,609 creating build/lib 2026-03-13T22:09:34,609 creating build/lib/tests 2026-03-13T22:09:34,610 copying tests/__init__.py -> build/lib/tests 2026-03-13T22:09:34,611 copying tests/test_module.py -> build/lib/tests 2026-03-13T22:09:34,614 creating build/lib/rna_tools 2026-03-13T22:09:34,614 copying rna_tools/_version.py -> build/lib/rna_tools 2026-03-13T22:09:34,616 copying rna_tools/__init__.py -> build/lib/rna_tools 2026-03-13T22:09:34,618 copying rna_tools/rna_tools_lib.py -> build/lib/rna_tools 2026-03-13T22:09:34,622 copying rna_tools/rna_pdb_inspect.py -> build/lib/rna_tools 2026-03-13T22:09:34,624 copying rna_tools/rna_pdb_replace.py -> build/lib/rna_tools 2026-03-13T22:09:34,625 copying rna_tools/Seq.py -> build/lib/rna_tools 2026-03-13T22:09:34,628 copying rna_tools/RfamSearch.py -> build/lib/rna_tools 2026-03-13T22:09:34,630 copying rna_tools/stats.py -> build/lib/rna_tools 2026-03-13T22:09:34,631 copying rna_tools/rna_cif2pdb.py -> build/lib/rna_tools 2026-03-13T22:09:34,634 copying rna_tools/rna_torsions.py -> build/lib/rna_tools 2026-03-13T22:09:34,635 copying rna_tools/rna_dot2ct.py -> build/lib/rna_tools 2026-03-13T22:09:34,637 copying rna_tools/rna_tools_test_all.py -> build/lib/rna_tools 2026-03-13T22:09:34,639 copying rna_tools/rna_tools_config.py -> build/lib/rna_tools 2026-03-13T22:09:34,641 copying rna_tools/rna_simrnaweb_download_job.py -> build/lib/rna_tools 2026-03-13T22:09:34,643 copying rna_tools/BlastPDB.py -> build/lib/rna_tools 2026-03-13T22:09:34,645 copying rna_tools/rna_pdb_fetch_header.py -> build/lib/rna_tools 2026-03-13T22:09:34,647 copying rna_tools/rna_standardize.py -> build/lib/rna_tools 2026-03-13T22:09:34,649 copying rna_tools/update_readme.py -> build/lib/rna_tools 2026-03-13T22:09:34,651 copying rna_tools/rna_pdb_seq2.py -> build/lib/rna_tools 2026-03-13T22:09:34,653 copying rna_tools/rna_calc_fenergy.py -> build/lib/rna_tools 2026-03-13T22:09:34,655 copying rna_tools/rna_secondary_structure_prediction.py -> build/lib/rna_tools 2026-03-13T22:09:34,656 copying rna_tools/rna_pdb_tools.py -> build/lib/rna_tools 2026-03-13T22:09:34,659 copying rna_tools/rna_pdb_seq.py -> build/lib/rna_tools 2026-03-13T22:09:34,661 copying rna_tools/rna_pdb_fetch.py -> build/lib/rna_tools 2026-03-13T22:09:34,664 copying rna_tools/SecondaryStructure.py -> build/lib/rna_tools 2026-03-13T22:09:34,666 creating build/lib/rna_tools/tools 2026-03-13T22:09:34,667 copying rna_tools/tools/__init__.py -> build/lib/rna_tools/tools 2026-03-13T22:09:34,669 creating build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,670 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,672 copying rna_tools/tools/rna_calc_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,674 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,676 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,678 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,680 copying rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,683 copying rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:34,686 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:34,686 copying rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:34,688 copying rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:34,690 copying rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:34,692 copying rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:34,695 creating build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,696 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,698 copying rna_tools/tools/rna_rosetta/__init__.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,699 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,701 copying rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,703 copying rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,705 copying rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,707 copying rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,709 copying rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,711 copying rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,713 copying rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,715 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,717 copying rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,719 copying rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,720 copying rna_tools/tools/rna_rosetta/test.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,722 copying rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:34,725 creating build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,726 copying rna_tools/tools/mq/rna_mq_exp.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,728 copying rna_tools/tools/mq/__init__.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,729 copying rna_tools/tools/mq/rna_mq_wx_collect.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,731 copying rna_tools/tools/mq/rna_mq_collect.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,734 copying rna_tools/tools/mq/rna_mq_score.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,736 copying rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,739 copying rna_tools/tools/mq/rna_mq_plot.py -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:34,741 creating build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:34,743 copying rna_tools/tools/clarna_play/__init__.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:34,744 copying rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:34,748 copying rna_tools/tools/clarna_play/PDBSeq.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:34,751 copying rna_tools/tools/clarna_play/rna_clarna_run.py -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:34,755 creating build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:09:34,756 copying rna_tools/tools/rna_refinement/rna_refinement.py -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:09:34,759 copying rna_tools/tools/rna_refinement/__init__.py -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:09:34,761 creating build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:34,762 copying rna_tools/tools/mini_moderna3/__init__.py -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:34,764 creating build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:34,766 copying rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:34,767 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:34,770 copying rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/lib/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:34,772 creating build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:34,773 copying rna_tools/tools/rna_helix_vis/__init__.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:34,775 copying rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:34,779 creating build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,780 copying rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,783 copying rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,785 copying rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,787 copying rna_tools/tools/rna_alignment/__init__.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,789 copying rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,791 copying rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,793 copying rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,795 copying rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,798 copying rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,800 copying rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,803 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,804 copying rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,807 copying rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,809 copying rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,811 copying rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,814 copying rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,816 copying rna_tools/tools/rna_alignment/rna_alignment.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,819 copying rna_tools/tools/rna_alignment/test.py -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:34,822 creating build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,823 copying rna_tools/tools/plotting/__init__.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,825 copying rna_tools/tools/plotting/rna_plot_density.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,827 copying rna_tools/tools/plotting/rna_plot_heatmap.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,829 copying rna_tools/tools/plotting/rna_plot_dendogram.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,831 copying rna_tools/tools/plotting/rna_plot_hist.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,833 copying rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:34,836 creating build/lib/rna_tools/tools/extra_functions 2026-03-13T22:09:34,837 copying rna_tools/tools/extra_functions/__init__.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:09:34,839 copying rna_tools/tools/extra_functions/select_fragment.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:09:34,841 copying rna_tools/tools/extra_functions/gen_numbering.py -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:09:34,844 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:34,845 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:34,847 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:34,850 creating build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:09:34,851 copying rna_tools/tools/ClashCalc/__init__.py -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:09:34,853 copying rna_tools/tools/ClashCalc/ClashCalc.py -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:09:34,856 creating build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,857 copying rna_tools/tools/simrna_trajectory/__init__.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,859 copying rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,862 copying rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,864 copying rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,866 copying rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,869 copying rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,871 copying rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,873 copying rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,875 copying rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:34,878 creating build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:34,879 copying rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:34,881 copying rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:34,884 creating build/lib/rna_tools/tools/md 2026-03-13T22:09:34,886 copying rna_tools/tools/md/rna_gromacs_ready.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,888 copying rna_tools/tools/md/rna_minimize.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,890 copying rna_tools/tools/md/__init__.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,892 copying rna_tools/tools/md/rna_traj_range.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,894 copying rna_tools/tools/md/rna_md.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,897 copying rna_tools/tools/md/rna_traj_n.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,899 copying rna_tools/tools/md/rna_traj_nohetm.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,901 copying rna_tools/tools/md/rna_get_energy.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,903 copying rna_tools/tools/md/test.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,905 copying rna_tools/tools/md/rnakb_utils.py -> build/lib/rna_tools/tools/md 2026-03-13T22:09:34,908 creating build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:09:34,909 copying rna_tools/tools/pymol_drawing/__init__.py -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:09:34,911 copying rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:09:34,914 creating build/lib/rna_tools/tools/rna_bp 2026-03-13T22:09:34,915 copying rna_tools/tools/rna_bp/__init__.py -> build/lib/rna_tools/tools/rna_bp 2026-03-13T22:09:34,917 copying rna_tools/tools/rna_bp/base_pair.py -> build/lib/rna_tools/tools/rna_bp 2026-03-13T22:09:34,920 creating build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:09:34,921 copying rna_tools/tools/rna_x3dna/__init__.py -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:09:34,923 copying rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:09:34,926 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:34,927 copying rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:34,929 copying rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:34,932 creating build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:34,934 copying rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:34,936 copying rna_tools/tools/rna_prediction_significance/__init__.py -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:34,938 creating build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,940 copying rna_tools/tools/webserver-engine/daemon.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,942 copying rna_tools/tools/webserver-engine/__init__.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,944 copying rna_tools/tools/webserver-engine/cleanup.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,947 copying rna_tools/tools/webserver-engine/checker.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,949 copying rna_tools/tools/webserver-engine/manage.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,951 copying rna_tools/tools/webserver-engine/sendmail.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,953 copying rna_tools/tools/webserver-engine/wsgi.py -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:34,956 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:34,957 copying rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:34,959 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:34,962 copying rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:34,964 creating build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:34,965 copying rna_tools/tools/cluster_load/__init__.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:34,967 copying rna_tools/tools/cluster_load/cluster_load.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:34,970 copying rna_tools/tools/cluster_load/cluster_mini_free.py -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:34,972 creating build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,974 copying rna_tools/tools/misc/rna_test_cuda.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,976 copying rna_tools/tools/misc/rna_dict2fasta.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,978 copying rna_tools/tools/misc/__init__.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,980 copying rna_tools/tools/misc/rna_remote_run.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,982 copying rna_tools/tools/misc/rna_tools_which.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,984 copying rna_tools/tools/misc/rna_ok_mail.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,986 copying rna_tools/tools/misc/rna_topdb.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,988 copying rna_tools/tools/misc/reverse.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,990 copying rna_tools/tools/misc/rna_tools_demo.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,992 copying rna_tools/tools/misc/translate.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,994 copying rna_tools/tools/misc/rna_add_chain.py -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:34,997 creating build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:34,999 copying rna_tools/tools/rna_filter/__init__.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,001 copying rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,003 copying rna_tools/tools/rna_filter/rna_ec2x.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,005 copying rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,007 copying rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,009 copying rna_tools/tools/rna_filter/rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,012 copying rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,014 copying rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,016 copying rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,018 copying rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,021 copying rna_tools/tools/rna_filter/rna_get_distances.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,024 copying rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,026 copying rna_tools/tools/rna_filter/test_rna_filter.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,028 copying rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,030 copying rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,033 copying rna_tools/tools/rna_filter/rna_get_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,036 copying rna_tools/tools/rna_filter/pymol_dists.py -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:35,038 creating build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:35,040 copying rna_tools/tools/rna_calc_inf/__init__.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:35,042 copying rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:35,044 copying rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:35,047 creating build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:35,049 copying rna_tools/tools/diffpdb/__init__.py -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:35,051 copying rna_tools/tools/diffpdb/diffpdb.py -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:35,054 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:35,055 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:35,057 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:35,060 creating build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:35,061 copying rna_tools/tools/clarna_app/__init__.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:35,063 copying rna_tools/tools/clarna_app/rna_clarna_app.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:35,065 copying rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:35,067 copying rna_tools/tools/clarna_app/test.py -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:35,070 creating build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:35,071 copying rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:35,073 copying rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:35,075 creating build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,077 copying rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,079 copying rna_tools/tools/pdb_formatix/__init__.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,081 copying rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,083 copying rna_tools/tools/pdb_formatix/rebuilder.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,085 copying rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,087 copying rna_tools/tools/pdb_formatix/PDBFile.py -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:35,090 creating build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,091 copying rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,096 copying rna_tools/tools/PyMOL4RNA/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,098 copying rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,101 copying rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,103 copying rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,105 copying rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,108 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,111 copying rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,114 copying rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:35,117 creating build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:35,118 copying rna_tools/tools/clanstix/__init__.py -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:35,120 copying rna_tools/tools/clanstix/rna_clanstix.py -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:35,124 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:09:35,125 copying rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:09:35,127 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:35,129 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:35,131 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:35,134 creating build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:09:35,135 copying rna_tools/tools/mq/FARNA/__init__.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:09:35,137 copying rna_tools/tools/mq/FARNA/FARNA.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:09:35,139 copying rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:09:35,142 creating build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:35,144 copying rna_tools/tools/mq/eSCORE/__init__.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:35,146 copying rna_tools/tools/mq/eSCORE/eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:35,148 copying rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:35,150 creating build/lib/rna_tools/tools/mq/lib 2026-03-13T22:09:35,152 copying rna_tools/tools/mq/lib/__init__.py -> build/lib/rna_tools/tools/mq/lib 2026-03-13T22:09:35,154 creating build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:35,155 copying rna_tools/tools/mq/RNAscore/__init__.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:35,158 copying rna_tools/tools/mq/RNAscore/RNAscore.py -> build/lib/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:35,160 creating build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:35,161 copying rna_tools/tools/mq/rsRNASP/__init__.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:35,164 copying rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:35,166 copying rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:35,168 creating build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:35,170 copying rna_tools/tools/mq/ClashScore/__init__.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:35,172 copying rna_tools/tools/mq/ClashScore/ClashScore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:35,174 copying rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:35,177 creating build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,178 copying rna_tools/tools/mq/RASP/__init__.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,180 copying rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,182 copying rna_tools/tools/mq/RASP/RASP.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,185 copying rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,187 copying rna_tools/tools/mq/RASP/test.py -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:35,190 creating build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:35,191 copying rna_tools/tools/mq/QRNAS/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:35,193 copying rna_tools/tools/mq/QRNAS/QRNAS.py -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:35,196 creating build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:35,198 copying rna_tools/tools/mq/Dfire/__init__.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:35,200 copying rna_tools/tools/mq/Dfire/Dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:35,202 copying rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:35,205 creating build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:35,206 copying rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:35,208 copying rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:35,211 copying rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:35,215 creating build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:35,216 copying rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:35,219 copying rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:35,222 copying rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:35,225 creating build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:35,227 copying rna_tools/tools/mq/RNAkb/__init__.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:35,229 copying rna_tools/tools/mq/RNAkb/RNAkb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:35,232 copying rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:35,236 creating build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:35,237 copying rna_tools/tools/mq/FARFAR2/__init__.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:35,240 copying rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:35,243 copying rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:35,247 creating build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:35,248 copying rna_tools/tools/mq/SimRNA/__init__.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:35,251 copying rna_tools/tools/mq/SimRNA/SimRNA.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:35,254 copying rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:35,257 creating build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:35,259 copying rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:35,261 copying rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:35,265 creating build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:35,266 copying rna_tools/tools/mq/lib/timex/__init__.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:35,269 copying rna_tools/tools/mq/lib/timex/timex.py -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:35,272 creating build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:35,273 copying rna_tools/tools/mq/lib/wrappers/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:35,276 copying rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:35,279 copying rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:35,282 creating build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:35,283 copying rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:35,286 copying rna_tools/tools/mq/lib/wrappers/test/test.py -> build/lib/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:35,289 creating build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:35,291 copying rna_tools/tools/mq/RASP/test/__init__.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:35,293 copying rna_tools/tools/mq/RASP/test/test.py -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:35,297 creating build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:35,298 copying rna_tools/tools/mq/QRNAS/test/__init__.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:35,301 copying rna_tools/tools/mq/QRNAS/test/test.py -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:35,305 creating build/lib/rna_tools/tools/clarna_play/lib 2026-03-13T22:09:35,306 copying rna_tools/tools/clarna_play/lib/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib 2026-03-13T22:09:35,310 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,311 copying rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,313 copying rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,315 copying rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,319 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,321 copying rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,324 copying rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,326 copying rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,330 copying rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:35,332 creating build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:35,334 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:35,336 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:35,338 copying rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:35,342 creating build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,344 copying rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,346 copying rna_tools/tools/mini_moderna3/moderna/Template.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,348 copying rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,351 copying rna_tools/tools/mini_moderna3/moderna/_version.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,353 copying rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,355 copying rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,358 copying rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,361 copying rna_tools/tools/mini_moderna3/moderna/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,364 copying rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,366 copying rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,369 copying rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,371 copying rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,374 copying rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,377 copying rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,379 copying rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,382 copying rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,386 copying rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,388 copying rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,391 copying rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:35,395 creating build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,396 copying rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,398 copying rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,400 copying rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,403 copying rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,405 copying rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:35,408 creating build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:35,409 copying rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:35,411 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:35,413 copying rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:35,416 copying rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:35,419 creating build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,420 copying rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,423 copying rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,425 copying rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,427 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,429 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,432 copying rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:35,435 creating build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,436 copying rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,438 copying rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,440 copying rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,443 copying rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,445 copying rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,448 copying rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,450 copying rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:35,454 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,455 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,458 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,460 copying rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,462 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,464 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,466 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,468 copying rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,471 copying rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,473 copying rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,476 copying rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,478 copying rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,480 copying rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,483 copying rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,485 copying rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,487 copying rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,489 copying rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,491 copying rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:35,494 creating build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,495 copying rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,497 copying rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,499 copying rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,501 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,504 copying rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,506 copying rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:35,509 creating build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,510 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,512 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,514 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,517 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,519 copying rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:35,521 creating build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:35,522 copying rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:35,524 copying rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:35,527 creating build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,528 copying rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,530 copying rna_tools/tools/rna_alignment/utils/__init__.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,532 copying rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,534 copying rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,536 copying rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,538 copying rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,540 copying rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,542 copying rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,544 copying rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:35,547 creating build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:35,548 copying rna_tools/tools/webserver-engine/web/__init__.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:35,549 copying rna_tools/tools/webserver-engine/web/urls.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:35,551 copying rna_tools/tools/webserver-engine/web/settings.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:35,553 copying rna_tools/tools/webserver-engine/web/wsgi.py -> build/lib/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:35,556 creating build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:35,557 copying rna_tools/tools/webserver-engine/app/__init__.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:35,559 copying rna_tools/tools/webserver-engine/app/views.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:35,562 copying rna_tools/tools/webserver-engine/app/models.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:35,564 copying rna_tools/tools/webserver-engine/app/admin.py -> build/lib/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:35,566 creating build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:09:35,567 copying rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/lib/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:09:35,570 creating build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:35,571 copying rna_tools/tools/pdb_formatix/test/__init__.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:35,572 copying rna_tools/tools/pdb_formatix/test/test.py -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:35,575 creating build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,576 copying rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,578 copying rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,581 copying rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,583 copying rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,585 copying rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,587 copying rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,589 copying rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/lib/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:35,592 running egg_info 2026-03-13T22:09:35,599 writing rna_tools.egg-info/PKG-INFO 2026-03-13T22:09:35,602 writing dependency_links to rna_tools.egg-info/dependency_links.txt 2026-03-13T22:09:35,604 writing requirements to rna_tools.egg-info/requires.txt 2026-03-13T22:09:35,605 writing top-level names to rna_tools.egg-info/top_level.txt 2026-03-13T22:09:35,684 reading manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:35,721 reading manifest template 'MANIFEST.in' 2026-03-13T22:09:36,445 adding license file 'LICENSE' 2026-03-13T22:09:36,531 writing manifest file 'rna_tools.egg-info/SOURCES.txt' 2026-03-13T22:09:36,559 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.data' is absent from the `packages` configuration. 2026-03-13T22:09:36,560 !! 2026-03-13T22:09:36,561 ******************************************************************************** 2026-03-13T22:09:36,561 ############################ 2026-03-13T22:09:36,562 # Package would be ignored # 2026-03-13T22:09:36,562 ############################ 2026-03-13T22:09:36,563 Python recognizes 'rna_tools.data' as an importable package[^1], 2026-03-13T22:09:36,564 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,565 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,565 package, please make sure that 'rna_tools.data' is explicitly added 2026-03-13T22:09:36,566 to the `packages` configuration field. 2026-03-13T22:09:36,567 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,568 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,568 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,569 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,570 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,571 If you don't want 'rna_tools.data' to be distributed and are 2026-03-13T22:09:36,572 already explicitly excluding 'rna_tools.data' via 2026-03-13T22:09:36,572 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,572 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,573 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,574 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,575 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,576 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,577 even if it does not contain any `.py` files. 2026-03-13T22:09:36,578 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,578 directory, all directories are treated like packages. 2026-03-13T22:09:36,579 ******************************************************************************** 2026-03-13T22:09:36,580 !! 2026-03-13T22:09:36,580 check.warn(importable) 2026-03-13T22:09:36,581 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests' is absent from the `packages` configuration. 2026-03-13T22:09:36,581 !! 2026-03-13T22:09:36,582 ******************************************************************************** 2026-03-13T22:09:36,582 ############################ 2026-03-13T22:09:36,582 # Package would be ignored # 2026-03-13T22:09:36,583 ############################ 2026-03-13T22:09:36,583 Python recognizes 'rna_tools.tests' as an importable package[^1], 2026-03-13T22:09:36,584 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,584 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,585 package, please make sure that 'rna_tools.tests' is explicitly added 2026-03-13T22:09:36,585 to the `packages` configuration field. 2026-03-13T22:09:36,586 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,586 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,587 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,588 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,588 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,589 If you don't want 'rna_tools.tests' to be distributed and are 2026-03-13T22:09:36,590 already explicitly excluding 'rna_tools.tests' via 2026-03-13T22:09:36,590 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,591 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,591 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,592 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,594 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,595 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,596 even if it does not contain any `.py` files. 2026-03-13T22:09:36,596 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,597 directory, all directories are treated like packages. 2026-03-13T22:09:36,597 ******************************************************************************** 2026-03-13T22:09:36,598 !! 2026-03-13T22:09:36,599 check.warn(importable) 2026-03-13T22:09:36,599 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module' is absent from the `packages` configuration. 2026-03-13T22:09:36,600 !! 2026-03-13T22:09:36,601 ******************************************************************************** 2026-03-13T22:09:36,601 ############################ 2026-03-13T22:09:36,602 # Package would be ignored # 2026-03-13T22:09:36,602 ############################ 2026-03-13T22:09:36,603 Python recognizes 'rna_tools.tests.test_import_module' as an importable package[^1], 2026-03-13T22:09:36,603 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,605 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,605 package, please make sure that 'rna_tools.tests.test_import_module' is explicitly added 2026-03-13T22:09:36,606 to the `packages` configuration field. 2026-03-13T22:09:36,607 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,607 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,608 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,608 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,609 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,610 If you don't want 'rna_tools.tests.test_import_module' to be distributed and are 2026-03-13T22:09:36,610 already explicitly excluding 'rna_tools.tests.test_import_module' via 2026-03-13T22:09:36,610 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,611 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,611 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,612 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,613 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,614 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,614 even if it does not contain any `.py` files. 2026-03-13T22:09:36,615 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,615 directory, all directories are treated like packages. 2026-03-13T22:09:36,615 ******************************************************************************** 2026-03-13T22:09:36,616 !! 2026-03-13T22:09:36,617 check.warn(importable) 2026-03-13T22:09:36,617 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tests.test_import_module.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,618 !! 2026-03-13T22:09:36,619 ******************************************************************************** 2026-03-13T22:09:36,619 ############################ 2026-03-13T22:09:36,620 # Package would be ignored # 2026-03-13T22:09:36,620 ############################ 2026-03-13T22:09:36,621 Python recognizes 'rna_tools.tests.test_import_module.test_data' as an importable package[^1], 2026-03-13T22:09:36,621 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,623 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,623 package, please make sure that 'rna_tools.tests.test_import_module.test_data' is explicitly added 2026-03-13T22:09:36,624 to the `packages` configuration field. 2026-03-13T22:09:36,625 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,625 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,625 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,626 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,627 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,628 If you don't want 'rna_tools.tests.test_import_module.test_data' to be distributed and are 2026-03-13T22:09:36,629 already explicitly excluding 'rna_tools.tests.test_import_module.test_data' via 2026-03-13T22:09:36,629 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,630 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,630 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,631 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,632 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,633 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,634 even if it does not contain any `.py` files. 2026-03-13T22:09:36,634 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,635 directory, all directories are treated like packages. 2026-03-13T22:09:36,635 ******************************************************************************** 2026-03-13T22:09:36,636 !! 2026-03-13T22:09:36,636 check.warn(importable) 2026-03-13T22:09:36,637 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.ClashCalc.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,637 !! 2026-03-13T22:09:36,638 ******************************************************************************** 2026-03-13T22:09:36,639 ############################ 2026-03-13T22:09:36,639 # Package would be ignored # 2026-03-13T22:09:36,640 ############################ 2026-03-13T22:09:36,640 Python recognizes 'rna_tools.tools.ClashCalc.test_data' as an importable package[^1], 2026-03-13T22:09:36,640 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,641 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,642 package, please make sure that 'rna_tools.tools.ClashCalc.test_data' is explicitly added 2026-03-13T22:09:36,642 to the `packages` configuration field. 2026-03-13T22:09:36,643 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,644 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,644 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,645 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,646 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,647 If you don't want 'rna_tools.tools.ClashCalc.test_data' to be distributed and are 2026-03-13T22:09:36,648 already explicitly excluding 'rna_tools.tools.ClashCalc.test_data' via 2026-03-13T22:09:36,648 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,649 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,649 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,650 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,651 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,653 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,653 even if it does not contain any `.py` files. 2026-03-13T22:09:36,654 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,654 directory, all directories are treated like packages. 2026-03-13T22:09:36,655 ******************************************************************************** 2026-03-13T22:09:36,656 !! 2026-03-13T22:09:36,656 check.warn(importable) 2026-03-13T22:09:36,657 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.doc' is absent from the `packages` configuration. 2026-03-13T22:09:36,657 !! 2026-03-13T22:09:36,659 ******************************************************************************** 2026-03-13T22:09:36,659 ############################ 2026-03-13T22:09:36,660 # Package would be ignored # 2026-03-13T22:09:36,660 ############################ 2026-03-13T22:09:36,660 Python recognizes 'rna_tools.tools.PyMOL4RNA.doc' as an importable package[^1], 2026-03-13T22:09:36,661 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,661 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,662 package, please make sure that 'rna_tools.tools.PyMOL4RNA.doc' is explicitly added 2026-03-13T22:09:36,662 to the `packages` configuration field. 2026-03-13T22:09:36,663 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,663 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,664 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,664 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,665 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,666 If you don't want 'rna_tools.tools.PyMOL4RNA.doc' to be distributed and are 2026-03-13T22:09:36,666 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.doc' via 2026-03-13T22:09:36,667 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,667 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,667 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,668 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,670 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,671 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,671 even if it does not contain any `.py` files. 2026-03-13T22:09:36,672 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,673 directory, all directories are treated like packages. 2026-03-13T22:09:36,673 ******************************************************************************** 2026-03-13T22:09:36,674 !! 2026-03-13T22:09:36,675 check.warn(importable) 2026-03-13T22:09:36,675 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.PyMOL4RNA.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,676 !! 2026-03-13T22:09:36,677 ******************************************************************************** 2026-03-13T22:09:36,678 ############################ 2026-03-13T22:09:36,678 # Package would be ignored # 2026-03-13T22:09:36,678 ############################ 2026-03-13T22:09:36,679 Python recognizes 'rna_tools.tools.PyMOL4RNA.test_data' as an importable package[^1], 2026-03-13T22:09:36,679 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,680 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,681 package, please make sure that 'rna_tools.tools.PyMOL4RNA.test_data' is explicitly added 2026-03-13T22:09:36,681 to the `packages` configuration field. 2026-03-13T22:09:36,682 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,683 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,684 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,685 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,686 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,687 If you don't want 'rna_tools.tools.PyMOL4RNA.test_data' to be distributed and are 2026-03-13T22:09:36,687 already explicitly excluding 'rna_tools.tools.PyMOL4RNA.test_data' via 2026-03-13T22:09:36,688 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,688 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,688 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,689 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,690 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,691 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,691 even if it does not contain any `.py` files. 2026-03-13T22:09:36,692 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,692 directory, all directories are treated like packages. 2026-03-13T22:09:36,693 ******************************************************************************** 2026-03-13T22:09:36,693 !! 2026-03-13T22:09:36,694 check.warn(importable) 2026-03-13T22:09:36,694 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.doc' is absent from the `packages` configuration. 2026-03-13T22:09:36,695 !! 2026-03-13T22:09:36,696 ******************************************************************************** 2026-03-13T22:09:36,696 ############################ 2026-03-13T22:09:36,697 # Package would be ignored # 2026-03-13T22:09:36,697 ############################ 2026-03-13T22:09:36,698 Python recognizes 'rna_tools.tools.clanstix.doc' as an importable package[^1], 2026-03-13T22:09:36,698 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,699 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,700 package, please make sure that 'rna_tools.tools.clanstix.doc' is explicitly added 2026-03-13T22:09:36,701 to the `packages` configuration field. 2026-03-13T22:09:36,702 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,702 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,703 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,704 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,705 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,706 If you don't want 'rna_tools.tools.clanstix.doc' to be distributed and are 2026-03-13T22:09:36,706 already explicitly excluding 'rna_tools.tools.clanstix.doc' via 2026-03-13T22:09:36,707 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,707 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,708 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,709 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,710 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,712 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,713 even if it does not contain any `.py` files. 2026-03-13T22:09:36,713 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,714 directory, all directories are treated like packages. 2026-03-13T22:09:36,715 ******************************************************************************** 2026-03-13T22:09:36,715 !! 2026-03-13T22:09:36,716 check.warn(importable) 2026-03-13T22:09:36,716 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,716 !! 2026-03-13T22:09:36,717 ******************************************************************************** 2026-03-13T22:09:36,717 ############################ 2026-03-13T22:09:36,718 # Package would be ignored # 2026-03-13T22:09:36,718 ############################ 2026-03-13T22:09:36,719 Python recognizes 'rna_tools.tools.clanstix.test_data' as an importable package[^1], 2026-03-13T22:09:36,719 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,720 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,720 package, please make sure that 'rna_tools.tools.clanstix.test_data' is explicitly added 2026-03-13T22:09:36,721 to the `packages` configuration field. 2026-03-13T22:09:36,721 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,722 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,722 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,723 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,724 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,725 If you don't want 'rna_tools.tools.clanstix.test_data' to be distributed and are 2026-03-13T22:09:36,726 already explicitly excluding 'rna_tools.tools.clanstix.test_data' via 2026-03-13T22:09:36,727 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,727 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,728 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,729 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,730 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,731 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,732 even if it does not contain any `.py` files. 2026-03-13T22:09:36,733 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,733 directory, all directories are treated like packages. 2026-03-13T22:09:36,734 ******************************************************************************** 2026-03-13T22:09:36,735 !! 2026-03-13T22:09:36,735 check.warn(importable) 2026-03-13T22:09:36,736 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clanstix.test_data.rp17_del' is absent from the `packages` configuration. 2026-03-13T22:09:36,736 !! 2026-03-13T22:09:36,737 ******************************************************************************** 2026-03-13T22:09:36,737 ############################ 2026-03-13T22:09:36,738 # Package would be ignored # 2026-03-13T22:09:36,739 ############################ 2026-03-13T22:09:36,739 Python recognizes 'rna_tools.tools.clanstix.test_data.rp17_del' as an importable package[^1], 2026-03-13T22:09:36,740 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,741 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,741 package, please make sure that 'rna_tools.tools.clanstix.test_data.rp17_del' is explicitly added 2026-03-13T22:09:36,742 to the `packages` configuration field. 2026-03-13T22:09:36,743 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,743 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,744 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,744 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,745 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,746 If you don't want 'rna_tools.tools.clanstix.test_data.rp17_del' to be distributed and are 2026-03-13T22:09:36,746 already explicitly excluding 'rna_tools.tools.clanstix.test_data.rp17_del' via 2026-03-13T22:09:36,747 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,747 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,747 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,748 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,749 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,750 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,751 even if it does not contain any `.py` files. 2026-03-13T22:09:36,751 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,752 directory, all directories are treated like packages. 2026-03-13T22:09:36,752 ******************************************************************************** 2026-03-13T22:09:36,753 !! 2026-03-13T22:09:36,753 check.warn(importable) 2026-03-13T22:09:36,754 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_app.data' is absent from the `packages` configuration. 2026-03-13T22:09:36,754 !! 2026-03-13T22:09:36,755 ******************************************************************************** 2026-03-13T22:09:36,756 ############################ 2026-03-13T22:09:36,756 # Package would be ignored # 2026-03-13T22:09:36,757 ############################ 2026-03-13T22:09:36,758 Python recognizes 'rna_tools.tools.clarna_app.data' as an importable package[^1], 2026-03-13T22:09:36,758 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,759 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,760 package, please make sure that 'rna_tools.tools.clarna_app.data' is explicitly added 2026-03-13T22:09:36,760 to the `packages` configuration field. 2026-03-13T22:09:36,761 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,762 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,762 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,763 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,764 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,765 If you don't want 'rna_tools.tools.clarna_app.data' to be distributed and are 2026-03-13T22:09:36,766 already explicitly excluding 'rna_tools.tools.clarna_app.data' via 2026-03-13T22:09:36,766 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,767 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,768 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,769 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,770 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,771 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,771 even if it does not contain any `.py` files. 2026-03-13T22:09:36,772 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,772 directory, all directories are treated like packages. 2026-03-13T22:09:36,772 ******************************************************************************** 2026-03-13T22:09:36,773 !! 2026-03-13T22:09:36,774 check.warn(importable) 2026-03-13T22:09:36,774 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is absent from the `packages` configuration. 2026-03-13T22:09:36,774 !! 2026-03-13T22:09:36,775 ******************************************************************************** 2026-03-13T22:09:36,776 ############################ 2026-03-13T22:09:36,776 # Package would be ignored # 2026-03-13T22:09:36,777 ############################ 2026-03-13T22:09:36,777 Python recognizes 'rna_tools.tools.clarna_play.ClaRNAlib.lib' as an importable package[^1], 2026-03-13T22:09:36,777 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,778 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,779 package, please make sure that 'rna_tools.tools.clarna_play.ClaRNAlib.lib' is explicitly added 2026-03-13T22:09:36,779 to the `packages` configuration field. 2026-03-13T22:09:36,780 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,781 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,781 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,782 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,784 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,784 If you don't want 'rna_tools.tools.clarna_play.ClaRNAlib.lib' to be distributed and are 2026-03-13T22:09:36,785 already explicitly excluding 'rna_tools.tools.clarna_play.ClaRNAlib.lib' via 2026-03-13T22:09:36,785 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,786 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,787 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,788 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,789 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,790 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,791 even if it does not contain any `.py` files. 2026-03-13T22:09:36,791 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,792 directory, all directories are treated like packages. 2026-03-13T22:09:36,792 ******************************************************************************** 2026-03-13T22:09:36,794 !! 2026-03-13T22:09:36,794 check.warn(importable) 2026-03-13T22:09:36,795 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.docs' is absent from the `packages` configuration. 2026-03-13T22:09:36,796 !! 2026-03-13T22:09:36,797 ******************************************************************************** 2026-03-13T22:09:36,797 ############################ 2026-03-13T22:09:36,798 # Package would be ignored # 2026-03-13T22:09:36,798 ############################ 2026-03-13T22:09:36,799 Python recognizes 'rna_tools.tools.clarna_play.docs' as an importable package[^1], 2026-03-13T22:09:36,799 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,800 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,800 package, please make sure that 'rna_tools.tools.clarna_play.docs' is explicitly added 2026-03-13T22:09:36,801 to the `packages` configuration field. 2026-03-13T22:09:36,801 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,802 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,802 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,803 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,804 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,805 If you don't want 'rna_tools.tools.clarna_play.docs' to be distributed and are 2026-03-13T22:09:36,805 already explicitly excluding 'rna_tools.tools.clarna_play.docs' via 2026-03-13T22:09:36,805 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,806 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,806 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,807 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,808 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,810 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,810 even if it does not contain any `.py` files. 2026-03-13T22:09:36,811 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,811 directory, all directories are treated like packages. 2026-03-13T22:09:36,812 ******************************************************************************** 2026-03-13T22:09:36,812 !! 2026-03-13T22:09:36,813 check.warn(importable) 2026-03-13T22:09:36,814 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is absent from the `packages` configuration. 2026-03-13T22:09:36,814 !! 2026-03-13T22:09:36,815 ******************************************************************************** 2026-03-13T22:09:36,816 ############################ 2026-03-13T22:09:36,816 # Package would be ignored # 2026-03-13T22:09:36,817 ############################ 2026-03-13T22:09:36,817 Python recognizes 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' as an importable package[^1], 2026-03-13T22:09:36,818 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,818 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,819 package, please make sure that 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' is explicitly added 2026-03-13T22:09:36,820 to the `packages` configuration field. 2026-03-13T22:09:36,821 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,821 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,822 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,823 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,824 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,824 If you don't want 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' to be distributed and are 2026-03-13T22:09:36,825 already explicitly excluding 'rna_tools.tools.clarna_play.lib.ClaRNAwd_to_vienaSS' via 2026-03-13T22:09:36,825 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,825 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,826 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,827 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,827 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,829 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,829 even if it does not contain any `.py` files. 2026-03-13T22:09:36,830 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,830 directory, all directories are treated like packages. 2026-03-13T22:09:36,830 ******************************************************************************** 2026-03-13T22:09:36,831 !! 2026-03-13T22:09:36,832 check.warn(importable) 2026-03-13T22:09:36,832 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,833 !! 2026-03-13T22:09:36,833 ******************************************************************************** 2026-03-13T22:09:36,834 ############################ 2026-03-13T22:09:36,834 # Package would be ignored # 2026-03-13T22:09:36,835 ############################ 2026-03-13T22:09:36,835 Python recognizes 'rna_tools.tools.clarna_play.test_data' as an importable package[^1], 2026-03-13T22:09:36,836 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,837 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,837 package, please make sure that 'rna_tools.tools.clarna_play.test_data' is explicitly added 2026-03-13T22:09:36,838 to the `packages` configuration field. 2026-03-13T22:09:36,839 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,839 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,840 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,841 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,841 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,842 If you don't want 'rna_tools.tools.clarna_play.test_data' to be distributed and are 2026-03-13T22:09:36,843 already explicitly excluding 'rna_tools.tools.clarna_play.test_data' via 2026-03-13T22:09:36,843 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,844 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,844 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,845 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,846 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,848 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,848 even if it does not contain any `.py` files. 2026-03-13T22:09:36,849 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,850 directory, all directories are treated like packages. 2026-03-13T22:09:36,850 ******************************************************************************** 2026-03-13T22:09:36,851 !! 2026-03-13T22:09:36,851 check.warn(importable) 2026-03-13T22:09:36,851 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:36,852 !! 2026-03-13T22:09:36,853 ******************************************************************************** 2026-03-13T22:09:36,853 ############################ 2026-03-13T22:09:36,853 # Package would be ignored # 2026-03-13T22:09:36,854 ############################ 2026-03-13T22:09:36,854 Python recognizes 'rna_tools.tools.clarna_play.test_output' as an importable package[^1], 2026-03-13T22:09:36,855 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,856 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,856 package, please make sure that 'rna_tools.tools.clarna_play.test_output' is explicitly added 2026-03-13T22:09:36,856 to the `packages` configuration field. 2026-03-13T22:09:36,857 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,858 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,858 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,859 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,861 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,862 If you don't want 'rna_tools.tools.clarna_play.test_output' to be distributed and are 2026-03-13T22:09:36,862 already explicitly excluding 'rna_tools.tools.clarna_play.test_output' via 2026-03-13T22:09:36,863 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,864 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,864 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,865 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,866 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,868 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,868 even if it does not contain any `.py` files. 2026-03-13T22:09:36,869 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,869 directory, all directories are treated like packages. 2026-03-13T22:09:36,870 ******************************************************************************** 2026-03-13T22:09:36,871 !! 2026-03-13T22:09:36,871 check.warn(importable) 2026-03-13T22:09:36,872 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.clarna_play.tests' is absent from the `packages` configuration. 2026-03-13T22:09:36,872 !! 2026-03-13T22:09:36,873 ******************************************************************************** 2026-03-13T22:09:36,873 ############################ 2026-03-13T22:09:36,874 # Package would be ignored # 2026-03-13T22:09:36,874 ############################ 2026-03-13T22:09:36,875 Python recognizes 'rna_tools.tools.clarna_play.tests' as an importable package[^1], 2026-03-13T22:09:36,876 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,877 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,877 package, please make sure that 'rna_tools.tools.clarna_play.tests' is explicitly added 2026-03-13T22:09:36,878 to the `packages` configuration field. 2026-03-13T22:09:36,878 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,879 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,879 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,880 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,881 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,882 If you don't want 'rna_tools.tools.clarna_play.tests' to be distributed and are 2026-03-13T22:09:36,882 already explicitly excluding 'rna_tools.tools.clarna_play.tests' via 2026-03-13T22:09:36,883 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,883 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,883 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,884 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,886 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,887 even if it does not contain any `.py` files. 2026-03-13T22:09:36,887 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,888 directory, all directories are treated like packages. 2026-03-13T22:09:36,888 ******************************************************************************** 2026-03-13T22:09:36,889 !! 2026-03-13T22:09:36,889 check.warn(importable) 2026-03-13T22:09:36,890 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df' is absent from the `packages` configuration. 2026-03-13T22:09:36,891 !! 2026-03-13T22:09:36,892 ******************************************************************************** 2026-03-13T22:09:36,892 ############################ 2026-03-13T22:09:36,893 # Package would be ignored # 2026-03-13T22:09:36,894 ############################ 2026-03-13T22:09:36,894 Python recognizes 'rna_tools.tools.df' as an importable package[^1], 2026-03-13T22:09:36,895 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,896 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,896 package, please make sure that 'rna_tools.tools.df' is explicitly added 2026-03-13T22:09:36,897 to the `packages` configuration field. 2026-03-13T22:09:36,898 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,898 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,899 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,900 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,901 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,902 If you don't want 'rna_tools.tools.df' to be distributed and are 2026-03-13T22:09:36,903 already explicitly excluding 'rna_tools.tools.df' via 2026-03-13T22:09:36,903 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,904 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,905 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,905 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,906 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,907 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,908 even if it does not contain any `.py` files. 2026-03-13T22:09:36,908 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,908 directory, all directories are treated like packages. 2026-03-13T22:09:36,909 ******************************************************************************** 2026-03-13T22:09:36,910 !! 2026-03-13T22:09:36,910 check.warn(importable) 2026-03-13T22:09:36,911 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.df.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,911 !! 2026-03-13T22:09:36,912 ******************************************************************************** 2026-03-13T22:09:36,912 ############################ 2026-03-13T22:09:36,913 # Package would be ignored # 2026-03-13T22:09:36,913 ############################ 2026-03-13T22:09:36,913 Python recognizes 'rna_tools.tools.df.test_data' as an importable package[^1], 2026-03-13T22:09:36,914 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,915 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,915 package, please make sure that 'rna_tools.tools.df.test_data' is explicitly added 2026-03-13T22:09:36,916 to the `packages` configuration field. 2026-03-13T22:09:36,917 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,918 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,919 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,919 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,921 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,922 If you don't want 'rna_tools.tools.df.test_data' to be distributed and are 2026-03-13T22:09:36,922 already explicitly excluding 'rna_tools.tools.df.test_data' via 2026-03-13T22:09:36,923 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,924 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,924 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,925 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,926 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,927 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,928 even if it does not contain any `.py` files. 2026-03-13T22:09:36,928 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,929 directory, all directories are treated like packages. 2026-03-13T22:09:36,929 ******************************************************************************** 2026-03-13T22:09:36,931 !! 2026-03-13T22:09:36,931 check.warn(importable) 2026-03-13T22:09:36,932 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.doc' is absent from the `packages` configuration. 2026-03-13T22:09:36,932 !! 2026-03-13T22:09:36,934 ******************************************************************************** 2026-03-13T22:09:36,934 ############################ 2026-03-13T22:09:36,935 # Package would be ignored # 2026-03-13T22:09:36,935 ############################ 2026-03-13T22:09:36,935 Python recognizes 'rna_tools.tools.diffpdb.doc' as an importable package[^1], 2026-03-13T22:09:36,936 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,936 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,937 package, please make sure that 'rna_tools.tools.diffpdb.doc' is explicitly added 2026-03-13T22:09:36,937 to the `packages` configuration field. 2026-03-13T22:09:36,938 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,938 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,939 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,941 If you don't want 'rna_tools.tools.diffpdb.doc' to be distributed and are 2026-03-13T22:09:36,941 already explicitly excluding 'rna_tools.tools.diffpdb.doc' via 2026-03-13T22:09:36,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,943 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,944 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,945 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,947 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,947 even if it does not contain any `.py` files. 2026-03-13T22:09:36,948 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,948 directory, all directories are treated like packages. 2026-03-13T22:09:36,949 ******************************************************************************** 2026-03-13T22:09:36,950 !! 2026-03-13T22:09:36,950 check.warn(importable) 2026-03-13T22:09:36,951 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.lib' is absent from the `packages` configuration. 2026-03-13T22:09:36,951 !! 2026-03-13T22:09:36,952 ******************************************************************************** 2026-03-13T22:09:36,953 ############################ 2026-03-13T22:09:36,953 # Package would be ignored # 2026-03-13T22:09:36,954 ############################ 2026-03-13T22:09:36,954 Python recognizes 'rna_tools.tools.diffpdb.lib' as an importable package[^1], 2026-03-13T22:09:36,955 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,956 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,956 package, please make sure that 'rna_tools.tools.diffpdb.lib' is explicitly added 2026-03-13T22:09:36,957 to the `packages` configuration field. 2026-03-13T22:09:36,958 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,959 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,959 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,960 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,962 If you don't want 'rna_tools.tools.diffpdb.lib' to be distributed and are 2026-03-13T22:09:36,962 already explicitly excluding 'rna_tools.tools.diffpdb.lib' via 2026-03-13T22:09:36,963 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,963 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,963 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,964 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,965 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,966 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,966 even if it does not contain any `.py` files. 2026-03-13T22:09:36,967 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,967 directory, all directories are treated like packages. 2026-03-13T22:09:36,968 ******************************************************************************** 2026-03-13T22:09:36,968 !! 2026-03-13T22:09:36,969 check.warn(importable) 2026-03-13T22:09:36,969 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.output' is absent from the `packages` configuration. 2026-03-13T22:09:36,970 !! 2026-03-13T22:09:36,971 ******************************************************************************** 2026-03-13T22:09:36,971 ############################ 2026-03-13T22:09:36,972 # Package would be ignored # 2026-03-13T22:09:36,972 ############################ 2026-03-13T22:09:36,973 Python recognizes 'rna_tools.tools.diffpdb.output' as an importable package[^1], 2026-03-13T22:09:36,973 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,974 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,975 package, please make sure that 'rna_tools.tools.diffpdb.output' is explicitly added 2026-03-13T22:09:36,975 to the `packages` configuration field. 2026-03-13T22:09:36,977 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,977 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,978 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,979 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,980 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:36,981 If you don't want 'rna_tools.tools.diffpdb.output' to be distributed and are 2026-03-13T22:09:36,981 already explicitly excluding 'rna_tools.tools.diffpdb.output' via 2026-03-13T22:09:36,982 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:36,982 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:36,983 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:36,984 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:36,985 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:36,987 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:36,987 even if it does not contain any `.py` files. 2026-03-13T22:09:36,988 On the other hand, currently there is no concept of package data 2026-03-13T22:09:36,989 directory, all directories are treated like packages. 2026-03-13T22:09:36,989 ******************************************************************************** 2026-03-13T22:09:36,990 !! 2026-03-13T22:09:36,990 check.warn(importable) 2026-03-13T22:09:36,991 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.diffpdb.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:36,991 !! 2026-03-13T22:09:36,992 ******************************************************************************** 2026-03-13T22:09:36,992 ############################ 2026-03-13T22:09:36,993 # Package would be ignored # 2026-03-13T22:09:36,993 ############################ 2026-03-13T22:09:36,993 Python recognizes 'rna_tools.tools.diffpdb.test_data' as an importable package[^1], 2026-03-13T22:09:36,994 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:36,995 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:36,995 package, please make sure that 'rna_tools.tools.diffpdb.test_data' is explicitly added 2026-03-13T22:09:36,995 to the `packages` configuration field. 2026-03-13T22:09:36,996 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:36,997 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:36,997 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:36,998 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:36,999 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,000 If you don't want 'rna_tools.tools.diffpdb.test_data' to be distributed and are 2026-03-13T22:09:37,001 already explicitly excluding 'rna_tools.tools.diffpdb.test_data' via 2026-03-13T22:09:37,001 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,002 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,003 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,004 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,005 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,007 even if it does not contain any `.py` files. 2026-03-13T22:09:37,008 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,008 directory, all directories are treated like packages. 2026-03-13T22:09:37,009 ******************************************************************************** 2026-03-13T22:09:37,010 !! 2026-03-13T22:09:37,011 check.warn(importable) 2026-03-13T22:09:37,011 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.data' is absent from the `packages` configuration. 2026-03-13T22:09:37,012 !! 2026-03-13T22:09:37,013 ******************************************************************************** 2026-03-13T22:09:37,013 ############################ 2026-03-13T22:09:37,014 # Package would be ignored # 2026-03-13T22:09:37,015 ############################ 2026-03-13T22:09:37,015 Python recognizes 'rna_tools.tools.md.data' as an importable package[^1], 2026-03-13T22:09:37,016 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,017 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,017 package, please make sure that 'rna_tools.tools.md.data' is explicitly added 2026-03-13T22:09:37,018 to the `packages` configuration field. 2026-03-13T22:09:37,018 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,019 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,019 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,020 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,021 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,021 If you don't want 'rna_tools.tools.md.data' to be distributed and are 2026-03-13T22:09:37,022 already explicitly excluding 'rna_tools.tools.md.data' via 2026-03-13T22:09:37,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,023 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,024 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,025 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,026 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,026 even if it does not contain any `.py` files. 2026-03-13T22:09:37,027 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,027 directory, all directories are treated like packages. 2026-03-13T22:09:37,028 ******************************************************************************** 2026-03-13T22:09:37,029 !! 2026-03-13T22:09:37,029 check.warn(importable) 2026-03-13T22:09:37,030 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,030 !! 2026-03-13T22:09:37,031 ******************************************************************************** 2026-03-13T22:09:37,032 ############################ 2026-03-13T22:09:37,032 # Package would be ignored # 2026-03-13T22:09:37,033 ############################ 2026-03-13T22:09:37,033 Python recognizes 'rna_tools.tools.md.test_data' as an importable package[^1], 2026-03-13T22:09:37,034 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,035 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,035 package, please make sure that 'rna_tools.tools.md.test_data' is explicitly added 2026-03-13T22:09:37,036 to the `packages` configuration field. 2026-03-13T22:09:37,036 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,037 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,037 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,038 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,039 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,040 If you don't want 'rna_tools.tools.md.test_data' to be distributed and are 2026-03-13T22:09:37,041 already explicitly excluding 'rna_tools.tools.md.test_data' via 2026-03-13T22:09:37,041 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,042 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,043 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,044 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,045 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,046 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,046 even if it does not contain any `.py` files. 2026-03-13T22:09:37,046 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,047 directory, all directories are treated like packages. 2026-03-13T22:09:37,047 ******************************************************************************** 2026-03-13T22:09:37,048 !! 2026-03-13T22:09:37,048 check.warn(importable) 2026-03-13T22:09:37,049 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.md.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:37,049 !! 2026-03-13T22:09:37,050 ******************************************************************************** 2026-03-13T22:09:37,050 ############################ 2026-03-13T22:09:37,051 # Package would be ignored # 2026-03-13T22:09:37,051 ############################ 2026-03-13T22:09:37,052 Python recognizes 'rna_tools.tools.md.test_output' as an importable package[^1], 2026-03-13T22:09:37,052 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,053 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,054 package, please make sure that 'rna_tools.tools.md.test_output' is explicitly added 2026-03-13T22:09:37,054 to the `packages` configuration field. 2026-03-13T22:09:37,055 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,056 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,057 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,060 If you don't want 'rna_tools.tools.md.test_output' to be distributed and are 2026-03-13T22:09:37,060 already explicitly excluding 'rna_tools.tools.md.test_output' via 2026-03-13T22:09:37,061 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,061 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,062 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,063 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,065 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,066 even if it does not contain any `.py` files. 2026-03-13T22:09:37,066 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,067 directory, all directories are treated like packages. 2026-03-13T22:09:37,067 ******************************************************************************** 2026-03-13T22:09:37,068 !! 2026-03-13T22:09:37,069 check.warn(importable) 2026-03-13T22:09:37,069 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is absent from the `packages` configuration. 2026-03-13T22:09:37,070 !! 2026-03-13T22:09:37,071 ******************************************************************************** 2026-03-13T22:09:37,071 ############################ 2026-03-13T22:09:37,071 # Package would be ignored # 2026-03-13T22:09:37,072 ############################ 2026-03-13T22:09:37,072 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' as an importable package[^1], 2026-03-13T22:09:37,072 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,073 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,073 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' is explicitly added 2026-03-13T22:09:37,074 to the `packages` configuration field. 2026-03-13T22:09:37,074 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,075 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,075 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,076 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,077 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,078 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' to be distributed and are 2026-03-13T22:09:37,078 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites' via 2026-03-13T22:09:37,078 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,079 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,080 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,081 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,082 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,083 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,084 even if it does not contain any `.py` files. 2026-03-13T22:09:37,084 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,085 directory, all directories are treated like packages. 2026-03-13T22:09:37,085 ******************************************************************************** 2026-03-13T22:09:37,086 !! 2026-03-13T22:09:37,087 check.warn(importable) 2026-03-13T22:09:37,087 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,088 !! 2026-03-13T22:09:37,088 ******************************************************************************** 2026-03-13T22:09:37,089 ############################ 2026-03-13T22:09:37,089 # Package would be ignored # 2026-03-13T22:09:37,090 ############################ 2026-03-13T22:09:37,090 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' as an importable package[^1], 2026-03-13T22:09:37,091 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,092 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,092 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' is explicitly added 2026-03-13T22:09:37,093 to the `packages` configuration field. 2026-03-13T22:09:37,094 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,094 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,095 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,096 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,096 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,097 If you don't want 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' to be distributed and are 2026-03-13T22:09:37,097 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.analyze.suites.test_data' via 2026-03-13T22:09:37,098 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,098 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,098 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,099 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,100 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,101 even if it does not contain any `.py` files. 2026-03-13T22:09:37,102 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,102 directory, all directories are treated like packages. 2026-03-13T22:09:37,103 ******************************************************************************** 2026-03-13T22:09:37,104 !! 2026-03-13T22:09:37,104 check.warn(importable) 2026-03-13T22:09:37,105 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data' is absent from the `packages` configuration. 2026-03-13T22:09:37,105 !! 2026-03-13T22:09:37,106 ******************************************************************************** 2026-03-13T22:09:37,107 ############################ 2026-03-13T22:09:37,107 # Package would be ignored # 2026-03-13T22:09:37,108 ############################ 2026-03-13T22:09:37,108 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data' as an importable package[^1], 2026-03-13T22:09:37,109 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,110 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,110 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data' is explicitly added 2026-03-13T22:09:37,111 to the `packages` configuration field. 2026-03-13T22:09:37,112 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,112 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,113 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,114 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,116 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data' to be distributed and are 2026-03-13T22:09:37,116 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data' via 2026-03-13T22:09:37,116 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,117 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,118 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,119 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,120 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,121 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,121 even if it does not contain any `.py` files. 2026-03-13T22:09:37,121 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,122 directory, all directories are treated like packages. 2026-03-13T22:09:37,122 ******************************************************************************** 2026-03-13T22:09:37,123 !! 2026-03-13T22:09:37,123 check.warn(importable) 2026-03-13T22:09:37,123 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is absent from the `packages` configuration. 2026-03-13T22:09:37,124 !! 2026-03-13T22:09:37,124 ******************************************************************************** 2026-03-13T22:09:37,125 ############################ 2026-03-13T22:09:37,125 # Package would be ignored # 2026-03-13T22:09:37,125 ############################ 2026-03-13T22:09:37,126 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' as an importable package[^1], 2026-03-13T22:09:37,126 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,127 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,127 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' is explicitly added 2026-03-13T22:09:37,128 to the `packages` configuration field. 2026-03-13T22:09:37,129 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,129 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,130 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,131 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,132 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,133 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' to be distributed and are 2026-03-13T22:09:37,133 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs' via 2026-03-13T22:09:37,134 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,135 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,135 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,136 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,137 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,138 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,139 even if it does not contain any `.py` files. 2026-03-13T22:09:37,139 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,139 directory, all directories are treated like packages. 2026-03-13T22:09:37,140 ******************************************************************************** 2026-03-13T22:09:37,141 !! 2026-03-13T22:09:37,141 check.warn(importable) 2026-03-13T22:09:37,142 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is absent from the `packages` configuration. 2026-03-13T22:09:37,142 !! 2026-03-13T22:09:37,143 ******************************************************************************** 2026-03-13T22:09:37,144 ############################ 2026-03-13T22:09:37,145 # Package would be ignored # 2026-03-13T22:09:37,145 ############################ 2026-03-13T22:09:37,146 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' as an importable package[^1], 2026-03-13T22:09:37,146 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,147 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,147 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' is explicitly added 2026-03-13T22:09:37,148 to the `packages` configuration field. 2026-03-13T22:09:37,149 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,149 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,150 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,150 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,151 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,152 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' to be distributed and are 2026-03-13T22:09:37,152 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.base_pairs.stacking' via 2026-03-13T22:09:37,153 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,153 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,153 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,154 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,156 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,157 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,158 even if it does not contain any `.py` files. 2026-03-13T22:09:37,158 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,159 directory, all directories are treated like packages. 2026-03-13T22:09:37,160 ******************************************************************************** 2026-03-13T22:09:37,161 !! 2026-03-13T22:09:37,161 check.warn(importable) 2026-03-13T22:09:37,162 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is absent from the `packages` configuration. 2026-03-13T22:09:37,162 !! 2026-03-13T22:09:37,164 ******************************************************************************** 2026-03-13T22:09:37,164 ############################ 2026-03-13T22:09:37,164 # Package would be ignored # 2026-03-13T22:09:37,165 ############################ 2026-03-13T22:09:37,165 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' as an importable package[^1], 2026-03-13T22:09:37,166 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,167 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,168 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' is explicitly added 2026-03-13T22:09:37,168 to the `packages` configuration field. 2026-03-13T22:09:37,169 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,170 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,170 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,172 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,172 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,173 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' to be distributed and are 2026-03-13T22:09:37,173 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.modification_fragments' via 2026-03-13T22:09:37,174 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,174 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,174 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,175 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,176 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,177 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,177 even if it does not contain any `.py` files. 2026-03-13T22:09:37,178 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,178 directory, all directories are treated like packages. 2026-03-13T22:09:37,178 ******************************************************************************** 2026-03-13T22:09:37,179 !! 2026-03-13T22:09:37,180 check.warn(importable) 2026-03-13T22:09:37,180 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is absent from the `packages` configuration. 2026-03-13T22:09:37,180 !! 2026-03-13T22:09:37,181 ******************************************************************************** 2026-03-13T22:09:37,182 ############################ 2026-03-13T22:09:37,182 # Package would be ignored # 2026-03-13T22:09:37,183 ############################ 2026-03-13T22:09:37,183 Python recognizes 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' as an importable package[^1], 2026-03-13T22:09:37,184 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,185 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,185 package, please make sure that 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' is explicitly added 2026-03-13T22:09:37,186 to the `packages` configuration field. 2026-03-13T22:09:37,187 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,188 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,188 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,189 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,190 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,191 If you don't want 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' to be distributed and are 2026-03-13T22:09:37,191 already explicitly excluding 'rna_tools.tools.mini_moderna3.moderna.data.standard_bases' via 2026-03-13T22:09:37,192 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,192 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,193 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,194 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,195 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,197 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,197 even if it does not contain any `.py` files. 2026-03-13T22:09:37,198 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,198 directory, all directories are treated like packages. 2026-03-13T22:09:37,198 ******************************************************************************** 2026-03-13T22:09:37,199 !! 2026-03-13T22:09:37,200 check.warn(importable) 2026-03-13T22:09:37,200 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARFAR2.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:37,200 !! 2026-03-13T22:09:37,201 ******************************************************************************** 2026-03-13T22:09:37,201 ############################ 2026-03-13T22:09:37,202 # Package would be ignored # 2026-03-13T22:09:37,202 ############################ 2026-03-13T22:09:37,203 Python recognizes 'rna_tools.tools.mq.FARFAR2.test_output' as an importable package[^1], 2026-03-13T22:09:37,203 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,204 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,204 package, please make sure that 'rna_tools.tools.mq.FARFAR2.test_output' is explicitly added 2026-03-13T22:09:37,205 to the `packages` configuration field. 2026-03-13T22:09:37,206 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,206 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,207 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,208 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,209 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,210 If you don't want 'rna_tools.tools.mq.FARFAR2.test_output' to be distributed and are 2026-03-13T22:09:37,211 already explicitly excluding 'rna_tools.tools.mq.FARFAR2.test_output' via 2026-03-13T22:09:37,211 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,212 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,212 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,213 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,214 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,216 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,216 even if it does not contain any `.py` files. 2026-03-13T22:09:37,216 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,217 directory, all directories are treated like packages. 2026-03-13T22:09:37,217 ******************************************************************************** 2026-03-13T22:09:37,218 !! 2026-03-13T22:09:37,219 check.warn(importable) 2026-03-13T22:09:37,220 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.FARNA.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:37,220 !! 2026-03-13T22:09:37,221 ******************************************************************************** 2026-03-13T22:09:37,222 ############################ 2026-03-13T22:09:37,223 # Package would be ignored # 2026-03-13T22:09:37,223 ############################ 2026-03-13T22:09:37,224 Python recognizes 'rna_tools.tools.mq.FARNA.test_output' as an importable package[^1], 2026-03-13T22:09:37,224 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,225 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,225 package, please make sure that 'rna_tools.tools.mq.FARNA.test_output' is explicitly added 2026-03-13T22:09:37,226 to the `packages` configuration field. 2026-03-13T22:09:37,226 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,227 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,227 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,228 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,229 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,229 If you don't want 'rna_tools.tools.mq.FARNA.test_output' to be distributed and are 2026-03-13T22:09:37,230 already explicitly excluding 'rna_tools.tools.mq.FARNA.test_output' via 2026-03-13T22:09:37,230 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,231 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,231 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,232 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,233 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,234 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,235 even if it does not contain any `.py` files. 2026-03-13T22:09:37,235 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,236 directory, all directories are treated like packages. 2026-03-13T22:09:37,237 ******************************************************************************** 2026-03-13T22:09:37,238 !! 2026-03-13T22:09:37,238 check.warn(importable) 2026-03-13T22:09:37,239 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.RNAkb.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,240 !! 2026-03-13T22:09:37,241 ******************************************************************************** 2026-03-13T22:09:37,242 ############################ 2026-03-13T22:09:37,242 # Package would be ignored # 2026-03-13T22:09:37,243 ############################ 2026-03-13T22:09:37,243 Python recognizes 'rna_tools.tools.mq.RNAkb.test_data' as an importable package[^1], 2026-03-13T22:09:37,244 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,245 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,245 package, please make sure that 'rna_tools.tools.mq.RNAkb.test_data' is explicitly added 2026-03-13T22:09:37,245 to the `packages` configuration field. 2026-03-13T22:09:37,247 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,247 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,248 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,249 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,250 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,251 If you don't want 'rna_tools.tools.mq.RNAkb.test_data' to be distributed and are 2026-03-13T22:09:37,252 already explicitly excluding 'rna_tools.tools.mq.RNAkb.test_data' via 2026-03-13T22:09:37,252 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,253 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,254 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,254 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,256 even if it does not contain any `.py` files. 2026-03-13T22:09:37,256 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,257 directory, all directories are treated like packages. 2026-03-13T22:09:37,257 ******************************************************************************** 2026-03-13T22:09:37,258 !! 2026-03-13T22:09:37,258 check.warn(importable) 2026-03-13T22:09:37,258 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.SimRNA.test' is absent from the `packages` configuration. 2026-03-13T22:09:37,259 !! 2026-03-13T22:09:37,260 ******************************************************************************** 2026-03-13T22:09:37,260 ############################ 2026-03-13T22:09:37,260 # Package would be ignored # 2026-03-13T22:09:37,261 ############################ 2026-03-13T22:09:37,261 Python recognizes 'rna_tools.tools.mq.SimRNA.test' as an importable package[^1], 2026-03-13T22:09:37,262 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,263 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,264 package, please make sure that 'rna_tools.tools.mq.SimRNA.test' is explicitly added 2026-03-13T22:09:37,264 to the `packages` configuration field. 2026-03-13T22:09:37,265 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,266 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,266 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,267 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,268 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,269 If you don't want 'rna_tools.tools.mq.SimRNA.test' to be distributed and are 2026-03-13T22:09:37,270 already explicitly excluding 'rna_tools.tools.mq.SimRNA.test' via 2026-03-13T22:09:37,270 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,271 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,271 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,272 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,273 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,275 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,276 even if it does not contain any `.py` files. 2026-03-13T22:09:37,276 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,277 directory, all directories are treated like packages. 2026-03-13T22:09:37,277 ******************************************************************************** 2026-03-13T22:09:37,279 !! 2026-03-13T22:09:37,279 check.warn(importable) 2026-03-13T22:09:37,280 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.eSCORE.test' is absent from the `packages` configuration. 2026-03-13T22:09:37,280 !! 2026-03-13T22:09:37,281 ******************************************************************************** 2026-03-13T22:09:37,281 ############################ 2026-03-13T22:09:37,281 # Package would be ignored # 2026-03-13T22:09:37,282 ############################ 2026-03-13T22:09:37,282 Python recognizes 'rna_tools.tools.mq.eSCORE.test' as an importable package[^1], 2026-03-13T22:09:37,283 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,283 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,284 package, please make sure that 'rna_tools.tools.mq.eSCORE.test' is explicitly added 2026-03-13T22:09:37,284 to the `packages` configuration field. 2026-03-13T22:09:37,285 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,285 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,286 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,287 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,287 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,288 If you don't want 'rna_tools.tools.mq.eSCORE.test' to be distributed and are 2026-03-13T22:09:37,289 already explicitly excluding 'rna_tools.tools.mq.eSCORE.test' via 2026-03-13T22:09:37,289 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,290 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,290 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,291 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,293 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,295 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,295 even if it does not contain any `.py` files. 2026-03-13T22:09:37,296 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,296 directory, all directories are treated like packages. 2026-03-13T22:09:37,297 ******************************************************************************** 2026-03-13T22:09:37,298 !! 2026-03-13T22:09:37,298 check.warn(importable) 2026-03-13T22:09:37,299 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.test' is absent from the `packages` configuration. 2026-03-13T22:09:37,299 !! 2026-03-13T22:09:37,300 ******************************************************************************** 2026-03-13T22:09:37,301 ############################ 2026-03-13T22:09:37,301 # Package would be ignored # 2026-03-13T22:09:37,301 ############################ 2026-03-13T22:09:37,302 Python recognizes 'rna_tools.tools.mq.test' as an importable package[^1], 2026-03-13T22:09:37,302 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,304 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,304 package, please make sure that 'rna_tools.tools.mq.test' is explicitly added 2026-03-13T22:09:37,305 to the `packages` configuration field. 2026-03-13T22:09:37,306 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,306 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,307 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,307 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,308 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,309 If you don't want 'rna_tools.tools.mq.test' to be distributed and are 2026-03-13T22:09:37,309 already explicitly excluding 'rna_tools.tools.mq.test' via 2026-03-13T22:09:37,310 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,310 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,310 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,311 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,312 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,313 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,313 even if it does not contain any `.py` files. 2026-03-13T22:09:37,314 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,314 directory, all directories are treated like packages. 2026-03-13T22:09:37,314 ******************************************************************************** 2026-03-13T22:09:37,315 !! 2026-03-13T22:09:37,315 check.warn(importable) 2026-03-13T22:09:37,316 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.mq.tmp' is absent from the `packages` configuration. 2026-03-13T22:09:37,316 !! 2026-03-13T22:09:37,317 ******************************************************************************** 2026-03-13T22:09:37,318 ############################ 2026-03-13T22:09:37,318 # Package would be ignored # 2026-03-13T22:09:37,319 ############################ 2026-03-13T22:09:37,320 Python recognizes 'rna_tools.tools.mq.tmp' as an importable package[^1], 2026-03-13T22:09:37,320 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,321 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,322 package, please make sure that 'rna_tools.tools.mq.tmp' is explicitly added 2026-03-13T22:09:37,322 to the `packages` configuration field. 2026-03-13T22:09:37,323 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,324 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,324 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,325 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,326 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,327 If you don't want 'rna_tools.tools.mq.tmp' to be distributed and are 2026-03-13T22:09:37,328 already explicitly excluding 'rna_tools.tools.mq.tmp' via 2026-03-13T22:09:37,328 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,329 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,329 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,330 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,331 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,333 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,334 even if it does not contain any `.py` files. 2026-03-13T22:09:37,334 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,334 directory, all directories are treated like packages. 2026-03-13T22:09:37,335 ******************************************************************************** 2026-03-13T22:09:37,335 !! 2026-03-13T22:09:37,336 check.warn(importable) 2026-03-13T22:09:37,336 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.openfold' is absent from the `packages` configuration. 2026-03-13T22:09:37,337 !! 2026-03-13T22:09:37,337 ******************************************************************************** 2026-03-13T22:09:37,338 ############################ 2026-03-13T22:09:37,338 # Package would be ignored # 2026-03-13T22:09:37,338 ############################ 2026-03-13T22:09:37,339 Python recognizes 'rna_tools.tools.openfold' as an importable package[^1], 2026-03-13T22:09:37,339 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,340 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,340 package, please make sure that 'rna_tools.tools.openfold' is explicitly added 2026-03-13T22:09:37,341 to the `packages` configuration field. 2026-03-13T22:09:37,342 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,343 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,343 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,344 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,346 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,347 If you don't want 'rna_tools.tools.openfold' to be distributed and are 2026-03-13T22:09:37,347 already explicitly excluding 'rna_tools.tools.openfold' via 2026-03-13T22:09:37,348 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,348 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,349 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,350 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,351 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,352 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,353 even if it does not contain any `.py` files. 2026-03-13T22:09:37,353 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,354 directory, all directories are treated like packages. 2026-03-13T22:09:37,354 ******************************************************************************** 2026-03-13T22:09:37,355 !! 2026-03-13T22:09:37,356 check.warn(importable) 2026-03-13T22:09:37,356 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,357 !! 2026-03-13T22:09:37,358 ******************************************************************************** 2026-03-13T22:09:37,358 ############################ 2026-03-13T22:09:37,359 # Package would be ignored # 2026-03-13T22:09:37,360 ############################ 2026-03-13T22:09:37,360 Python recognizes 'rna_tools.tools.pdbs_measure_atom_dists.test_data' as an importable package[^1], 2026-03-13T22:09:37,361 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,362 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,362 package, please make sure that 'rna_tools.tools.pdbs_measure_atom_dists.test_data' is explicitly added 2026-03-13T22:09:37,363 to the `packages` configuration field. 2026-03-13T22:09:37,363 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,364 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,364 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,365 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,366 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,366 If you don't want 'rna_tools.tools.pdbs_measure_atom_dists.test_data' to be distributed and are 2026-03-13T22:09:37,367 already explicitly excluding 'rna_tools.tools.pdbs_measure_atom_dists.test_data' via 2026-03-13T22:09:37,367 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,368 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,368 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,369 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,370 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,372 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,372 even if it does not contain any `.py` files. 2026-03-13T22:09:37,373 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,373 directory, all directories are treated like packages. 2026-03-13T22:09:37,374 ******************************************************************************** 2026-03-13T22:09:37,375 !! 2026-03-13T22:09:37,375 check.warn(importable) 2026-03-13T22:09:37,376 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.plotting.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,376 !! 2026-03-13T22:09:37,377 ******************************************************************************** 2026-03-13T22:09:37,377 ############################ 2026-03-13T22:09:37,378 # Package would be ignored # 2026-03-13T22:09:37,378 ############################ 2026-03-13T22:09:37,379 Python recognizes 'rna_tools.tools.plotting.test_data' as an importable package[^1], 2026-03-13T22:09:37,379 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,380 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,381 package, please make sure that 'rna_tools.tools.plotting.test_data' is explicitly added 2026-03-13T22:09:37,381 to the `packages` configuration field. 2026-03-13T22:09:37,382 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,382 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,383 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,384 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,385 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,386 If you don't want 'rna_tools.tools.plotting.test_data' to be distributed and are 2026-03-13T22:09:37,386 already explicitly excluding 'rna_tools.tools.plotting.test_data' via 2026-03-13T22:09:37,387 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,387 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,388 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,388 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,389 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,390 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,391 even if it does not contain any `.py` files. 2026-03-13T22:09:37,391 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,392 directory, all directories are treated like packages. 2026-03-13T22:09:37,392 ******************************************************************************** 2026-03-13T22:09:37,393 !! 2026-03-13T22:09:37,393 check.warn(importable) 2026-03-13T22:09:37,394 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.proteins' is absent from the `packages` configuration. 2026-03-13T22:09:37,394 !! 2026-03-13T22:09:37,395 ******************************************************************************** 2026-03-13T22:09:37,395 ############################ 2026-03-13T22:09:37,396 # Package would be ignored # 2026-03-13T22:09:37,396 ############################ 2026-03-13T22:09:37,397 Python recognizes 'rna_tools.tools.proteins' as an importable package[^1], 2026-03-13T22:09:37,397 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,398 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,398 package, please make sure that 'rna_tools.tools.proteins' is explicitly added 2026-03-13T22:09:37,399 to the `packages` configuration field. 2026-03-13T22:09:37,400 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,401 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,401 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,402 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,403 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,404 If you don't want 'rna_tools.tools.proteins' to be distributed and are 2026-03-13T22:09:37,404 already explicitly excluding 'rna_tools.tools.proteins' via 2026-03-13T22:09:37,405 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,405 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,405 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,406 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,407 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,409 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,410 even if it does not contain any `.py` files. 2026-03-13T22:09:37,410 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,411 directory, all directories are treated like packages. 2026-03-13T22:09:37,411 ******************************************************************************** 2026-03-13T22:09:37,412 !! 2026-03-13T22:09:37,413 check.warn(importable) 2026-03-13T22:09:37,414 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv' is absent from the `packages` configuration. 2026-03-13T22:09:37,414 !! 2026-03-13T22:09:37,415 ******************************************************************************** 2026-03-13T22:09:37,416 ############################ 2026-03-13T22:09:37,416 # Package would be ignored # 2026-03-13T22:09:37,416 ############################ 2026-03-13T22:09:37,417 Python recognizes 'rna_tools.tools.pymol_color_by_conserv' as an importable package[^1], 2026-03-13T22:09:37,417 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,418 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,418 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv' is explicitly added 2026-03-13T22:09:37,418 to the `packages` configuration field. 2026-03-13T22:09:37,419 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,420 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,420 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,421 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,422 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,422 If you don't want 'rna_tools.tools.pymol_color_by_conserv' to be distributed and are 2026-03-13T22:09:37,423 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv' via 2026-03-13T22:09:37,423 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,424 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,424 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,425 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,427 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,428 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,429 even if it does not contain any `.py` files. 2026-03-13T22:09:37,429 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,430 directory, all directories are treated like packages. 2026-03-13T22:09:37,430 ******************************************************************************** 2026-03-13T22:09:37,431 !! 2026-03-13T22:09:37,432 check.warn(importable) 2026-03-13T22:09:37,432 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is absent from the `packages` configuration. 2026-03-13T22:09:37,433 !! 2026-03-13T22:09:37,434 ******************************************************************************** 2026-03-13T22:09:37,434 ############################ 2026-03-13T22:09:37,434 # Package would be ignored # 2026-03-13T22:09:37,435 ############################ 2026-03-13T22:09:37,435 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' as an importable package[^1], 2026-03-13T22:09:37,436 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,437 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,437 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' is explicitly added 2026-03-13T22:09:37,438 to the `packages` configuration field. 2026-03-13T22:09:37,439 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,440 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,440 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,441 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,442 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,443 If you don't want 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' to be distributed and are 2026-03-13T22:09:37,443 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.data.cwc15' via 2026-03-13T22:09:37,443 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,444 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,444 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,445 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,446 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,447 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,448 even if it does not contain any `.py` files. 2026-03-13T22:09:37,448 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,449 directory, all directories are treated like packages. 2026-03-13T22:09:37,449 ******************************************************************************** 2026-03-13T22:09:37,450 !! 2026-03-13T22:09:37,451 check.warn(importable) 2026-03-13T22:09:37,451 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_color_by_conserv.docs' is absent from the `packages` configuration. 2026-03-13T22:09:37,452 !! 2026-03-13T22:09:37,453 ******************************************************************************** 2026-03-13T22:09:37,453 ############################ 2026-03-13T22:09:37,454 # Package would be ignored # 2026-03-13T22:09:37,454 ############################ 2026-03-13T22:09:37,455 Python recognizes 'rna_tools.tools.pymol_color_by_conserv.docs' as an importable package[^1], 2026-03-13T22:09:37,455 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,456 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,457 package, please make sure that 'rna_tools.tools.pymol_color_by_conserv.docs' is explicitly added 2026-03-13T22:09:37,457 to the `packages` configuration field. 2026-03-13T22:09:37,458 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,459 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,459 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,460 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,461 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,462 If you don't want 'rna_tools.tools.pymol_color_by_conserv.docs' to be distributed and are 2026-03-13T22:09:37,463 already explicitly excluding 'rna_tools.tools.pymol_color_by_conserv.docs' via 2026-03-13T22:09:37,463 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,464 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,464 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,465 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,466 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,467 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,468 even if it does not contain any `.py` files. 2026-03-13T22:09:37,468 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,468 directory, all directories are treated like packages. 2026-03-13T22:09:37,469 ******************************************************************************** 2026-03-13T22:09:37,469 !! 2026-03-13T22:09:37,470 check.warn(importable) 2026-03-13T22:09:37,470 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.docs' is absent from the `packages` configuration. 2026-03-13T22:09:37,471 !! 2026-03-13T22:09:37,471 ******************************************************************************** 2026-03-13T22:09:37,472 ############################ 2026-03-13T22:09:37,472 # Package would be ignored # 2026-03-13T22:09:37,473 ############################ 2026-03-13T22:09:37,473 Python recognizes 'rna_tools.tools.pymol_drawing.docs' as an importable package[^1], 2026-03-13T22:09:37,473 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,474 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,474 package, please make sure that 'rna_tools.tools.pymol_drawing.docs' is explicitly added 2026-03-13T22:09:37,475 to the `packages` configuration field. 2026-03-13T22:09:37,476 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,477 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,477 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,478 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,480 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,481 If you don't want 'rna_tools.tools.pymol_drawing.docs' to be distributed and are 2026-03-13T22:09:37,481 already explicitly excluding 'rna_tools.tools.pymol_drawing.docs' via 2026-03-13T22:09:37,482 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,483 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,483 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,484 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,485 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,487 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,487 even if it does not contain any `.py` files. 2026-03-13T22:09:37,488 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,488 directory, all directories are treated like packages. 2026-03-13T22:09:37,489 ******************************************************************************** 2026-03-13T22:09:37,490 !! 2026-03-13T22:09:37,490 check.warn(importable) 2026-03-13T22:09:37,491 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_drawing.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,491 !! 2026-03-13T22:09:37,492 ******************************************************************************** 2026-03-13T22:09:37,493 ############################ 2026-03-13T22:09:37,494 # Package would be ignored # 2026-03-13T22:09:37,494 ############################ 2026-03-13T22:09:37,494 Python recognizes 'rna_tools.tools.pymol_drawing.test_data' as an importable package[^1], 2026-03-13T22:09:37,495 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,496 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,497 package, please make sure that 'rna_tools.tools.pymol_drawing.test_data' is explicitly added 2026-03-13T22:09:37,497 to the `packages` configuration field. 2026-03-13T22:09:37,498 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,498 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,498 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,499 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,500 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,501 If you don't want 'rna_tools.tools.pymol_drawing.test_data' to be distributed and are 2026-03-13T22:09:37,501 already explicitly excluding 'rna_tools.tools.pymol_drawing.test_data' via 2026-03-13T22:09:37,502 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,502 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,503 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,503 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,504 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,506 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,506 even if it does not contain any `.py` files. 2026-03-13T22:09:37,506 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,507 directory, all directories are treated like packages. 2026-03-13T22:09:37,507 ******************************************************************************** 2026-03-13T22:09:37,508 !! 2026-03-13T22:09:37,509 check.warn(importable) 2026-03-13T22:09:37,509 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator' is absent from the `packages` configuration. 2026-03-13T22:09:37,510 !! 2026-03-13T22:09:37,511 ******************************************************************************** 2026-03-13T22:09:37,511 ############################ 2026-03-13T22:09:37,512 # Package would be ignored # 2026-03-13T22:09:37,512 ############################ 2026-03-13T22:09:37,513 Python recognizes 'rna_tools.tools.pymol_preview_generator' as an importable package[^1], 2026-03-13T22:09:37,513 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,514 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,515 package, please make sure that 'rna_tools.tools.pymol_preview_generator' is explicitly added 2026-03-13T22:09:37,515 to the `packages` configuration field. 2026-03-13T22:09:37,516 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,517 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,517 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,519 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,520 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,521 If you don't want 'rna_tools.tools.pymol_preview_generator' to be distributed and are 2026-03-13T22:09:37,521 already explicitly excluding 'rna_tools.tools.pymol_preview_generator' via 2026-03-13T22:09:37,521 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,522 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,522 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,523 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,524 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,525 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,525 even if it does not contain any `.py` files. 2026-03-13T22:09:37,526 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,526 directory, all directories are treated like packages. 2026-03-13T22:09:37,526 ******************************************************************************** 2026-03-13T22:09:37,527 !! 2026-03-13T22:09:37,528 check.warn(importable) 2026-03-13T22:09:37,528 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.bash' is absent from the `packages` configuration. 2026-03-13T22:09:37,528 !! 2026-03-13T22:09:37,530 ******************************************************************************** 2026-03-13T22:09:37,530 ############################ 2026-03-13T22:09:37,531 # Package would be ignored # 2026-03-13T22:09:37,531 ############################ 2026-03-13T22:09:37,532 Python recognizes 'rna_tools.tools.pymol_preview_generator.bash' as an importable package[^1], 2026-03-13T22:09:37,533 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,534 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,534 package, please make sure that 'rna_tools.tools.pymol_preview_generator.bash' is explicitly added 2026-03-13T22:09:37,535 to the `packages` configuration field. 2026-03-13T22:09:37,536 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,536 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,537 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,538 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,539 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,540 If you don't want 'rna_tools.tools.pymol_preview_generator.bash' to be distributed and are 2026-03-13T22:09:37,541 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.bash' via 2026-03-13T22:09:37,541 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,542 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,542 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,543 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,544 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,546 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,547 even if it does not contain any `.py` files. 2026-03-13T22:09:37,547 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,548 directory, all directories are treated like packages. 2026-03-13T22:09:37,549 ******************************************************************************** 2026-03-13T22:09:37,549 !! 2026-03-13T22:09:37,550 check.warn(importable) 2026-03-13T22:09:37,550 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.docs' is absent from the `packages` configuration. 2026-03-13T22:09:37,550 !! 2026-03-13T22:09:37,551 ******************************************************************************** 2026-03-13T22:09:37,552 ############################ 2026-03-13T22:09:37,552 # Package would be ignored # 2026-03-13T22:09:37,552 ############################ 2026-03-13T22:09:37,553 Python recognizes 'rna_tools.tools.pymol_preview_generator.docs' as an importable package[^1], 2026-03-13T22:09:37,553 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,554 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,554 package, please make sure that 'rna_tools.tools.pymol_preview_generator.docs' is explicitly added 2026-03-13T22:09:37,555 to the `packages` configuration field. 2026-03-13T22:09:37,555 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,556 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,556 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,557 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,558 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,559 If you don't want 'rna_tools.tools.pymol_preview_generator.docs' to be distributed and are 2026-03-13T22:09:37,560 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.docs' via 2026-03-13T22:09:37,560 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,561 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,561 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,563 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,564 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,565 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,566 even if it does not contain any `.py` files. 2026-03-13T22:09:37,566 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,567 directory, all directories are treated like packages. 2026-03-13T22:09:37,567 ******************************************************************************** 2026-03-13T22:09:37,568 !! 2026-03-13T22:09:37,569 check.warn(importable) 2026-03-13T22:09:37,569 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.pymol_preview_generator.zsh' is absent from the `packages` configuration. 2026-03-13T22:09:37,570 !! 2026-03-13T22:09:37,571 ******************************************************************************** 2026-03-13T22:09:37,571 ############################ 2026-03-13T22:09:37,572 # Package would be ignored # 2026-03-13T22:09:37,573 ############################ 2026-03-13T22:09:37,573 Python recognizes 'rna_tools.tools.pymol_preview_generator.zsh' as an importable package[^1], 2026-03-13T22:09:37,574 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,575 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,575 package, please make sure that 'rna_tools.tools.pymol_preview_generator.zsh' is explicitly added 2026-03-13T22:09:37,576 to the `packages` configuration field. 2026-03-13T22:09:37,577 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,577 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,577 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,578 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,579 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,580 If you don't want 'rna_tools.tools.pymol_preview_generator.zsh' to be distributed and are 2026-03-13T22:09:37,580 already explicitly excluding 'rna_tools.tools.pymol_preview_generator.zsh' via 2026-03-13T22:09:37,580 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,581 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,581 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,582 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,583 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,584 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,585 even if it does not contain any `.py` files. 2026-03-13T22:09:37,585 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,586 directory, all directories are treated like packages. 2026-03-13T22:09:37,586 ******************************************************************************** 2026-03-13T22:09:37,588 !! 2026-03-13T22:09:37,588 check.warn(importable) 2026-03-13T22:09:37,589 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.renum_pdb_to_aln.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,590 !! 2026-03-13T22:09:37,590 ******************************************************************************** 2026-03-13T22:09:37,591 ############################ 2026-03-13T22:09:37,592 # Package would be ignored # 2026-03-13T22:09:37,592 ############################ 2026-03-13T22:09:37,593 Python recognizes 'rna_tools.tools.renum_pdb_to_aln.test_data' as an importable package[^1], 2026-03-13T22:09:37,593 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,594 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,595 package, please make sure that 'rna_tools.tools.renum_pdb_to_aln.test_data' is explicitly added 2026-03-13T22:09:37,595 to the `packages` configuration field. 2026-03-13T22:09:37,596 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,597 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,597 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,598 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,599 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,600 If you don't want 'rna_tools.tools.renum_pdb_to_aln.test_data' to be distributed and are 2026-03-13T22:09:37,601 already explicitly excluding 'rna_tools.tools.renum_pdb_to_aln.test_data' via 2026-03-13T22:09:37,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,602 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,603 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,605 even if it does not contain any `.py` files. 2026-03-13T22:09:37,606 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,606 directory, all directories are treated like packages. 2026-03-13T22:09:37,606 ******************************************************************************** 2026-03-13T22:09:37,607 !! 2026-03-13T22:09:37,608 check.warn(importable) 2026-03-13T22:09:37,608 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.pngs' is absent from the `packages` configuration. 2026-03-13T22:09:37,609 !! 2026-03-13T22:09:37,610 ******************************************************************************** 2026-03-13T22:09:37,610 ############################ 2026-03-13T22:09:37,610 # Package would be ignored # 2026-03-13T22:09:37,611 ############################ 2026-03-13T22:09:37,611 Python recognizes 'rna_tools.tools.rna_alignment.pngs' as an importable package[^1], 2026-03-13T22:09:37,612 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,612 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,613 package, please make sure that 'rna_tools.tools.rna_alignment.pngs' is explicitly added 2026-03-13T22:09:37,614 to the `packages` configuration field. 2026-03-13T22:09:37,615 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,615 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,616 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,617 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,618 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,619 If you don't want 'rna_tools.tools.rna_alignment.pngs' to be distributed and are 2026-03-13T22:09:37,620 already explicitly excluding 'rna_tools.tools.rna_alignment.pngs' via 2026-03-13T22:09:37,620 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,621 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,621 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,622 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,623 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,625 even if it does not contain any `.py` files. 2026-03-13T22:09:37,626 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,626 directory, all directories are treated like packages. 2026-03-13T22:09:37,627 ******************************************************************************** 2026-03-13T22:09:37,628 !! 2026-03-13T22:09:37,628 check.warn(importable) 2026-03-13T22:09:37,629 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,630 !! 2026-03-13T22:09:37,631 ******************************************************************************** 2026-03-13T22:09:37,631 ############################ 2026-03-13T22:09:37,632 # Package would be ignored # 2026-03-13T22:09:37,632 ############################ 2026-03-13T22:09:37,632 Python recognizes 'rna_tools.tools.rna_alignment.test_data' as an importable package[^1], 2026-03-13T22:09:37,633 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,633 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,634 package, please make sure that 'rna_tools.tools.rna_alignment.test_data' is explicitly added 2026-03-13T22:09:37,634 to the `packages` configuration field. 2026-03-13T22:09:37,635 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,635 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,636 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,636 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,637 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,638 If you don't want 'rna_tools.tools.rna_alignment.test_data' to be distributed and are 2026-03-13T22:09:37,638 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data' via 2026-03-13T22:09:37,639 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,639 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,640 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,641 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,642 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,643 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,644 even if it does not contain any `.py` files. 2026-03-13T22:09:37,644 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,645 directory, all directories are treated like packages. 2026-03-13T22:09:37,645 ******************************************************************************** 2026-03-13T22:09:37,647 !! 2026-03-13T22:09:37,647 check.warn(importable) 2026-03-13T22:09:37,648 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.foldability' is absent from the `packages` configuration. 2026-03-13T22:09:37,648 !! 2026-03-13T22:09:37,649 ******************************************************************************** 2026-03-13T22:09:37,650 ############################ 2026-03-13T22:09:37,650 # Package would be ignored # 2026-03-13T22:09:37,650 ############################ 2026-03-13T22:09:37,651 Python recognizes 'rna_tools.tools.rna_alignment.test_data.foldability' as an importable package[^1], 2026-03-13T22:09:37,651 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,652 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,653 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.foldability' is explicitly added 2026-03-13T22:09:37,654 to the `packages` configuration field. 2026-03-13T22:09:37,655 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,655 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,656 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,657 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,657 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,658 If you don't want 'rna_tools.tools.rna_alignment.test_data.foldability' to be distributed and are 2026-03-13T22:09:37,659 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.foldability' via 2026-03-13T22:09:37,661 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,662 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,662 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,663 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,663 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,665 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,665 even if it does not contain any `.py` files. 2026-03-13T22:09:37,665 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,666 directory, all directories are treated like packages. 2026-03-13T22:09:37,666 ******************************************************************************** 2026-03-13T22:09:37,667 !! 2026-03-13T22:09:37,668 check.warn(importable) 2026-03-13T22:09:37,668 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is absent from the `packages` configuration. 2026-03-13T22:09:37,669 !! 2026-03-13T22:09:37,670 ******************************************************************************** 2026-03-13T22:09:37,671 ############################ 2026-03-13T22:09:37,671 # Package would be ignored # 2026-03-13T22:09:37,672 ############################ 2026-03-13T22:09:37,672 Python recognizes 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' as an importable package[^1], 2026-03-13T22:09:37,673 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,674 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,675 package, please make sure that 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' is explicitly added 2026-03-13T22:09:37,675 to the `packages` configuration field. 2026-03-13T22:09:37,676 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,677 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,677 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,678 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,679 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,680 If you don't want 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' to be distributed and are 2026-03-13T22:09:37,680 already explicitly excluding 'rna_tools.tools.rna_alignment.test_data.rchie_test_files' via 2026-03-13T22:09:37,681 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,681 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,682 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,683 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,684 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,685 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,686 even if it does not contain any `.py` files. 2026-03-13T22:09:37,686 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,686 directory, all directories are treated like packages. 2026-03-13T22:09:37,687 ******************************************************************************** 2026-03-13T22:09:37,687 !! 2026-03-13T22:09:37,688 check.warn(importable) 2026-03-13T22:09:37,688 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:37,688 !! 2026-03-13T22:09:37,689 ******************************************************************************** 2026-03-13T22:09:37,690 ############################ 2026-03-13T22:09:37,690 # Package would be ignored # 2026-03-13T22:09:37,690 ############################ 2026-03-13T22:09:37,691 Python recognizes 'rna_tools.tools.rna_alignment.test_output' as an importable package[^1], 2026-03-13T22:09:37,691 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,692 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,692 package, please make sure that 'rna_tools.tools.rna_alignment.test_output' is explicitly added 2026-03-13T22:09:37,693 to the `packages` configuration field. 2026-03-13T22:09:37,694 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,694 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,695 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,696 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,697 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,698 If you don't want 'rna_tools.tools.rna_alignment.test_output' to be distributed and are 2026-03-13T22:09:37,699 already explicitly excluding 'rna_tools.tools.rna_alignment.test_output' via 2026-03-13T22:09:37,699 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,700 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,701 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,702 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,703 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,704 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,705 even if it does not contain any `.py` files. 2026-03-13T22:09:37,705 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,705 directory, all directories are treated like packages. 2026-03-13T22:09:37,706 ******************************************************************************** 2026-03-13T22:09:37,707 !! 2026-03-13T22:09:37,708 check.warn(importable) 2026-03-13T22:09:37,708 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_alignment.utils.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,709 !! 2026-03-13T22:09:37,710 ******************************************************************************** 2026-03-13T22:09:37,710 ############################ 2026-03-13T22:09:37,711 # Package would be ignored # 2026-03-13T22:09:37,712 ############################ 2026-03-13T22:09:37,712 Python recognizes 'rna_tools.tools.rna_alignment.utils.test_data' as an importable package[^1], 2026-03-13T22:09:37,712 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,713 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,713 package, please make sure that 'rna_tools.tools.rna_alignment.utils.test_data' is explicitly added 2026-03-13T22:09:37,714 to the `packages` configuration field. 2026-03-13T22:09:37,715 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,715 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,715 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,716 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,717 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,718 If you don't want 'rna_tools.tools.rna_alignment.utils.test_data' to be distributed and are 2026-03-13T22:09:37,718 already explicitly excluding 'rna_tools.tools.rna_alignment.utils.test_data' via 2026-03-13T22:09:37,718 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,719 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,719 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,720 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,721 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,723 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,723 even if it does not contain any `.py` files. 2026-03-13T22:09:37,724 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,724 directory, all directories are treated like packages. 2026-03-13T22:09:37,725 ******************************************************************************** 2026-03-13T22:09:37,726 !! 2026-03-13T22:09:37,727 check.warn(importable) 2026-03-13T22:09:37,727 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_binding_affinity' is absent from the `packages` configuration. 2026-03-13T22:09:37,728 !! 2026-03-13T22:09:37,729 ******************************************************************************** 2026-03-13T22:09:37,729 ############################ 2026-03-13T22:09:37,730 # Package would be ignored # 2026-03-13T22:09:37,730 ############################ 2026-03-13T22:09:37,731 Python recognizes 'rna_tools.tools.rna_binding_affinity' as an importable package[^1], 2026-03-13T22:09:37,731 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,732 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,733 package, please make sure that 'rna_tools.tools.rna_binding_affinity' is explicitly added 2026-03-13T22:09:37,735 to the `packages` configuration field. 2026-03-13T22:09:37,737 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,737 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,738 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,739 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,740 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,741 If you don't want 'rna_tools.tools.rna_binding_affinity' to be distributed and are 2026-03-13T22:09:37,742 already explicitly excluding 'rna_tools.tools.rna_binding_affinity' via 2026-03-13T22:09:37,742 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,742 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,743 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,743 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,744 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,745 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,746 even if it does not contain any `.py` files. 2026-03-13T22:09:37,746 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,747 directory, all directories are treated like packages. 2026-03-13T22:09:37,747 ******************************************************************************** 2026-03-13T22:09:37,748 !! 2026-03-13T22:09:37,748 check.warn(importable) 2026-03-13T22:09:37,749 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,749 !! 2026-03-13T22:09:37,750 ******************************************************************************** 2026-03-13T22:09:37,751 ############################ 2026-03-13T22:09:37,751 # Package would be ignored # 2026-03-13T22:09:37,752 ############################ 2026-03-13T22:09:37,753 Python recognizes 'rna_tools.tools.rna_calc_evo_rmsd.test_data' as an importable package[^1], 2026-03-13T22:09:37,753 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,754 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,755 package, please make sure that 'rna_tools.tools.rna_calc_evo_rmsd.test_data' is explicitly added 2026-03-13T22:09:37,755 to the `packages` configuration field. 2026-03-13T22:09:37,757 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,757 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,758 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,759 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,760 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,761 If you don't want 'rna_tools.tools.rna_calc_evo_rmsd.test_data' to be distributed and are 2026-03-13T22:09:37,761 already explicitly excluding 'rna_tools.tools.rna_calc_evo_rmsd.test_data' via 2026-03-13T22:09:37,762 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,762 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,763 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,764 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,765 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,766 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,767 even if it does not contain any `.py` files. 2026-03-13T22:09:37,768 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,768 directory, all directories are treated like packages. 2026-03-13T22:09:37,769 ******************************************************************************** 2026-03-13T22:09:37,770 !! 2026-03-13T22:09:37,770 check.warn(importable) 2026-03-13T22:09:37,770 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_gdt' is absent from the `packages` configuration. 2026-03-13T22:09:37,771 !! 2026-03-13T22:09:37,771 ******************************************************************************** 2026-03-13T22:09:37,772 ############################ 2026-03-13T22:09:37,772 # Package would be ignored # 2026-03-13T22:09:37,772 ############################ 2026-03-13T22:09:37,773 Python recognizes 'rna_tools.tools.rna_calc_gdt' as an importable package[^1], 2026-03-13T22:09:37,773 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,774 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,774 package, please make sure that 'rna_tools.tools.rna_calc_gdt' is explicitly added 2026-03-13T22:09:37,775 to the `packages` configuration field. 2026-03-13T22:09:37,776 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,776 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,777 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,778 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,779 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,780 If you don't want 'rna_tools.tools.rna_calc_gdt' to be distributed and are 2026-03-13T22:09:37,780 already explicitly excluding 'rna_tools.tools.rna_calc_gdt' via 2026-03-13T22:09:37,781 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,781 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,782 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,783 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,784 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,786 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,786 even if it does not contain any `.py` files. 2026-03-13T22:09:37,787 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,787 directory, all directories are treated like packages. 2026-03-13T22:09:37,788 ******************************************************************************** 2026-03-13T22:09:37,789 !! 2026-03-13T22:09:37,789 check.warn(importable) 2026-03-13T22:09:37,790 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds' is absent from the `packages` configuration. 2026-03-13T22:09:37,790 !! 2026-03-13T22:09:37,791 ******************************************************************************** 2026-03-13T22:09:37,792 ############################ 2026-03-13T22:09:37,792 # Package would be ignored # 2026-03-13T22:09:37,793 ############################ 2026-03-13T22:09:37,794 Python recognizes 'rna_tools.tools.rna_calc_hbonds' as an importable package[^1], 2026-03-13T22:09:37,794 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,796 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,796 package, please make sure that 'rna_tools.tools.rna_calc_hbonds' is explicitly added 2026-03-13T22:09:37,796 to the `packages` configuration field. 2026-03-13T22:09:37,797 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,797 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,798 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,799 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,799 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,800 If you don't want 'rna_tools.tools.rna_calc_hbonds' to be distributed and are 2026-03-13T22:09:37,800 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds' via 2026-03-13T22:09:37,801 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,801 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,801 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,802 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,803 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,804 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,805 even if it does not contain any `.py` files. 2026-03-13T22:09:37,805 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,806 directory, all directories are treated like packages. 2026-03-13T22:09:37,806 ******************************************************************************** 2026-03-13T22:09:37,807 !! 2026-03-13T22:09:37,808 check.warn(importable) 2026-03-13T22:09:37,809 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.docs' is absent from the `packages` configuration. 2026-03-13T22:09:37,809 !! 2026-03-13T22:09:37,810 ******************************************************************************** 2026-03-13T22:09:37,811 ############################ 2026-03-13T22:09:37,812 # Package would be ignored # 2026-03-13T22:09:37,812 ############################ 2026-03-13T22:09:37,813 Python recognizes 'rna_tools.tools.rna_calc_hbonds.docs' as an importable package[^1], 2026-03-13T22:09:37,814 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,815 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,815 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.docs' is explicitly added 2026-03-13T22:09:37,816 to the `packages` configuration field. 2026-03-13T22:09:37,817 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,817 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,818 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,819 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,820 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,821 If you don't want 'rna_tools.tools.rna_calc_hbonds.docs' to be distributed and are 2026-03-13T22:09:37,821 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.docs' via 2026-03-13T22:09:37,822 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,822 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,823 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,824 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,825 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,826 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,826 even if it does not contain any `.py` files. 2026-03-13T22:09:37,827 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,827 directory, all directories are treated like packages. 2026-03-13T22:09:37,828 ******************************************************************************** 2026-03-13T22:09:37,828 !! 2026-03-13T22:09:37,829 check.warn(importable) 2026-03-13T22:09:37,829 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_hbonds.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,830 !! 2026-03-13T22:09:37,830 ******************************************************************************** 2026-03-13T22:09:37,831 ############################ 2026-03-13T22:09:37,831 # Package would be ignored # 2026-03-13T22:09:37,832 ############################ 2026-03-13T22:09:37,832 Python recognizes 'rna_tools.tools.rna_calc_hbonds.test_data' as an importable package[^1], 2026-03-13T22:09:37,832 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,833 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,834 package, please make sure that 'rna_tools.tools.rna_calc_hbonds.test_data' is explicitly added 2026-03-13T22:09:37,834 to the `packages` configuration field. 2026-03-13T22:09:37,835 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,836 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,836 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,837 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,838 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,840 If you don't want 'rna_tools.tools.rna_calc_hbonds.test_data' to be distributed and are 2026-03-13T22:09:37,840 already explicitly excluding 'rna_tools.tools.rna_calc_hbonds.test_data' via 2026-03-13T22:09:37,841 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,841 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,842 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,843 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,844 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,845 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,846 even if it does not contain any `.py` files. 2026-03-13T22:09:37,846 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,847 directory, all directories are treated like packages. 2026-03-13T22:09:37,847 ******************************************************************************** 2026-03-13T22:09:37,848 !! 2026-03-13T22:09:37,849 check.warn(importable) 2026-03-13T22:09:37,849 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.doc' is absent from the `packages` configuration. 2026-03-13T22:09:37,850 !! 2026-03-13T22:09:37,851 ******************************************************************************** 2026-03-13T22:09:37,852 ############################ 2026-03-13T22:09:37,852 # Package would be ignored # 2026-03-13T22:09:37,852 ############################ 2026-03-13T22:09:37,853 Python recognizes 'rna_tools.tools.rna_calc_inf.doc' as an importable package[^1], 2026-03-13T22:09:37,853 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,854 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,854 package, please make sure that 'rna_tools.tools.rna_calc_inf.doc' is explicitly added 2026-03-13T22:09:37,855 to the `packages` configuration field. 2026-03-13T22:09:37,856 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,856 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,856 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,857 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,858 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,859 If you don't want 'rna_tools.tools.rna_calc_inf.doc' to be distributed and are 2026-03-13T22:09:37,859 already explicitly excluding 'rna_tools.tools.rna_calc_inf.doc' via 2026-03-13T22:09:37,860 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,860 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,860 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,861 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,862 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,864 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,865 even if it does not contain any `.py` files. 2026-03-13T22:09:37,865 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,866 directory, all directories are treated like packages. 2026-03-13T22:09:37,867 ******************************************************************************** 2026-03-13T22:09:37,868 !! 2026-03-13T22:09:37,869 check.warn(importable) 2026-03-13T22:09:37,869 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,870 !! 2026-03-13T22:09:37,871 ******************************************************************************** 2026-03-13T22:09:37,871 ############################ 2026-03-13T22:09:37,872 # Package would be ignored # 2026-03-13T22:09:37,872 ############################ 2026-03-13T22:09:37,873 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data' as an importable package[^1], 2026-03-13T22:09:37,873 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,874 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,875 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data' is explicitly added 2026-03-13T22:09:37,875 to the `packages` configuration field. 2026-03-13T22:09:37,876 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,878 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,879 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,880 If you don't want 'rna_tools.tools.rna_calc_inf.test_data' to be distributed and are 2026-03-13T22:09:37,881 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data' via 2026-03-13T22:09:37,881 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,881 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,882 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,883 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,883 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,884 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,885 even if it does not contain any `.py` files. 2026-03-13T22:09:37,885 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,886 directory, all directories are treated like packages. 2026-03-13T22:09:37,886 ******************************************************************************** 2026-03-13T22:09:37,887 !! 2026-03-13T22:09:37,888 check.warn(importable) 2026-03-13T22:09:37,888 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_inf.test_data.rp13' is absent from the `packages` configuration. 2026-03-13T22:09:37,889 !! 2026-03-13T22:09:37,890 ******************************************************************************** 2026-03-13T22:09:37,890 ############################ 2026-03-13T22:09:37,891 # Package would be ignored # 2026-03-13T22:09:37,892 ############################ 2026-03-13T22:09:37,892 Python recognizes 'rna_tools.tools.rna_calc_inf.test_data.rp13' as an importable package[^1], 2026-03-13T22:09:37,893 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,894 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,894 package, please make sure that 'rna_tools.tools.rna_calc_inf.test_data.rp13' is explicitly added 2026-03-13T22:09:37,895 to the `packages` configuration field. 2026-03-13T22:09:37,896 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,897 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,897 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,898 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,899 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,900 If you don't want 'rna_tools.tools.rna_calc_inf.test_data.rp13' to be distributed and are 2026-03-13T22:09:37,900 already explicitly excluding 'rna_tools.tools.rna_calc_inf.test_data.rp13' via 2026-03-13T22:09:37,901 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,901 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,902 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,903 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,904 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,906 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,907 even if it does not contain any `.py` files. 2026-03-13T22:09:37,907 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,908 directory, all directories are treated like packages. 2026-03-13T22:09:37,908 ******************************************************************************** 2026-03-13T22:09:37,909 !! 2026-03-13T22:09:37,909 check.warn(importable) 2026-03-13T22:09:37,910 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is absent from the `packages` configuration. 2026-03-13T22:09:37,910 !! 2026-03-13T22:09:37,911 ******************************************************************************** 2026-03-13T22:09:37,911 ############################ 2026-03-13T22:09:37,912 # Package would be ignored # 2026-03-13T22:09:37,912 ############################ 2026-03-13T22:09:37,912 Python recognizes 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' as an importable package[^1], 2026-03-13T22:09:37,913 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,914 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,914 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' is explicitly added 2026-03-13T22:09:37,915 to the `packages` configuration field. 2026-03-13T22:09:37,915 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,916 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,916 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,918 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,919 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,920 If you don't want 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' to be distributed and are 2026-03-13T22:09:37,921 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.lib.rmsd.examples' via 2026-03-13T22:09:37,921 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,922 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,922 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,924 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,925 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,926 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,927 even if it does not contain any `.py` files. 2026-03-13T22:09:37,927 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,928 directory, all directories are treated like packages. 2026-03-13T22:09:37,928 ******************************************************************************** 2026-03-13T22:09:37,929 !! 2026-03-13T22:09:37,930 check.warn(importable) 2026-03-13T22:09:37,930 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:37,931 !! 2026-03-13T22:09:37,932 ******************************************************************************** 2026-03-13T22:09:37,933 ############################ 2026-03-13T22:09:37,933 # Package would be ignored # 2026-03-13T22:09:37,934 ############################ 2026-03-13T22:09:37,934 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data' as an importable package[^1], 2026-03-13T22:09:37,935 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,936 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,937 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data' is explicitly added 2026-03-13T22:09:37,937 to the `packages` configuration field. 2026-03-13T22:09:37,938 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,938 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,938 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,939 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,940 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,941 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data' to be distributed and are 2026-03-13T22:09:37,941 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data' via 2026-03-13T22:09:37,942 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,942 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,942 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,943 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,944 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,946 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,946 even if it does not contain any `.py` files. 2026-03-13T22:09:37,947 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,948 directory, all directories are treated like packages. 2026-03-13T22:09:37,948 ******************************************************************************** 2026-03-13T22:09:37,949 !! 2026-03-13T22:09:37,950 check.warn(importable) 2026-03-13T22:09:37,951 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is absent from the `packages` configuration. 2026-03-13T22:09:37,951 !! 2026-03-13T22:09:37,952 ******************************************************************************** 2026-03-13T22:09:37,953 ############################ 2026-03-13T22:09:37,954 # Package would be ignored # 2026-03-13T22:09:37,954 ############################ 2026-03-13T22:09:37,954 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.crops' as an importable package[^1], 2026-03-13T22:09:37,955 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,956 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,956 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.crops' is explicitly added 2026-03-13T22:09:37,957 to the `packages` configuration field. 2026-03-13T22:09:37,958 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,958 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,959 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,960 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,961 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,962 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.crops' to be distributed and are 2026-03-13T22:09:37,963 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.crops' via 2026-03-13T22:09:37,964 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,964 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,965 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,966 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,966 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,967 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,968 even if it does not contain any `.py` files. 2026-03-13T22:09:37,968 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,969 directory, all directories are treated like packages. 2026-03-13T22:09:37,969 ******************************************************************************** 2026-03-13T22:09:37,970 !! 2026-03-13T22:09:37,970 check.warn(importable) 2026-03-13T22:09:37,971 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is absent from the `packages` configuration. 2026-03-13T22:09:37,971 !! 2026-03-13T22:09:37,972 ******************************************************************************** 2026-03-13T22:09:37,972 ############################ 2026-03-13T22:09:37,973 # Package would be ignored # 2026-03-13T22:09:37,973 ############################ 2026-03-13T22:09:37,973 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' as an importable package[^1], 2026-03-13T22:09:37,974 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,975 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,976 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' is explicitly added 2026-03-13T22:09:37,976 to the `packages` configuration field. 2026-03-13T22:09:37,977 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,978 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,979 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,980 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:37,981 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:37,982 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' to be distributed and are 2026-03-13T22:09:37,982 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol' via 2026-03-13T22:09:37,983 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:37,983 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:37,984 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:37,985 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:37,986 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:37,988 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:37,988 even if it does not contain any `.py` files. 2026-03-13T22:09:37,989 On the other hand, currently there is no concept of package data 2026-03-13T22:09:37,990 directory, all directories are treated like packages. 2026-03-13T22:09:37,990 ******************************************************************************** 2026-03-13T22:09:37,992 !! 2026-03-13T22:09:37,992 check.warn(importable) 2026-03-13T22:09:37,992 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is absent from the `packages` configuration. 2026-03-13T22:09:37,993 !! 2026-03-13T22:09:37,993 ******************************************************************************** 2026-03-13T22:09:37,994 ############################ 2026-03-13T22:09:37,994 # Package would be ignored # 2026-03-13T22:09:37,995 ############################ 2026-03-13T22:09:37,995 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' as an importable package[^1], 2026-03-13T22:09:37,995 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:37,996 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:37,997 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' is explicitly added 2026-03-13T22:09:37,997 to the `packages` configuration field. 2026-03-13T22:09:37,998 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:37,998 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:37,999 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:37,999 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,000 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,001 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' to be distributed and are 2026-03-13T22:09:38,002 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.pistol.clusters' via 2026-03-13T22:09:38,002 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,003 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,004 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,004 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,006 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,007 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,008 even if it does not contain any `.py` files. 2026-03-13T22:09:38,008 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,009 directory, all directories are treated like packages. 2026-03-13T22:09:38,009 ******************************************************************************** 2026-03-13T22:09:38,010 !! 2026-03-13T22:09:38,011 check.warn(importable) 2026-03-13T22:09:38,011 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is absent from the `packages` configuration. 2026-03-13T22:09:38,012 !! 2026-03-13T22:09:38,013 ******************************************************************************** 2026-03-13T22:09:38,013 ############################ 2026-03-13T22:09:38,014 # Package would be ignored # 2026-03-13T22:09:38,014 ############################ 2026-03-13T22:09:38,015 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_data.ways' as an importable package[^1], 2026-03-13T22:09:38,015 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,016 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,017 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_data.ways' is explicitly added 2026-03-13T22:09:38,018 to the `packages` configuration field. 2026-03-13T22:09:38,018 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,019 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,019 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,020 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,021 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,021 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_data.ways' to be distributed and are 2026-03-13T22:09:38,022 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_data.ways' via 2026-03-13T22:09:38,022 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,022 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,023 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,024 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,024 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,025 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,026 even if it does not contain any `.py` files. 2026-03-13T22:09:38,026 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,027 directory, all directories are treated like packages. 2026-03-13T22:09:38,027 ******************************************************************************** 2026-03-13T22:09:38,028 !! 2026-03-13T22:09:38,029 check.warn(importable) 2026-03-13T22:09:38,030 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_calc_rmsd.test_output' is absent from the `packages` configuration. 2026-03-13T22:09:38,030 !! 2026-03-13T22:09:38,031 ******************************************************************************** 2026-03-13T22:09:38,032 ############################ 2026-03-13T22:09:38,032 # Package would be ignored # 2026-03-13T22:09:38,033 ############################ 2026-03-13T22:09:38,033 Python recognizes 'rna_tools.tools.rna_calc_rmsd.test_output' as an importable package[^1], 2026-03-13T22:09:38,034 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,035 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,036 package, please make sure that 'rna_tools.tools.rna_calc_rmsd.test_output' is explicitly added 2026-03-13T22:09:38,036 to the `packages` configuration field. 2026-03-13T22:09:38,037 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,038 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,038 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,039 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,040 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,042 If you don't want 'rna_tools.tools.rna_calc_rmsd.test_output' to be distributed and are 2026-03-13T22:09:38,042 already explicitly excluding 'rna_tools.tools.rna_calc_rmsd.test_output' via 2026-03-13T22:09:38,043 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,043 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,044 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,045 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,045 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,046 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,047 even if it does not contain any `.py` files. 2026-03-13T22:09:38,047 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,047 directory, all directories are treated like packages. 2026-03-13T22:09:38,048 ******************************************************************************** 2026-03-13T22:09:38,048 !! 2026-03-13T22:09:38,049 check.warn(importable) 2026-03-13T22:09:38,049 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is absent from the `packages` configuration. 2026-03-13T22:09:38,050 !! 2026-03-13T22:09:38,050 ******************************************************************************** 2026-03-13T22:09:38,051 ############################ 2026-03-13T22:09:38,051 # Package would be ignored # 2026-03-13T22:09:38,051 ############################ 2026-03-13T22:09:38,052 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' as an importable package[^1], 2026-03-13T22:09:38,052 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,053 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,054 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' is explicitly added 2026-03-13T22:09:38,054 to the `packages` configuration field. 2026-03-13T22:09:38,056 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,056 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,057 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,058 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,059 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,060 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' to be distributed and are 2026-03-13T22:09:38,061 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.doc' via 2026-03-13T22:09:38,061 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,062 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,062 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,063 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,064 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,065 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,066 even if it does not contain any `.py` files. 2026-03-13T22:09:38,066 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,067 directory, all directories are treated like packages. 2026-03-13T22:09:38,067 ******************************************************************************** 2026-03-13T22:09:38,069 !! 2026-03-13T22:09:38,069 check.warn(importable) 2026-03-13T22:09:38,070 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,070 !! 2026-03-13T22:09:38,071 ******************************************************************************** 2026-03-13T22:09:38,072 ############################ 2026-03-13T22:09:38,072 # Package would be ignored # 2026-03-13T22:09:38,072 ############################ 2026-03-13T22:09:38,073 Python recognizes 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' as an importable package[^1], 2026-03-13T22:09:38,073 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,074 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,074 package, please make sure that 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' is explicitly added 2026-03-13T22:09:38,075 to the `packages` configuration field. 2026-03-13T22:09:38,075 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,076 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,076 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,077 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,078 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,079 If you don't want 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' to be distributed and are 2026-03-13T22:09:38,079 already explicitly excluding 'rna_tools.tools.rna_convert_pseudoknot_formats.test_data' via 2026-03-13T22:09:38,080 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,080 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,080 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,081 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,082 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,084 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,084 even if it does not contain any `.py` files. 2026-03-13T22:09:38,085 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,085 directory, all directories are treated like packages. 2026-03-13T22:09:38,086 ******************************************************************************** 2026-03-13T22:09:38,087 !! 2026-03-13T22:09:38,087 check.warn(importable) 2026-03-13T22:09:38,088 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_filter.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,088 !! 2026-03-13T22:09:38,089 ******************************************************************************** 2026-03-13T22:09:38,090 ############################ 2026-03-13T22:09:38,090 # Package would be ignored # 2026-03-13T22:09:38,091 ############################ 2026-03-13T22:09:38,091 Python recognizes 'rna_tools.tools.rna_filter.test_data' as an importable package[^1], 2026-03-13T22:09:38,092 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,093 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,094 package, please make sure that 'rna_tools.tools.rna_filter.test_data' is explicitly added 2026-03-13T22:09:38,094 to the `packages` configuration field. 2026-03-13T22:09:38,095 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,096 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,096 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,097 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,098 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,099 If you don't want 'rna_tools.tools.rna_filter.test_data' to be distributed and are 2026-03-13T22:09:38,099 already explicitly excluding 'rna_tools.tools.rna_filter.test_data' via 2026-03-13T22:09:38,099 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,100 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,100 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,101 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,102 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,103 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,103 even if it does not contain any `.py` files. 2026-03-13T22:09:38,104 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,104 directory, all directories are treated like packages. 2026-03-13T22:09:38,104 ******************************************************************************** 2026-03-13T22:09:38,105 !! 2026-03-13T22:09:38,106 check.warn(importable) 2026-03-13T22:09:38,107 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_get_restraints' is absent from the `packages` configuration. 2026-03-13T22:09:38,107 !! 2026-03-13T22:09:38,108 ******************************************************************************** 2026-03-13T22:09:38,109 ############################ 2026-03-13T22:09:38,110 # Package would be ignored # 2026-03-13T22:09:38,110 ############################ 2026-03-13T22:09:38,111 Python recognizes 'rna_tools.tools.rna_get_restraints' as an importable package[^1], 2026-03-13T22:09:38,111 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,112 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,113 package, please make sure that 'rna_tools.tools.rna_get_restraints' is explicitly added 2026-03-13T22:09:38,114 to the `packages` configuration field. 2026-03-13T22:09:38,115 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,115 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,115 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,116 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,117 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,118 If you don't want 'rna_tools.tools.rna_get_restraints' to be distributed and are 2026-03-13T22:09:38,119 already explicitly excluding 'rna_tools.tools.rna_get_restraints' via 2026-03-13T22:09:38,119 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,120 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,120 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,121 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,123 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,124 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,125 even if it does not contain any `.py` files. 2026-03-13T22:09:38,125 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,125 directory, all directories are treated like packages. 2026-03-13T22:09:38,126 ******************************************************************************** 2026-03-13T22:09:38,126 !! 2026-03-13T22:09:38,127 check.warn(importable) 2026-03-13T22:09:38,127 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.doc' is absent from the `packages` configuration. 2026-03-13T22:09:38,128 !! 2026-03-13T22:09:38,128 ******************************************************************************** 2026-03-13T22:09:38,129 ############################ 2026-03-13T22:09:38,129 # Package would be ignored # 2026-03-13T22:09:38,130 ############################ 2026-03-13T22:09:38,130 Python recognizes 'rna_tools.tools.rna_helix_vis.doc' as an importable package[^1], 2026-03-13T22:09:38,131 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,132 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,132 package, please make sure that 'rna_tools.tools.rna_helix_vis.doc' is explicitly added 2026-03-13T22:09:38,133 to the `packages` configuration field. 2026-03-13T22:09:38,134 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,134 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,135 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,136 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,137 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,139 If you don't want 'rna_tools.tools.rna_helix_vis.doc' to be distributed and are 2026-03-13T22:09:38,139 already explicitly excluding 'rna_tools.tools.rna_helix_vis.doc' via 2026-03-13T22:09:38,140 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,141 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,141 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,143 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,144 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,146 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,146 even if it does not contain any `.py` files. 2026-03-13T22:09:38,147 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,147 directory, all directories are treated like packages. 2026-03-13T22:09:38,148 ******************************************************************************** 2026-03-13T22:09:38,149 !! 2026-03-13T22:09:38,149 check.warn(importable) 2026-03-13T22:09:38,150 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_helix_vis.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,151 !! 2026-03-13T22:09:38,152 ******************************************************************************** 2026-03-13T22:09:38,153 ############################ 2026-03-13T22:09:38,153 # Package would be ignored # 2026-03-13T22:09:38,154 ############################ 2026-03-13T22:09:38,155 Python recognizes 'rna_tools.tools.rna_helix_vis.test_data' as an importable package[^1], 2026-03-13T22:09:38,155 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,156 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,157 package, please make sure that 'rna_tools.tools.rna_helix_vis.test_data' is explicitly added 2026-03-13T22:09:38,157 to the `packages` configuration field. 2026-03-13T22:09:38,158 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,159 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,159 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,160 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,161 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,162 If you don't want 'rna_tools.tools.rna_helix_vis.test_data' to be distributed and are 2026-03-13T22:09:38,163 already explicitly excluding 'rna_tools.tools.rna_helix_vis.test_data' via 2026-03-13T22:09:38,163 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,164 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,164 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,165 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,167 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,169 even if it does not contain any `.py` files. 2026-03-13T22:09:38,170 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,171 directory, all directories are treated like packages. 2026-03-13T22:09:38,171 ******************************************************************************** 2026-03-13T22:09:38,173 !! 2026-03-13T22:09:38,173 check.warn(importable) 2026-03-13T22:09:38,174 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels' is absent from the `packages` configuration. 2026-03-13T22:09:38,174 !! 2026-03-13T22:09:38,176 ******************************************************************************** 2026-03-13T22:09:38,176 ############################ 2026-03-13T22:09:38,177 # Package would be ignored # 2026-03-13T22:09:38,178 ############################ 2026-03-13T22:09:38,178 Python recognizes 'rna_tools.tools.rna_multimodels' as an importable package[^1], 2026-03-13T22:09:38,179 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,180 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,181 package, please make sure that 'rna_tools.tools.rna_multimodels' is explicitly added 2026-03-13T22:09:38,181 to the `packages` configuration field. 2026-03-13T22:09:38,182 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,183 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,183 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,185 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,186 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,187 If you don't want 'rna_tools.tools.rna_multimodels' to be distributed and are 2026-03-13T22:09:38,188 already explicitly excluding 'rna_tools.tools.rna_multimodels' via 2026-03-13T22:09:38,189 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,189 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,190 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,191 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,192 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,194 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,194 even if it does not contain any `.py` files. 2026-03-13T22:09:38,195 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,195 directory, all directories are treated like packages. 2026-03-13T22:09:38,196 ******************************************************************************** 2026-03-13T22:09:38,197 !! 2026-03-13T22:09:38,197 check.warn(importable) 2026-03-13T22:09:38,198 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.data' is absent from the `packages` configuration. 2026-03-13T22:09:38,198 !! 2026-03-13T22:09:38,199 ******************************************************************************** 2026-03-13T22:09:38,200 ############################ 2026-03-13T22:09:38,200 # Package would be ignored # 2026-03-13T22:09:38,201 ############################ 2026-03-13T22:09:38,202 Python recognizes 'rna_tools.tools.rna_multimodels.data' as an importable package[^1], 2026-03-13T22:09:38,202 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,204 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,204 package, please make sure that 'rna_tools.tools.rna_multimodels.data' is explicitly added 2026-03-13T22:09:38,205 to the `packages` configuration field. 2026-03-13T22:09:38,206 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,207 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,207 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,209 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,210 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,211 If you don't want 'rna_tools.tools.rna_multimodels.data' to be distributed and are 2026-03-13T22:09:38,212 already explicitly excluding 'rna_tools.tools.rna_multimodels.data' via 2026-03-13T22:09:38,213 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,213 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,214 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,215 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,216 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,218 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,219 even if it does not contain any `.py` files. 2026-03-13T22:09:38,219 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,220 directory, all directories are treated like packages. 2026-03-13T22:09:38,221 ******************************************************************************** 2026-03-13T22:09:38,222 !! 2026-03-13T22:09:38,223 check.warn(importable) 2026-03-13T22:09:38,223 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_in' is absent from the `packages` configuration. 2026-03-13T22:09:38,224 !! 2026-03-13T22:09:38,225 ******************************************************************************** 2026-03-13T22:09:38,225 ############################ 2026-03-13T22:09:38,225 # Package would be ignored # 2026-03-13T22:09:38,226 ############################ 2026-03-13T22:09:38,226 Python recognizes 'rna_tools.tools.rna_multimodels.test_in' as an importable package[^1], 2026-03-13T22:09:38,227 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,228 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,228 package, please make sure that 'rna_tools.tools.rna_multimodels.test_in' is explicitly added 2026-03-13T22:09:38,229 to the `packages` configuration field. 2026-03-13T22:09:38,230 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,230 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,231 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,232 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,232 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,233 If you don't want 'rna_tools.tools.rna_multimodels.test_in' to be distributed and are 2026-03-13T22:09:38,234 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_in' via 2026-03-13T22:09:38,234 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,234 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,235 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,236 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,236 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,238 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,238 even if it does not contain any `.py` files. 2026-03-13T22:09:38,239 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,240 directory, all directories are treated like packages. 2026-03-13T22:09:38,240 ******************************************************************************** 2026-03-13T22:09:38,241 !! 2026-03-13T22:09:38,241 check.warn(importable) 2026-03-13T22:09:38,242 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_multimodels.test_out' is absent from the `packages` configuration. 2026-03-13T22:09:38,242 !! 2026-03-13T22:09:38,243 ******************************************************************************** 2026-03-13T22:09:38,244 ############################ 2026-03-13T22:09:38,244 # Package would be ignored # 2026-03-13T22:09:38,245 ############################ 2026-03-13T22:09:38,245 Python recognizes 'rna_tools.tools.rna_multimodels.test_out' as an importable package[^1], 2026-03-13T22:09:38,246 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,247 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,247 package, please make sure that 'rna_tools.tools.rna_multimodels.test_out' is explicitly added 2026-03-13T22:09:38,248 to the `packages` configuration field. 2026-03-13T22:09:38,249 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,249 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,250 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,251 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,251 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,252 If you don't want 'rna_tools.tools.rna_multimodels.test_out' to be distributed and are 2026-03-13T22:09:38,252 already explicitly excluding 'rna_tools.tools.rna_multimodels.test_out' via 2026-03-13T22:09:38,253 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,253 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,253 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,254 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,255 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,256 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,256 even if it does not contain any `.py` files. 2026-03-13T22:09:38,257 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,257 directory, all directories are treated like packages. 2026-03-13T22:09:38,258 ******************************************************************************** 2026-03-13T22:09:38,259 !! 2026-03-13T22:09:38,259 check.warn(importable) 2026-03-13T22:09:38,260 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,261 !! 2026-03-13T22:09:38,262 ******************************************************************************** 2026-03-13T22:09:38,262 ############################ 2026-03-13T22:09:38,263 # Package would be ignored # 2026-03-13T22:09:38,263 ############################ 2026-03-13T22:09:38,264 Python recognizes 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' as an importable package[^1], 2026-03-13T22:09:38,264 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,265 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,266 package, please make sure that 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' is explicitly added 2026-03-13T22:09:38,266 to the `packages` configuration field. 2026-03-13T22:09:38,267 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,268 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,268 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,269 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,270 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,272 If you don't want 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' to be distributed and are 2026-03-13T22:09:38,272 already explicitly excluding 'rna_tools.tools.rna_pdb_edit_occupancy_bfactor.test_data' via 2026-03-13T22:09:38,273 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,273 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,274 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,275 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,276 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,277 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,277 even if it does not contain any `.py` files. 2026-03-13T22:09:38,278 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,278 directory, all directories are treated like packages. 2026-03-13T22:09:38,278 ******************************************************************************** 2026-03-13T22:09:38,279 !! 2026-03-13T22:09:38,280 check.warn(importable) 2026-03-13T22:09:38,280 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,280 !! 2026-03-13T22:09:38,281 ******************************************************************************** 2026-03-13T22:09:38,282 ############################ 2026-03-13T22:09:38,282 # Package would be ignored # 2026-03-13T22:09:38,282 ############################ 2026-03-13T22:09:38,283 Python recognizes 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' as an importable package[^1], 2026-03-13T22:09:38,283 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,284 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,284 package, please make sure that 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' is explicitly added 2026-03-13T22:09:38,285 to the `packages` configuration field. 2026-03-13T22:09:38,286 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,287 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,287 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,289 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,290 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,291 If you don't want 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' to be distributed and are 2026-03-13T22:09:38,291 already explicitly excluding 'rna_tools.tools.rna_pdb_merge_structure_with_fragments.test_data' via 2026-03-13T22:09:38,292 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,292 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,293 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,294 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,295 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,296 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,297 even if it does not contain any `.py` files. 2026-03-13T22:09:38,297 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,298 directory, all directories are treated like packages. 2026-03-13T22:09:38,298 ******************************************************************************** 2026-03-13T22:09:38,299 !! 2026-03-13T22:09:38,300 check.warn(importable) 2026-03-13T22:09:38,301 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_prediction_significance.opt' is absent from the `packages` configuration. 2026-03-13T22:09:38,301 !! 2026-03-13T22:09:38,302 ******************************************************************************** 2026-03-13T22:09:38,303 ############################ 2026-03-13T22:09:38,303 # Package would be ignored # 2026-03-13T22:09:38,304 ############################ 2026-03-13T22:09:38,304 Python recognizes 'rna_tools.tools.rna_prediction_significance.opt' as an importable package[^1], 2026-03-13T22:09:38,304 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,305 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,305 package, please make sure that 'rna_tools.tools.rna_prediction_significance.opt' is explicitly added 2026-03-13T22:09:38,306 to the `packages` configuration field. 2026-03-13T22:09:38,306 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,307 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,307 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,308 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,309 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,310 If you don't want 'rna_tools.tools.rna_prediction_significance.opt' to be distributed and are 2026-03-13T22:09:38,310 already explicitly excluding 'rna_tools.tools.rna_prediction_significance.opt' via 2026-03-13T22:09:38,311 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,311 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,312 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,313 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,314 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,315 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,316 even if it does not contain any `.py` files. 2026-03-13T22:09:38,317 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,317 directory, all directories are treated like packages. 2026-03-13T22:09:38,318 ******************************************************************************** 2026-03-13T22:09:38,319 !! 2026-03-13T22:09:38,319 check.warn(importable) 2026-03-13T22:09:38,320 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_refinement.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,320 !! 2026-03-13T22:09:38,321 ******************************************************************************** 2026-03-13T22:09:38,321 ############################ 2026-03-13T22:09:38,322 # Package would be ignored # 2026-03-13T22:09:38,322 ############################ 2026-03-13T22:09:38,323 Python recognizes 'rna_tools.tools.rna_refinement.test_data' as an importable package[^1], 2026-03-13T22:09:38,323 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,324 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,325 package, please make sure that 'rna_tools.tools.rna_refinement.test_data' is explicitly added 2026-03-13T22:09:38,325 to the `packages` configuration field. 2026-03-13T22:09:38,326 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,326 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,327 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,328 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,329 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,329 If you don't want 'rna_tools.tools.rna_refinement.test_data' to be distributed and are 2026-03-13T22:09:38,330 already explicitly excluding 'rna_tools.tools.rna_refinement.test_data' via 2026-03-13T22:09:38,330 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,330 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,331 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,331 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,332 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,333 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,334 even if it does not contain any `.py` files. 2026-03-13T22:09:38,334 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,335 directory, all directories are treated like packages. 2026-03-13T22:09:38,335 ******************************************************************************** 2026-03-13T22:09:38,336 !! 2026-03-13T22:09:38,336 check.warn(importable) 2026-03-13T22:09:38,337 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rfam' is absent from the `packages` configuration. 2026-03-13T22:09:38,337 !! 2026-03-13T22:09:38,338 ******************************************************************************** 2026-03-13T22:09:38,339 ############################ 2026-03-13T22:09:38,340 # Package would be ignored # 2026-03-13T22:09:38,340 ############################ 2026-03-13T22:09:38,341 Python recognizes 'rna_tools.tools.rna_rfam' as an importable package[^1], 2026-03-13T22:09:38,341 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,343 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,343 package, please make sure that 'rna_tools.tools.rna_rfam' is explicitly added 2026-03-13T22:09:38,344 to the `packages` configuration field. 2026-03-13T22:09:38,345 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,346 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,346 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,347 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,348 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,349 If you don't want 'rna_tools.tools.rna_rfam' to be distributed and are 2026-03-13T22:09:38,349 already explicitly excluding 'rna_tools.tools.rna_rfam' via 2026-03-13T22:09:38,350 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,350 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,351 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,352 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,353 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,355 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,355 even if it does not contain any `.py` files. 2026-03-13T22:09:38,355 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,356 directory, all directories are treated like packages. 2026-03-13T22:09:38,356 ******************************************************************************** 2026-03-13T22:09:38,357 !! 2026-03-13T22:09:38,357 check.warn(importable) 2026-03-13T22:09:38,357 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,358 !! 2026-03-13T22:09:38,359 ******************************************************************************** 2026-03-13T22:09:38,359 ############################ 2026-03-13T22:09:38,359 # Package would be ignored # 2026-03-13T22:09:38,360 ############################ 2026-03-13T22:09:38,360 Python recognizes 'rna_tools.tools.rna_rosetta.test_data' as an importable package[^1], 2026-03-13T22:09:38,361 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,361 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,362 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data' is explicitly added 2026-03-13T22:09:38,362 to the `packages` configuration field. 2026-03-13T22:09:38,363 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,363 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,364 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,365 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,366 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,367 If you don't want 'rna_tools.tools.rna_rosetta.test_data' to be distributed and are 2026-03-13T22:09:38,368 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data' via 2026-03-13T22:09:38,368 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,369 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,369 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,371 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,372 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,373 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,373 even if it does not contain any `.py` files. 2026-03-13T22:09:38,374 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,374 directory, all directories are treated like packages. 2026-03-13T22:09:38,375 ******************************************************************************** 2026-03-13T22:09:38,376 !! 2026-03-13T22:09:38,376 check.warn(importable) 2026-03-13T22:09:38,377 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_rosetta.test_data.tl' is absent from the `packages` configuration. 2026-03-13T22:09:38,377 !! 2026-03-13T22:09:38,378 ******************************************************************************** 2026-03-13T22:09:38,379 ############################ 2026-03-13T22:09:38,380 # Package would be ignored # 2026-03-13T22:09:38,380 ############################ 2026-03-13T22:09:38,381 Python recognizes 'rna_tools.tools.rna_rosetta.test_data.tl' as an importable package[^1], 2026-03-13T22:09:38,382 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,382 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,383 package, please make sure that 'rna_tools.tools.rna_rosetta.test_data.tl' is explicitly added 2026-03-13T22:09:38,383 to the `packages` configuration field. 2026-03-13T22:09:38,384 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,384 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,385 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,385 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,386 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,387 If you don't want 'rna_tools.tools.rna_rosetta.test_data.tl' to be distributed and are 2026-03-13T22:09:38,387 already explicitly excluding 'rna_tools.tools.rna_rosetta.test_data.tl' via 2026-03-13T22:09:38,388 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,388 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,388 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,389 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,390 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,392 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,392 even if it does not contain any `.py` files. 2026-03-13T22:09:38,393 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,393 directory, all directories are treated like packages. 2026-03-13T22:09:38,394 ******************************************************************************** 2026-03-13T22:09:38,395 !! 2026-03-13T22:09:38,395 check.warn(importable) 2026-03-13T22:09:38,396 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_sali2dotbracket.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,397 !! 2026-03-13T22:09:38,398 ******************************************************************************** 2026-03-13T22:09:38,399 ############################ 2026-03-13T22:09:38,399 # Package would be ignored # 2026-03-13T22:09:38,400 ############################ 2026-03-13T22:09:38,400 Python recognizes 'rna_tools.tools.rna_sali2dotbracket.test_data' as an importable package[^1], 2026-03-13T22:09:38,401 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,402 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,402 package, please make sure that 'rna_tools.tools.rna_sali2dotbracket.test_data' is explicitly added 2026-03-13T22:09:38,403 to the `packages` configuration field. 2026-03-13T22:09:38,404 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,404 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,405 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,406 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,407 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,408 If you don't want 'rna_tools.tools.rna_sali2dotbracket.test_data' to be distributed and are 2026-03-13T22:09:38,409 already explicitly excluding 'rna_tools.tools.rna_sali2dotbracket.test_data' via 2026-03-13T22:09:38,409 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,410 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,410 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,411 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,411 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,413 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,413 even if it does not contain any `.py` files. 2026-03-13T22:09:38,413 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,414 directory, all directories are treated like packages. 2026-03-13T22:09:38,414 ******************************************************************************** 2026-03-13T22:09:38,415 !! 2026-03-13T22:09:38,416 check.warn(importable) 2026-03-13T22:09:38,416 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_seq_identity' is absent from the `packages` configuration. 2026-03-13T22:09:38,417 !! 2026-03-13T22:09:38,417 ******************************************************************************** 2026-03-13T22:09:38,418 ############################ 2026-03-13T22:09:38,418 # Package would be ignored # 2026-03-13T22:09:38,419 ############################ 2026-03-13T22:09:38,420 Python recognizes 'rna_tools.tools.rna_seq_identity' as an importable package[^1], 2026-03-13T22:09:38,420 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,421 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,422 package, please make sure that 'rna_tools.tools.rna_seq_identity' is explicitly added 2026-03-13T22:09:38,422 to the `packages` configuration field. 2026-03-13T22:09:38,424 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,424 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,425 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,426 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,427 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,428 If you don't want 'rna_tools.tools.rna_seq_identity' to be distributed and are 2026-03-13T22:09:38,429 already explicitly excluding 'rna_tools.tools.rna_seq_identity' via 2026-03-13T22:09:38,429 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,430 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,430 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,431 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,432 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,434 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,434 even if it does not contain any `.py` files. 2026-03-13T22:09:38,435 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,435 directory, all directories are treated like packages. 2026-03-13T22:09:38,436 ******************************************************************************** 2026-03-13T22:09:38,438 !! 2026-03-13T22:09:38,438 check.warn(importable) 2026-03-13T22:09:38,438 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rna_x3dna.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,439 !! 2026-03-13T22:09:38,440 ******************************************************************************** 2026-03-13T22:09:38,440 ############################ 2026-03-13T22:09:38,440 # Package would be ignored # 2026-03-13T22:09:38,441 ############################ 2026-03-13T22:09:38,441 Python recognizes 'rna_tools.tools.rna_x3dna.test_data' as an importable package[^1], 2026-03-13T22:09:38,442 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,442 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,443 package, please make sure that 'rna_tools.tools.rna_x3dna.test_data' is explicitly added 2026-03-13T22:09:38,443 to the `packages` configuration field. 2026-03-13T22:09:38,444 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,444 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,445 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,445 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,446 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,447 If you don't want 'rna_tools.tools.rna_x3dna.test_data' to be distributed and are 2026-03-13T22:09:38,448 already explicitly excluding 'rna_tools.tools.rna_x3dna.test_data' via 2026-03-13T22:09:38,448 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,449 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,450 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,451 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,452 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,453 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,454 even if it does not contain any `.py` files. 2026-03-13T22:09:38,455 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,455 directory, all directories are treated like packages. 2026-03-13T22:09:38,456 ******************************************************************************** 2026-03-13T22:09:38,457 !! 2026-03-13T22:09:38,457 check.warn(importable) 2026-03-13T22:09:38,458 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender' is absent from the `packages` configuration. 2026-03-13T22:09:38,458 !! 2026-03-13T22:09:38,459 ******************************************************************************** 2026-03-13T22:09:38,460 ############################ 2026-03-13T22:09:38,460 # Package would be ignored # 2026-03-13T22:09:38,461 ############################ 2026-03-13T22:09:38,461 Python recognizes 'rna_tools.tools.rnapuzzle_sender' as an importable package[^1], 2026-03-13T22:09:38,462 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,463 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,463 package, please make sure that 'rna_tools.tools.rnapuzzle_sender' is explicitly added 2026-03-13T22:09:38,464 to the `packages` configuration field. 2026-03-13T22:09:38,465 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,465 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,465 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,466 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,467 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,468 If you don't want 'rna_tools.tools.rnapuzzle_sender' to be distributed and are 2026-03-13T22:09:38,468 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender' via 2026-03-13T22:09:38,468 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,469 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,469 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,470 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,470 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,472 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,472 even if it does not contain any `.py` files. 2026-03-13T22:09:38,472 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,473 directory, all directories are treated like packages. 2026-03-13T22:09:38,473 ******************************************************************************** 2026-03-13T22:09:38,474 !! 2026-03-13T22:09:38,475 check.warn(importable) 2026-03-13T22:09:38,476 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.files' is absent from the `packages` configuration. 2026-03-13T22:09:38,476 !! 2026-03-13T22:09:38,477 ******************************************************************************** 2026-03-13T22:09:38,478 ############################ 2026-03-13T22:09:38,479 # Package would be ignored # 2026-03-13T22:09:38,479 ############################ 2026-03-13T22:09:38,480 Python recognizes 'rna_tools.tools.rnapuzzle_sender.files' as an importable package[^1], 2026-03-13T22:09:38,480 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,481 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,482 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.files' is explicitly added 2026-03-13T22:09:38,483 to the `packages` configuration field. 2026-03-13T22:09:38,484 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,485 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,485 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,486 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,487 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,488 If you don't want 'rna_tools.tools.rnapuzzle_sender.files' to be distributed and are 2026-03-13T22:09:38,489 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.files' via 2026-03-13T22:09:38,489 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,490 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,490 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,491 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,493 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,494 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,494 even if it does not contain any `.py` files. 2026-03-13T22:09:38,495 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,495 directory, all directories are treated like packages. 2026-03-13T22:09:38,496 ******************************************************************************** 2026-03-13T22:09:38,496 !! 2026-03-13T22:09:38,497 check.warn(importable) 2026-03-13T22:09:38,497 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is absent from the `packages` configuration. 2026-03-13T22:09:38,498 !! 2026-03-13T22:09:38,498 ******************************************************************************** 2026-03-13T22:09:38,499 ############################ 2026-03-13T22:09:38,499 # Package would be ignored # 2026-03-13T22:09:38,499 ############################ 2026-03-13T22:09:38,500 Python recognizes 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' as an importable package[^1], 2026-03-13T22:09:38,500 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,501 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,501 package, please make sure that 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' is explicitly added 2026-03-13T22:09:38,502 to the `packages` configuration field. 2026-03-13T22:09:38,503 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,504 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,504 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,505 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,507 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,508 If you don't want 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' to be distributed and are 2026-03-13T22:09:38,508 already explicitly excluding 'rna_tools.tools.rnapuzzle_sender.test_of_email_content' via 2026-03-13T22:09:38,509 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,509 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,510 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,511 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,512 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,513 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,514 even if it does not contain any `.py` files. 2026-03-13T22:09:38,514 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,515 directory, all directories are treated like packages. 2026-03-13T22:09:38,515 ******************************************************************************** 2026-03-13T22:09:38,516 !! 2026-03-13T22:09:38,517 check.warn(importable) 2026-03-13T22:09:38,517 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii' is absent from the `packages` configuration. 2026-03-13T22:09:38,518 !! 2026-03-13T22:09:38,519 ******************************************************************************** 2026-03-13T22:09:38,520 ############################ 2026-03-13T22:09:38,520 # Package would be ignored # 2026-03-13T22:09:38,521 ############################ 2026-03-13T22:09:38,521 Python recognizes 'rna_tools.tools.rnashape2ascii' as an importable package[^1], 2026-03-13T22:09:38,521 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,522 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,522 package, please make sure that 'rna_tools.tools.rnashape2ascii' is explicitly added 2026-03-13T22:09:38,523 to the `packages` configuration field. 2026-03-13T22:09:38,523 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,524 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,524 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,525 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,526 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,526 If you don't want 'rna_tools.tools.rnashape2ascii' to be distributed and are 2026-03-13T22:09:38,527 already explicitly excluding 'rna_tools.tools.rnashape2ascii' via 2026-03-13T22:09:38,527 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,527 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,528 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,529 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,530 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,531 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,532 even if it does not contain any `.py` files. 2026-03-13T22:09:38,533 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,533 directory, all directories are treated like packages. 2026-03-13T22:09:38,534 ******************************************************************************** 2026-03-13T22:09:38,535 !! 2026-03-13T22:09:38,535 check.warn(importable) 2026-03-13T22:09:38,536 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.rnashape2ascii.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,536 !! 2026-03-13T22:09:38,537 ******************************************************************************** 2026-03-13T22:09:38,538 ############################ 2026-03-13T22:09:38,538 # Package would be ignored # 2026-03-13T22:09:38,538 ############################ 2026-03-13T22:09:38,539 Python recognizes 'rna_tools.tools.rnashape2ascii.test_data' as an importable package[^1], 2026-03-13T22:09:38,539 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,540 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,541 package, please make sure that 'rna_tools.tools.rnashape2ascii.test_data' is explicitly added 2026-03-13T22:09:38,541 to the `packages` configuration field. 2026-03-13T22:09:38,542 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,543 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,543 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,544 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,546 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,546 If you don't want 'rna_tools.tools.rnashape2ascii.test_data' to be distributed and are 2026-03-13T22:09:38,547 already explicitly excluding 'rna_tools.tools.rnashape2ascii.test_data' via 2026-03-13T22:09:38,547 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,547 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,548 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,548 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,549 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,550 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,551 even if it does not contain any `.py` files. 2026-03-13T22:09:38,551 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,551 directory, all directories are treated like packages. 2026-03-13T22:09:38,552 ******************************************************************************** 2026-03-13T22:09:38,553 !! 2026-03-13T22:09:38,553 check.warn(importable) 2026-03-13T22:09:38,553 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare' is absent from the `packages` configuration. 2026-03-13T22:09:38,554 !! 2026-03-13T22:09:38,555 ******************************************************************************** 2026-03-13T22:09:38,555 ############################ 2026-03-13T22:09:38,555 # Package would be ignored # 2026-03-13T22:09:38,556 ############################ 2026-03-13T22:09:38,556 Python recognizes 'rna_tools.tools.sandbox.rna_compare' as an importable package[^1], 2026-03-13T22:09:38,556 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,557 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,558 package, please make sure that 'rna_tools.tools.sandbox.rna_compare' is explicitly added 2026-03-13T22:09:38,558 to the `packages` configuration field. 2026-03-13T22:09:38,559 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,560 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,560 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,561 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,562 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,563 If you don't want 'rna_tools.tools.sandbox.rna_compare' to be distributed and are 2026-03-13T22:09:38,564 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare' via 2026-03-13T22:09:38,564 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,565 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,565 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,566 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,567 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,569 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,569 even if it does not contain any `.py` files. 2026-03-13T22:09:38,570 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,571 directory, all directories are treated like packages. 2026-03-13T22:09:38,571 ******************************************************************************** 2026-03-13T22:09:38,572 !! 2026-03-13T22:09:38,572 check.warn(importable) 2026-03-13T22:09:38,573 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.sandbox.rna_compare.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,573 !! 2026-03-13T22:09:38,574 ******************************************************************************** 2026-03-13T22:09:38,574 ############################ 2026-03-13T22:09:38,575 # Package would be ignored # 2026-03-13T22:09:38,575 ############################ 2026-03-13T22:09:38,575 Python recognizes 'rna_tools.tools.sandbox.rna_compare.test_data' as an importable package[^1], 2026-03-13T22:09:38,576 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,576 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,577 package, please make sure that 'rna_tools.tools.sandbox.rna_compare.test_data' is explicitly added 2026-03-13T22:09:38,577 to the `packages` configuration field. 2026-03-13T22:09:38,578 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,578 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,579 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,580 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,581 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,582 If you don't want 'rna_tools.tools.sandbox.rna_compare.test_data' to be distributed and are 2026-03-13T22:09:38,582 already explicitly excluding 'rna_tools.tools.sandbox.rna_compare.test_data' via 2026-03-13T22:09:38,582 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,583 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,583 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,584 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,585 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,587 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,587 even if it does not contain any `.py` files. 2026-03-13T22:09:38,588 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,588 directory, all directories are treated like packages. 2026-03-13T22:09:38,589 ******************************************************************************** 2026-03-13T22:09:38,590 !! 2026-03-13T22:09:38,590 check.warn(importable) 2026-03-13T22:09:38,591 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.simrna_trajectory.test_data' is absent from the `packages` configuration. 2026-03-13T22:09:38,591 !! 2026-03-13T22:09:38,592 ******************************************************************************** 2026-03-13T22:09:38,593 ############################ 2026-03-13T22:09:38,593 # Package would be ignored # 2026-03-13T22:09:38,594 ############################ 2026-03-13T22:09:38,594 Python recognizes 'rna_tools.tools.simrna_trajectory.test_data' as an importable package[^1], 2026-03-13T22:09:38,595 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,596 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,597 package, please make sure that 'rna_tools.tools.simrna_trajectory.test_data' is explicitly added 2026-03-13T22:09:38,597 to the `packages` configuration field. 2026-03-13T22:09:38,598 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,598 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,598 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,599 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,600 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,601 If you don't want 'rna_tools.tools.simrna_trajectory.test_data' to be distributed and are 2026-03-13T22:09:38,601 already explicitly excluding 'rna_tools.tools.simrna_trajectory.test_data' via 2026-03-13T22:09:38,601 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,602 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,602 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,603 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,604 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,605 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,605 even if it does not contain any `.py` files. 2026-03-13T22:09:38,606 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,606 directory, all directories are treated like packages. 2026-03-13T22:09:38,607 ******************************************************************************** 2026-03-13T22:09:38,608 !! 2026-03-13T22:09:38,609 check.warn(importable) 2026-03-13T22:09:38,609 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility' is absent from the `packages` configuration. 2026-03-13T22:09:38,610 !! 2026-03-13T22:09:38,611 ******************************************************************************** 2026-03-13T22:09:38,611 ############################ 2026-03-13T22:09:38,612 # Package would be ignored # 2026-03-13T22:09:38,612 ############################ 2026-03-13T22:09:38,613 Python recognizes 'rna_tools.tools.triplexibility' as an importable package[^1], 2026-03-13T22:09:38,614 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,614 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,615 package, please make sure that 'rna_tools.tools.triplexibility' is explicitly added 2026-03-13T22:09:38,615 to the `packages` configuration field. 2026-03-13T22:09:38,617 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,617 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,617 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,618 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,620 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,620 If you don't want 'rna_tools.tools.triplexibility' to be distributed and are 2026-03-13T22:09:38,621 already explicitly excluding 'rna_tools.tools.triplexibility' via 2026-03-13T22:09:38,621 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,622 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,623 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,624 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,624 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,625 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,626 even if it does not contain any `.py` files. 2026-03-13T22:09:38,626 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,626 directory, all directories are treated like packages. 2026-03-13T22:09:38,627 ******************************************************************************** 2026-03-13T22:09:38,627 !! 2026-03-13T22:09:38,628 check.warn(importable) 2026-03-13T22:09:38,628 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.data' is absent from the `packages` configuration. 2026-03-13T22:09:38,628 !! 2026-03-13T22:09:38,629 ******************************************************************************** 2026-03-13T22:09:38,630 ############################ 2026-03-13T22:09:38,630 # Package would be ignored # 2026-03-13T22:09:38,630 ############################ 2026-03-13T22:09:38,631 Python recognizes 'rna_tools.tools.triplexibility.data' as an importable package[^1], 2026-03-13T22:09:38,631 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,632 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,633 package, please make sure that 'rna_tools.tools.triplexibility.data' is explicitly added 2026-03-13T22:09:38,633 to the `packages` configuration field. 2026-03-13T22:09:38,634 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,634 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,635 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,636 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,636 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,637 If you don't want 'rna_tools.tools.triplexibility.data' to be distributed and are 2026-03-13T22:09:38,638 already explicitly excluding 'rna_tools.tools.triplexibility.data' via 2026-03-13T22:09:38,638 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,639 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,639 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,640 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,641 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,642 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,643 even if it does not contain any `.py` files. 2026-03-13T22:09:38,643 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,643 directory, all directories are treated like packages. 2026-03-13T22:09:38,644 ******************************************************************************** 2026-03-13T22:09:38,645 !! 2026-03-13T22:09:38,646 check.warn(importable) 2026-03-13T22:09:38,646 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.triplexibility.db' is absent from the `packages` configuration. 2026-03-13T22:09:38,647 !! 2026-03-13T22:09:38,648 ******************************************************************************** 2026-03-13T22:09:38,648 ############################ 2026-03-13T22:09:38,648 # Package would be ignored # 2026-03-13T22:09:38,649 ############################ 2026-03-13T22:09:38,649 Python recognizes 'rna_tools.tools.triplexibility.db' as an importable package[^1], 2026-03-13T22:09:38,649 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,650 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,650 package, please make sure that 'rna_tools.tools.triplexibility.db' is explicitly added 2026-03-13T22:09:38,651 to the `packages` configuration field. 2026-03-13T22:09:38,651 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,652 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,652 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,653 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,654 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,654 If you don't want 'rna_tools.tools.triplexibility.db' to be distributed and are 2026-03-13T22:09:38,655 already explicitly excluding 'rna_tools.tools.triplexibility.db' via 2026-03-13T22:09:38,655 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,655 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,656 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,657 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,658 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,660 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,660 even if it does not contain any `.py` files. 2026-03-13T22:09:38,661 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,661 directory, all directories are treated like packages. 2026-03-13T22:09:38,662 ******************************************************************************** 2026-03-13T22:09:38,663 !! 2026-03-13T22:09:38,663 check.warn(importable) 2026-03-13T22:09:38,664 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.css' is absent from the `packages` configuration. 2026-03-13T22:09:38,664 !! 2026-03-13T22:09:38,665 ******************************************************************************** 2026-03-13T22:09:38,666 ############################ 2026-03-13T22:09:38,666 # Package would be ignored # 2026-03-13T22:09:38,667 ############################ 2026-03-13T22:09:38,667 Python recognizes 'rna_tools.tools.webserver-engine.admin.css' as an importable package[^1], 2026-03-13T22:09:38,667 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,668 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,669 package, please make sure that 'rna_tools.tools.webserver-engine.admin.css' is explicitly added 2026-03-13T22:09:38,669 to the `packages` configuration field. 2026-03-13T22:09:38,671 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,671 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,672 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,673 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,673 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,674 If you don't want 'rna_tools.tools.webserver-engine.admin.css' to be distributed and are 2026-03-13T22:09:38,674 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.css' via 2026-03-13T22:09:38,675 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,675 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,675 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,676 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,677 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,678 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,678 even if it does not contain any `.py` files. 2026-03-13T22:09:38,678 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,679 directory, all directories are treated like packages. 2026-03-13T22:09:38,679 ******************************************************************************** 2026-03-13T22:09:38,680 !! 2026-03-13T22:09:38,680 check.warn(importable) 2026-03-13T22:09:38,681 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img' is absent from the `packages` configuration. 2026-03-13T22:09:38,681 !! 2026-03-13T22:09:38,682 ******************************************************************************** 2026-03-13T22:09:38,683 ############################ 2026-03-13T22:09:38,683 # Package would be ignored # 2026-03-13T22:09:38,683 ############################ 2026-03-13T22:09:38,684 Python recognizes 'rna_tools.tools.webserver-engine.admin.img' as an importable package[^1], 2026-03-13T22:09:38,684 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,685 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,685 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img' is explicitly added 2026-03-13T22:09:38,686 to the `packages` configuration field. 2026-03-13T22:09:38,687 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,687 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,688 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,689 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,690 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,691 If you don't want 'rna_tools.tools.webserver-engine.admin.img' to be distributed and are 2026-03-13T22:09:38,691 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img' via 2026-03-13T22:09:38,692 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,692 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,692 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,693 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,694 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,696 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,696 even if it does not contain any `.py` files. 2026-03-13T22:09:38,697 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,697 directory, all directories are treated like packages. 2026-03-13T22:09:38,697 ******************************************************************************** 2026-03-13T22:09:38,698 !! 2026-03-13T22:09:38,698 check.warn(importable) 2026-03-13T22:09:38,699 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.img.gis' is absent from the `packages` configuration. 2026-03-13T22:09:38,699 !! 2026-03-13T22:09:38,700 ******************************************************************************** 2026-03-13T22:09:38,701 ############################ 2026-03-13T22:09:38,701 # Package would be ignored # 2026-03-13T22:09:38,702 ############################ 2026-03-13T22:09:38,702 Python recognizes 'rna_tools.tools.webserver-engine.admin.img.gis' as an importable package[^1], 2026-03-13T22:09:38,702 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,703 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,704 package, please make sure that 'rna_tools.tools.webserver-engine.admin.img.gis' is explicitly added 2026-03-13T22:09:38,704 to the `packages` configuration field. 2026-03-13T22:09:38,705 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,706 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,706 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,707 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,709 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,710 If you don't want 'rna_tools.tools.webserver-engine.admin.img.gis' to be distributed and are 2026-03-13T22:09:38,710 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.img.gis' via 2026-03-13T22:09:38,711 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,712 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,712 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,713 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,714 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,715 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,716 even if it does not contain any `.py` files. 2026-03-13T22:09:38,717 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,717 directory, all directories are treated like packages. 2026-03-13T22:09:38,718 ******************************************************************************** 2026-03-13T22:09:38,719 !! 2026-03-13T22:09:38,719 check.warn(importable) 2026-03-13T22:09:38,720 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js' is absent from the `packages` configuration. 2026-03-13T22:09:38,720 !! 2026-03-13T22:09:38,721 ******************************************************************************** 2026-03-13T22:09:38,722 ############################ 2026-03-13T22:09:38,722 # Package would be ignored # 2026-03-13T22:09:38,723 ############################ 2026-03-13T22:09:38,724 Python recognizes 'rna_tools.tools.webserver-engine.admin.js' as an importable package[^1], 2026-03-13T22:09:38,724 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,725 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,725 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js' is explicitly added 2026-03-13T22:09:38,726 to the `packages` configuration field. 2026-03-13T22:09:38,727 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,727 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,727 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,728 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,729 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,730 If you don't want 'rna_tools.tools.webserver-engine.admin.js' to be distributed and are 2026-03-13T22:09:38,730 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js' via 2026-03-13T22:09:38,731 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,731 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,732 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,733 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,734 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,735 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,736 even if it does not contain any `.py` files. 2026-03-13T22:09:38,736 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,737 directory, all directories are treated like packages. 2026-03-13T22:09:38,737 ******************************************************************************** 2026-03-13T22:09:38,738 !! 2026-03-13T22:09:38,739 check.warn(importable) 2026-03-13T22:09:38,740 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.admin.js.admin' is absent from the `packages` configuration. 2026-03-13T22:09:38,740 !! 2026-03-13T22:09:38,741 ******************************************************************************** 2026-03-13T22:09:38,742 ############################ 2026-03-13T22:09:38,743 # Package would be ignored # 2026-03-13T22:09:38,743 ############################ 2026-03-13T22:09:38,744 Python recognizes 'rna_tools.tools.webserver-engine.admin.js.admin' as an importable package[^1], 2026-03-13T22:09:38,744 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,745 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,746 package, please make sure that 'rna_tools.tools.webserver-engine.admin.js.admin' is explicitly added 2026-03-13T22:09:38,746 to the `packages` configuration field. 2026-03-13T22:09:38,747 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,748 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,748 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,749 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,750 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,752 If you don't want 'rna_tools.tools.webserver-engine.admin.js.admin' to be distributed and are 2026-03-13T22:09:38,752 already explicitly excluding 'rna_tools.tools.webserver-engine.admin.js.admin' via 2026-03-13T22:09:38,753 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,753 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,753 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,754 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,755 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,756 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,757 even if it does not contain any `.py` files. 2026-03-13T22:09:38,757 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,758 directory, all directories are treated like packages. 2026-03-13T22:09:38,758 ******************************************************************************** 2026-03-13T22:09:38,759 !! 2026-03-13T22:09:38,759 check.warn(importable) 2026-03-13T22:09:38,760 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app' is absent from the `packages` configuration. 2026-03-13T22:09:38,760 !! 2026-03-13T22:09:38,761 ******************************************************************************** 2026-03-13T22:09:38,762 ############################ 2026-03-13T22:09:38,762 # Package would be ignored # 2026-03-13T22:09:38,763 ############################ 2026-03-13T22:09:38,763 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app' as an importable package[^1], 2026-03-13T22:09:38,764 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,765 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,765 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app' is explicitly added 2026-03-13T22:09:38,766 to the `packages` configuration field. 2026-03-13T22:09:38,767 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,767 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,768 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,769 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,770 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,771 If you don't want 'rna_tools.tools.webserver-engine.app.static.app' to be distributed and are 2026-03-13T22:09:38,772 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app' via 2026-03-13T22:09:38,772 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,773 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,773 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,774 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,775 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,777 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,777 even if it does not contain any `.py` files. 2026-03-13T22:09:38,778 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,778 directory, all directories are treated like packages. 2026-03-13T22:09:38,779 ******************************************************************************** 2026-03-13T22:09:38,780 !! 2026-03-13T22:09:38,781 check.warn(importable) 2026-03-13T22:09:38,781 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is absent from the `packages` configuration. 2026-03-13T22:09:38,781 !! 2026-03-13T22:09:38,782 ******************************************************************************** 2026-03-13T22:09:38,783 ############################ 2026-03-13T22:09:38,783 # Package would be ignored # 2026-03-13T22:09:38,783 ############################ 2026-03-13T22:09:38,784 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' as an importable package[^1], 2026-03-13T22:09:38,784 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,785 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,786 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' is explicitly added 2026-03-13T22:09:38,786 to the `packages` configuration field. 2026-03-13T22:09:38,787 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,787 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,788 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,789 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,790 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,791 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' to be distributed and are 2026-03-13T22:09:38,791 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.css' via 2026-03-13T22:09:38,792 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,792 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,793 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,794 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,795 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,797 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,798 even if it does not contain any `.py` files. 2026-03-13T22:09:38,798 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,799 directory, all directories are treated like packages. 2026-03-13T22:09:38,799 ******************************************************************************** 2026-03-13T22:09:38,800 !! 2026-03-13T22:09:38,801 check.warn(importable) 2026-03-13T22:09:38,801 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is absent from the `packages` configuration. 2026-03-13T22:09:38,802 !! 2026-03-13T22:09:38,803 ******************************************************************************** 2026-03-13T22:09:38,803 ############################ 2026-03-13T22:09:38,804 # Package would be ignored # 2026-03-13T22:09:38,804 ############################ 2026-03-13T22:09:38,805 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' as an importable package[^1], 2026-03-13T22:09:38,805 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,807 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,807 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' is explicitly added 2026-03-13T22:09:38,808 to the `packages` configuration field. 2026-03-13T22:09:38,813 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,814 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,814 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,815 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,816 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,817 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' to be distributed and are 2026-03-13T22:09:38,817 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.img' via 2026-03-13T22:09:38,818 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,818 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,819 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,820 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,820 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,822 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,823 even if it does not contain any `.py` files. 2026-03-13T22:09:38,824 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,824 directory, all directories are treated like packages. 2026-03-13T22:09:38,825 ******************************************************************************** 2026-03-13T22:09:38,826 !! 2026-03-13T22:09:38,826 check.warn(importable) 2026-03-13T22:09:38,827 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is absent from the `packages` configuration. 2026-03-13T22:09:38,827 !! 2026-03-13T22:09:38,828 ******************************************************************************** 2026-03-13T22:09:38,829 ############################ 2026-03-13T22:09:38,829 # Package would be ignored # 2026-03-13T22:09:38,830 ############################ 2026-03-13T22:09:38,830 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' as an importable package[^1], 2026-03-13T22:09:38,831 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,832 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,832 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' is explicitly added 2026-03-13T22:09:38,833 to the `packages` configuration field. 2026-03-13T22:09:38,834 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,834 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,835 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,836 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,837 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,838 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' to be distributed and are 2026-03-13T22:09:38,839 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.bootstrap.js' via 2026-03-13T22:09:38,839 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,840 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,840 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,841 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,842 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,843 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,844 even if it does not contain any `.py` files. 2026-03-13T22:09:38,844 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,845 directory, all directories are treated like packages. 2026-03-13T22:09:38,845 ******************************************************************************** 2026-03-13T22:09:38,846 !! 2026-03-13T22:09:38,846 check.warn(importable) 2026-03-13T22:09:38,847 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.demo' is absent from the `packages` configuration. 2026-03-13T22:09:38,847 !! 2026-03-13T22:09:38,848 ******************************************************************************** 2026-03-13T22:09:38,849 ############################ 2026-03-13T22:09:38,849 # Package would be ignored # 2026-03-13T22:09:38,850 ############################ 2026-03-13T22:09:38,850 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.demo' as an importable package[^1], 2026-03-13T22:09:38,851 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,852 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,852 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.demo' is explicitly added 2026-03-13T22:09:38,853 to the `packages` configuration field. 2026-03-13T22:09:38,854 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,854 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,855 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,856 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,857 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,858 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.demo' to be distributed and are 2026-03-13T22:09:38,858 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.demo' via 2026-03-13T22:09:38,859 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,859 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,860 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,861 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,862 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,864 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,864 even if it does not contain any `.py` files. 2026-03-13T22:09:38,865 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,865 directory, all directories are treated like packages. 2026-03-13T22:09:38,866 ******************************************************************************** 2026-03-13T22:09:38,868 !! 2026-03-13T22:09:38,869 check.warn(importable) 2026-03-13T22:09:38,870 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is absent from the `packages` configuration. 2026-03-13T22:09:38,870 !! 2026-03-13T22:09:38,871 ******************************************************************************** 2026-03-13T22:09:38,872 ############################ 2026-03-13T22:09:38,872 # Package would be ignored # 2026-03-13T22:09:38,873 ############################ 2026-03-13T22:09:38,873 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.dropzone' as an importable package[^1], 2026-03-13T22:09:38,873 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,874 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,875 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.dropzone' is explicitly added 2026-03-13T22:09:38,875 to the `packages` configuration field. 2026-03-13T22:09:38,877 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,877 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,878 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,879 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,880 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,881 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.dropzone' to be distributed and are 2026-03-13T22:09:38,881 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.dropzone' via 2026-03-13T22:09:38,882 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,882 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,883 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,884 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,885 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,887 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,887 even if it does not contain any `.py` files. 2026-03-13T22:09:38,888 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,888 directory, all directories are treated like packages. 2026-03-13T22:09:38,889 ******************************************************************************** 2026-03-13T22:09:38,890 !! 2026-03-13T22:09:38,891 check.warn(importable) 2026-03-13T22:09:38,891 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.help' is absent from the `packages` configuration. 2026-03-13T22:09:38,892 !! 2026-03-13T22:09:38,893 ******************************************************************************** 2026-03-13T22:09:38,893 ############################ 2026-03-13T22:09:38,894 # Package would be ignored # 2026-03-13T22:09:38,895 ############################ 2026-03-13T22:09:38,895 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.help' as an importable package[^1], 2026-03-13T22:09:38,896 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,897 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,897 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.help' is explicitly added 2026-03-13T22:09:38,898 to the `packages` configuration field. 2026-03-13T22:09:38,899 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,900 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,900 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,901 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,902 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,903 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.help' to be distributed and are 2026-03-13T22:09:38,904 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.help' via 2026-03-13T22:09:38,904 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,905 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,905 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,906 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,907 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,909 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,909 even if it does not contain any `.py` files. 2026-03-13T22:09:38,910 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,911 directory, all directories are treated like packages. 2026-03-13T22:09:38,911 ******************************************************************************** 2026-03-13T22:09:38,912 !! 2026-03-13T22:09:38,913 check.warn(importable) 2026-03-13T22:09:38,913 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.static.app.img' is absent from the `packages` configuration. 2026-03-13T22:09:38,914 !! 2026-03-13T22:09:38,915 ******************************************************************************** 2026-03-13T22:09:38,916 ############################ 2026-03-13T22:09:38,916 # Package would be ignored # 2026-03-13T22:09:38,917 ############################ 2026-03-13T22:09:38,917 Python recognizes 'rna_tools.tools.webserver-engine.app.static.app.img' as an importable package[^1], 2026-03-13T22:09:38,918 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,919 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,920 package, please make sure that 'rna_tools.tools.webserver-engine.app.static.app.img' is explicitly added 2026-03-13T22:09:38,920 to the `packages` configuration field. 2026-03-13T22:09:38,922 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,922 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,923 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,924 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,925 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,926 If you don't want 'rna_tools.tools.webserver-engine.app.static.app.img' to be distributed and are 2026-03-13T22:09:38,927 already explicitly excluding 'rna_tools.tools.webserver-engine.app.static.app.img' via 2026-03-13T22:09:38,928 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,928 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,929 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,930 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,931 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,932 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,933 even if it does not contain any `.py` files. 2026-03-13T22:09:38,933 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,934 directory, all directories are treated like packages. 2026-03-13T22:09:38,934 ******************************************************************************** 2026-03-13T22:09:38,935 !! 2026-03-13T22:09:38,936 check.warn(importable) 2026-03-13T22:09:38,937 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates' is absent from the `packages` configuration. 2026-03-13T22:09:38,937 !! 2026-03-13T22:09:38,939 ******************************************************************************** 2026-03-13T22:09:38,939 ############################ 2026-03-13T22:09:38,940 # Package would be ignored # 2026-03-13T22:09:38,941 ############################ 2026-03-13T22:09:38,941 Python recognizes 'rna_tools.tools.webserver-engine.app.templates' as an importable package[^1], 2026-03-13T22:09:38,942 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,943 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,944 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates' is explicitly added 2026-03-13T22:09:38,944 to the `packages` configuration field. 2026-03-13T22:09:38,946 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,946 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,947 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,948 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,950 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,951 If you don't want 'rna_tools.tools.webserver-engine.app.templates' to be distributed and are 2026-03-13T22:09:38,951 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates' via 2026-03-13T22:09:38,952 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,953 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,953 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,955 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,956 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,958 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,959 even if it does not contain any `.py` files. 2026-03-13T22:09:38,960 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,960 directory, all directories are treated like packages. 2026-03-13T22:09:38,961 ******************************************************************************** 2026-03-13T22:09:38,962 !! 2026-03-13T22:09:38,963 check.warn(importable) 2026-03-13T22:09:38,964 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.app.templates.archive' is absent from the `packages` configuration. 2026-03-13T22:09:38,964 !! 2026-03-13T22:09:38,966 ******************************************************************************** 2026-03-13T22:09:38,966 ############################ 2026-03-13T22:09:38,967 # Package would be ignored # 2026-03-13T22:09:38,968 ############################ 2026-03-13T22:09:38,968 Python recognizes 'rna_tools.tools.webserver-engine.app.templates.archive' as an importable package[^1], 2026-03-13T22:09:38,969 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:38,970 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:38,971 package, please make sure that 'rna_tools.tools.webserver-engine.app.templates.archive' is explicitly added 2026-03-13T22:09:38,972 to the `packages` configuration field. 2026-03-13T22:09:38,973 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:38,973 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:38,974 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:38,975 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:38,977 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:38,978 If you don't want 'rna_tools.tools.webserver-engine.app.templates.archive' to be distributed and are 2026-03-13T22:09:38,979 already explicitly excluding 'rna_tools.tools.webserver-engine.app.templates.archive' via 2026-03-13T22:09:38,979 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:38,980 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:38,981 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:38,982 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:38,984 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:38,986 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:38,987 even if it does not contain any `.py` files. 2026-03-13T22:09:38,988 On the other hand, currently there is no concept of package data 2026-03-13T22:09:38,989 directory, all directories are treated like packages. 2026-03-13T22:09:38,989 ******************************************************************************** 2026-03-13T22:09:38,995 !! 2026-03-13T22:09:38,996 check.warn(importable) 2026-03-13T22:09:38,997 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.css' is absent from the `packages` configuration. 2026-03-13T22:09:38,998 !! 2026-03-13T22:09:39,001 ******************************************************************************** 2026-03-13T22:09:39,002 ############################ 2026-03-13T22:09:39,011 # Package would be ignored # 2026-03-13T22:09:39,036 ############################ 2026-03-13T22:09:39,044 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.css' as an importable package[^1], 2026-03-13T22:09:39,046 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:39,047 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:39,048 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.css' is explicitly added 2026-03-13T22:09:39,049 to the `packages` configuration field. 2026-03-13T22:09:39,052 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:39,053 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:39,053 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:39,054 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:39,055 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:39,056 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.css' to be distributed and are 2026-03-13T22:09:39,056 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.css' via 2026-03-13T22:09:39,057 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:39,057 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:39,058 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:39,059 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:39,060 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:39,061 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:39,061 even if it does not contain any `.py` files. 2026-03-13T22:09:39,062 On the other hand, currently there is no concept of package data 2026-03-13T22:09:39,062 directory, all directories are treated like packages. 2026-03-13T22:09:39,063 ******************************************************************************** 2026-03-13T22:09:39,064 !! 2026-03-13T22:09:39,064 check.warn(importable) 2026-03-13T22:09:39,065 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.img' is absent from the `packages` configuration. 2026-03-13T22:09:39,065 !! 2026-03-13T22:09:39,066 ******************************************************************************** 2026-03-13T22:09:39,066 ############################ 2026-03-13T22:09:39,067 # Package would be ignored # 2026-03-13T22:09:39,067 ############################ 2026-03-13T22:09:39,068 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.img' as an importable package[^1], 2026-03-13T22:09:39,068 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:39,069 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:39,070 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.img' is explicitly added 2026-03-13T22:09:39,070 to the `packages` configuration field. 2026-03-13T22:09:39,071 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:39,072 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:39,072 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:39,073 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:39,074 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:39,075 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.img' to be distributed and are 2026-03-13T22:09:39,076 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.img' via 2026-03-13T22:09:39,076 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:39,077 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:39,077 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:39,079 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:39,080 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:39,081 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:39,082 even if it does not contain any `.py` files. 2026-03-13T22:09:39,083 On the other hand, currently there is no concept of package data 2026-03-13T22:09:39,084 directory, all directories are treated like packages. 2026-03-13T22:09:39,087 ******************************************************************************** 2026-03-13T22:09:39,093 !! 2026-03-13T22:09:39,097 check.warn(importable) 2026-03-13T22:09:39,097 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.django_extensions.js' is absent from the `packages` configuration. 2026-03-13T22:09:39,098 !! 2026-03-13T22:09:39,100 ******************************************************************************** 2026-03-13T22:09:39,100 ############################ 2026-03-13T22:09:39,101 # Package would be ignored # 2026-03-13T22:09:39,102 ############################ 2026-03-13T22:09:39,102 Python recognizes 'rna_tools.tools.webserver-engine.django_extensions.js' as an importable package[^1], 2026-03-13T22:09:39,103 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:39,104 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:39,105 package, please make sure that 'rna_tools.tools.webserver-engine.django_extensions.js' is explicitly added 2026-03-13T22:09:39,106 to the `packages` configuration field. 2026-03-13T22:09:39,107 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:39,109 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:39,110 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:39,114 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:39,115 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:39,116 If you don't want 'rna_tools.tools.webserver-engine.django_extensions.js' to be distributed and are 2026-03-13T22:09:39,117 already explicitly excluding 'rna_tools.tools.webserver-engine.django_extensions.js' via 2026-03-13T22:09:39,117 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:39,119 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:39,120 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:39,123 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:39,126 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:39,128 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:39,129 even if it does not contain any `.py` files. 2026-03-13T22:09:39,130 On the other hand, currently there is no concept of package data 2026-03-13T22:09:39,130 directory, all directories are treated like packages. 2026-03-13T22:09:39,131 ******************************************************************************** 2026-03-13T22:09:39,132 !! 2026-03-13T22:09:39,132 check.warn(importable) 2026-03-13T22:09:39,133 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.webserver-engine.docs' is absent from the `packages` configuration. 2026-03-13T22:09:39,133 !! 2026-03-13T22:09:39,135 ******************************************************************************** 2026-03-13T22:09:39,135 ############################ 2026-03-13T22:09:39,136 # Package would be ignored # 2026-03-13T22:09:39,136 ############################ 2026-03-13T22:09:39,136 Python recognizes 'rna_tools.tools.webserver-engine.docs' as an importable package[^1], 2026-03-13T22:09:39,137 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:39,137 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:39,138 package, please make sure that 'rna_tools.tools.webserver-engine.docs' is explicitly added 2026-03-13T22:09:39,138 to the `packages` configuration field. 2026-03-13T22:09:39,139 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:39,140 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:39,141 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:39,142 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:39,143 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:39,144 If you don't want 'rna_tools.tools.webserver-engine.docs' to be distributed and are 2026-03-13T22:09:39,144 already explicitly excluding 'rna_tools.tools.webserver-engine.docs' via 2026-03-13T22:09:39,145 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:39,145 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:39,146 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:39,147 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:39,148 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:39,149 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:39,150 even if it does not contain any `.py` files. 2026-03-13T22:09:39,150 On the other hand, currently there is no concept of package data 2026-03-13T22:09:39,151 directory, all directories are treated like packages. 2026-03-13T22:09:39,151 ******************************************************************************** 2026-03-13T22:09:39,153 !! 2026-03-13T22:09:39,153 check.warn(importable) 2026-03-13T22:09:39,154 /tmp/pip-build-env-4dep8bqe/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'rna_tools.tools.workflow' is absent from the `packages` configuration. 2026-03-13T22:09:39,154 !! 2026-03-13T22:09:39,155 ******************************************************************************** 2026-03-13T22:09:39,156 ############################ 2026-03-13T22:09:39,157 # Package would be ignored # 2026-03-13T22:09:39,157 ############################ 2026-03-13T22:09:39,158 Python recognizes 'rna_tools.tools.workflow' as an importable package[^1], 2026-03-13T22:09:39,158 but it is absent from setuptools' `packages` configuration. 2026-03-13T22:09:39,159 This leads to an ambiguous overall configuration. If you want to distribute this 2026-03-13T22:09:39,160 package, please make sure that 'rna_tools.tools.workflow' is explicitly added 2026-03-13T22:09:39,160 to the `packages` configuration field. 2026-03-13T22:09:39,161 Alternatively, you can also rely on setuptools' discovery methods 2026-03-13T22:09:39,162 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-03-13T22:09:39,162 instead of `find_packages(...)`/`find:`). 2026-03-13T22:09:39,164 You can read more about "package discovery" on setuptools documentation page: 2026-03-13T22:09:39,164 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-03-13T22:09:39,165 If you don't want 'rna_tools.tools.workflow' to be distributed and are 2026-03-13T22:09:39,165 already explicitly excluding 'rna_tools.tools.workflow' via 2026-03-13T22:09:39,166 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-03-13T22:09:39,166 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-03-13T22:09:39,166 combination with a more fine grained `package-data` configuration. 2026-03-13T22:09:39,167 You can read more about "package data files" on setuptools documentation page: 2026-03-13T22:09:39,168 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-03-13T22:09:39,169 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-03-13T22:09:39,170 even if it does not contain any `.py` files. 2026-03-13T22:09:39,170 On the other hand, currently there is no concept of package data 2026-03-13T22:09:39,171 directory, all directories are treated like packages. 2026-03-13T22:09:39,171 ******************************************************************************** 2026-03-13T22:09:39,172 !! 2026-03-13T22:09:39,172 check.warn(importable) 2026-03-13T22:09:39,173 Failed to load config from /tmp/pip-wheel-o0qj196o/rna-tools_68a68f9c2b7346229ec33c6269c013a9/pyproject.toml: 'tool' 2026-03-13T22:09:39,173 Try to load it from setup.cfg 2026-03-13T22:09:39,174 copying rna_tools/pytest.ini -> build/lib/rna_tools 2026-03-13T22:09:39,174 copying rna_tools/rchie.png -> build/lib/rna_tools 2026-03-13T22:09:39,175 copying rna_tools/shell_rc.sh -> build/lib/rna_tools 2026-03-13T22:09:39,175 copying rna_tools/test.sh -> build/lib/rna_tools 2026-03-13T22:09:39,175 creating build/lib/rna_tools/data 2026-03-13T22:09:39,176 copying rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,176 copying rna_tools/data/A.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,177 copying rna_tools/data/ACGU.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,177 copying rna_tools/data/C.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,178 copying rna_tools/data/G.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,178 copying rna_tools/data/PO3_inner.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,179 copying rna_tools/data/U.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,180 copying rna_tools/data/o2prim.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,180 copying rna_tools/data/op4.pdb -> build/lib/rna_tools/data 2026-03-13T22:09:39,180 copying rna_tools/data/pdb_ids.txt -> build/lib/rna_tools/data 2026-03-13T22:09:39,181 copying rna_tools/data/rna_pdb_errors.csv -> build/lib/rna_tools/data 2026-03-13T22:09:39,181 copying rna_tools/data/shape.txt -> build/lib/rna_tools/data 2026-03-13T22:09:39,182 creating build/lib/rna_tools/tests 2026-03-13T22:09:39,182 copying rna_tools/tests/test_eval.py -> build/lib/rna_tools/tests 2026-03-13T22:09:39,183 copying rna_tools/tests/test_rna_ss_pred.sh -> build/lib/rna_tools/tests 2026-03-13T22:09:39,183 copying rna_tools/tests/test_rnafold.py -> build/lib/rna_tools/tests 2026-03-13T22:09:39,184 copying rna_tools/tests/test_seq_cyclefold.py -> build/lib/rna_tools/tests 2026-03-13T22:09:39,184 copying rna_tools/tests/test_seq_mcfold.py -> build/lib/rna_tools/tests 2026-03-13T22:09:39,185 copying rna_tools/tests/test_seq_mcfold2.py -> build/lib/rna_tools/tests 2026-03-13T22:09:39,185 creating build/lib/rna_tools/tests/test_import_module 2026-03-13T22:09:39,186 copying rna_tools/tests/test_import_module/rchie.png -> build/lib/rna_tools/tests/test_import_module 2026-03-13T22:09:39,186 copying rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/lib/rna_tools/tests/test_import_module 2026-03-13T22:09:39,187 creating build/lib/rna_tools/tests/test_import_module/test_data 2026-03-13T22:09:39,187 copying rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tests/test_import_module/test_data 2026-03-13T22:09:39,188 creating build/lib/rna_tools/tools/df 2026-03-13T22:09:39,188 copying rna_tools/tools/df/rna_df_concat.py -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,189 copying rna_tools/tools/df/rna_df_csv_sort.py -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,189 copying rna_tools/tools/df/rna_df_merge.py -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,189 copying rna_tools/tools/df/rna_df_merge_on.py -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,190 copying rna_tools/tools/df/rna_df_merge_two.py -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,190 copying rna_tools/tools/df/test.sh -> build/lib/rna_tools/tools/df 2026-03-13T22:09:39,191 creating build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,191 copying rna_tools/tools/df/test_data/cga_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,191 copying rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,192 copying rna_tools/tools/df/test_data/d3.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,192 copying rna_tools/tools/df/test_data/d8.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,193 copying rna_tools/tools/df/test_data/min_2.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,193 copying rna_tools/tools/df/test_data/min_3.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,194 copying rna_tools/tools/df/test_data/min_4.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,194 copying rna_tools/tools/df/test_data/rna_df_concat.py -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,195 copying rna_tools/tools/df/test_data/rna_df_merge.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,195 copying rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/lib/rna_tools/tools/df/test_data 2026-03-13T22:09:39,195 creating build/lib/rna_tools/tools/openfold 2026-03-13T22:09:39,196 copying rna_tools/tools/openfold/rna_geometric_cropping.py -> build/lib/rna_tools/tools/openfold 2026-03-13T22:09:39,196 copying rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/lib/rna_tools/tools/openfold 2026-03-13T22:09:39,197 copying rna_tools/tools/openfold/test.sh -> build/lib/rna_tools/tools/openfold 2026-03-13T22:09:39,197 creating build/lib/rna_tools/tools/proteins 2026-03-13T22:09:39,198 copying rna_tools/tools/proteins/1djf.pdb -> build/lib/rna_tools/tools/proteins 2026-03-13T22:09:39,198 copying rna_tools/tools/proteins/calc_distances.py -> build/lib/rna_tools/tools/proteins 2026-03-13T22:09:39,199 copying rna_tools/tools/proteins/test.sh -> build/lib/rna_tools/tools/proteins 2026-03-13T22:09:39,200 copying rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/lib/rna_tools/tools/proteins 2026-03-13T22:09:39,200 creating build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:39,201 copying rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:39,201 copying rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:39,202 copying rna_tools/tools/pymol_color_by_conserv/readme.md -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:39,202 copying rna_tools/tools/pymol_color_by_conserv/test.sh -> build/lib/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:39,203 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data 2026-03-13T22:09:39,203 creating build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:39,204 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:39,204 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:39,205 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:39,205 copying rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:39,206 creating build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:39,206 copying rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:39,207 copying rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:39,207 copying rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/lib/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:39,207 creating build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:39,208 copying rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:39,208 copying rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:39,209 copying rna_tools/tools/pymol_preview_generator/readme.md -> build/lib/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:39,209 creating build/lib/rna_tools/tools/pymol_preview_generator/bash 2026-03-13T22:09:39,210 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-03-13T22:09:39,210 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,211 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,211 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,212 creating build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:39,212 copying rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:39,213 creating build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,213 copying rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,214 copying rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,214 copying rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,215 copying rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,215 copying rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,216 copying rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,216 copying rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/lib/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:39,217 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh 2026-03-13T22:09:39,217 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-03-13T22:09:39,218 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,218 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,219 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:39,219 creating build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:39,220 copying rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:39,220 creating build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,221 copying rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,221 copying rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,222 copying rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,222 copying rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,223 copying rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,223 copying rna_tools/tools/rna_binding_affinity/test.sh -> build/lib/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:39,224 creating build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:39,224 copying rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:39,225 copying rna_tools/tools/rna_calc_gdt/test.sh -> build/lib/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:39,225 creating build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,226 copying rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,226 copying rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,227 copying rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,227 copying rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,228 copying rna_tools/tools/rna_calc_hbonds/readme.md -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,228 copying rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,229 copying rna_tools/tools/rna_calc_hbonds/test.sh -> build/lib/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:39,229 creating build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:09:39,230 copying rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/lib/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:09:39,230 creating build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,231 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,231 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,232 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,234 copying rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,236 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,239 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,242 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,245 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,247 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,249 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,252 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,254 copying rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/lib/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:39,256 creating build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,257 copying rna_tools/tools/rna_get_restraints/.gitignore -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,259 copying rna_tools/tools/rna_get_restraints/README.md -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,261 copying rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,263 copying rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,265 copying rna_tools/tools/rna_get_restraints/test.sh -> build/lib/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:39,267 creating build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:09:39,268 copying rna_tools/tools/rna_multimodels/check.sh -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:09:39,270 copying rna_tools/tools/rna_multimodels/readme.md -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:09:39,272 copying rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:09:39,274 copying rna_tools/tools/rna_multimodels/test_util.py -> build/lib/rna_tools/tools/rna_multimodels 2026-03-13T22:09:39,276 creating build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:39,277 copying rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:39,287 copying rna_tools/tools/rna_multimodels/data/seq.fa -> build/lib/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:39,289 creating build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:39,290 copying rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:39,294 copying rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:39,299 copying rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:39,303 creating build/lib/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:09:39,304 copying rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/lib/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:09:39,312 creating build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:09:39,313 copying rna_tools/tools/rna_rfam/list.txt -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:09:39,317 copying rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:09:39,320 copying rna_tools/tools/rna_rfam/test.sh -> build/lib/rna_tools/tools/rna_rfam 2026-03-13T22:09:39,322 creating build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,323 copying rna_tools/tools/rna_seq_identity/RF03167.cm -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,327 copying rna_tools/tools/rna_seq_identity/output.sto -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,329 copying rna_tools/tools/rna_seq_identity/pairwase.py -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,332 copying rna_tools/tools/rna_seq_identity/readme.md -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,334 copying rna_tools/tools/rna_seq_identity/seq1.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,336 copying rna_tools/tools/rna_seq_identity/seq12.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,338 copying rna_tools/tools/rna_seq_identity/seq2.fa -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,341 copying rna_tools/tools/rna_seq_identity/test.sh -> build/lib/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:39,342 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:39,343 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:39,346 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:39,347 creating build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:39,348 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:39,350 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:39,352 copying rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:39,354 creating build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:39,355 copying rna_tools/tools/rnapuzzle_sender/.gitignore -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:39,357 copying rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:39,359 copying rna_tools/tools/rnapuzzle_sender/test.sh -> build/lib/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:39,361 creating build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,362 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,366 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,372 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,377 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,382 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,388 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,393 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,399 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,405 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,410 copying rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:39,416 creating build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,417 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,423 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,463 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,499 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,505 copying rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:39,511 creating build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:39,512 copying rna_tools/tools/rnashape2ascii/LICENSE -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:39,515 copying rna_tools/tools/rnashape2ascii/README.md -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:39,517 copying rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:39,519 copying rna_tools/tools/rnashape2ascii/test.sh -> build/lib/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:39,521 creating build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:39,522 copying rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:39,525 copying rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/lib/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:39,527 creating build/lib/rna_tools/tools/sandbox 2026-03-13T22:09:39,528 creating build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:39,529 copying rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:39,532 copying rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/lib/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:39,534 creating build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:39,535 copying rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:39,540 copying rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/lib/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:39,545 creating build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,546 copying rna_tools/tools/triplexibility/.gitignore -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,548 copying rna_tools/tools/triplexibility/download-all-pdbs.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,550 copying rna_tools/tools/triplexibility/download-all-triples.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,552 copying rna_tools/tools/triplexibility/download-all.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,554 copying rna_tools/tools/triplexibility/lib.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,556 copying rna_tools/tools/triplexibility/process_triple.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,559 copying rna_tools/tools/triplexibility/readme.md -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,561 copying rna_tools/tools/triplexibility/splix.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,563 copying rna_tools/tools/triplexibility/test.sh -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,565 copying rna_tools/tools/triplexibility/test_all.sh -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,568 copying rna_tools/tools/triplexibility/triple-db.csv -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,575 copying rna_tools/tools/triplexibility/triplexibility.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,577 copying rna_tools/tools/triplexibility/triplexibility2.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,580 copying rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,582 copying rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,584 copying rna_tools/tools/triplexibility/trx.ipynb -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,586 copying rna_tools/tools/triplexibility/trx.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,588 copying rna_tools/tools/triplexibility/trx_analysis.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,590 copying rna_tools/tools/triplexibility/trx_analysis.txt -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,592 copying rna_tools/tools/triplexibility/trx_mutagen.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,594 copying rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,596 copying rna_tools/tools/triplexibility/trx_score.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,598 copying rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,600 copying rna_tools/tools/triplexibility/trx_score_growth.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,602 copying rna_tools/tools/triplexibility/trx_score_onCol.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,605 copying rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/lib/rna_tools/tools/triplexibility 2026-03-13T22:09:39,607 creating build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,608 copying rna_tools/tools/triplexibility/data/XcWWX.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,610 copying rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,612 copying rna_tools/tools/triplexibility/data/db.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,614 copying rna_tools/tools/triplexibility/data/db_trx2.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,617 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,619 copying rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/lib/rna_tools/tools/triplexibility/data 2026-03-13T22:09:39,621 creating build/lib/rna_tools/tools/triplexibility/db 2026-03-13T22:09:39,622 copying rna_tools/tools/triplexibility/db/gendb.py -> build/lib/rna_tools/tools/triplexibility/db 2026-03-13T22:09:39,624 creating build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,625 copying rna_tools/tools/workflow/README.md -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,627 copying rna_tools/tools/workflow/after_peyote_clean.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,629 copying rna_tools/tools/workflow/automatix.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,631 copying rna_tools/tools/workflow/chunker.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,633 copying rna_tools/tools/workflow/clean.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,635 copying rna_tools/tools/workflow/evox.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,637 copying rna_tools/tools/workflow/inf_all.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,639 copying rna_tools/tools/workflow/mass_inf.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,641 copying rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,643 copying rna_tools/tools/workflow/mqaprna_run copy.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,650 copying rna_tools/tools/workflow/mqaprna_run.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,657 copying rna_tools/tools/workflow/pdb_list.txt -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,659 copying rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,661 copying rna_tools/tools/workflow/rm_less_2k.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,663 copying rna_tools/tools/workflow/rna_workflow.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,665 copying rna_tools/tools/workflow/rp13_automatix.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,667 copying rna_tools/tools/workflow/run -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,670 copying rna_tools/tools/workflow/run.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,672 copying rna_tools/tools/workflow/run_1 -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,674 copying rna_tools/tools/workflow/test.sh -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,676 copying rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/lib/rna_tools/tools/workflow 2026-03-13T22:09:39,677 copying rna_tools/tools/rna_calc_rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:39,680 copying rna_tools/tools/rna_calc_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:39,682 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,683 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,685 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,687 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,689 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,691 copying rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,693 copying rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,697 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,700 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,702 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,703 copying rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,705 copying rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,707 copying rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,711 copying rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,716 copying rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,720 copying rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:39,724 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,725 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,786 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,851 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,860 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,869 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,878 copying rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:39,881 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-03-13T22:09:39,882 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:39,883 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:39,887 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:39,891 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:39,895 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:39,898 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,899 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,903 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,907 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,910 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,914 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:39,917 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:39,918 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:39,921 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:39,928 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:39,937 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:39,939 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:39,948 copying rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:39,964 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:09:39,965 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:09:39,970 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:39,971 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:39,975 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:39,979 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:39,983 copying rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:39,988 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,989 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,991 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,993 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,995 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,997 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:39,998 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:40,003 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:40,007 copying rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:40,009 creating build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:40,010 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:40,012 copying rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:40,014 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:40,016 copying rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:40,019 copying rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:40,021 copying rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:40,023 copying rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:40,026 creating build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,027 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,032 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,037 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,043 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,047 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,050 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,052 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,053 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,055 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,057 copying rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:40,059 copying rna_tools/tools/rna_rosetta/.gitignore -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:40,061 copying rna_tools/tools/rna_rosetta/test.sh -> build/lib/rna_tools/tools/rna_rosetta 2026-03-13T22:09:40,063 creating build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,064 copying rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,067 copying rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,071 copying rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,074 copying rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,078 copying rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,080 copying rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,082 copying rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,084 copying rna_tools/tools/rna_rosetta/test_data/selected.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,089 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,093 copying rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,100 copying rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,103 copying rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:40,105 creating build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,106 copying rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,108 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,110 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,119 copying rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,121 copying rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,123 copying rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,125 copying rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,127 copying rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,129 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,130 copying rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/lib/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:40,132 copying rna_tools/tools/mq/README.md -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:40,134 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:40,136 copying rna_tools/tools/mq/test.sh -> build/lib/rna_tools/tools/mq 2026-03-13T22:09:40,138 creating build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,139 copying rna_tools/tools/mq/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,142 copying rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,145 copying rna_tools/tools/mq/test/1xjrA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,149 copying rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,152 copying rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,156 copying rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,160 copying rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,164 copying rna_tools/tools/mq/test/1zhoH.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,167 copying rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,171 copying rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,174 copying rna_tools/tools/mq/test/6TNA.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,181 copying rna_tools/tools/mq/test/all.csv -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,183 copying rna_tools/tools/mq/test/dfire.csv -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,185 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,188 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,190 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,193 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,196 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,198 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,201 copying rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,204 copying rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,207 copying rna_tools/tools/mq/test/test.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,211 copying rna_tools/tools/mq/test/test2.pdb -> build/lib/rna_tools/tools/mq/test 2026-03-13T22:09:40,214 creating build/lib/rna_tools/tools/mq/tmp 2026-03-13T22:09:40,215 creating build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:09:40,216 copying rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:09:40,218 copying rna_tools/tools/clarna_play/readme.md -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:40,221 copying rna_tools/tools/clarna_play/test.sh -> build/lib/rna_tools/tools/clarna_play 2026-03-13T22:09:40,223 creating build/lib/rna_tools/tools/clarna_play/docs 2026-03-13T22:09:40,223 copying rna_tools/tools/clarna_play/docs/clarna_run.png -> build/lib/rna_tools/tools/clarna_play/docs 2026-03-13T22:09:40,227 creating build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,228 copying rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,232 copying rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,237 copying rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,240 copying rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,243 copying rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,247 copying rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,251 copying rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,257 copying rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,261 copying rna_tools/tools/clarna_play/test_data/ss.fa -> build/lib/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:40,263 creating build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:40,264 copying rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:40,266 copying rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/lib/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:40,268 creating build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:40,269 copying rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:40,274 copying rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:40,278 copying rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/lib/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:40,282 copying rna_tools/tools/rna_refinement/.gitignore -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:09:40,284 copying rna_tools/tools/rna_refinement/test.sh -> build/lib/rna_tools/tools/rna_refinement 2026-03-13T22:09:40,287 creating build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,288 copying rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,292 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,296 copying rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,302 copying rna_tools/tools/rna_refinement/test_data/input.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,306 copying rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,312 copying rna_tools/tools/rna_refinement/test_data/output.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,318 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,323 copying rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/lib/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:40,328 copying rna_tools/tools/mini_moderna3/.coveragerc -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,330 copying rna_tools/tools/mini_moderna3/.gitignore -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,332 copying rna_tools/tools/mini_moderna3/.travis.yml -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,335 copying rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,337 copying rna_tools/tools/mini_moderna3/COPYING -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,340 copying rna_tools/tools/mini_moderna3/MANIFEST.in -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,342 copying rna_tools/tools/mini_moderna3/README.md -> build/lib/rna_tools/tools/mini_moderna3 2026-03-13T22:09:40,345 copying rna_tools/tools/rna_helix_vis/README.md -> build/lib/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:40,347 creating build/lib/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:09:40,348 copying rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/lib/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:09:40,353 creating build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:40,354 copying rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:40,357 copying rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/lib/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:40,362 copying rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:40,475 copying rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:40,484 copying rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:40,495 copying rna_tools/tools/rna_alignment/test.sh -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:40,497 copying rna_tools/tools/rna_alignment/test_rchie.sh -> build/lib/rna_tools/tools/rna_alignment 2026-03-13T22:09:40,499 creating build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:40,500 copying rna_tools/tools/rna_alignment/pngs/rchie.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:40,505 copying rna_tools/tools/rna_alignment/pngs/rscape.png -> build/lib/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:40,508 creating build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,509 copying rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,512 copying rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,514 copying rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,517 copying rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,521 copying rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,525 copying rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,531 copying rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,534 copying rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,536 copying rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,539 copying rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,543 copying rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,546 copying rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,549 copying rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,552 copying rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,556 copying rna_tools/tools/rna_alignment/test_data/ade.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,558 copying rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,561 copying rna_tools/tools/rna_alignment/test_data/af27.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,563 copying rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,566 copying rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,568 copying rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,571 copying rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,573 copying rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,575 copying rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,578 copying rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,580 copying rna_tools/tools/rna_alignment/test_data/target.seq -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,583 copying rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,588 copying rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,592 copying rna_tools/tools/rna_alignment/test_data/xx.fa -> build/lib/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:40,595 creating build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:09:40,596 copying rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/lib/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:09:40,610 creating build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,611 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,614 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,617 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,620 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,623 copying rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:40,625 creating build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,627 copying rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,630 copying rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,633 copying rna_tools/tools/rna_alignment/test_output/mini.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,636 copying rna_tools/tools/rna_alignment/test_output/out.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,639 copying rna_tools/tools/rna_alignment/test_output/plot.png -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,644 copying rna_tools/tools/rna_alignment/test_output/subset.sto -> build/lib/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:40,646 copying rna_tools/tools/plotting/test.sh -> build/lib/rna_tools/tools/plotting 2026-03-13T22:09:40,649 creating build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:09:40,650 copying rna_tools/tools/plotting/test_data/rmsds.csv -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:09:40,653 copying rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:09:40,656 copying rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/lib/rna_tools/tools/plotting/test_data 2026-03-13T22:09:40,659 copying rna_tools/tools/extra_functions/numbering.txt -> build/lib/rna_tools/tools/extra_functions 2026-03-13T22:09:40,662 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:40,664 creating build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:40,665 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:40,669 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:40,673 copying rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:40,677 copying rna_tools/tools/ClashCalc/.gitignore -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:09:40,679 copying rna_tools/tools/ClashCalc/README.md -> build/lib/rna_tools/tools/ClashCalc 2026-03-13T22:09:40,682 creating build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:40,683 copying rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:40,707 copying rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:40,720 copying rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/lib/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:40,735 copying rna_tools/tools/simrna_trajectory/.gitignore -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:40,737 copying rna_tools/tools/simrna_trajectory/subset.trafl -> build/lib/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:40,750 creating build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:09:40,751 copying rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/lib/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:09:40,755 copying rna_tools/tools/rna_sali2dotbracket/README.MD -> build/lib/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:40,757 creating build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:40,758 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:40,763 copying rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/lib/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:40,767 copying rna_tools/tools/md/.gitignore -> build/lib/rna_tools/tools/md 2026-03-13T22:09:40,769 copying rna_tools/tools/md/README.md -> build/lib/rna_tools/tools/md 2026-03-13T22:09:40,772 copying rna_tools/tools/md/out.txt -> build/lib/rna_tools/tools/md 2026-03-13T22:09:40,774 copying rna_tools/tools/md/test.sh -> build/lib/rna_tools/tools/md 2026-03-13T22:09:40,776 creating build/lib/rna_tools/tools/md/data 2026-03-13T22:09:40,777 copying rna_tools/tools/md/data/rnakb_all.txt -> build/lib/rna_tools/tools/md/data 2026-03-13T22:09:40,780 creating build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,781 copying rna_tools/tools/md/test_data/1duq -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,782 copying rna_tools/tools/md/test_data/1duq.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,785 copying rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,789 copying rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,792 copying rna_tools/tools/md/test_data/3nt.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,795 copying rna_tools/tools/md/test_data/3nt_edited.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,797 copying rna_tools/tools/md/test_data/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,800 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,803 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,806 copying rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,808 copying rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,812 copying rna_tools/tools/md/test_data/groups.txt -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,813 copying rna_tools/tools/md/test_data/temp.pdb -> build/lib/rna_tools/tools/md/test_data 2026-03-13T22:09:40,816 creating build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,817 copying rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,821 copying rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,824 copying rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,827 copying rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,829 copying rna_tools/tools/md/test_output/RA5_G.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,832 copying rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/lib/rna_tools/tools/md/test_output 2026-03-13T22:09:40,834 copying rna_tools/tools/pymol_drawing/README.md -> build/lib/rna_tools/tools/pymol_drawing 2026-03-13T22:09:40,836 creating build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:40,837 copying rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:40,842 copying rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:40,846 copying rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/lib/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:40,850 creating build/lib/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:09:40,851 copying rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/lib/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:09:40,853 copying rna_tools/tools/rna_x3dna/readme.rst -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:09:40,855 copying rna_tools/tools/rna_x3dna/test.sh -> build/lib/rna_tools/tools/rna_x3dna 2026-03-13T22:09:40,857 creating build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,858 copying rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,865 copying rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,867 copying rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,873 copying rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,875 copying rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:40,880 copying rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/lib/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:40,882 creating build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:40,884 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:40,886 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:40,889 copying rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:40,893 copying rna_tools/tools/rna_prediction_significance/.gitignore -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:40,895 copying rna_tools/tools/rna_prediction_significance/LICENSE -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:40,898 copying rna_tools/tools/rna_prediction_significance/README.md -> build/lib/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:40,900 creating build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:09:40,902 copying rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/lib/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:09:40,904 copying rna_tools/tools/webserver-engine/.gitignore -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,906 copying rna_tools/tools/webserver-engine/README.md -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,909 copying rna_tools/tools/webserver-engine/ac -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,911 copying rna_tools/tools/webserver-engine/checker.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,913 copying rna_tools/tools/webserver-engine/daemon.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,915 copying rna_tools/tools/webserver-engine/ddev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,918 copying rna_tools/tools/webserver-engine/install.txt -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,920 copying rna_tools/tools/webserver-engine/notes.md -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,922 copying rna_tools/tools/webserver-engine/runme_dev.sh -> build/lib/rna_tools/tools/webserver-engine 2026-03-13T22:09:40,924 creating build/lib/rna_tools/tools/webserver-engine/admin 2026-03-13T22:09:40,925 creating build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,927 copying rna_tools/tools/webserver-engine/admin/css/base.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,930 copying rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,932 copying rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,935 copying rna_tools/tools/webserver-engine/admin/css/forms.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,937 copying rna_tools/tools/webserver-engine/admin/css/ie.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,940 copying rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,942 copying rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/lib/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:40,945 creating build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,946 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,948 copying rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,950 copying rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,953 copying rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,955 copying rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,957 copying rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,960 copying rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,962 copying rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,964 copying rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,966 copying rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,968 copying rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,971 copying rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,973 copying rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,975 copying rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,977 copying rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,980 copying rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,982 copying rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,984 copying rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,986 copying rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,988 copying rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,991 copying rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,993 copying rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,995 copying rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,997 copying rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:40,999 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,002 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,004 copying rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,006 copying rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,008 copying rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,010 copying rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,013 copying rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,015 copying rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,017 copying rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,019 copying rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,021 copying rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,023 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,026 copying rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,029 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,031 copying rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/lib/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:41,033 creating build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:09:41,034 copying rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/lib/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:09:41,037 creating build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,038 copying rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,040 copying rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,043 copying rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,045 copying rna_tools/tools/webserver-engine/admin/js/actions.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,048 copying rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,051 copying rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,053 copying rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,055 copying rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,057 copying rna_tools/tools/webserver-engine/admin/js/compress.py -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,060 copying rna_tools/tools/webserver-engine/admin/js/core.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,063 copying rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,065 copying rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,068 copying rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,070 copying rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,072 copying rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,077 copying rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,081 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,083 copying rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,086 copying rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,088 copying rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/lib/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:41,091 creating build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:41,092 copying rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:41,095 copying rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:41,097 copying rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/lib/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:41,100 creating build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:41,101 copying rna_tools/tools/webserver-engine/docs/admin.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:41,122 copying rna_tools/tools/webserver-engine/docs/demo.png -> build/lib/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:41,141 copying rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:41,143 copying rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:41,145 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:09:41,146 copying rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:09:41,150 creating build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:41,151 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:41,153 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:41,155 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:41,157 copying rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:41,159 copying rna_tools/tools/cluster_load/README.md -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:41,161 copying rna_tools/tools/cluster_load/load -> build/lib/rna_tools/tools/cluster_load 2026-03-13T22:09:41,163 copying rna_tools/tools/misc/rna_ok -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:41,165 copying rna_tools/tools/misc/test.sh -> build/lib/rna_tools/tools/misc 2026-03-13T22:09:41,167 copying rna_tools/tools/rna_filter/.gitignore -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:41,169 copying rna_tools/tools/rna_filter/README.md -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:41,172 copying rna_tools/tools/rna_filter/test.sh -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:41,174 copying rna_tools/tools/rna_filter/test_dca.sh -> build/lib/rna_tools/tools/rna_filter 2026-03-13T22:09:41,175 creating build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:41,176 copying rna_tools/tools/rna_filter/test_data/CG.pdb -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:41,179 copying rna_tools/tools/rna_filter/test_data/CG.trafl -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:41,181 copying rna_tools/tools/rna_filter/test_data/restraints.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:41,183 copying rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/lib/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:41,185 copying rna_tools/tools/rna_calc_inf/readme.md -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:41,187 copying rna_tools/tools/rna_calc_inf/test.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:41,190 copying rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/lib/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:41,192 creating build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:41,192 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:41,198 copying rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/lib/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:41,206 creating build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,207 copying rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,212 copying rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,216 copying rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,220 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,223 copying rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,226 copying rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,232 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,237 copying rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,238 copying rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,241 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,243 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,245 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,247 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,250 copying rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,252 copying rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:41,254 creating build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,255 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,259 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,263 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,268 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,272 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,276 copying rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,280 copying rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,282 copying rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,283 copying rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:41,285 copying rna_tools/tools/diffpdb/.gitignore -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:41,288 copying rna_tools/tools/diffpdb/README.md -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:41,290 copying rna_tools/tools/diffpdb/test.sh -> build/lib/rna_tools/tools/diffpdb 2026-03-13T22:09:41,292 creating build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,293 copying rna_tools/tools/diffpdb/doc/atom-variants.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,296 copying rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,300 copying rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,306 copying rna_tools/tools/diffpdb/doc/missing-op3.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,311 copying rna_tools/tools/diffpdb/doc/screenshot.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,315 copying rna_tools/tools/diffpdb/doc/screenshot2.png -> build/lib/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:41,319 creating build/lib/rna_tools/tools/diffpdb/lib 2026-03-13T22:09:41,320 copying rna_tools/tools/diffpdb/lib/diff2html.py -> build/lib/rna_tools/tools/diffpdb/lib 2026-03-13T22:09:41,323 creating build/lib/rna_tools/tools/diffpdb/output 2026-03-13T22:09:41,324 copying rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/lib/rna_tools/tools/diffpdb/output 2026-03-13T22:09:41,326 creating build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,327 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,332 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,334 copying rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,339 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,342 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,344 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,347 copying rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,349 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,353 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,357 copying rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:41,361 creating build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:41,362 copying rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:41,369 copying rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:41,375 creating build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:41,377 copying rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:41,380 copying rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:41,383 creating build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:41,385 copying rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:41,388 copying rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:41,391 creating build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:41,393 copying rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:41,397 copying rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/lib/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:41,401 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:41,405 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:41,408 creating build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:41,410 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:41,419 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:41,427 copying rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:41,434 copying rna_tools/tools/clarna_app/readme.md -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:41,437 copying rna_tools/tools/clarna_app/test.sh -> build/lib/rna_tools/tools/clarna_app 2026-03-13T22:09:41,440 creating build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:09:41,441 copying rna_tools/tools/clarna_app/data/cl.txt -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:09:41,446 copying rna_tools/tools/clarna_app/data/cl_full.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:09:41,448 copying rna_tools/tools/clarna_app/data/cl_short.csv -> build/lib/rna_tools/tools/clarna_app/data 2026-03-13T22:09:41,451 copying rna_tools/tools/renum_pdb_to_aln/test.sh -> build/lib/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:41,453 creating build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:41,454 copying rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:41,456 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:41,460 copying rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/lib/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:41,462 copying rna_tools/tools/pdb_formatix/README.md -> build/lib/rna_tools/tools/pdb_formatix 2026-03-13T22:09:41,465 copying rna_tools/tools/PyMOL4RNA/README.md -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,467 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,470 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,473 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,476 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,481 copying rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/lib/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:41,485 creating build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,486 copying rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,491 copying rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,496 copying rna_tools/tools/PyMOL4RNA/doc/p.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,502 copying rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,508 copying rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,513 copying rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,529 copying rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,534 copying rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,538 copying rna_tools/tools/PyMOL4RNA/doc/run.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,556 copying rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,570 copying rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/lib/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:41,575 creating build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:09:41,576 copying rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/lib/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:09:41,582 copying rna_tools/tools/clanstix/.gitignore -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,584 copying rna_tools/tools/clanstix/LICENSE -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,587 copying rna_tools/tools/clanstix/README.md -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,590 copying rna_tools/tools/clanstix/colors.txt -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,592 copying rna_tools/tools/clanstix/test.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,595 copying rna_tools/tools/clanstix/test2.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,597 copying rna_tools/tools/clanstix/test3.sh -> build/lib/rna_tools/tools/clanstix 2026-03-13T22:09:41,599 creating build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:09:41,601 copying rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:09:41,604 copying rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:09:41,608 copying rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/lib/rna_tools/tools/clanstix/doc 2026-03-13T22:09:41,631 creating build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,632 copying rna_tools/tools/clanstix/test_data/gmp.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,637 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,642 copying rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,647 copying rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,651 copying rna_tools/tools/clanstix/test_data/matrix.txt -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,653 copying rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,665 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,668 copying rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/lib/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:41,671 creating build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,672 copying rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,677 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,683 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,720 copying rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,724 copying rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/lib/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:41,726 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:41,728 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:41,730 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:41,733 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:41,734 creating build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,735 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,738 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,742 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,744 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,746 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,748 copying rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:41,750 copying rna_tools/tools/mq/FARNA/test.sh -> build/lib/rna_tools/tools/mq/FARNA 2026-03-13T22:09:41,752 creating build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:41,753 copying rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:41,755 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:41,757 copying rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/lib/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:41,759 copying rna_tools/tools/mq/eSCORE/test.sh -> build/lib/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:41,761 creating build/lib/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:09:41,761 copying rna_tools/tools/mq/eSCORE/test/escore.txt -> build/lib/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:09:41,763 copying rna_tools/tools/mq/rsRNASP/test.sh -> build/lib/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:41,765 copying rna_tools/tools/mq/ClashScore/test.sh -> build/lib/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:41,767 copying rna_tools/tools/mq/RASP/test.sh -> build/lib/rna_tools/tools/mq/RASP 2026-03-13T22:09:41,769 copying rna_tools/tools/mq/QRNAS/test.sh -> build/lib/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:41,770 copying rna_tools/tools/mq/Dfire/test.output -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:41,772 copying rna_tools/tools/mq/Dfire/test.sh -> build/lib/rna_tools/tools/mq/Dfire 2026-03-13T22:09:41,775 copying rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/lib/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:41,777 copying rna_tools/tools/mq/RNA3DCNN/test.output -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:41,780 copying rna_tools/tools/mq/RNA3DCNN/test.sh -> build/lib/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:41,782 copying rna_tools/tools/mq/RNAkb/test.sh -> build/lib/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:41,784 creating build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,784 copying rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,788 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,792 copying rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,794 copying rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,798 copying rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,800 copying rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,804 copying rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,808 copying rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,890 copying rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,893 copying rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,896 copying rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,899 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,902 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,905 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,908 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,911 copying rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/lib/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:41,914 copying rna_tools/tools/mq/FARFAR2/test.sh -> build/lib/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:41,916 creating build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,917 copying rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,919 copying rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,922 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,924 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,926 copying rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/lib/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:41,928 copying rna_tools/tools/mq/SimRNA/test.sh -> build/lib/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:41,930 creating build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:41,932 copying rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:41,936 copying rna_tools/tools/mq/SimRNA/test/output.csv -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:41,938 copying rna_tools/tools/mq/SimRNA/test/test.py -> build/lib/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:41,940 copying rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:41,943 copying rna_tools/tools/mq/lib/shellgraphics/README.md -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:41,945 copying rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/lib/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:41,948 copying rna_tools/tools/mq/lib/timex/.gitignore -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:41,950 copying rna_tools/tools/mq/lib/timex/LICENSE -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:41,953 copying rna_tools/tools/mq/lib/timex/README.md -> build/lib/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:41,956 copying rna_tools/tools/mq/lib/wrappers/README.md -> build/lib/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:41,958 copying rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,963 copying rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,967 copying rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,972 copying rna_tools/tools/mq/RASP/test/mq.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,974 copying rna_tools/tools/mq/RASP/test/test.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,976 copying rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/lib/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:41,979 copying rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:41,982 copying rna_tools/tools/mq/QRNAS/test/test.output -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:41,984 copying rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/lib/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:41,989 creating build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:41,990 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:41,994 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:41,996 copying rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:41,999 copying rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:42,001 copying rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:42,003 copying rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:42,006 creating build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,007 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,043 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,152 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,274 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,282 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,284 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,286 copying rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:42,387 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,388 copying rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,392 copying rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,395 copying rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,397 copying rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,402 copying rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,405 copying rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,407 copying rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,410 copying rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,412 copying rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,414 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,416 copying rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,418 copying rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,421 copying rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/lib/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:42,424 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,425 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,427 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,430 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,432 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,434 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,436 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,438 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,440 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,442 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,444 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,446 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,448 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,450 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,452 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,454 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,456 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,459 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,461 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,463 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,465 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,467 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,469 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,471 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,474 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,476 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,478 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,480 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,482 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,485 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,487 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,489 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,491 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,493 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,496 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,498 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,500 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,503 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,505 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,507 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,510 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,512 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,514 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,517 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,519 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,521 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,524 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,526 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,529 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,531 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,534 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,536 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,538 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,540 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,543 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,545 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,547 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,549 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,551 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,553 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,555 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,558 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,560 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,562 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,565 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,567 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,569 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,571 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,574 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,576 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,578 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,580 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,583 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,585 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,587 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,590 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,592 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,594 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,597 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,599 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,601 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,603 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,606 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,608 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,610 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,612 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,615 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,617 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,619 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,621 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,623 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,626 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,628 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,630 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,633 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,635 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,637 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,639 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,642 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,644 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,646 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,649 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,651 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,653 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,656 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,658 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,660 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,662 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,664 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,666 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,669 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,671 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,673 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,675 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,678 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,680 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,682 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,684 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,687 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,689 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,691 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,693 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,696 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,698 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,700 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,702 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,705 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,707 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,709 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,711 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,713 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,715 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,718 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,720 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,722 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,725 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,727 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,729 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,731 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,734 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,736 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,738 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,741 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,743 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,745 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,748 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,750 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,753 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,755 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,758 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,760 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,762 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,764 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,766 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,769 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,771 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,773 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,776 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,778 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,780 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,782 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,784 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,787 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,789 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,791 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,794 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,796 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,798 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,801 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,803 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,805 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,808 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,810 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,813 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,815 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,817 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,820 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,822 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,824 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,826 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,828 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,830 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,833 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,835 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,837 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,839 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,841 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,844 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,846 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,848 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,850 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,853 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,855 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,857 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,860 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,862 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,864 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,866 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,869 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,871 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,874 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,876 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,878 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,880 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,883 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:42,885 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,886 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,888 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,890 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,893 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,895 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,898 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,900 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,903 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,905 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,907 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,909 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,912 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,914 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,916 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,919 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,921 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,923 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,926 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,928 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,931 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,933 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,935 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,937 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,940 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,942 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,944 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,946 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,949 copying rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:42,951 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,952 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,954 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,956 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,959 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,961 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,963 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,965 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,968 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,970 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,972 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,975 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,977 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,979 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,981 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,984 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,986 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,988 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,991 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,993 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,995 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:42,997 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,000 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,002 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,004 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,007 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,009 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,011 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,013 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,016 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,018 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,020 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,023 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,026 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,028 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,031 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,033 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,035 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,037 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,040 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,042 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,044 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,046 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,049 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,051 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,053 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,055 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,058 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,060 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,062 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,065 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,067 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,070 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,072 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,074 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,076 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,079 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,081 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,083 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,085 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,087 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,089 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,092 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,094 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,096 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,099 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,101 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,103 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,106 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,108 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,110 copying rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:43,113 creating build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,114 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,116 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,118 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,121 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,123 copying rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:43,125 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,126 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,129 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,132 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,134 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,137 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,139 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,142 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,145 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,148 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:43,150 creating build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:43,151 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:43,155 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:43,158 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:43,163 copying rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:43,166 copying rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:43,169 copying rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:43,172 copying rna_tools/tools/rna_alignment/utils/test.sh -> build/lib/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:43,174 creating build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,175 copying rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,177 copying rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,179 copying rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,182 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,184 copying rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,186 copying rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,188 copying rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/lib/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:43,190 creating build/lib/rna_tools/tools/webserver-engine/app/static 2026-03-13T22:09:43,191 creating build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:43,192 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:43,194 copying rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:43,372 copying rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:43,374 copying rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:43,377 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:43,378 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:43,381 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:43,384 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:43,389 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:43,392 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-03-13T22:09:43,393 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:43,395 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:43,399 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:43,403 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:43,406 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:43,410 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,411 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,415 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,418 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,422 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,426 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:43,429 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,430 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,433 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,436 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,438 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,440 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,442 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:43,445 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:09:43,446 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:09:43,449 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,451 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,454 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,456 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,459 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,463 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,467 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:43,473 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:43,474 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:43,476 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:43,479 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:09:43,480 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:09:43,483 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:43,484 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:43,487 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:43,491 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:43,493 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:43,495 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,496 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,499 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,501 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,504 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,506 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,508 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,510 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,513 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,515 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,518 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,520 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,523 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,526 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,529 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:43,532 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:43,533 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:43,536 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:43,540 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:43,546 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-03-13T22:09:43,546 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:09:43,547 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:09:43,550 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:09:43,551 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:09:43,553 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:43,554 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:43,558 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:43,561 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:43,564 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-03-13T22:09:43,564 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:09:43,566 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:09:43,568 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:43,570 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:43,572 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:43,575 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:43,577 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:43,579 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:43,580 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:43,583 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:43,585 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:43,586 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:43,589 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:43,591 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:43,594 copying rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:43,601 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:43,602 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:43,604 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:43,606 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:43,607 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:43,610 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:43,613 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:43,614 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:43,617 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:43,619 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:09:43,620 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:09:43,624 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:43,625 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:43,628 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:43,631 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:43,632 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:43,634 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:43,637 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:09:43,638 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:09:43,640 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:43,641 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:43,644 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:43,646 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:43,649 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:43,651 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-03-13T22:09:43,652 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:43,653 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:43,656 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:43,659 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:43,666 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:43,670 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:43,672 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:43,675 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:43,679 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:43,680 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:43,685 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:43,689 copying rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:43,694 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,695 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,704 copying rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,713 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,715 copying rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,719 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,725 copying rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,731 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,736 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,741 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,747 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,754 copying rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,760 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,769 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,772 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,775 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,777 copying rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,779 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,784 copying rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,787 copying rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,790 copying rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,792 copying rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,795 copying rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,798 copying rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,802 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,805 copying rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,807 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,810 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,813 copying rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,816 copying rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,818 copying rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,821 copying rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,824 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,830 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,839 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,842 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,847 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,851 copying rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/lib/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:43,855 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:43,856 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:43,859 copying rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:43,867 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:43,868 copying rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:43,871 copying rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:43,874 creating build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,875 copying rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,878 copying rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,885 copying rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,889 copying rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,892 copying rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,899 copying rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,908 copying rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,916 copying rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,923 copying rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,926 copying rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/lib/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:43,929 creating build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,931 copying rna_tools/tools/webserver-engine/app/templates/about.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,933 copying rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,936 copying rna_tools/tools/webserver-engine/app/templates/assess.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,939 copying rna_tools/tools/webserver-engine/app/templates/base.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,942 copying rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,945 copying rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,949 copying rna_tools/tools/webserver-engine/app/templates/cat.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,951 copying rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,954 copying rna_tools/tools/webserver-engine/app/templates/contact.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,957 copying rna_tools/tools/webserver-engine/app/templates/delete.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,960 copying rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,963 copying rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,965 copying rna_tools/tools/webserver-engine/app/templates/edit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,968 copying rna_tools/tools/webserver-engine/app/templates/errors.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,971 copying rna_tools/tools/webserver-engine/app/templates/extract.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,974 copying rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,976 copying rna_tools/tools/webserver-engine/app/templates/help.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,980 copying rna_tools/tools/webserver-engine/app/templates/home.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,983 copying rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,986 copying rna_tools/tools/webserver-engine/app/templates/min.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,989 copying rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,992 copying rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,994 copying rna_tools/tools/webserver-engine/app/templates/notes.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,997 copying rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:43,999 copying rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,002 copying rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,004 copying rna_tools/tools/webserver-engine/app/templates/seq.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,006 copying rna_tools/tools/webserver-engine/app/templates/ss.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,009 copying rna_tools/tools/webserver-engine/app/templates/swap.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,011 copying rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,013 copying rna_tools/tools/webserver-engine/app/templates/tools.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,016 copying rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/lib/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:44,019 creating build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,020 copying rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,023 copying rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,025 copying rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,028 copying rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,030 copying rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/lib/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:44,033 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:09:44,034 copying rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/lib/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:09:44,036 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:09:44,037 copying rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/lib/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:09:44,039 creating build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:44,040 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:44,043 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:44,046 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:44,048 copying rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/lib/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:44,052 copying rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,056 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,060 copying rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,064 copying rna_tools/tools/pdb_formatix/test/protein.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,067 copying rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,069 copying rna_tools/tools/pdb_formatix/test/test0.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,073 copying rna_tools/tools/pdb_formatix/test/test0.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,077 copying rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,081 copying rna_tools/tools/pdb_formatix/test/test1.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,084 copying rna_tools/tools/pdb_formatix/test/test1.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,087 copying rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,098 copying rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,102 copying rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/lib/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:44,154 UPDATING build/lib/rna_tools/_version.py 2026-03-13T22:09:44,154 set build/lib/rna_tools/_version.py to '3.27.2' 2026-03-13T22:09:44,155 running build_scripts 2026-03-13T22:09:44,155 creating build/scripts-3.11 2026-03-13T22:09:44,156 copying and adjusting rna_tools/rna_pdb_tools.py -> build/scripts-3.11 2026-03-13T22:09:44,160 copying and adjusting rna_tools/rna_pdb_seq.py -> build/scripts-3.11 2026-03-13T22:09:44,162 copying and adjusting rna_tools/rna_calc_fenergy.py -> build/scripts-3.11 2026-03-13T22:09:44,164 copying and adjusting rna_tools/rna_pdb_replace.py -> build/scripts-3.11 2026-03-13T22:09:44,165 copying and adjusting rna_tools/rna_standardize.py -> build/scripts-3.11 2026-03-13T22:09:44,168 copying and adjusting rna_tools/rna_pdb_inspect.py -> build/scripts-3.11 2026-03-13T22:09:44,170 copying and adjusting rna_tools/rna_cif2pdb.py -> build/scripts-3.11 2026-03-13T22:09:44,172 copying and adjusting rna_tools/rna_pdb_fetch.py -> build/scripts-3.11 2026-03-13T22:09:44,174 copying and adjusting rna_tools/rna_pdb_fetch_header.py -> build/scripts-3.11 2026-03-13T22:09:44,175 copying and adjusting rna_tools/tools/misc/rna_tools_which.py -> build/scripts-3.11 2026-03-13T22:09:44,177 copying and adjusting rna_tools/tools/misc/rna_tools_demo.py -> build/scripts-3.11 2026-03-13T22:09:44,179 copying and adjusting rna_tools/tools/workflow/rna_workflow.py -> build/scripts-3.11 2026-03-13T22:09:44,180 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/scripts-3.11 2026-03-13T22:09:44,183 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/scripts-3.11 2026-03-13T22:09:44,185 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/scripts-3.11 2026-03-13T22:09:44,188 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/scripts-3.11 2026-03-13T22:09:44,191 copying and adjusting rna_tools/rna_torsions.py -> build/scripts-3.11 2026-03-13T22:09:44,192 copying and adjusting rna_tools/tools/diffpdb/diffpdb.py -> build/scripts-3.11 2026-03-13T22:09:44,194 copying and adjusting rna_tools/tools/clanstix/rna_clanstix.py -> build/scripts-3.11 2026-03-13T22:09:44,197 copying and adjusting rna_tools/rna_dot2ct.py -> build/scripts-3.11 2026-03-13T22:09:44,198 copying and adjusting rna_tools/rna_secondary_structure_prediction.py -> build/scripts-3.11 2026-03-13T22:09:44,200 copying and adjusting rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/scripts-3.11 2026-03-13T22:09:44,201 copying and adjusting rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/scripts-3.11 2026-03-13T22:09:44,203 copying and adjusting rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/scripts-3.11 2026-03-13T22:09:44,205 copying and adjusting rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/scripts-3.11 2026-03-13T22:09:44,206 copying and adjusting rna_tools/tools/clarna_app/rna_clarna_app.py -> build/scripts-3.11 2026-03-13T22:09:44,208 copying and adjusting rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/scripts-3.11 2026-03-13T22:09:44,210 copying and adjusting rna_tools/tools/misc/rna_add_chain.py -> build/scripts-3.11 2026-03-13T22:09:44,212 copying and adjusting rna_tools/tools/misc/rna_dict2fasta.py -> build/scripts-3.11 2026-03-13T22:09:44,213 copying and adjusting rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/scripts-3.11 2026-03-13T22:09:44,215 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/scripts-3.11 2026-03-13T22:09:44,217 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/scripts-3.11 2026-03-13T22:09:44,219 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/scripts-3.11 2026-03-13T22:09:44,221 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/scripts-3.11 2026-03-13T22:09:44,223 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-03-13T22:09:44,224 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/scripts-3.11 2026-03-13T22:09:44,226 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/scripts-3.11 2026-03-13T22:09:44,228 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/scripts-3.11 2026-03-13T22:09:44,230 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/scripts-3.11 2026-03-13T22:09:44,231 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/scripts-3.11 2026-03-13T22:09:44,233 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/scripts-3.11 2026-03-13T22:09:44,235 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/scripts-3.11 2026-03-13T22:09:44,236 copying and adjusting rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/scripts-3.11 2026-03-13T22:09:44,238 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-03-13T22:09:44,239 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-03-13T22:09:44,241 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-03-13T22:09:44,243 copying and adjusting rna_tools/tools/plotting/rna_plot_hist.py -> build/scripts-3.11 2026-03-13T22:09:44,244 copying and adjusting rna_tools/tools/plotting/rna_plot_density.py -> build/scripts-3.11 2026-03-13T22:09:44,246 copying and adjusting rna_tools/tools/plotting/rna_plot_heatmap.py -> build/scripts-3.11 2026-03-13T22:09:44,247 copying and adjusting rna_tools/tools/plotting/rna_plot_dendogram.py -> build/scripts-3.11 2026-03-13T22:09:44,249 copying and adjusting rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/scripts-3.11 2026-03-13T22:09:44,250 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/scripts-3.11 2026-03-13T22:09:44,252 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/scripts-3.11 2026-03-13T22:09:44,253 copying and adjusting rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/scripts-3.11 2026-03-13T22:09:44,255 copying and adjusting rna_tools/tools/rna_filter/rna_filter.py -> build/scripts-3.11 2026-03-13T22:09:44,257 copying and adjusting rna_tools/tools/rna_filter/rna_ec2x.py -> build/scripts-3.11 2026-03-13T22:09:44,259 copying and adjusting rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/scripts-3.11 2026-03-13T22:09:44,260 copying and adjusting rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/scripts-3.11 2026-03-13T22:09:44,262 copying and adjusting rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/scripts-3.11 2026-03-13T22:09:44,263 copying and adjusting rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/scripts-3.11 2026-03-13T22:09:44,265 copying and adjusting rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/scripts-3.11 2026-03-13T22:09:44,266 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-03-13T22:09:44,268 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/scripts-3.11 2026-03-13T22:09:44,269 copying and adjusting rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/scripts-3.11 2026-03-13T22:09:44,271 copying and adjusting rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/scripts-3.11 2026-03-13T22:09:44,272 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/scripts-3.11 2026-03-13T22:09:44,274 copying and adjusting rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/scripts-3.11 2026-03-13T22:09:44,275 copying and adjusting rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/scripts-3.11 2026-03-13T22:09:44,277 copying and adjusting rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/scripts-3.11 2026-03-13T22:09:44,278 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/scripts-3.11 2026-03-13T22:09:44,281 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/scripts-3.11 2026-03-13T22:09:44,282 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/scripts-3.11 2026-03-13T22:09:44,284 copying and adjusting rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/scripts-3.11 2026-03-13T22:09:44,285 copying and adjusting rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/scripts-3.11 2026-03-13T22:09:44,288 copying and adjusting rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/scripts-3.11 2026-03-13T22:09:44,290 copying and adjusting rna_tools/tools/rna_refinement/rna_refinement.py -> build/scripts-3.11 2026-03-13T22:09:44,292 copying and adjusting rna_tools/rna_simrnaweb_download_job.py -> build/scripts-3.11 2026-03-13T22:09:44,294 copying and adjusting rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/scripts-3.11 2026-03-13T22:09:44,297 copying and adjusting rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/scripts-3.11 2026-03-13T22:09:44,298 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/scripts-3.11 2026-03-13T22:09:44,300 copying and adjusting rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/scripts-3.11 2026-03-13T22:09:44,302 copying and adjusting rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/scripts-3.11 2026-03-13T22:09:44,304 copying and adjusting rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/scripts-3.11 2026-03-13T22:09:44,306 copying and adjusting rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/scripts-3.11 2026-03-13T22:09:44,308 copying and adjusting rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/scripts-3.11 2026-03-13T22:09:44,310 copying and adjusting rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/scripts-3.11 2026-03-13T22:09:44,312 copying and adjusting rna_tools/tools/misc/translate.py -> build/scripts-3.11 2026-03-13T22:09:44,313 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-03-13T22:09:44,314 copying and adjusting rna_tools/tools/misc/reverse.py -> build/scripts-3.11 2026-03-13T22:09:44,316 copying and adjusting rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/scripts-3.11 2026-03-13T22:09:44,317 copying and adjusting rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/scripts-3.11 2026-03-13T22:09:44,319 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/scripts-3.11 2026-03-13T22:09:44,321 copying and adjusting rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/scripts-3.11 2026-03-13T22:09:44,322 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-03-13T22:09:44,324 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/scripts-3.11 2026-03-13T22:09:44,325 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/scripts-3.11 2026-03-13T22:09:44,327 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/scripts-3.11 2026-03-13T22:09:44,328 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/scripts-3.11 2026-03-13T22:09:44,330 copying and adjusting rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/scripts-3.11 2026-03-13T22:09:44,332 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/scripts-3.11 2026-03-13T22:09:44,335 copying and adjusting rna_tools/tools/clarna_play/rna_clarna_run.py -> build/scripts-3.11 2026-03-13T22:09:44,339 copying and adjusting rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/scripts-3.11 2026-03-13T22:09:44,343 copying and adjusting rna_tools/tools/mq/rna_mq_score.py -> build/scripts-3.11 2026-03-13T22:09:44,345 copying and adjusting rna_tools/tools/mq/rna_mq_collect.py -> build/scripts-3.11 2026-03-13T22:09:44,348 copying and adjusting rna_tools/tools/mq/rna_mq_exp.py -> build/scripts-3.11 2026-03-13T22:09:44,350 copying and adjusting rna_tools/tools/mq/rna_mq_plot.py -> build/scripts-3.11 2026-03-13T22:09:44,351 copying rna_tools/tools/mq/rna_mq_remote.sh -> build/scripts-3.11 2026-03-13T22:09:44,354 copying and adjusting rna_tools/tools/mq/rna_mq_wx_collect.py -> build/scripts-3.11 2026-03-13T22:09:44,355 copying and adjusting rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/scripts-3.11 2026-03-13T22:09:44,357 copying and adjusting rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/scripts-3.11 2026-03-13T22:09:44,358 copying and adjusting rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/scripts-3.11 2026-03-13T22:09:44,360 copying and adjusting rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/scripts-3.11 2026-03-13T22:09:44,362 copying and adjusting rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/scripts-3.11 2026-03-13T22:09:44,363 copying and adjusting rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/scripts-3.11 2026-03-13T22:09:44,365 copying and adjusting rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/scripts-3.11 2026-03-13T22:09:44,366 copying and adjusting rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/scripts-3.11 2026-03-13T22:09:44,368 copying and adjusting rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/scripts-3.11 2026-03-13T22:09:44,370 copying and adjusting rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/scripts-3.11 2026-03-13T22:09:44,372 copying and adjusting rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/scripts-3.11 2026-03-13T22:09:44,373 copying and adjusting rna_tools/tools/md/rna_gromacs_ready.py -> build/scripts-3.11 2026-03-13T22:09:44,375 copying and adjusting rna_tools/tools/md/rna_md.py -> build/scripts-3.11 2026-03-13T22:09:44,377 copying and adjusting rna_tools/tools/md/rna_minimize.py -> build/scripts-3.11 2026-03-13T22:09:44,378 copying and adjusting rna_tools/tools/md/rna_traj_n.py -> build/scripts-3.11 2026-03-13T22:09:44,380 copying and adjusting rna_tools/tools/md/rna_traj_range.py -> build/scripts-3.11 2026-03-13T22:09:44,382 copying and adjusting rna_tools/tools/md/rna_traj_nohetm.py -> build/scripts-3.11 2026-03-13T22:09:44,384 copying and adjusting rna_tools/tools/triplexibility/triplexibility.py -> build/scripts-3.11 2026-03-13T22:09:44,386 copying and adjusting rna_tools/tools/triplexibility/triplexibility2.py -> build/scripts-3.11 2026-03-13T22:09:44,389 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/scripts-3.11 2026-03-13T22:09:44,390 copying and adjusting rna_tools/tools/triplexibility/trx_mutagen.py -> build/scripts-3.11 2026-03-13T22:09:44,392 copying and adjusting rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/scripts-3.11 2026-03-13T22:09:44,394 copying and adjusting rna_tools/tools/triplexibility/trx_score.py -> build/scripts-3.11 2026-03-13T22:09:44,396 copying and adjusting rna_tools/tools/triplexibility/trx_score_onCol.py -> build/scripts-3.11 2026-03-13T22:09:44,398 copying and adjusting rna_tools/tools/df/rna_df_csv_sort.py -> build/scripts-3.11 2026-03-13T22:09:44,400 copying and adjusting rna_tools/tools/df/rna_df_concat.py -> build/scripts-3.11 2026-03-13T22:09:44,401 copying and adjusting rna_tools/tools/df/rna_df_merge.py -> build/scripts-3.11 2026-03-13T22:09:44,403 copying and adjusting rna_tools/tools/df/rna_df_merge_on.py -> build/scripts-3.11 2026-03-13T22:09:44,404 copying and adjusting rna_tools/tools/df/rna_df_merge_two.py -> build/scripts-3.11 2026-03-13T22:09:44,406 copying and adjusting rna_tools/tools/misc/rna_ok_mail.py -> build/scripts-3.11 2026-03-13T22:09:44,408 copying rna_tools/tools/misc/rna_ok -> build/scripts-3.11 2026-03-13T22:09:44,410 copying and adjusting rna_tools/tools/misc/rna_test_cuda.py -> build/scripts-3.11 2026-03-13T22:09:44,412 copying and adjusting rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/scripts-3.11 2026-03-13T22:09:44,414 copying and adjusting rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/scripts-3.11 2026-03-13T22:09:44,416 copying and adjusting rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/scripts-3.11 2026-03-13T22:09:44,418 copying and adjusting rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/scripts-3.11 2026-03-13T22:09:44,420 copying and adjusting rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/scripts-3.11 2026-03-13T22:09:44,421 changing mode of build/scripts-3.11/rna_pdb_tools.py from 644 to 755 2026-03-13T22:09:44,422 changing mode of build/scripts-3.11/rna_pdb_seq.py from 644 to 755 2026-03-13T22:09:44,422 changing mode of build/scripts-3.11/rna_calc_fenergy.py from 644 to 755 2026-03-13T22:09:44,423 changing mode of build/scripts-3.11/rna_pdb_replace.py from 644 to 755 2026-03-13T22:09:44,424 changing mode of build/scripts-3.11/rna_standardize.py from 644 to 755 2026-03-13T22:09:44,424 changing mode of build/scripts-3.11/rna_pdb_inspect.py from 644 to 755 2026-03-13T22:09:44,425 changing mode of build/scripts-3.11/rna_cif2pdb.py from 644 to 755 2026-03-13T22:09:44,425 changing mode of build/scripts-3.11/rna_pdb_fetch.py from 644 to 755 2026-03-13T22:09:44,426 changing mode of build/scripts-3.11/rna_pdb_fetch_header.py from 644 to 755 2026-03-13T22:09:44,426 changing mode of build/scripts-3.11/rna_tools_which.py from 644 to 755 2026-03-13T22:09:44,426 changing mode of build/scripts-3.11/rna_tools_demo.py from 644 to 755 2026-03-13T22:09:44,427 changing mode of build/scripts-3.11/rna_workflow.py from 644 to 755 2026-03-13T22:09:44,427 changing mode of build/scripts-3.11/rna_calc_rmsd.py from 644 to 755 2026-03-13T22:09:44,428 changing mode of build/scripts-3.11/rna_calc_rmsd_all_vs_all.py from 644 to 755 2026-03-13T22:09:44,428 changing mode of build/scripts-3.11/rna_calc_rmsd_biopython.py from 644 to 755 2026-03-13T22:09:44,429 changing mode of build/scripts-3.11/rna_plot_alignment_bounds.py from 644 to 755 2026-03-13T22:09:44,429 changing mode of build/scripts-3.11/rna_torsions.py from 644 to 755 2026-03-13T22:09:44,430 changing mode of build/scripts-3.11/diffpdb.py from 644 to 755 2026-03-13T22:09:44,430 changing mode of build/scripts-3.11/rna_clanstix.py from 644 to 755 2026-03-13T22:09:44,431 changing mode of build/scripts-3.11/rna_dot2ct.py from 644 to 755 2026-03-13T22:09:44,431 changing mode of build/scripts-3.11/rna_secondary_structure_prediction.py from 644 to 755 2026-03-13T22:09:44,432 changing mode of build/scripts-3.11/rna_prediction_significance.py from 644 to 755 2026-03-13T22:09:44,432 changing mode of build/scripts-3.11/rna_pdb_merge_into_one.py from 644 to 755 2026-03-13T22:09:44,433 changing mode of build/scripts-3.11/rna_calc_inf.py from 644 to 755 2026-03-13T22:09:44,433 changing mode of build/scripts-3.11/rna_pk_simrna_to_one_line.py from 644 to 755 2026-03-13T22:09:44,434 changing mode of build/scripts-3.11/rna_clarna_app.py from 644 to 755 2026-03-13T22:09:44,434 changing mode of build/scripts-3.11/rna_helix_vis.py from 644 to 755 2026-03-13T22:09:44,435 changing mode of build/scripts-3.11/rna_add_chain.py from 644 to 755 2026-03-13T22:09:44,436 changing mode of build/scripts-3.11/rna_dict2fasta.py from 644 to 755 2026-03-13T22:09:44,436 changing mode of build/scripts-3.11/rna_sali2dotbracket.py from 644 to 755 2026-03-13T22:09:44,437 changing mode of build/scripts-3.11/rna_rosetta_run.py from 644 to 755 2026-03-13T22:09:44,437 changing mode of build/scripts-3.11/rna_rosetta_cluster.py from 644 to 755 2026-03-13T22:09:44,438 changing mode of build/scripts-3.11/rna_rosetta_min.py from 644 to 755 2026-03-13T22:09:44,439 changing mode of build/scripts-3.11/rna_rosetta_n.py from 644 to 755 2026-03-13T22:09:44,439 changing mode of build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py from 644 to 755 2026-03-13T22:09:44,440 changing mode of build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py from 644 to 755 2026-03-13T22:09:44,440 changing mode of build/scripts-3.11/rna_rosetta_check_progress.py from 644 to 755 2026-03-13T22:09:44,441 changing mode of build/scripts-3.11/rna_rosetta_head.py from 644 to 755 2026-03-13T22:09:44,441 changing mode of build/scripts-3.11/rna_rosetta_extract.py from 644 to 755 2026-03-13T22:09:44,442 changing mode of build/scripts-3.11/rna_rosetta_get_score.py from 644 to 755 2026-03-13T22:09:44,443 changing mode of build/scripts-3.11/rna_rosetta_silent_random.py from 644 to 755 2026-03-13T22:09:44,443 changing mode of build/scripts-3.11/rna_rosetta_silent_split.py from 644 to 755 2026-03-13T22:09:44,444 changing mode of build/scripts-3.11/rna_simrna_lowest.py from 644 to 755 2026-03-13T22:09:44,444 changing mode of build/scripts-3.11/rna_simrna_extract.py from 644 to 755 2026-03-13T22:09:44,445 changing mode of build/scripts-3.11/rna_simrna_cluster.py from 644 to 755 2026-03-13T22:09:44,445 changing mode of build/scripts-3.11/rna_plot_hist.py from 644 to 755 2026-03-13T22:09:44,446 changing mode of build/scripts-3.11/rna_plot_density.py from 644 to 755 2026-03-13T22:09:44,447 changing mode of build/scripts-3.11/rna_plot_heatmap.py from 644 to 755 2026-03-13T22:09:44,447 changing mode of build/scripts-3.11/rna_plot_dendogram.py from 644 to 755 2026-03-13T22:09:44,448 changing mode 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build/scripts-3.11/rna_align_get_ss_from_stk.py from 644 to 755 2026-03-13T22:09:44,453 changing mode of build/scripts-3.11/rna_align_fetch_seed.py from 644 to 755 2026-03-13T22:09:44,453 changing mode of build/scripts-3.11/rna_align_fetch_cm.py from 644 to 755 2026-03-13T22:09:44,454 changing mode of build/scripts-3.11/rna_align_sto2csv.py from 644 to 755 2026-03-13T22:09:44,454 changing mode of build/scripts-3.11/rna_align_mfa2sto.py from 644 to 755 2026-03-13T22:09:44,455 changing mode of build/scripts-3.11/rna_alignment_get_species.py from 644 to 755 2026-03-13T22:09:44,455 changing mode of build/scripts-3.11/rna_alignment_process_id.py from 644 to 755 2026-03-13T22:09:44,456 changing mode of build/scripts-3.11/rna_alignment_r2r.py from 644 to 755 2026-03-13T22:09:44,456 changing mode of build/scripts-3.11/rna_align_find_seq_in_alignment.py from 644 to 755 2026-03-13T22:09:44,457 changing mode of build/scripts-3.11/rna_align_foldability.py from 644 to 755 2026-03-13T22:09:44,457 changing mode of build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py from 644 to 755 2026-03-13T22:09:44,458 changing mode of build/scripts-3.11/rna_refinement.py from 644 to 755 2026-03-13T22:09:44,458 changing mode of build/scripts-3.11/rna_simrnaweb_download_job.py from 644 to 755 2026-03-13T22:09:44,459 changing mode of build/scripts-3.11/rna_calc_evo_rmsd.py from 644 to 755 2026-03-13T22:09:44,460 changing mode of build/scripts-3.11/rna_calc_rmsd_multi_targets.py from 644 to 755 2026-03-13T22:09:44,460 changing mode of build/scripts-3.11/rna_calc_rmsd_trafl.py from 644 to 755 2026-03-13T22:09:44,461 changing mode of build/scripts-3.11/rna_cal_rmsd_trafl_plot.py from 644 to 755 2026-03-13T22:09:44,461 changing mode of build/scripts-3.11/rna_x3dna.py from 644 to 755 2026-03-13T22:09:44,462 changing mode of build/scripts-3.11/renum_pdb_to_aln.py from 644 to 755 2026-03-13T22:09:44,462 changing mode of build/scripts-3.11/pdbs_measure_atom_dists.py from 644 to 755 2026-03-13T22:09:44,463 changing mode of build/scripts-3.11/random_assignment_of_nucleotides.py from 644 to 755 2026-03-13T22:09:44,463 changing mode of build/scripts-3.11/select_seq_fromBLAStn_6outfm.py from 644 to 755 2026-03-13T22:09:44,464 changing mode of build/scripts-3.11/translate.py from 644 to 755 2026-03-13T22:09:44,464 changing mode of build/scripts-3.11/reverse.py from 644 to 755 2026-03-13T22:09:44,465 changing mode of build/scripts-3.11/rna_align_strip_stk.py from 644 to 755 2026-03-13T22:09:44,466 changing mode of build/scripts-3.11/pymol_color_by_conserv.py from 644 to 755 2026-03-13T22:09:44,466 changing mode of build/scripts-3.11/pymol_preview_generator.py from 644 to 755 2026-03-13T22:09:44,467 changing mode of build/scripts-3.11/pymol_preview_install.py from 644 to 755 2026-03-13T22:09:44,467 changing mode of build/scripts-3.11/rna_dG2kd.py from 644 to 755 2026-03-13T22:09:44,468 changing mode of build/scripts-3.11/rna_kd2dG.py from 644 to 755 2026-03-13T22:09:44,468 changing mode of build/scripts-3.11/rna_kd2pkd.py from 644 to 755 2026-03-13T22:09:44,469 changing mode of build/scripts-3.11/rna_pkd2dG.py from 644 to 755 2026-03-13T22:09:44,469 changing mode of build/scripts-3.11/rna_pkd2kd.py from 644 to 755 2026-03-13T22:09:44,469 changing mode of build/scripts-3.11/rna_clarna_compare.py from 644 to 755 2026-03-13T22:09:44,470 changing mode of build/scripts-3.11/rna_clarna_run.py from 644 to 755 2026-03-13T22:09:44,470 changing mode of build/scripts-3.11/clarna.py from 644 to 755 2026-03-13T22:09:44,471 changing mode of build/scripts-3.11/rna_mq_score.py from 644 to 755 2026-03-13T22:09:44,471 changing mode of build/scripts-3.11/rna_mq_collect.py from 644 to 755 2026-03-13T22:09:44,472 changing mode of build/scripts-3.11/rna_mq_exp.py from 644 to 755 2026-03-13T22:09:44,472 changing mode of build/scripts-3.11/rna_mq_plot.py from 644 to 755 2026-03-13T22:09:44,473 changing mode of build/scripts-3.11/rna_mq_wx_collect.py from 644 to 755 2026-03-13T22:09:44,473 changing mode of build/scripts-3.11/rna_mq_rna3dcnn.py from 644 to 755 2026-03-13T22:09:44,474 changing mode of build/scripts-3.11/rna_mq_dfire.py from 644 to 755 2026-03-13T22:09:44,474 changing mode of build/scripts-3.11/rna_mq_clashscore.py from 644 to 755 2026-03-13T22:09:44,475 changing mode of build/scripts-3.11/rna_mq_analyzegeometry.py from 644 to 755 2026-03-13T22:09:44,475 changing mode of build/scripts-3.11/rna_mq_rnakb.py from 644 to 755 2026-03-13T22:09:44,476 changing mode of build/scripts-3.11/rna_mq_rsRNASP.py from 644 to 755 2026-03-13T22:09:44,477 changing mode of build/scripts-3.11/rna_mq_eSCORE.py from 644 to 755 2026-03-13T22:09:44,477 changing mode of build/scripts-3.11/rna_mq_farna.py from 644 to 755 2026-03-13T22:09:44,478 changing mode of build/scripts-3.11/rna_mq_farfar2.py from 644 to 755 2026-03-13T22:09:44,479 changing mode of build/scripts-3.11/rna_mq_simrna.py from 644 to 755 2026-03-13T22:09:44,479 changing mode of build/scripts-3.11/rna_mq_rasp.py from 644 to 755 2026-03-13T22:09:44,480 changing mode of build/scripts-3.11/rna_gromacs_ready.py from 644 to 755 2026-03-13T22:09:44,481 changing mode of build/scripts-3.11/rna_md.py from 644 to 755 2026-03-13T22:09:44,481 changing mode of build/scripts-3.11/rna_minimize.py from 644 to 755 2026-03-13T22:09:44,482 changing mode of build/scripts-3.11/rna_traj_n.py from 644 to 755 2026-03-13T22:09:44,483 changing mode of build/scripts-3.11/rna_traj_range.py from 644 to 755 2026-03-13T22:09:44,484 changing mode of build/scripts-3.11/rna_traj_nohetm.py from 644 to 755 2026-03-13T22:09:44,485 changing mode of build/scripts-3.11/triplexibility.py from 644 to 755 2026-03-13T22:09:44,485 changing mode of build/scripts-3.11/triplexibility2.py from 644 to 755 2026-03-13T22:09:44,486 changing mode of build/scripts-3.11/trx_mutagen_allvsall.py from 644 to 755 2026-03-13T22:09:44,486 changing mode of build/scripts-3.11/trx_mutagen.py from 644 to 755 2026-03-13T22:09:44,487 changing mode of build/scripts-3.11/trx_score_allvsall.py from 644 to 755 2026-03-13T22:09:44,488 changing mode of build/scripts-3.11/trx_score.py from 644 to 755 2026-03-13T22:09:44,488 changing mode of build/scripts-3.11/trx_score_onCol.py from 644 to 755 2026-03-13T22:09:44,489 changing mode of build/scripts-3.11/rna_df_csv_sort.py from 644 to 755 2026-03-13T22:09:44,490 changing mode of build/scripts-3.11/rna_df_concat.py from 644 to 755 2026-03-13T22:09:44,490 changing mode of build/scripts-3.11/rna_df_merge.py from 644 to 755 2026-03-13T22:09:44,491 changing mode of build/scripts-3.11/rna_df_merge_on.py from 644 to 755 2026-03-13T22:09:44,492 changing mode of build/scripts-3.11/rna_df_merge_two.py from 644 to 755 2026-03-13T22:09:44,492 changing mode of build/scripts-3.11/rna_ok_mail.py from 644 to 755 2026-03-13T22:09:44,493 changing mode of build/scripts-3.11/rna_test_cuda.py from 644 to 755 2026-03-13T22:09:44,494 changing mode of build/scripts-3.11/rna_draw_edges.py from 644 to 755 2026-03-13T22:09:44,494 changing mode of build/scripts-3.11/rna_calc_hbonds.py from 644 to 755 2026-03-13T22:09:44,495 changing mode of build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py from 644 to 755 2026-03-13T22:09:44,495 changing mode of build/scripts-3.11/rna_clarna2graph.py from 644 to 755 2026-03-13T22:09:44,496 changing mode of build/scripts-3.11/rna_openfold_json_to_cif.py from 644 to 755 2026-03-13T22:09:44,496 installing to build/bdist.linux-armv7l/wheel 2026-03-13T22:09:44,496 running install 2026-03-13T22:09:44,517 running install_lib 2026-03-13T22:09:44,527 creating build/bdist.linux-armv7l 2026-03-13T22:09:44,527 creating build/bdist.linux-armv7l/wheel 2026-03-13T22:09:44,529 creating build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:09:44,530 copying build/lib/tests/__init__.py -> build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:09:44,532 copying build/lib/tests/test_module.py -> build/bdist.linux-armv7l/wheel/tests 2026-03-13T22:09:44,534 creating build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,535 copying build/lib/rna_tools/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,537 copying build/lib/rna_tools/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,539 copying build/lib/rna_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,541 copying build/lib/rna_tools/rna_tools_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,545 copying build/lib/rna_tools/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,547 copying build/lib/rna_tools/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,549 copying build/lib/rna_tools/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,558 copying build/lib/rna_tools/Seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,560 copying build/lib/rna_tools/RfamSearch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,562 copying build/lib/rna_tools/stats.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,564 copying build/lib/rna_tools/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,567 creating build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,568 copying build/lib/rna_tools/tests/test_seq_cyclefold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,570 copying build/lib/rna_tools/tests/test_seq_mcfold2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,572 copying build/lib/rna_tools/tests/test_seq_mcfold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,574 copying build/lib/rna_tools/tests/test_eval.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,577 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:09:44,578 copying build/lib/rna_tools/tests/test_import_module/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:09:44,582 copying build/lib/rna_tools/tests/test_import_module/test_import_rna_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module 2026-03-13T22:09:44,584 creating build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-03-13T22:09:44,586 copying build/lib/rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tests/test_import_module/test_data 2026-03-13T22:09:44,588 copying build/lib/rna_tools/tests/test_rnafold.py -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,590 copying build/lib/rna_tools/tests/test_rna_ss_pred.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tests 2026-03-13T22:09:44,592 copying build/lib/rna_tools/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:44,595 creating build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-03-13T22:09:44,596 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,597 copying build/lib/rna_tools/tools/rna_calc_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,599 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,602 copying build/lib/rna_tools/tools/rna_calc_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,604 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:09:44,605 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib 2026-03-13T22:09:44,607 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,608 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,610 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,612 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,613 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,616 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,619 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,620 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/3ci2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,623 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/1ypa.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,626 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_translate.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,627 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,630 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_mini.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,632 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples/ethane_bond.xyz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd/examples 2026-03-13T22:09:44,634 copying build/lib/rna_tools/tools/rna_calc_rmsd/lib/rmsd/calculate_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/lib/rmsd 2026-03-13T22:09:44,636 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,638 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,640 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,643 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:44,644 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:44,646 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_output/pistol_rmsd_name-rmsd-column.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_output 2026-03-13T22:09:44,648 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,651 copying build/lib/rna_tools/tools/rna_calc_rmsd/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,653 copying build/lib/rna_tools/tools/rna_calc_rmsd/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd 2026-03-13T22:09:44,657 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,657 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,659 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,663 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,665 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,670 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,673 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_align.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,675 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,676 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_bases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,678 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_100.pdb_rpr.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,682 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_addh_MD_1_rpr_rchain.pdb_fixChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,686 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/backbone+sugar.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,688 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,690 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/yC_5LJ3_U2U6_core_mdrFx_onlyTriplex_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,692 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,694 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/ways/rmsd_c1p.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/ways 2026-03-13T22:09:44,696 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,698 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,700 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,702 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:09:44,704 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:44,705 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:44,708 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust02-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:44,712 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:44,718 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters/pistol_thrs0.50A_clust03-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol/clusters 2026-03-13T22:09:44,722 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/pistol/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/pistol 2026-03-13T22:09:44,729 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets 2026-03-13T22:09:44,731 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:44,732 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:44,736 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:44,740 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,740 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,744 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_1_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,747 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,751 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,755 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions/21_solution_0_ChainA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/solutions 2026-03-13T22:09:44,759 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:44,763 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp21 2026-03-13T22:09:44,767 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:44,768 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:44,777 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7_solution_0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:44,785 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:44,786 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Ding_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:44,793 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models/7_Major_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/models 2026-03-13T22:09:44,804 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7/7.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/multi-targets/rp7 2026-03-13T22:09:44,805 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rmsd_calc_dir_to_target_fit.tsv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,807 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_1_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,809 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/struc2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,813 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/21_solution_0_ChainB.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,815 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/plot.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,820 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,820 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,830 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,872 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_294.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,881 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/3jbv_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,925 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/rRNA_3jbv_A_PrepCaching_geo0_dmb20.0_fcd20.0_gpu1_cpu4_eblk24_blk4_bba1_Pem_rosettaViol0_bbbl0_ga1_n100_s49_df3-18b-fasr_one_prep_pred_3jbv_A_250_3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,934 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/crops/seqs.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data/crops 2026-03-13T22:09:44,936 copying build/lib/rna_tools/tools/rna_calc_rmsd/test_data/rna_calc_rmsd_multi_targets_output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd/test_data 2026-03-13T22:09:44,939 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,940 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,942 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,944 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAalignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,947 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,949 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,952 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,953 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,956 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/evoclust_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,957 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/RNAmodel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd 2026-03-13T22:09:44,960 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,961 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,963 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qlm_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,969 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,971 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna_no_selector.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,972 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/6Y2L_2_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,977 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/1ehz_std.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,982 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/aln_nox.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,984 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/trna.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,986 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/4qk8_cl.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,993 copying build/lib/rna_tools/tools/rna_calc_evo_rmsd/test_data/mapping.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_evo_rmsd/test_data 2026-03-13T22:09:44,996 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:44,997 copying build/lib/rna_tools/tools/rna_rosetta/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:44,999 copying build/lib/rna_tools/tools/rna_rosetta/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,001 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,003 copying build/lib/rna_tools/tools/rna_rosetta/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,004 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,006 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,008 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,011 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,013 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,015 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,017 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,019 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_easy_cat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,021 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,023 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,025 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,027 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,028 copying build/lib/rna_tools/tools/rna_rosetta/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,030 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand5.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,037 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000027_058.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,040 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,047 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a99.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,049 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000035_003.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,052 copying build/lib/rna_tools/tools/rna_rosetta/test_data/silent_sort.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,056 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000005_032.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,060 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,061 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,063 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/qsubMINI -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,065 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,066 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/CMDLINES -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,068 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,070 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.params -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,072 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/input.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,074 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/tl.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,076 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,077 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tl/helix0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data/tl 2026-03-13T22:09:45,091 copying build/lib/rna_tools/tools/rna_rosetta/test_data/S_000020_024.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,094 copying build/lib/rna_tools/tools/rna_rosetta/test_data/tetraloop.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,096 copying build/lib/rna_tools/tools/rna_rosetta/test_data/selected.out.rand2.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,099 copying build/lib/rna_tools/tools/rna_rosetta/test_data/a04.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta/test_data 2026-03-13T22:09:45,101 copying build/lib/rna_tools/tools/rna_rosetta/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,103 copying build/lib/rna_tools/tools/rna_rosetta/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rosetta 2026-03-13T22:09:45,106 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,106 copying build/lib/rna_tools/tools/mq/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,108 copying build/lib/rna_tools/tools/mq/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,111 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:09:45,111 copying build/lib/rna_tools/tools/mq/FARNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:09:45,113 copying build/lib/rna_tools/tools/mq/FARNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:09:45,115 copying build/lib/rna_tools/tools/mq/FARNA/FARNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:09:45,118 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:45,118 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1xjrA_rna_mq_collect_FARNA_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:45,121 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_collect_FARNA_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:45,122 copying build/lib/rna_tools/tools/mq/FARNA/test_output/1y26X_output4_01-000001_AA.pdb_rna_mq_farna_lores.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA/test_output 2026-03-13T22:09:45,124 copying build/lib/rna_tools/tools/mq/FARNA/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARNA 2026-03-13T22:09:45,126 copying build/lib/rna_tools/tools/mq/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,128 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp 2026-03-13T22:09:45,130 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:09:45,131 copying build/lib/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx/configfile.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/tmp/yC_5LJ3_U2U6_core_1st_triplex_6-61A_2-21U_refx 2026-03-13T22:09:45,134 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,135 copying build/lib/rna_tools/tools/mq/test/1xjrA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,138 copying build/lib/rna_tools/tools/mq/test/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,144 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsOneChain.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,147 copying build/lib/rna_tools/tools/mq/test/1zhoH.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,151 copying build/lib/rna_tools/tools/mq/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,154 copying build/lib/rna_tools/tools/mq/test/1y26X_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,158 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,161 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,163 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChainsAB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,165 copying build/lib/rna_tools/tools/mq/test/dfire.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,167 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_x4chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,170 copying build/lib/rna_tools/tools/mq/test/1xjrA_output4_04-000056_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,173 copying build/lib/rna_tools/tools/mq/test/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,176 copying build/lib/rna_tools/tools/mq/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,180 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr_SwapChains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,183 copying build/lib/rna_tools/tools/mq/test/2pcw_1_2chains.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,187 copying build/lib/rna_tools/tools/mq/test/gcu-t1_yCs_5MPS.pdb2-21g-6-61c+80u-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,190 copying build/lib/rna_tools/tools/mq/test/1msy_output4_01-000001_AA_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,194 copying build/lib/rna_tools/tools/mq/test/ggg-t1_yCs_5MPS.pdb2-21g-6-61g+80g-rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,197 copying build/lib/rna_tools/tools/mq/test/all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,200 copying build/lib/rna_tools/tools/mq/test/test2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,204 copying build/lib/rna_tools/tools/mq/test/1xjrA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,208 copying build/lib/rna_tools/tools/mq/test/3e5f_output4_01-000001_AA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/test 2026-03-13T22:09:45,213 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:45,214 copying build/lib/rna_tools/tools/mq/eSCORE/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:45,217 copying build/lib/rna_tools/tools/mq/eSCORE/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:45,219 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:09:45,221 copying build/lib/rna_tools/tools/mq/eSCORE/test/escore.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE/test 2026-03-13T22:09:45,223 copying build/lib/rna_tools/tools/mq/eSCORE/eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:45,226 copying build/lib/rna_tools/tools/mq/eSCORE/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/eSCORE 2026-03-13T22:09:45,228 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-03-13T22:09:45,230 copying build/lib/rna_tools/tools/mq/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib 2026-03-13T22:09:45,232 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,234 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,236 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/shellgraphics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,239 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,242 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/output.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,244 copying build/lib/rna_tools/tools/mq/lib/shellgraphics/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/shellgraphics 2026-03-13T22:09:45,247 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,248 copying build/lib/rna_tools/tools/mq/lib/timex/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,251 copying build/lib/rna_tools/tools/mq/lib/timex/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,253 copying build/lib/rna_tools/tools/mq/lib/timex/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,257 copying build/lib/rna_tools/tools/mq/lib/timex/timex.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,259 copying build/lib/rna_tools/tools/mq/lib/timex/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/timex 2026-03-13T22:09:45,262 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:45,263 copying build/lib/rna_tools/tools/mq/lib/wrappers/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:45,266 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:45,267 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:45,269 copying build/lib/rna_tools/tools/mq/lib/wrappers/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers/test 2026-03-13T22:09:45,272 copying build/lib/rna_tools/tools/mq/lib/wrappers/base_wrappers.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:45,275 copying build/lib/rna_tools/tools/mq/lib/wrappers/SubprocessUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:45,278 copying build/lib/rna_tools/tools/mq/lib/wrappers/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/lib/wrappers 2026-03-13T22:09:45,281 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:45,282 copying build/lib/rna_tools/tools/mq/RNAscore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:45,284 copying build/lib/rna_tools/tools/mq/RNAscore/RNAscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAscore 2026-03-13T22:09:45,286 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:45,288 copying build/lib/rna_tools/tools/mq/rsRNASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:45,290 copying build/lib/rna_tools/tools/mq/rsRNASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:45,292 copying build/lib/rna_tools/tools/mq/rsRNASP/rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:45,294 copying build/lib/rna_tools/tools/mq/rsRNASP/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/rsRNASP 2026-03-13T22:09:45,295 copying build/lib/rna_tools/tools/mq/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,298 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:45,298 copying build/lib/rna_tools/tools/mq/ClashScore/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:45,300 copying build/lib/rna_tools/tools/mq/ClashScore/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:45,302 copying build/lib/rna_tools/tools/mq/ClashScore/ClashScore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:45,303 copying build/lib/rna_tools/tools/mq/ClashScore/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/ClashScore 2026-03-13T22:09:45,305 copying build/lib/rna_tools/tools/mq/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,308 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,309 copying build/lib/rna_tools/tools/mq/RASP/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,312 copying build/lib/rna_tools/tools/mq/RASP/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,314 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,315 copying build/lib/rna_tools/tools/mq/RASP/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,317 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_4_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,321 copying build/lib/rna_tools/tools/mq/RASP/test/test_sorted_rasp_all.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,323 copying build/lib/rna_tools/tools/mq/RASP/test/test.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,325 copying build/lib/rna_tools/tools/mq/RASP/test/17_Bujnicki_7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,330 copying build/lib/rna_tools/tools/mq/RASP/test/mq.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,333 copying build/lib/rna_tools/tools/mq/RASP/test/17_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,338 copying build/lib/rna_tools/tools/mq/RASP/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP/test 2026-03-13T22:09:45,341 copying build/lib/rna_tools/tools/mq/RASP/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,343 copying build/lib/rna_tools/tools/mq/RASP/RASP.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,345 copying build/lib/rna_tools/tools/mq/RASP/rasp_for_pymol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,347 copying build/lib/rna_tools/tools/mq/RASP/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RASP 2026-03-13T22:09:45,349 copying build/lib/rna_tools/tools/mq/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,352 copying build/lib/rna_tools/tools/mq/rna_mq_collect_tqdm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,355 copying build/lib/rna_tools/tools/mq/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,357 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:45,358 copying build/lib/rna_tools/tools/mq/QRNAS/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:45,360 copying build/lib/rna_tools/tools/mq/QRNAS/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:45,362 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,363 copying build/lib/rna_tools/tools/mq/QRNAS/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,365 copying build/lib/rna_tools/tools/mq/QRNAS/test/1a9n.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,369 copying build/lib/rna_tools/tools/mq/QRNAS/test/unmod_Val3_tRNA_model_si.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,373 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,375 copying build/lib/rna_tools/tools/mq/QRNAS/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS/test 2026-03-13T22:09:45,377 copying build/lib/rna_tools/tools/mq/QRNAS/QRNAS.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/QRNAS 2026-03-13T22:09:45,379 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,380 copying build/lib/rna_tools/tools/mq/Dfire/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,382 copying build/lib/rna_tools/tools/mq/Dfire/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,383 copying build/lib/rna_tools/tools/mq/Dfire/Dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,385 copying build/lib/rna_tools/tools/mq/Dfire/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,387 copying build/lib/rna_tools/tools/mq/Dfire/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/Dfire 2026-03-13T22:09:45,389 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:45,390 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:45,392 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:45,394 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/AnalyzeGeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:45,396 copying build/lib/rna_tools/tools/mq/AnalyzeGeometry/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/AnalyzeGeometry 2026-03-13T22:09:45,398 copying build/lib/rna_tools/tools/mq/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,400 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,401 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,403 copying build/lib/rna_tools/tools/mq/RNA3DCNN/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,405 copying build/lib/rna_tools/tools/mq/RNA3DCNN/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,407 copying build/lib/rna_tools/tools/mq/RNA3DCNN/test.output -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,409 copying build/lib/rna_tools/tools/mq/RNA3DCNN/RNA3DCNN.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNA3DCNN 2026-03-13T22:09:45,411 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:45,413 copying build/lib/rna_tools/tools/mq/RNAkb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:45,415 copying build/lib/rna_tools/tools/mq/RNAkb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:45,416 copying build/lib/rna_tools/tools/mq/RNAkb/RNAkb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:45,419 copying build/lib/rna_tools/tools/mq/RNAkb/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb 2026-03-13T22:09:45,421 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,422 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,426 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,428 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,430 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,433 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,436 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/333d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,439 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,441 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1msy_nt1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,444 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1z58.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,515 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1ykq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,519 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,522 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,525 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,527 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,531 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/1dqf_noCA+ResnShift.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,534 copying build/lib/rna_tools/tools/mq/RNAkb/test_data/434d.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/RNAkb/test_data 2026-03-13T22:09:45,536 copying build/lib/rna_tools/tools/mq/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq 2026-03-13T22:09:45,539 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:45,540 copying build/lib/rna_tools/tools/mq/FARFAR2/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:45,543 copying build/lib/rna_tools/tools/mq/FARFAR2/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:45,545 copying build/lib/rna_tools/tools/mq/FARFAR2/FARFAR2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:45,547 copying build/lib/rna_tools/tools/mq/FARFAR2/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2 2026-03-13T22:09:45,551 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,552 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,555 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,557 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/.python-version -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,559 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_hires_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,561 copying build/lib/rna_tools/tools/mq/FARFAR2/test_output/ff2_rna_mq_collect.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/FARFAR2/test_output 2026-03-13T22:09:45,564 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:45,565 copying build/lib/rna_tools/tools/mq/SimRNA/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:45,567 copying build/lib/rna_tools/tools/mq/SimRNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:45,570 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:45,571 copying build/lib/rna_tools/tools/mq/SimRNA/test/output.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:45,573 copying build/lib/rna_tools/tools/mq/SimRNA/test/1duq_clx_decoy4_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:45,577 copying build/lib/rna_tools/tools/mq/SimRNA/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA/test 2026-03-13T22:09:45,579 copying build/lib/rna_tools/tools/mq/SimRNA/SimRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:45,582 copying build/lib/rna_tools/tools/mq/SimRNA/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mq/SimRNA 2026-03-13T22:09:45,585 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,586 copying build/lib/rna_tools/tools/clarna_play/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,589 copying build/lib/rna_tools/tools/clarna_play/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,591 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-03-13T22:09:45,593 copying build/lib/rna_tools/tools/clarna_play/lib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib 2026-03-13T22:09:45,596 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:45,597 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:45,600 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/rna-pdb-tools.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:45,602 copying build/lib/rna_tools/tools/clarna_play/lib/rna_pdb_tools/pdb_parser_lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/rna_pdb_tools 2026-03-13T22:09:45,606 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:45,607 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:45,610 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/ClaRNAwd_output_parser.h -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:45,613 copying build/lib/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS/Makefile -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/lib/ClaRNAwd_to_vienaSS 2026-03-13T22:09:45,616 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,617 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,619 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,621 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/normalize_pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,624 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,625 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other3.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,648 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-ribose.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,687 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.base-phosphate.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,726 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other2.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,728 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.other.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,736 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.bp.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,819 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/lib/classifier.stacking.json.gz -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib/lib 2026-03-13T22:09:45,917 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,920 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,922 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,925 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/structure_ciach.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,927 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,930 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/descriptions-dict.json -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,934 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,936 copying build/lib/rna_tools/tools/clarna_play/ClaRNAlib/cl_settings_global.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/ClaRNAlib 2026-03-13T22:09:45,938 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,941 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:45,943 copying build/lib/rna_tools/tools/clarna_play/tests/1evv_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:45,947 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M15.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:45,951 copying build/lib/rna_tools/tools/clarna_play/tests/3e5fA_M500.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/tests 2026-03-13T22:09:45,955 copying build/lib/rna_tools/tools/clarna_play/PDBSeq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,958 copying build/lib/rna_tools/tools/clarna_play/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,961 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-03-13T22:09:45,962 copying build/lib/rna_tools/tools/clarna_play/docs/clarna_run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/docs 2026-03-13T22:09:45,965 copying build/lib/rna_tools/tools/clarna_play/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play 2026-03-13T22:09:45,968 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:45,969 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M15_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:45,971 copying build/lib/rna_tools/tools/clarna_play/test_output/3e5fA_M500_c.pdb.outCR -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_output 2026-03-13T22:09:45,973 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,974 copying build/lib/rna_tools/tools/clarna_play/test_data/1kxk_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,978 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,984 copying build/lib/rna_tools/tools/clarna_play/test_data/ss.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,986 copying build/lib/rna_tools/tools/clarna_play/test_data/1a51_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,989 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M500_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,993 copying build/lib/rna_tools/tools/clarna_play/test_data/1q9a_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,996 copying build/lib/rna_tools/tools/clarna_play/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_AB.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:45,999 copying build/lib/rna_tools/tools/clarna_play/test_data/2a43_00_A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:46,002 copying build/lib/rna_tools/tools/clarna_play/test_data/3e5fA_M15_c.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_play/test_data 2026-03-13T22:09:46,006 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:09:46,007 copying build/lib/rna_tools/tools/rna_refinement/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:09:46,009 copying build/lib/rna_tools/tools/rna_refinement/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:09:46,011 copying build/lib/rna_tools/tools/rna_refinement/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:09:46,014 copying build/lib/rna_tools/tools/rna_refinement/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement 2026-03-13T22:09:46,016 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,017 copying build/lib/rna_tools/tools/rna_refinement/test_data/output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,023 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,028 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001_refx.pdb_thrs0.50A_clust99-000001_AA_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,034 copying build/lib/rna_tools/tools/rna_refinement/test_data/179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,038 copying build/lib/rna_tools/tools/rna_refinement/test_data/19_Bujnicki_Human_4_rpr_n0-000001.pdb_thrs0.50A_clust99-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,041 copying build/lib/rna_tools/tools/rna_refinement/test_data/input_refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,047 copying build/lib/rna_tools/tools/rna_refinement/test_data/input.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,051 copying build/lib/rna_tools/tools/rna_refinement/test_data/rp17_179c48aa-c0d3-4bd6-8e06-12081da22998_ALL_thrs6.20A_clust01-000001_AA._refx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_refinement/test_data 2026-03-13T22:09:46,056 copying build/lib/rna_tools/tools/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools 2026-03-13T22:09:46,058 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:46,059 copying build/lib/rna_tools/tools/mini_moderna3/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:46,061 copying build/lib/rna_tools/tools/mini_moderna3/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:46,064 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,065 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,067 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Template.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,069 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,072 copying build/lib/rna_tools/tools/mini_moderna3/moderna/_version.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,074 copying build/lib/rna_tools/tools/mini_moderna3/moderna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,077 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,078 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,080 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/Errors.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,082 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/decorators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,084 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/validators.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,086 copying build/lib/rna_tools/tools/mini_moderna3/moderna/util/LogFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/util 2026-03-13T22:09:46,088 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:46,090 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:46,091 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericModelling.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:46,093 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/Isostericity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:46,096 copying build/lib/rna_tools/tools/mini_moderna3/moderna/isosteric/IsostericityMatrices.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/isosteric 2026-03-13T22:09:46,098 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,100 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,103 copying build/lib/rna_tools/tools/mini_moderna3/moderna/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,106 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,107 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,109 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ResidueEditor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,111 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/BaseExchanger.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,113 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModifyResidue.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,115 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationAdder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,117 copying build/lib/rna_tools/tools/mini_moderna3/moderna/modifications/ModificationRemover.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/modifications 2026-03-13T22:09:46,120 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,121 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/CoordBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,123 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,125 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/FCCDLoopCloser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,127 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/ChiRotator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,129 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/BackboneBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,132 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,134 copying build/lib/rna_tools/tools/mini_moderna3/moderna/builder/PhosphateBuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/builder 2026-03-13T22:09:46,136 copying build/lib/rna_tools/tools/mini_moderna3/moderna/moderna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,139 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,140 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryStatistics.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,143 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolGraphParser.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,146 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,147 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,150 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryAnalyzer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,152 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolecularGraph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,154 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ChainConnectivity.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,156 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/ClashRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,159 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/MolTopologies.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,162 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/HBondCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,165 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/GeometryParameters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,167 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,169 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/PuckerCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,171 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,174 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/BaseRecognizer.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,177 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,178 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,181 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,183 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite_clusters.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,186 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,188 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,191 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suite.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,193 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_SuiteCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,196 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_suitename.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,199 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:46,200 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/ah0001Ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:46,203 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1JZC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:46,206 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/arhb90H.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:46,209 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data/1WTS.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites/test_data 2026-03-13T22:09:46,212 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/suites/dihedral_bins.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze/suites 2026-03-13T22:09:46,214 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/StackingCalculator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,216 copying build/lib/rna_tools/tools/mini_moderna3/moderna/analyze/RNASuites.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/analyze 2026-03-13T22:09:46,218 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Renumerator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,221 copying build/lib/rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,223 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,224 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,226 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/RNAAlignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,228 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/commands.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,230 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaSequence.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,233 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/AlignmentMatcher.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,235 copying build/lib/rna_tools/tools/mini_moderna3/moderna/sequence/ModernaAlphabet.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/sequence 2026-03-13T22:09:46,238 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,239 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,241 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/SearchLIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,244 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/StructureLibrary.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,246 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIRdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,248 copying build/lib/rna_tools/tools/mini_moderna3/moderna/fragment_library/LIR.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/fragment_library 2026-03-13T22:09:46,251 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Constants.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,253 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,255 copying build/lib/rna_tools/tools/mini_moderna3/moderna/Helix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,258 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAModel.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,261 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:46,262 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:46,263 copying build/lib/rna_tools/tools/mini_moderna3/moderna/examples/usage_examples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/examples 2026-03-13T22:09:46,266 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,267 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,272 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,277 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,279 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,281 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,283 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,285 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,287 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,289 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,291 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,293 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,295 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,297 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,300 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,301 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,303 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,305 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,307 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,309 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,311 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,313 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,315 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,317 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,319 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,321 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,323 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,325 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,327 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,330 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,332 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,334 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,336 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,338 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,340 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,342 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,344 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,346 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,348 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,350 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,352 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,354 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,356 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,357 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,359 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,361 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,363 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,365 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,367 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,369 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,371 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,373 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,375 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,377 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,380 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,382 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,384 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,386 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,388 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,390 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,392 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,394 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,395 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,397 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,399 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,401 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,403 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,405 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,407 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,409 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,412 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,413 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,415 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,417 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,420 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,422 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,424 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,425 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,427 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,429 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,431 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,433 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,435 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,437 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,439 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,441 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,443 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,445 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,447 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,449 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,451 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,453 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,455 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,457 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,459 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,461 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,463 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,465 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,467 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s55_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking 2026-03-13T22:09:46,469 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,471 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,473 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,474 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,476 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,479 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,481 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,483 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,485 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,487 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,489 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/Rib_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,491 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,493 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bifa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,495 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,498 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,500 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,502 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,504 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,506 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,508 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,510 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,512 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,514 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,516 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,518 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,520 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,523 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,525 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,527 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,528 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,530 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,532 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,535 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,537 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,539 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,541 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,544 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,546 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,548 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,550 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,552 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,554 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,556 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,558 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,560 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,562 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,564 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,566 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,568 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,570 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,572 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,574 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,576 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,578 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,580 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/----_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,582 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,585 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,587 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,589 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,591 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,593 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,595 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,597 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,599 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,601 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,603 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,605 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,607 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,609 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,611 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,613 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,615 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,617 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,620 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,622 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,624 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,626 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,628 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,631 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSSa_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,633 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,635 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,637 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,639 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,641 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,643 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,645 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,647 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,649 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,651 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,653 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,655 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,657 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,659 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,662 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,664 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,666 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,668 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,669 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,672 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,674 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,676 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,677 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,680 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,681 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,683 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,685 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,687 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,689 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,691 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,694 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,697 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,699 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,702 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,705 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,707 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,710 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cSS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,713 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,716 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,718 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,721 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,723 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,726 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHSa_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,729 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,731 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,734 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,737 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,739 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,742 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,744 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,747 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/bif_GU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,750 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,752 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,755 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,757 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_AU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,760 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,762 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,765 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,768 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cHH_GG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/base_pairs 2026-03-13T22:09:46,771 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_names_table -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,774 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/single_strand.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,778 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/all_atom_names -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,782 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modifications -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,785 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/B_DNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,790 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_topologies.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,793 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/phosphate_group.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,797 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,798 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_oQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,801 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,803 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m5D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,805 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_acp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,808 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,811 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_s.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,813 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,815 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5C7C8_arch.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,818 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW_star.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,820 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,822 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_gluQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,825 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_galQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,827 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,830 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C6N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,833 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,836 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_D.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,838 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1acp3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,841 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_t.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,843 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_se.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,846 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m1Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,849 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N1C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,851 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m3Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,854 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_f.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,856 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,859 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,861 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,863 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_io.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,866 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,868 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_k.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,870 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,873 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C5N7C8_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,875 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_r_P.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,878 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,880 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_QtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,883 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_ohyW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,885 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_oh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,888 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_sm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,891 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,893 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_O.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,896 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/ribose_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,898 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnmc.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,901 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,903 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,905 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_N2_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,907 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,910 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_g.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,912 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N3_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,915 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,917 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mhcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,919 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ0tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,922 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_manQtRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,924 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4N9C8_preQ1tRNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,926 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mnm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,928 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_C7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,931 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,933 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_o2yW.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,935 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_ac.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,937 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_Y.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,939 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_hn.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,942 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p_O2p_rp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,944 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_mh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,946 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C2N3C4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,948 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_om.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,951 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_mi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,953 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C2N2_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,955 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N1C6C5_N6_i.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,958 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/N3C4C5_N4_m.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,960 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C4C5C6_omcm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,962 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/1wts_N1C6C5_N6_mm.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,965 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments/C1pC2pC3p.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/modification_fragments 2026-03-13T22:09:46,967 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/suite_clusters.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,969 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/pair_fragment.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,972 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/rnaDB05_list_without_tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,974 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,975 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/P_atom.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,978 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/U.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,980 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/A.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,982 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/G.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,985 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/standard_bases/C.ent -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data/standard_bases 2026-03-13T22:09:46,987 copying build/lib/rna_tools/tools/mini_moderna3/moderna/data/IsostericityMatrices.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna/data 2026-03-13T22:09:46,990 copying build/lib/rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,993 copying build/lib/rna_tools/tools/mini_moderna3/moderna/PdbConverter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,996 copying build/lib/rna_tools/tools/mini_moderna3/moderna/RNAChain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:46,999 copying build/lib/rna_tools/tools/mini_moderna3/moderna/CheckPdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3/moderna 2026-03-13T22:09:47,002 copying build/lib/rna_tools/tools/mini_moderna3/AUTHORS.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,005 copying build/lib/rna_tools/tools/mini_moderna3/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,007 copying build/lib/rna_tools/tools/mini_moderna3/COPYING -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,011 copying build/lib/rna_tools/tools/mini_moderna3/MANIFEST.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,013 copying build/lib/rna_tools/tools/mini_moderna3/.travis.yml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,015 copying build/lib/rna_tools/tools/mini_moderna3/.coveragerc -> build/bdist.linux-armv7l/wheel/rna_tools/tools/mini_moderna3 2026-03-13T22:09:47,017 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:47,018 copying build/lib/rna_tools/tools/rnapuzzle_sender/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:47,021 copying build/lib/rna_tools/tools/rnapuzzle_sender/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:47,023 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,024 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,030 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,066 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/model1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,073 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,110 copying build/lib/rna_tools/tools/rnapuzzle_sender/test_of_email_content/test3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/test_of_email_content 2026-03-13T22:09:47,117 copying build/lib/rna_tools/tools/rnapuzzle_sender/rnapuzzle_sender.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender 2026-03-13T22:09:47,120 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,121 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank9.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,127 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank10.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,132 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,136 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank7.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,141 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank6.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,145 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,151 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,158 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank8.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,164 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank3.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,171 copying build/lib/rna_tools/tools/rnapuzzle_sender/files/DASLAB_Problem13_Rank5.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnapuzzle_sender/files 2026-03-13T22:09:47,178 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:47,180 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:47,182 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:47,184 copying build/lib/rna_tools/tools/rna_calc_rmsd_trafl/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_rmsd_trafl 2026-03-13T22:09:47,188 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:47,189 copying build/lib/rna_tools/tools/rna_helix_vis/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:47,192 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:09:47,193 copying build/lib/rna_tools/tools/rna_helix_vis/doc/rna_helix_vis.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/doc 2026-03-13T22:09:47,201 copying build/lib/rna_tools/tools/rna_helix_vis/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:47,203 copying build/lib/rna_tools/tools/rna_helix_vis/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis 2026-03-13T22:09:47,206 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:47,207 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:47,210 copying build/lib/rna_tools/tools/rna_helix_vis/test_data/rp14_farna_eloop.out.1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_helix_vis/test_data 2026-03-13T22:09:47,218 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,220 copying build/lib/rna_tools/tools/triplexibility/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,222 copying build/lib/rna_tools/tools/triplexibility/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,224 copying build/lib/rna_tools/tools/triplexibility/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,227 copying build/lib/rna_tools/tools/triplexibility/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,231 copying build/lib/rna_tools/tools/triplexibility/lib.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,234 copying build/lib/rna_tools/tools/triplexibility/triple-db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,242 copying build/lib/rna_tools/tools/triplexibility/download-all-triples.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,244 copying build/lib/rna_tools/tools/triplexibility/trx.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,246 copying build/lib/rna_tools/tools/triplexibility/process_triple.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,249 copying build/lib/rna_tools/tools/triplexibility/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,251 copying build/lib/rna_tools/tools/triplexibility/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,253 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,255 copying build/lib/rna_tools/tools/triplexibility/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,257 copying build/lib/rna_tools/tools/triplexibility/download-all-pdbs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,259 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-1.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,261 copying build/lib/rna_tools/tools/triplexibility/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,263 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-03-13T22:09:47,264 copying build/lib/rna_tools/tools/triplexibility/db/gendb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/db 2026-03-13T22:09:47,266 copying build/lib/rna_tools/tools/triplexibility/trx.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,269 copying build/lib/rna_tools/tools/triplexibility/trx-mutget-t1-2.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,271 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,273 copying build/lib/rna_tools/tools/triplexibility/test_all.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,275 copying build/lib/rna_tools/tools/triplexibility/trx_score_growth.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,278 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,280 copying build/lib/rna_tools/tools/triplexibility/trx_analysis.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,281 copying build/lib/rna_tools/tools/triplexibility/download-all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,283 copying build/lib/rna_tools/tools/triplexibility/splix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,286 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,287 copying build/lib/rna_tools/tools/triplexibility/data/db.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,289 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,291 copying build/lib/rna_tools/tools/triplexibility/data/t1-1-Triple_cWW_cHS_GCU_exemplar_rpr_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,294 copying build/lib/rna_tools/tools/triplexibility/data/cWW_cHS_GCU.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,296 copying build/lib/rna_tools/tools/triplexibility/data/XcWWX.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,298 copying build/lib/rna_tools/tools/triplexibility/data/db_trx2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility/data 2026-03-13T22:09:47,300 copying build/lib/rna_tools/tools/triplexibility/trx_score_onCol_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/triplexibility 2026-03-13T22:09:47,303 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,304 copying build/lib/rna_tools/tools/rna_binding_affinity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,306 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,308 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,310 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,312 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,314 copying build/lib/rna_tools/tools/rna_binding_affinity/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_binding_affinity 2026-03-13T22:09:47,317 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,318 copying build/lib/rna_tools/tools/rna_alignment/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,321 copying build/lib/rna_tools/tools/rna_alignment/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,323 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,325 copying build/lib/rna_tools/tools/rna_alignment/rna_align_mfa2sto.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,327 copying build/lib/rna_tools/tools/rna_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,329 copying build/lib/rna_tools/tools/rna_alignment/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,331 copying build/lib/rna_tools/tools/rna_alignment/rna_align_distance_to_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,333 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IE2.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,344 copying build/lib/rna_tools/tools/rna_alignment/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,346 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,348 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,463 copying build/lib/rna_tools/tools/rna_alignment/test_rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,466 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_IA1.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,474 copying build/lib/rna_tools/tools/rna_alignment/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,476 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:47,477 copying build/lib/rna_tools/tools/rna_alignment/pngs/rscape.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:47,480 copying build/lib/rna_tools/tools/rna_alignment/pngs/rchie.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/pngs 2026-03-13T22:09:47,484 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,487 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,488 copying build/lib/rna_tools/tools/rna_alignment/test_output/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,490 copying build/lib/rna_tools/tools/rna_alignment/test_output/mini.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,492 copying build/lib/rna_tools/tools/rna_alignment/test_output/plot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,495 copying build/lib/rna_tools/tools/rna_alignment/test_output/RF00167_subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,497 copying build/lib/rna_tools/tools/rna_alignment/test_output/out.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,500 copying build/lib/rna_tools/tools/rna_alignment/test_output/subset.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_output 2026-03-13T22:09:47,502 copying build/lib/rna_tools/tools/rna_alignment/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,504 copying build/lib/rna_tools/tools/rna_alignment/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,506 copying build/lib/rna_tools/tools/rna_alignment/rna_align_get_ss_from_fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,508 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,511 copying build/lib/rna_tools/tools/rna_alignment/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,513 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,514 copying build/lib/rna_tools/tools/rna_alignment/utils/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,516 copying build/lib/rna_tools/tools/rna_alignment/utils/mfa-get-seq-for-species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,518 copying build/lib/rna_tools/tools/rna_alignment/utils/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,520 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_merge_by_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,522 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,525 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,528 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_sto_remove_uniq_ids.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,530 copying build/lib/rna_tools/tools/rna_alignment/utils/R2R.cpp.readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,531 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,534 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_calc_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,536 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,539 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,540 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,542 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mutant_list.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,544 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/pustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,546 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/RF00026_demo.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,548 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela_format.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,550 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/u5_rfam_u5only.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,552 copying build/lib/rna_tools/tools/rna_alignment/utils/test_data/mustela.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils/test_data 2026-03-13T22:09:47,554 copying build/lib/rna_tools/tools/rna_alignment/utils/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/utils 2026-03-13T22:09:47,556 copying build/lib/rna_tools/tools/rna_alignment/rna_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,559 copying build/lib/rna_tools/tools/rna_alignment/test_rchie.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,562 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,563 copying build/lib/rna_tools/tools/rna_alignment/test_data/IA1.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,567 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,569 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,571 copying build/lib/rna_tools/tools/rna_alignment/test_data/IE2.gissd.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,575 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,577 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,579 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00167.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,582 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,583 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/bpseq.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,585 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/vienna.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,588 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/helix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,590 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/fasta.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,593 copying build/lib/rna_tools/tools/rna_alignment/test_data/rchie_test_files/connect.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/rchie_test_files 2026-03-13T22:09:47,595 copying build/lib/rna_tools/tools/rna_alignment/test_data/xx.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,597 copying build/lib/rna_tools/tools/rna_alignment/test_data/target.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,600 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv.seq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,602 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,606 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,608 copying build/lib/rna_tools/tools/rna_alignment/test_data/ade_gapped.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,610 copying build/lib/rna_tools/tools/rna_alignment/test_data/rfam_hit.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,612 copying build/lib/rna_tools/tools/rna_alignment/test_data/aln1_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,614 copying build/lib/rna_tools/tools/rna_alignment/test_data/u6_isl_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,618 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00001.blocked.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,624 copying build/lib/rna_tools/tools/rna_alignment/test_data/fasta.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,626 copying build/lib/rna_tools/tools/rna_alignment/test_data/af27.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,628 copying build/lib/rna_tools/tools/rna_alignment/test_data/gmp.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,630 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,633 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF02221.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,636 copying build/lib/rna_tools/tools/rna_alignment/test_data/xrrna_rfam.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,638 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.stockholm.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,641 copying build/lib/rna_tools/tools/rna_alignment/test_data/4lvv_RF01831_cmalign.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,643 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00002.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,646 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF00379.stockholm.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,649 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:09:47,650 copying build/lib/rna_tools/tools/rna_alignment/test_data/foldability/rp17_foldability.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data/foldability 2026-03-13T22:09:47,663 copying build/lib/rna_tools/tools/rna_alignment/test_data/RF01831.short.stk -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment/test_data 2026-03-13T22:09:47,665 copying build/lib/rna_tools/tools/rna_alignment/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_alignment 2026-03-13T22:09:47,668 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,669 copying build/lib/rna_tools/tools/plotting/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,671 copying build/lib/rna_tools/tools/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,673 copying build/lib/rna_tools/tools/plotting/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,675 copying build/lib/rna_tools/tools/plotting/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,677 copying build/lib/rna_tools/tools/plotting/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,679 copying build/lib/rna_tools/tools/plotting/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,681 copying build/lib/rna_tools/tools/plotting/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting 2026-03-13T22:09:47,684 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:09:47,685 copying build/lib/rna_tools/tools/plotting/test_data/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:09:47,687 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_hist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:09:47,690 copying build/lib/rna_tools/tools/plotting/test_data/rmsds_dens.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/plotting/test_data 2026-03-13T22:09:47,693 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:09:47,694 copying build/lib/rna_tools/tools/extra_functions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:09:47,696 copying build/lib/rna_tools/tools/extra_functions/select_fragment.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:09:47,698 copying build/lib/rna_tools/tools/extra_functions/numbering.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:09:47,700 copying build/lib/rna_tools/tools/extra_functions/gen_numbering.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/extra_functions 2026-03-13T22:09:47,702 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:47,703 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:47,705 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6 2026-03-13T22:09:47,707 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:47,708 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:47,710 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/db_nt_out.fasta -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:47,712 copying build/lib/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data/output_55 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_search_BLASTn_outfmt-6/test_data 2026-03-13T22:09:47,714 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:47,715 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:47,717 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:47,719 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments 2026-03-13T22:09:47,722 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:47,723 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_root.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:47,726 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/1xjr_simrna_nstep_1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:47,730 copying build/lib/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data/rna_sq_renumber.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_merge_structure_with_fragments/test_data 2026-03-13T22:09:47,734 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:09:47,735 copying build/lib/rna_tools/tools/ClashCalc/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:09:47,737 copying build/lib/rna_tools/tools/ClashCalc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:09:47,739 copying build/lib/rna_tools/tools/ClashCalc/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:09:47,740 copying build/lib/rna_tools/tools/ClashCalc/ClashCalc.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc 2026-03-13T22:09:47,743 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:47,744 copying build/lib/rna_tools/tools/ClashCalc/test_data/super_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:47,755 copying build/lib/rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:47,764 copying build/lib/rna_tools/tools/ClashCalc/test_data/no_clash.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/ClashCalc/test_data 2026-03-13T22:09:47,781 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,782 copying build/lib/rna_tools/tools/simrna_trajectory/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,784 copying build/lib/rna_tools/tools/simrna_trajectory/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,785 copying build/lib/rna_tools/tools/simrna_trajectory/simrna_trajectory.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,788 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,790 copying build/lib/rna_tools/tools/simrna_trajectory/test_rna_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,792 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,794 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_energy_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,796 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_subset.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,798 copying build/lib/rna_tools/tools/simrna_trajectory/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,800 copying build/lib/rna_tools/tools/simrna_trajectory/test_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,802 copying build/lib/rna_tools/tools/simrna_trajectory/subset.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory 2026-03-13T22:09:47,819 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:09:47,820 copying build/lib/rna_tools/tools/simrna_trajectory/test_data/mini.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/simrna_trajectory/test_data 2026-03-13T22:09:47,825 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:47,826 copying build/lib/rna_tools/tools/rna_sali2dotbracket/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:47,828 copying build/lib/rna_tools/tools/rna_sali2dotbracket/README.MD -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:47,830 copying build/lib/rna_tools/tools/rna_sali2dotbracket/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket 2026-03-13T22:09:47,832 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:47,833 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1_dotbracket.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:47,838 copying build/lib/rna_tools/tools/rna_sali2dotbracket/test_data/IA1.sali -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_sali2dotbracket/test_data 2026-03-13T22:09:47,844 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,845 copying build/lib/rna_tools/tools/md/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,848 copying build/lib/rna_tools/tools/md/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,850 copying build/lib/rna_tools/tools/md/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,852 copying build/lib/rna_tools/tools/md/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,854 copying build/lib/rna_tools/tools/md/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,856 copying build/lib/rna_tools/tools/md/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,858 copying build/lib/rna_tools/tools/md/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,861 copying build/lib/rna_tools/tools/md/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,863 copying build/lib/rna_tools/tools/md/out.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,866 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,868 copying build/lib/rna_tools/tools/md/test_output/1msy_output4_01-000001_AA_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,872 copying build/lib/rna_tools/tools/md/test_output/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,875 copying build/lib/rna_tools/tools/md/test_output/1duq_rpr_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,879 copying build/lib/rna_tools/tools/md/test_output/3nt_edited_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,881 copying build/lib/rna_tools/tools/md/test_output/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,885 copying build/lib/rna_tools/tools/md/test_output/1duq_rnakb_ready.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_output 2026-03-13T22:09:47,888 copying build/lib/rna_tools/tools/md/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,891 copying build/lib/rna_tools/tools/md/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,894 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-03-13T22:09:47,895 copying build/lib/rna_tools/tools/md/data/rnakb_all.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/data 2026-03-13T22:09:47,899 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,901 copying build/lib/rna_tools/tools/md/test_data/3nt_edited.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,904 copying build/lib/rna_tools/tools/md/test_data/1msy_output4_01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,908 copying build/lib/rna_tools/tools/md/test_data/temp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,911 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_noC.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,914 copying build/lib/rna_tools/tools/md/test_data/RA5_G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,917 copying build/lib/rna_tools/tools/md/test_data/groups.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,919 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,923 copying build/lib/rna_tools/tools/md/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clean_error_fx_rmPO.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,926 copying build/lib/rna_tools/tools/md/test_data/1duq_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,930 copying build/lib/rna_tools/tools/md/test_data/3nt.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,932 copying build/lib/rna_tools/tools/md/test_data/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,936 copying build/lib/rna_tools/tools/md/test_data/decoy0165_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,941 copying build/lib/rna_tools/tools/md/test_data/1duq -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md/test_data 2026-03-13T22:09:47,943 copying build/lib/rna_tools/tools/md/rna_get_energy.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,945 copying build/lib/rna_tools/tools/md/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,948 copying build/lib/rna_tools/tools/md/rnakb_utils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/md 2026-03-13T22:09:47,951 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:09:47,953 copying build/lib/rna_tools/tools/pymol_drawing/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:09:47,955 copying build/lib/rna_tools/tools/pymol_drawing/pymol_drawing.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:09:47,958 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:47,959 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_dist.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:47,964 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_vector.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:47,969 copying build/lib/rna_tools/tools/pymol_drawing/docs/draw_circle.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/docs 2026-03-13T22:09:47,972 copying build/lib/rna_tools/tools/pymol_drawing/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing 2026-03-13T22:09:47,975 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:09:47,976 copying build/lib/rna_tools/tools/pymol_drawing/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_drawing/test_data 2026-03-13T22:09:47,980 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:47,981 copying build/lib/rna_tools/tools/rna_calc_gdt/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:47,983 copying build/lib/rna_tools/tools/rna_calc_gdt/rna_calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_gdt 2026-03-13T22:09:47,986 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox 2026-03-13T22:09:47,988 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:47,989 copying build/lib/rna_tools/tools/sandbox/rna_compare/rmsds.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:47,992 copying build/lib/rna_tools/tools/sandbox/rna_compare/rna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare 2026-03-13T22:09:47,995 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:47,996 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/1y26_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:48,002 copying build/lib/rna_tools/tools/sandbox/rna_compare/test_data/ade_pk_82a6_100low-000006_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/sandbox/rna_compare/test_data 2026-03-13T22:09:48,008 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:09:48,009 copying build/lib/rna_tools/tools/rna_bp/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:09:48,011 copying build/lib/rna_tools/tools/rna_bp/base_pair.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_bp 2026-03-13T22:09:48,014 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,014 copying build/lib/rna_tools/tools/workflow/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,016 copying build/lib/rna_tools/tools/workflow/clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,018 copying build/lib/rna_tools/tools/workflow/rm_less_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,020 copying build/lib/rna_tools/tools/workflow/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,022 copying build/lib/rna_tools/tools/workflow/run -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,024 copying build/lib/rna_tools/tools/workflow/inf_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,026 copying build/lib/rna_tools/tools/workflow/mqaprna_run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,032 copying build/lib/rna_tools/tools/workflow/rm_csvs_smaller_than_2k.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,034 copying build/lib/rna_tools/tools/workflow/evox.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,036 copying build/lib/rna_tools/tools/workflow/pdb_list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,039 copying build/lib/rna_tools/tools/workflow/rp13_automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,041 copying build/lib/rna_tools/tools/workflow/automatix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,043 copying build/lib/rna_tools/tools/workflow/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,045 copying build/lib/rna_tools/tools/workflow/chunker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,047 copying build/lib/rna_tools/tools/workflow/run_1 -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,049 copying build/lib/rna_tools/tools/workflow/mqaprna_run copy.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,055 copying build/lib/rna_tools/tools/workflow/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,057 copying build/lib/rna_tools/tools/workflow/xxdownload_job_and_process.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,059 copying build/lib/rna_tools/tools/workflow/mqaprna_massive_destruction.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,061 copying build/lib/rna_tools/tools/workflow/mass_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,063 copying build/lib/rna_tools/tools/workflow/after_peyote_clean.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/workflow 2026-03-13T22:09:48,065 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:09:48,066 copying build/lib/rna_tools/tools/rna_rfam/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:09:48,068 copying build/lib/rna_tools/tools/rna_rfam/list.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:09:48,071 copying build/lib/rna_tools/tools/rna_rfam/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_rfam 2026-03-13T22:09:48,074 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,075 copying build/lib/rna_tools/tools/rna_calc_hbonds/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,077 copying build/lib/rna_tools/tools/rna_calc_hbonds/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,079 copying build/lib/rna_tools/tools/rna_calc_hbonds/pytraj_hbond.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,081 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdtraj_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,082 copying build/lib/rna_tools/tools/rna_calc_hbonds/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,084 copying build/lib/rna_tools/tools/rna_calc_hbonds/mdanalysis_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,087 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:09:48,087 copying build/lib/rna_tools/tools/rna_calc_hbonds/docs/hbonds_pymol.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/docs 2026-03-13T22:09:48,093 copying build/lib/rna_tools/tools/rna_calc_hbonds/pymol_list_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds 2026-03-13T22:09:48,096 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,097 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addh.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,100 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pse -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,103 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,105 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,107 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera_onlyBases.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,109 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,112 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,114 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/7jnh-AUA_ha.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,116 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,118 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,120 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_bases_only_addhpymol.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,122 copying build/lib/rna_tools/tools/rna_calc_hbonds/test_data/Triple_cWW_cHW_UAU_rpr_addChimera.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_hbonds/test_data 2026-03-13T22:09:48,125 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,126 copying build/lib/rna_tools/tools/df/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,129 copying build/lib/rna_tools/tools/df/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,130 copying build/lib/rna_tools/tools/df/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,132 copying build/lib/rna_tools/tools/df/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,134 copying build/lib/rna_tools/tools/df/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,137 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,138 copying build/lib/rna_tools/tools/df/test_data/min_4.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,140 copying build/lib/rna_tools/tools/df/test_data/cgc_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,142 copying build/lib/rna_tools/tools/df/test_data/min_3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,144 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge_on.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,146 copying build/lib/rna_tools/tools/df/test_data/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,149 copying build/lib/rna_tools/tools/df/test_data/min_2.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,151 copying build/lib/rna_tools/tools/df/test_data/d8.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,153 copying build/lib/rna_tools/tools/df/test_data/cga_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,155 copying build/lib/rna_tools/tools/df/test_data/rna_df_merge.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,157 copying build/lib/rna_tools/tools/df/test_data/d3.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df/test_data 2026-03-13T22:09:48,159 copying build/lib/rna_tools/tools/df/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/df 2026-03-13T22:09:48,161 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:09:48,162 copying build/lib/rna_tools/tools/rna_x3dna/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:09:48,164 copying build/lib/rna_tools/tools/rna_x3dna/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:09:48,165 copying build/lib/rna_tools/tools/rna_x3dna/readme.rst -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:09:48,167 copying build/lib/rna_tools/tools/rna_x3dna/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna 2026-03-13T22:09:48,171 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,172 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr_output.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,174 copying build/lib/rna_tools/tools/rna_x3dna/test_data/6TNA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,182 copying build/lib/rna_tools/tools/rna_x3dna/test_data/rp2_bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,187 copying build/lib/rna_tools/tools/rna_x3dna/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,189 copying build/lib/rna_tools/tools/rna_x3dna/test_data/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_x3dna/test_data 2026-03-13T22:09:48,194 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,196 copying build/lib/rna_tools/tools/rna_seq_identity/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,198 copying build/lib/rna_tools/tools/rna_seq_identity/output.sto -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,200 copying build/lib/rna_tools/tools/rna_seq_identity/seq2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,201 copying build/lib/rna_tools/tools/rna_seq_identity/pairwase.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,203 copying build/lib/rna_tools/tools/rna_seq_identity/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,206 copying build/lib/rna_tools/tools/rna_seq_identity/RF03167.cm -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,210 copying build/lib/rna_tools/tools/rna_seq_identity/seq1.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,212 copying build/lib/rna_tools/tools/rna_seq_identity/seq12.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_seq_identity 2026-03-13T22:09:48,215 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:48,216 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:48,219 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:48,221 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists 2026-03-13T22:09:48,224 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:48,225 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj02.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:48,230 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:48,232 copying build/lib/rna_tools/tools/pdbs_measure_atom_dists/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdbs_measure_atom_dists/test_data 2026-03-13T22:09:48,237 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:09:48,238 copying build/lib/rna_tools/tools/rna_multimodels/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:09:48,240 copying build/lib/rna_tools/tools/rna_multimodels/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:09:48,243 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:48,244 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:48,249 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Chen_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:48,254 copying build/lib/rna_tools/tools/rna_multimodels/test_in/17_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_in 2026-03-13T22:09:48,259 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:09:48,260 copying build/lib/rna_tools/tools/rna_multimodels/test_out/rp17.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/test_out 2026-03-13T22:09:48,269 copying build/lib/rna_tools/tools/rna_multimodels/test_util.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:09:48,272 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:48,273 copying build/lib/rna_tools/tools/rna_multimodels/data/rp17_n3_ideal.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:48,287 copying build/lib/rna_tools/tools/rna_multimodels/data/seq.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels/data 2026-03-13T22:09:48,289 copying build/lib/rna_tools/tools/rna_multimodels/check.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_multimodels 2026-03-13T22:09:48,292 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,293 copying build/lib/rna_tools/tools/rna_prediction_significance/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,295 copying build/lib/rna_tools/tools/rna_prediction_significance/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,297 copying build/lib/rna_tools/tools/rna_prediction_significance/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,300 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:09:48,301 copying build/lib/rna_tools/tools/rna_prediction_significance/opt/RNA_PredictionSignificance.cpp -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance/opt 2026-03-13T22:09:48,303 copying build/lib/rna_tools/tools/rna_prediction_significance/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,306 copying build/lib/rna_tools/tools/rna_prediction_significance/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_prediction_significance 2026-03-13T22:09:48,308 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,309 copying build/lib/rna_tools/tools/webserver-engine/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,311 copying build/lib/rna_tools/tools/webserver-engine/daemon.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,313 copying build/lib/rna_tools/tools/webserver-engine/daemon.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,315 copying build/lib/rna_tools/tools/webserver-engine/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,317 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:48,319 copying build/lib/rna_tools/tools/webserver-engine/web/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:48,321 copying build/lib/rna_tools/tools/webserver-engine/web/urls.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:48,324 copying build/lib/rna_tools/tools/webserver-engine/web/settings.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:48,326 copying build/lib/rna_tools/tools/webserver-engine/web/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/web 2026-03-13T22:09:48,328 copying build/lib/rna_tools/tools/webserver-engine/cleanup.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,330 copying build/lib/rna_tools/tools/webserver-engine/notes.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,332 copying build/lib/rna_tools/tools/webserver-engine/install.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:48,334 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:48,335 copying build/lib/rna_tools/tools/webserver-engine/app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:48,337 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static 2026-03-13T22:09:48,339 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:48,340 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:48,341 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:48,343 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:48,344 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:48,345 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js 2026-03-13T22:09:48,348 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:48,351 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:09:48,351 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload 2026-03-13T22:09:48,353 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:48,354 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:48,357 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img 2026-03-13T22:09:48,359 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload.php -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test 2026-03-13T22:09:48,361 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:09:48,362 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css 2026-03-13T22:09:48,369 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:48,370 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:48,372 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src/bootstrap-filestyle.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/src 2026-03-13T22:09:48,374 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:48,376 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/LICENSE-MIT -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle 2026-03-13T22:09:48,378 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:48,380 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:48,381 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:48,383 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:48,385 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:48,387 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload 2026-03-13T22:09:48,389 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:48,390 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:48,398 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/dropzone 2026-03-13T22:09:48,401 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,402 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,403 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,405 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,407 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,410 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,412 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,414 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,420 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tRNA_saxs.dat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,422 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,425 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,429 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,431 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,436 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,438 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,440 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,444 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,452 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,458 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/rp21.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,461 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,468 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1xjr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,472 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,474 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1l2x_rna_clust0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,476 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,480 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,484 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,486 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,492 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/MissingAtomsAdded_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,494 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,497 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,500 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,502 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/1EHZ.cif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,508 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/gtp.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,510 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,514 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/missing_op1op2_r43OK.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,516 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/21_3dRNA_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,520 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,522 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/demo 2026-03-13T22:09:48,524 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap-acknowledgeinput.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:48,526 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,527 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,532 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01c.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,535 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/folder.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,537 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02x.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,543 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01b.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,547 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/03.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,553 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/diffpdb.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,559 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/qrnas.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,563 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/02.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,568 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/img/01.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/img 2026-03-13T22:09:48,571 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap 2026-03-13T22:09:48,573 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:48,574 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:48,577 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:48,581 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/js 2026-03-13T22:09:48,584 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:48,585 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:48,587 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/img 2026-03-13T22:09:48,590 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:48,591 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:48,595 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:48,599 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:48,602 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/bootstrap/css 2026-03-13T22:09:48,640 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/jsmol.zip -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:48,696 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:48,697 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:48,699 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/help 2026-03-13T22:09:48,702 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/rto.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app 2026-03-13T22:09:48,705 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:48,706 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:48,707 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:48,710 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:48,714 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js 2026-03-13T22:09:48,720 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/extra.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:48,722 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:48,726 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/old_index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:48,730 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets 2026-03-13T22:09:48,732 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,734 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:48,735 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:48,738 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify/prettify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/google-code-prettify 2026-03-13T22:09:48,741 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/demo.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,743 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.8.3.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,747 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-ui-1.10.0.custom.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,753 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/jquery-1.9.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,757 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/bootstrap.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,760 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js/docs.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/js 2026-03-13T22:09:48,763 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,764 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,766 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/favicon.ico -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,768 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-72-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,771 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-144-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,774 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-57-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,776 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico/apple-touch-icon-114-precomposed.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/ico 2026-03-13T22:09:48,779 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:09:48,780 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img/bs-docs-masthead-pattern.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/img 2026-03-13T22:09:48,783 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:48,784 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/docs.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:48,787 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome-ie7.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:48,790 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/bootstrap.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:48,795 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font-awesome.min.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css 2026-03-13T22:09:48,799 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,800 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/FontAwesome.otf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,805 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.eot -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,808 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.woff -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,811 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.ttf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,814 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font/fontawesome-webfont.svg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/assets/css/font 2026-03-13T22:09:48,819 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47 2026-03-13T22:09:48,822 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:09:48,823 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/demo.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css 2026-03-13T22:09:48,825 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:48,826 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.10.0.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:48,830 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,831 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_2e83ff_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,834 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,836 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_222222_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,838 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,840 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,843 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,845 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_inset-soft_95_fef1ec_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,847 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,849 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,852 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,854 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_highlight-soft_75_cccccc_1x100.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,856 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,858 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,861 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_ffffff_1x400.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images 2026-03-13T22:09:48,863 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery-ui-1.9.2.custom.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:48,866 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.9.2.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:48,868 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/jquery.ui.1.10.0.ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme 2026-03-13T22:09:48,870 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party 2026-03-13T22:09:48,872 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput 2026-03-13T22:09:48,874 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:48,875 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:48,877 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js 2026-03-13T22:09:48,881 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:48,881 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:48,884 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:48,885 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:48,888 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images 2026-03-13T22:09:48,890 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:09:48,891 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css 2026-03-13T22:09:48,894 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:48,895 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:48,901 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:48,903 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:48,905 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo 2026-03-13T22:09:48,908 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:09:48,910 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:48,911 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:48,913 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:48,916 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js 2026-03-13T22:09:48,918 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker 2026-03-13T22:09:48,922 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:09:48,923 copying build/lib/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css 2026-03-13T22:09:48,927 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,928 copying build/lib/rna_tools/tools/webserver-engine/app/templates/about.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,930 copying build/lib/rna_tools/tools/webserver-engine/app/templates/swap.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,933 copying build/lib/rna_tools/tools/webserver-engine/app/templates/clarna.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,935 copying build/lib/rna_tools/tools/webserver-engine/app/templates/qrnas.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,938 copying build/lib/rna_tools/tools/webserver-engine/app/templates/cat.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,940 copying build/lib/rna_tools/tools/webserver-engine/app/templates/seq.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,943 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,945 copying build/lib/rna_tools/tools/webserver-engine/app/templates/assess.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,948 copying build/lib/rna_tools/tools/webserver-engine/app/templates/help.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,953 copying build/lib/rna_tools/tools/webserver-engine/app/templates/base.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,955 copying build/lib/rna_tools/tools/webserver-engine/app/templates/topdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,958 copying build/lib/rna_tools/tools/webserver-engine/app/templates/dont_exits.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,960 copying build/lib/rna_tools/tools/webserver-engine/app/templates/rpl.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,962 copying build/lib/rna_tools/tools/webserver-engine/app/templates/analysis.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,965 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notebase.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,967 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mdr.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,970 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,971 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/progress.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,974 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/secondary-structure.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,976 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/sequence-search.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,979 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/result.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,982 copying build/lib/rna_tools/tools/webserver-engine/app/templates/archive/submit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates/archive 2026-03-13T22:09:48,984 copying build/lib/rna_tools/tools/webserver-engine/app/templates/h2a.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,986 copying build/lib/rna_tools/tools/webserver-engine/app/templates/notes.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,989 copying build/lib/rna_tools/tools/webserver-engine/app/templates/min.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,991 copying build/lib/rna_tools/tools/webserver-engine/app/templates/delete.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,994 copying build/lib/rna_tools/tools/webserver-engine/app/templates/ss.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,996 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-rmsd.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:48,999 copying build/lib/rna_tools/tools/webserver-engine/app/templates/edit.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,001 copying build/lib/rna_tools/tools/webserver-engine/app/templates/home.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,004 copying build/lib/rna_tools/tools/webserver-engine/app/templates/diffpdb.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,006 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tools.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,008 copying build/lib/rna_tools/tools/webserver-engine/app/templates/tocif.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,010 copying build/lib/rna_tools/tools/webserver-engine/app/templates/calc-inf.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,013 copying build/lib/rna_tools/tools/webserver-engine/app/templates/contact.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,015 copying build/lib/rna_tools/tools/webserver-engine/app/templates/extract.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,018 copying build/lib/rna_tools/tools/webserver-engine/app/templates/errors.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,020 copying build/lib/rna_tools/tools/webserver-engine/app/templates/mutate.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app/templates 2026-03-13T22:09:49,023 copying build/lib/rna_tools/tools/webserver-engine/app/views.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:49,026 copying build/lib/rna_tools/tools/webserver-engine/app/models.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:49,029 copying build/lib/rna_tools/tools/webserver-engine/app/admin.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/app 2026-03-13T22:09:49,031 copying build/lib/rna_tools/tools/webserver-engine/checker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,034 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:49,036 copying build/lib/rna_tools/tools/webserver-engine/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:49,059 copying build/lib/rna_tools/tools/webserver-engine/docs/admin.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/docs 2026-03-13T22:09:49,130 copying build/lib/rna_tools/tools/webserver-engine/manage.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,132 copying build/lib/rna_tools/tools/webserver-engine/runme_dev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,134 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin 2026-03-13T22:09:49,136 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,137 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectBox.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,139 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,140 copying build/lib/rna_tools/tools/webserver-engine/admin/js/calendar.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,143 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,144 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,147 copying build/lib/rna_tools/tools/webserver-engine/admin/js/core.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,150 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.init.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,151 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,156 copying build/lib/rna_tools/tools/webserver-engine/admin/js/urlify.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,158 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,160 copying build/lib/rna_tools/tools/webserver-engine/admin/js/prepopulate.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,162 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:49,163 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/ordering.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:49,165 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/RelatedObjectLookups.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:49,167 copying build/lib/rna_tools/tools/webserver-engine/admin/js/admin/DateTimeShortcuts.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js/admin 2026-03-13T22:09:49,169 copying build/lib/rna_tools/tools/webserver-engine/admin/js/collapse.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,170 copying build/lib/rna_tools/tools/webserver-engine/admin/js/jquery.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,175 copying build/lib/rna_tools/tools/webserver-engine/admin/js/inlines.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,177 copying build/lib/rna_tools/tools/webserver-engine/admin/js/SelectFilter2.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,179 copying build/lib/rna_tools/tools/webserver-engine/admin/js/LICENSE-JQUERY.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,180 copying build/lib/rna_tools/tools/webserver-engine/admin/js/actions.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,182 copying build/lib/rna_tools/tools/webserver-engine/admin/js/getElementsBySelector.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,185 copying build/lib/rna_tools/tools/webserver-engine/admin/js/compress.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,187 copying build/lib/rna_tools/tools/webserver-engine/admin/js/timeparse.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/js 2026-03-13T22:09:49,190 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,191 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_error.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,193 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,194 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,197 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,198 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_calendar.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,201 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_deletelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,203 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-selected.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,204 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_alert.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,206 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-right.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,208 copying build/lib/rna_tools/tools/webserver-engine/admin/img/default-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,210 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,212 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,213 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg_rtl.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,215 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete-8bit.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,217 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-grabber.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,219 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg-reverse.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,221 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-add.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,222 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-unknown.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,224 copying build/lib/rna_tools/tools/webserver-engine/admin/img/changelist-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,226 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_success.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,228 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-splitter-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,230 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_addlink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,231 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright_over.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,233 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tooltag-arrowright.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,235 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-restore.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,237 copying build/lib/rna_tools/tools/webserver-engine/admin/img/tool-left.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,239 copying build/lib/rna_tools/tools/webserver-engine/admin/img/nav-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,241 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-search.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,243 copying build/lib/rna_tools/tools/webserver-engine/admin/img/selector-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,245 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_clock.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,247 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser_stacked-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,249 copying build/lib/rna_tools/tools/webserver-engine/admin/img/sorting-icons.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,251 copying build/lib/rna_tools/tools/webserver-engine/admin/img/inline-delete.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,253 copying build/lib/rna_tools/tools/webserver-engine/admin/img/chooser-bg.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,254 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-yes.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,256 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_searchbox.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,258 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon_changelink.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,260 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:09:49,261 copying build/lib/rna_tools/tools/webserver-engine/admin/img/gis/move_vertex_on.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img/gis 2026-03-13T22:09:49,263 copying build/lib/rna_tools/tools/webserver-engine/admin/img/deleted-overlay.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,265 copying build/lib/rna_tools/tools/webserver-engine/admin/img/icon-no.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/img 2026-03-13T22:09:49,268 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,268 copying build/lib/rna_tools/tools/webserver-engine/admin/css/forms.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,271 copying build/lib/rna_tools/tools/webserver-engine/admin/css/changelists.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,273 copying build/lib/rna_tools/tools/webserver-engine/admin/css/rtl.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,276 copying build/lib/rna_tools/tools/webserver-engine/admin/css/widgets.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,278 copying build/lib/rna_tools/tools/webserver-engine/admin/css/ie.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,280 copying build/lib/rna_tools/tools/webserver-engine/admin/css/base.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,283 copying build/lib/rna_tools/tools/webserver-engine/admin/css/dashboard.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/admin/css 2026-03-13T22:09:49,285 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:09:49,287 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:49,288 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.ajaxQueue.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:49,290 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.autocomplete.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:49,293 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:49,297 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/js/jquery.bgiframe.min.js -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/js 2026-03-13T22:09:49,299 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions 2026-03-13T22:09:49,301 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:09:49,302 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/img/indicator.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/img 2026-03-13T22:09:49,305 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:09:49,306 copying build/lib/rna_tools/tools/webserver-engine/django_extensions/css/jquery.autocomplete.css -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine/django_extensions/css 2026-03-13T22:09:49,308 copying build/lib/rna_tools/tools/webserver-engine/checker.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,310 copying build/lib/rna_tools/tools/webserver-engine/ac -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,311 copying build/lib/rna_tools/tools/webserver-engine/sendmail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,313 copying build/lib/rna_tools/tools/webserver-engine/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,316 copying build/lib/rna_tools/tools/webserver-engine/wsgi.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,318 copying build/lib/rna_tools/tools/webserver-engine/ddev.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/webserver-engine 2026-03-13T22:09:49,320 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,321 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,323 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,325 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:09:49,326 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/doc/varna_2pk.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/doc 2026-03-13T22:09:49,332 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,334 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_ss_pk_to_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,336 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats 2026-03-13T22:09:49,338 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:49,339 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna_2chains.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:49,342 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:49,344 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/simrna3.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:49,345 copying build/lib/rna_tools/tools/rna_convert_pseudoknot_formats/test_data/ss_with_pk.ss -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_convert_pseudoknot_formats/test_data 2026-03-13T22:09:49,348 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:49,349 copying build/lib/rna_tools/tools/pymol_preview_generator/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:49,351 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,352 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/linux.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,380 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,402 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,410 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-ok.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,412 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/demo.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,440 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/preview_2021-10-24_at_11.29.15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,452 copying build/lib/rna_tools/tools/pymol_preview_generator/docs/popup-progress.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/docs 2026-03-13T22:09:49,455 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:49,457 copying build/lib/rna_tools/tools/pymol_preview_generator/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator 2026-03-13T22:09:49,460 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash 2026-03-13T22:09:49,461 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow 2026-03-13T22:09:49,463 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,464 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:49,465 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:49,467 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,469 copying build/lib/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/bash/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,472 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh 2026-03-13T22:09:49,473 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow 2026-03-13T22:09:49,475 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,476 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:49,477 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook/Thumbnail.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/QuickLook 2026-03-13T22:09:49,479 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/Info.plist -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,481 copying build/lib/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents/document.wflow -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_preview_generator/zsh/PyMOL Preview.workflow/Contents 2026-03-13T22:09:49,484 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,485 copying build/lib/rna_tools/tools/cluster_load/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,486 copying build/lib/rna_tools/tools/cluster_load/load -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,488 copying build/lib/rna_tools/tools/cluster_load/cluster_load.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,490 copying build/lib/rna_tools/tools/cluster_load/cluster_mini_free.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,492 copying build/lib/rna_tools/tools/cluster_load/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/cluster_load 2026-03-13T22:09:49,494 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,495 copying build/lib/rna_tools/tools/misc/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,497 copying build/lib/rna_tools/tools/misc/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,498 copying build/lib/rna_tools/tools/misc/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,500 copying build/lib/rna_tools/tools/misc/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,502 copying build/lib/rna_tools/tools/misc/rna_remote_run.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,504 copying build/lib/rna_tools/tools/misc/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,505 copying build/lib/rna_tools/tools/misc/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,507 copying build/lib/rna_tools/tools/misc/rna_topdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,509 copying build/lib/rna_tools/tools/misc/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,511 copying build/lib/rna_tools/tools/misc/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,513 copying build/lib/rna_tools/tools/misc/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,515 copying build/lib/rna_tools/tools/misc/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,516 copying build/lib/rna_tools/tools/misc/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/misc 2026-03-13T22:09:49,519 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:49,520 copying build/lib/rna_tools/tools/rnashape2ascii/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:49,522 copying build/lib/rna_tools/tools/rnashape2ascii/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:49,524 copying build/lib/rna_tools/tools/rnashape2ascii/rnashape2ascii.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:49,526 copying build/lib/rna_tools/tools/rnashape2ascii/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii 2026-03-13T22:09:49,528 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:49,529 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/RNAPZ12_1M7_0000.rdat -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:49,531 copying build/lib/rna_tools/tools/rnashape2ascii/test_data/r1_raw.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rnashape2ascii/test_data 2026-03-13T22:09:49,533 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,534 copying build/lib/rna_tools/tools/rna_filter/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,536 copying build/lib/rna_tools/tools/rna_filter/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,538 copying build/lib/rna_tools/tools/rna_filter/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,539 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,541 copying build/lib/rna_tools/tools/rna_filter/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,543 copying build/lib/rna_tools/tools/rna_filter/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,545 copying build/lib/rna_tools/tools/rna_filter/rna_pairs2rfilter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,547 copying build/lib/rna_tools/tools/rna_filter/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,550 copying build/lib/rna_tools/tools/rna_filter/rna_dca_select_interactions.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,552 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2mqapRNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,554 copying build/lib/rna_tools/tools/rna_filter/rna_restrs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,556 copying build/lib/rna_tools/tools/rna_filter/rna_dca_mapping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,558 copying build/lib/rna_tools/tools/rna_filter/rna_get_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,561 copying build/lib/rna_tools/tools/rna_filter/test_dca.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,563 copying build/lib/rna_tools/tools/rna_filter/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,565 copying build/lib/rna_tools/tools/rna_filter/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,567 copying build/lib/rna_tools/tools/rna_filter/test_rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,569 copying build/lib/rna_tools/tools/rna_filter/simrna_get_restraints.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,571 copying build/lib/rna_tools/tools/rna_filter/rna_csv2pairs.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,573 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:49,574 copying build/lib/rna_tools/tools/rna_filter/test_data/restraints.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:49,576 copying build/lib/rna_tools/tools/rna_filter/test_data/rna_filter.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:49,578 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:49,580 copying build/lib/rna_tools/tools/rna_filter/test_data/CG.trafl -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter/test_data 2026-03-13T22:09:49,582 copying build/lib/rna_tools/tools/rna_filter/rna_get_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,584 copying build/lib/rna_tools/tools/rna_filter/pymol_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_filter 2026-03-13T22:09:49,587 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,588 copying build/lib/rna_tools/tools/rna_calc_inf/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,590 copying build/lib/rna_tools/tools/rna_calc_inf/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,592 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:49,593 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:49,598 copying build/lib/rna_tools/tools/rna_calc_inf/doc/1y26_dinf2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/doc 2026-03-13T22:09:49,615 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_dinf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,618 copying build/lib/rna_tools/tools/rna_calc_inf/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,621 copying build/lib/rna_tools/tools/rna_calc_inf/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,624 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,625 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,630 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_from_SeqSS.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,632 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m10.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,634 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,637 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_stacking.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,640 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/test.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,642 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451_dinf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,644 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1prot.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,651 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,657 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1y26X_M451.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,663 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,664 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/orignal.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,666 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,671 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/del.inf -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,673 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,677 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,682 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_0_solution_4XW7_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,687 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Adamiak_1_rpr_del46-56.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,690 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/inf.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,692 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/rp13/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data/rp13 2026-03-13T22:09:49,698 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,700 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_m1.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,702 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/1Y26_dinf_comparison.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,704 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/13_Bujnicki_1_rpr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,708 copying build/lib/rna_tools/tools/rna_calc_inf/test_data/pistol_inf_selection.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf/test_data 2026-03-13T22:09:49,710 copying build/lib/rna_tools/tools/rna_calc_inf/test_dinf.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_calc_inf 2026-03-13T22:09:49,712 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,713 copying build/lib/rna_tools/tools/diffpdb/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,715 copying build/lib/rna_tools/tools/diffpdb/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,717 copying build/lib/rna_tools/tools/diffpdb/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,719 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-03-13T22:09:49,720 copying build/lib/rna_tools/tools/diffpdb/lib/diff2html.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/lib 2026-03-13T22:09:49,724 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,725 copying build/lib/rna_tools/tools/diffpdb/doc/missing-atoms.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,732 copying build/lib/rna_tools/tools/diffpdb/doc/atom-variants.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,735 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,739 copying build/lib/rna_tools/tools/diffpdb/doc/screenshot2.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,744 copying build/lib/rna_tools/tools/diffpdb/doc/missing-op3.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,749 copying build/lib/rna_tools/tools/diffpdb/doc/diffpdb_osx_diffmerge.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/doc 2026-03-13T22:09:49,755 copying build/lib/rna_tools/tools/diffpdb/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,758 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-03-13T22:09:49,759 copying build/lib/rna_tools/tools/diffpdb/output/2_str1_vs_str2.html -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/output 2026-03-13T22:09:49,762 copying build/lib/rna_tools/tools/diffpdb/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb 2026-03-13T22:09:49,765 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,765 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,770 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,773 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:49,774 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq_decoy0171_amb_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:49,777 copying build/lib/rna_tools/tools/diffpdb/test_data/4/1duq.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/4 2026-03-13T22:09:49,781 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:49,782 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:49,784 copying build/lib/rna_tools/tools/diffpdb/test_data/2/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/2 2026-03-13T22:09:49,786 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,789 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:49,790 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:49,792 copying build/lib/rna_tools/tools/diffpdb/test_data/3.ident/str2.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/3.ident 2026-03-13T22:09:49,794 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:49,795 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:49,800 copying build/lib/rna_tools/tools/diffpdb/test_data/1/1kxkA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data/1 2026-03-13T22:09:49,804 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA_min.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,808 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,810 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,813 copying build/lib/rna_tools/tools/diffpdb/test_data/5k7c_clean_onechain_renumber_as_puzzle_srr.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,817 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0_clx.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,821 copying build/lib/rna_tools/tools/diffpdb/test_data/pistol_thrs0.50A_clust272-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,825 copying build/lib/rna_tools/tools/diffpdb/test_data/cat_chunk003_2r8s_5kcycles_decoys_nonativefrags.cluster1.0.pdb.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/diffpdb/test_data 2026-03-13T22:09:49,829 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:49,830 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:49,832 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:49,834 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:49,837 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor 2026-03-13T22:09:49,839 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:49,840 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:49,847 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel_select_atoms_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:49,854 copying build/lib/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data/3w3s_homologymodel.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_pdb_edit_occupancy_bfactor/test_data 2026-03-13T22:09:49,861 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,862 copying build/lib/rna_tools/tools/rna_get_restraints/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,864 copying build/lib/rna_tools/tools/rna_get_restraints/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,866 copying build/lib/rna_tools/tools/rna_get_restraints/rna_simrna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,869 copying build/lib/rna_tools/tools/rna_get_restraints/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,871 copying build/lib/rna_tools/tools/rna_get_restraints/rna_farna_get_restraints_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/rna_get_restraints 2026-03-13T22:09:49,874 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,875 copying build/lib/rna_tools/tools/clarna_app/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,877 copying build/lib/rna_tools/tools/clarna_app/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,880 copying build/lib/rna_tools/tools/clarna_app/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,882 copying build/lib/rna_tools/tools/clarna_app/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,885 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:09:49,886 copying build/lib/rna_tools/tools/clarna_app/data/cl_full.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:09:49,889 copying build/lib/rna_tools/tools/clarna_app/data/cl.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:09:49,893 copying build/lib/rna_tools/tools/clarna_app/data/cl_short.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app/data 2026-03-13T22:09:49,895 copying build/lib/rna_tools/tools/clarna_app/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,897 copying build/lib/rna_tools/tools/clarna_app/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clarna_app 2026-03-13T22:09:49,900 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:09:49,901 copying build/lib/rna_tools/tools/openfold/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:09:49,903 copying build/lib/rna_tools/tools/openfold/rna_openfold_json_to_cif.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:09:49,907 copying build/lib/rna_tools/tools/openfold/rna_geometric_cropping.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/openfold 2026-03-13T22:09:49,911 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:49,912 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:49,915 copying build/lib/rna_tools/tools/renum_pdb_to_aln/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:49,916 copying build/lib/rna_tools/tools/renum_pdb_to_aln/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln 2026-03-13T22:09:49,919 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:49,920 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01_out.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:49,923 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/ALN_OBJ1_OBJ2.fa -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:49,925 copying build/lib/rna_tools/tools/renum_pdb_to_aln/test_data/obj01.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/renum_pdb_to_aln/test_data 2026-03-13T22:09:49,929 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:49,930 copying build/lib/rna_tools/tools/pdb_formatix/RosettaUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:49,933 copying build/lib/rna_tools/tools/pdb_formatix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:49,935 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,936 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,941 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,945 copying build/lib/rna_tools/tools/pdb_formatix/test/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,947 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1+ter.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,953 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,956 copying build/lib/rna_tools/tools/pdb_formatix/test/1kxkA_rasp.native.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,962 copying build/lib/rna_tools/tools/pdb_formatix/test/test0.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,966 copying build/lib/rna_tools/tools/pdb_formatix/test/test0_3to1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,970 copying build/lib/rna_tools/tools/pdb_formatix/test/1xjrA_M1.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,975 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,984 copying build/lib/rna_tools/tools/pdb_formatix/test/protein.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,987 copying build/lib/rna_tools/tools/pdb_formatix/test/sample_for_distance.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,989 copying build/lib/rna_tools/tools/pdb_formatix/test/test1.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:49,992 copying build/lib/rna_tools/tools/pdb_formatix/test/test_nmr_atom.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:50,014 copying build/lib/rna_tools/tools/pdb_formatix/test/test.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix/test 2026-03-13T22:09:50,016 copying build/lib/rna_tools/tools/pdb_formatix/SingleLineUtils.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:50,018 copying build/lib/rna_tools/tools/pdb_formatix/rebuilder.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:50,020 copying build/lib/rna_tools/tools/pdb_formatix/test-quick-and-dirty.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:50,022 copying build/lib/rna_tools/tools/pdb_formatix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:50,024 copying build/lib/rna_tools/tools/pdb_formatix/PDBFile.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pdb_formatix 2026-03-13T22:09:50,027 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:09:50,028 copying build/lib/rna_tools/tools/proteins/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:09:50,030 copying build/lib/rna_tools/tools/proteins/calc_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:09:50,032 copying build/lib/rna_tools/tools/proteins/1djf.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:09:50,036 copying build/lib/rna_tools/tools/proteins/u2-u6-cwc15-trim2_proteinOnly.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/proteins 2026-03-13T22:09:50,039 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,041 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,042 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,044 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pymol_daslab.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,047 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/colorbyrmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,050 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/calc_gdt.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,052 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/get_raw_distances.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,054 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/show_contacts.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,057 copying build/lib/rna_tools/tools/PyMOL4RNA/libs/pucker.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/libs 2026-03-13T22:09:50,059 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,062 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,065 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,068 copying build/lib/rna_tools/tools/PyMOL4RNA/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,069 copying build/lib/rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,072 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,073 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pdb.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,078 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pucker.jpg -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,082 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ss.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,086 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/spl.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,101 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/p.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,105 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rs.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,109 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/ion.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,113 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/rna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,117 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/pymol4spliceosome.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,131 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/clarna.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,134 copying build/lib/rna_tools/tools/PyMOL4RNA/doc/run.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/doc 2026-03-13T22:09:50,154 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,157 copying build/lib/rna_tools/tools/PyMOL4RNA/rnapuzzles.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,159 copying build/lib/rna_tools/tools/PyMOL4RNA/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,161 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_color_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,164 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,168 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.xlsx -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,171 copying build/lib/rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,173 copying build/lib/rna_tools/tools/PyMOL4RNA/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,175 copying build/lib/rna_tools/tools/PyMOL4RNA/external_flatten_object.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,178 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:09:50,179 copying build/lib/rna_tools/tools/PyMOL4RNA/test_data/5k7c_clean.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA/test_data 2026-03-13T22:09:50,184 copying build/lib/rna_tools/tools/PyMOL4RNA/code_for_spl.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/PyMOL4RNA 2026-03-13T22:09:50,187 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:50,188 copying build/lib/rna_tools/tools/pymol_color_by_conserv/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:50,190 copying build/lib/rna_tools/tools/pymol_color_by_conserv/conserv_to_csv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:50,192 copying build/lib/rna_tools/tools/pymol_color_by_conserv/readme.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:50,195 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:50,196 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/consensus-file.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:50,199 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/jalview.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:50,205 copying build/lib/rna_tools/tools/pymol_color_by_conserv/docs/cwc15.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/docs 2026-03-13T22:09:50,248 copying build/lib/rna_tools/tools/pymol_color_by_conserv/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv 2026-03-13T22:09:50,250 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data 2026-03-13T22:09:50,252 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:50,253 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_consensus.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:50,256 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15_conserv.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:50,257 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/psiblast_8183496.aln -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:50,260 copying build/lib/rna_tools/tools/pymol_color_by_conserv/data/cwc15/cwc15.pml -> build/bdist.linux-armv7l/wheel/rna_tools/tools/pymol_color_by_conserv/data/cwc15 2026-03-13T22:09:50,263 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,264 copying build/lib/rna_tools/tools/clanstix/.gitignore -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,266 copying build/lib/rna_tools/tools/clanstix/test.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,268 copying build/lib/rna_tools/tools/clanstix/__init__.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,270 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:09:50,271 copying build/lib/rna_tools/tools/clanstix/doc/yndSrLTb7l.gif -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:09:50,291 copying build/lib/rna_tools/tools/clanstix/doc/rna_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:09:50,294 copying build/lib/rna_tools/tools/clanstix/doc/rp18_clanstix.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/doc 2026-03-13T22:09:50,298 copying build/lib/rna_tools/tools/clanstix/test3.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,300 copying build/lib/rna_tools/tools/clanstix/test2.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,302 copying build/lib/rna_tools/tools/clanstix/LICENSE -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,304 copying build/lib/rna_tools/tools/clanstix/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,307 copying build/lib/rna_tools/tools/clanstix/README.md -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,309 copying build/lib/rna_tools/tools/clanstix/colors.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix 2026-03-13T22:09:50,311 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,312 copying build/lib/rna_tools/tools/clanstix/test_data/rp13_RNAevo_fragments_clans_raw.out -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,323 copying build/lib/rna_tools/tools/clanstix/test_data/gmp.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,328 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,333 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.in -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,337 creating build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,338 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/clans.input -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,343 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans_process.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,374 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/run.sh -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,376 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_clans.png -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,381 copying build/lib/rna_tools/tools/clanstix/test_data/rp17_del/rp17_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data/rp17_del 2026-03-13T22:09:50,385 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_ref_mapping_pk_refX.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,388 copying build/lib/rna_tools/tools/clanstix/test_data/matrix.txt -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,390 copying build/lib/rna_tools/tools/clanstix/test_data/rp18_rmsd.csv -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,393 copying build/lib/rna_tools/tools/clanstix/test_data/gmp_color_by_homolog_shape_by_source.clans -> build/bdist.linux-armv7l/wheel/rna_tools/tools/clanstix/test_data 2026-03-13T22:09:50,398 copying build/lib/rna_tools/shell_rc.sh -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,399 copying build/lib/rna_tools/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,402 copying build/lib/rna_tools/rna_tools_test_all.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,403 copying build/lib/rna_tools/rna_tools_config.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,405 copying build/lib/rna_tools/pytest.ini -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,407 copying build/lib/rna_tools/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,409 copying build/lib/rna_tools/BlastPDB.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,411 copying build/lib/rna_tools/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,413 copying build/lib/rna_tools/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,416 copying build/lib/rna_tools/update_readme.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,418 copying build/lib/rna_tools/rna_pdb_seq2.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,420 copying build/lib/rna_tools/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,422 copying build/lib/rna_tools/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,424 copying build/lib/rna_tools/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,427 copying build/lib/rna_tools/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,429 creating build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,430 copying build/lib/rna_tools/data/pdb_ids.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,432 copying build/lib/rna_tools/data/o2prim.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,434 copying build/lib/rna_tools/data/shape.txt -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,436 copying build/lib/rna_tools/data/rna_pdb_errors.csv -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,438 copying build/lib/rna_tools/data/C.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,440 copying build/lib/rna_tools/data/ACGU.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,442 copying build/lib/rna_tools/data/op4.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,444 copying build/lib/rna_tools/data/G.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,446 copying build/lib/rna_tools/data/PO3_inner.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,448 copying build/lib/rna_tools/data/A.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,450 copying build/lib/rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,453 copying build/lib/rna_tools/data/U.pdb -> build/bdist.linux-armv7l/wheel/rna_tools/data 2026-03-13T22:09:50,455 copying build/lib/rna_tools/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,457 copying build/lib/rna_tools/SecondaryStructure.py -> build/bdist.linux-armv7l/wheel/rna_tools 2026-03-13T22:09:50,459 running install_egg_info 2026-03-13T22:09:50,474 Copying rna_tools.egg-info to build/bdist.linux-armv7l/wheel/rna_tools-3.27.2-py3.11.egg-info 2026-03-13T22:09:50,488 running install_scripts 2026-03-13T22:09:50,491 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data 2026-03-13T22:09:50,492 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,493 copying build/scripts-3.11/rna_test_cuda.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,495 copying build/scripts-3.11/rna_df_merge.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,497 copying build/scripts-3.11/rna_gromacs_ready.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,499 copying build/scripts-3.11/rna_calc_hbonds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,501 copying build/scripts-3.11/rna_mq_exp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,503 copying build/scripts-3.11/rna_calc_rmsd_all_vs_all.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,505 copying build/scripts-3.11/rna_minimize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,507 copying build/scripts-3.11/triplexibility2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,510 copying build/scripts-3.11/rna_dict2fasta.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,512 copying build/scripts-3.11/rna_align_foldability.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,514 copying build/scripts-3.11/rna_rosetta_silent_split.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,516 copying build/scripts-3.11/rna_refinement.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,519 copying build/scripts-3.11/triplexibility.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,522 copying build/scripts-3.11/rna_align_find_core.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,523 copying build/scripts-3.11/rna_prediction_significance.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,525 copying build/scripts-3.11/rna_align_mfa2sto.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,527 copying build/scripts-3.11/rna_workflow.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,529 copying build/scripts-3.11/rna_pkd2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,531 copying build/scripts-3.11/rna_pdb_merge_into_one.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,533 copying build/scripts-3.11/rna_mq_rasp.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,535 copying build/scripts-3.11/rna_kd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,537 copying build/scripts-3.11/rna_align_find_seq_in_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,539 copying build/scripts-3.11/rna_kd2pkd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,541 copying build/scripts-3.11/pdbs_measure_atom_dists.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,543 copying build/scripts-3.11/select_seq_fromBLAStn_6outfm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,545 copying build/scripts-3.11/rna_clarna_compare.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,549 copying build/scripts-3.11/rna_pdb_merge_structure_with_fragments.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,551 copying build/scripts-3.11/rna_pairs2SimRNArestrs.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,553 copying build/scripts-3.11/rna_mq_rna3dcnn.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,555 copying build/scripts-3.11/rna_traj_range.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,557 copying build/scripts-3.11/rna_rosetta_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,559 copying build/scripts-3.11/rna_rosetta_check_progress.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,561 copying build/scripts-3.11/rna_pdb_inspect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,564 copying build/scripts-3.11/rna_md.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,566 copying build/scripts-3.11/rna_calc_rmsd_multi_targets.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,568 copying build/scripts-3.11/rna_rosetta_min.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,570 copying build/scripts-3.11/rna_mq_wx_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,572 copying build/scripts-3.11/rna_pdb_replace.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,574 copying build/scripts-3.11/rna_simrna_extract.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,576 copying build/scripts-3.11/rna_align_seq_to_alignment.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,578 copying build/scripts-3.11/renum_pdb_to_aln.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,580 copying build/scripts-3.11/rna_download_rfam.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,582 copying build/scripts-3.11/trx_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,584 copying build/scripts-3.11/trx_score_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,586 copying build/scripts-3.11/rna_rosetta_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,588 copying build/scripts-3.11/rna_ec2x.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,590 copying build/scripts-3.11/trx_mutagen.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,592 copying build/scripts-3.11/rna_rosetta_head.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,593 copying build/scripts-3.11/rna_cif2pdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,596 copying build/scripts-3.11/rna_mq_farfar2.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,598 copying build/scripts-3.11/rna_simrna_cluster.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,600 copying build/scripts-3.11/rna_plot_density.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,602 copying build/scripts-3.11/rna_torsions.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,604 copying build/scripts-3.11/rna_calc_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,606 copying build/scripts-3.11/rna_ss_get_bps.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,608 copying build/scripts-3.11/rna_mq_collect.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,611 copying build/scripts-3.11/diffpdb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,613 copying build/scripts-3.11/rna_filter.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,616 copying build/scripts-3.11/clarna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,620 copying build/scripts-3.11/rna_mq_clashscore.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,622 copying build/scripts-3.11/trx_mutagen_allvsall.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,624 copying build/scripts-3.11/rna_traj_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,627 copying build/scripts-3.11/rna_dG2kd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,630 copying build/scripts-3.11/rna_mq_analyzegeometry.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,632 copying build/scripts-3.11/rna_pkd2dG.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,634 copying build/scripts-3.11/rna_rosetta_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,637 copying build/scripts-3.11/rna_tools_which.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,640 copying build/scripts-3.11/rna_align_fetch_seed.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,642 copying build/scripts-3.11/rna_dot2ct.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,645 copying build/scripts-3.11/rna_x3dna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,648 copying build/scripts-3.11/rna_calc_rmsd_trafl.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,651 copying build/scripts-3.11/pymol_preview_install.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,654 copying build/scripts-3.11/rna_clanstix.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,657 copying build/scripts-3.11/rna_draw_edges.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,660 copying build/scripts-3.11/rna_openfold_json_to_cif.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,663 copying build/scripts-3.11/rna_alignment_get_species.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,666 copying build/scripts-3.11/rna_mq_rsRNASP.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,668 copying build/scripts-3.11/pymol_preview_generator.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,671 copying build/scripts-3.11/rna_mq_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,674 copying build/scripts-3.11/rna_clarna_run.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,678 copying build/scripts-3.11/rna_df_csv_sort.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,680 copying build/scripts-3.11/rna_pdb_edit_occupancy_bfactor.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,683 copying build/scripts-3.11/rna_helix_vis.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,685 copying build/scripts-3.11/rna_plot_heatmap.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,688 copying build/scripts-3.11/rna_simrnaweb_download_job.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,691 copying build/scripts-3.11/rna_simrna_lowest.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,693 copying build/scripts-3.11/rna_ok_mail.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,696 copying build/scripts-3.11/rna_align_coverage.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,698 copying build/scripts-3.11/rna_rosetta_get_score.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,701 copying build/scripts-3.11/trx_score_onCol.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,703 copying build/scripts-3.11/rna_align_get_ss_from_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,706 copying build/scripts-3.11/rna_pdb_fetch_header.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,708 copying build/scripts-3.11/rna_standardize.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,711 copying build/scripts-3.11/rna_plot_dendogram.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,714 copying build/scripts-3.11/rna_clarna_app.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,716 copying build/scripts-3.11/rna_df_concat.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,719 copying build/scripts-3.11/random_assignment_of_nucleotides.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,722 copying build/scripts-3.11/rna_plot_alignment_bounds.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,725 copying build/scripts-3.11/rna_mq_dfire.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,728 copying build/scripts-3.11/rna_mq_simrna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,730 copying build/scripts-3.11/rna_calc_fenergy.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,733 copying build/scripts-3.11/rna_align_sto2csv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,735 copying build/scripts-3.11/rna_secondary_structure_prediction.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,737 copying build/scripts-3.11/rna_rosetta_silent_file_sort_and_select.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,739 copying build/scripts-3.11/rna_plot_hist.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,742 copying build/scripts-3.11/rna_mq_rnakb.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,744 copying build/scripts-3.11/rna_rosetta_n.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,746 copying build/scripts-3.11/rna_traj_nohetm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,749 copying build/scripts-3.11/rna_mq_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,751 copying build/scripts-3.11/rna_alignment_r2r.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,753 copying build/scripts-3.11/rna_calc_evo_rmsd.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,756 copying build/scripts-3.11/rna_calc_inf.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,759 copying build/scripts-3.11/rna_mq_eSCORE.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,761 copying build/scripts-3.11/rna_pdb_tools.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,765 copying build/scripts-3.11/rna_align_fetch_cm.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,768 copying build/scripts-3.11/rna_rosetta_extract_lowscore_decoys.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,770 copying build/scripts-3.11/rna_pairs_diff.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,772 copying build/scripts-3.11/rna_pk_simrna_to_one_line.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,775 copying build/scripts-3.11/rna_sali2dotbracket.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,778 copying build/scripts-3.11/rna_ok -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,780 copying build/scripts-3.11/rna_df_merge_two.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,783 copying build/scripts-3.11/rna_pdb_seq.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,786 copying build/scripts-3.11/pymol_color_by_conserv.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,788 copying build/scripts-3.11/rna_plot_boxplotlike.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,791 copying build/scripts-3.11/reverse.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,793 copying build/scripts-3.11/rna_cal_rmsd_trafl_plot.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,796 copying build/scripts-3.11/rna_pdb_fetch.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,798 copying build/scripts-3.11/rna_alignment_process_id.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,801 copying build/scripts-3.11/rna_mq_farna.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,804 copying build/scripts-3.11/rna_clarna2graph.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,807 copying build/scripts-3.11/rna_tools_demo.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,810 copying build/scripts-3.11/rna_calc_rmsd_biopython.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,814 copying build/scripts-3.11/rna_mq_remote.sh -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,817 copying build/scripts-3.11/translate.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,819 copying build/scripts-3.11/rna_df_merge_on.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,822 copying build/scripts-3.11/rna_add_chain.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,825 copying build/scripts-3.11/rna_rosetta_silent_random.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,827 copying build/scripts-3.11/rna_align_strip_stk.py -> build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts 2026-03-13T22:09:50,830 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_test_cuda.py to 755 2026-03-13T22:09:50,831 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_df_merge.py to 755 2026-03-13T22:09:50,832 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_gromacs_ready.py to 755 2026-03-13T22:09:50,832 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_calc_hbonds.py to 755 2026-03-13T22:09:50,833 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_exp.py to 755 2026-03-13T22:09:50,834 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_calc_rmsd_all_vs_all.py to 755 2026-03-13T22:09:50,835 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_minimize.py to 755 2026-03-13T22:09:50,836 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/triplexibility2.py to 755 2026-03-13T22:09:50,837 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_dict2fasta.py to 755 2026-03-13T22:09:50,838 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_foldability.py to 755 2026-03-13T22:09:50,839 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_silent_split.py to 755 2026-03-13T22:09:50,840 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_refinement.py to 755 2026-03-13T22:09:50,841 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/triplexibility.py to 755 2026-03-13T22:09:50,842 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_find_core.py to 755 2026-03-13T22:09:50,843 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_prediction_significance.py to 755 2026-03-13T22:09:50,844 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_mfa2sto.py to 755 2026-03-13T22:09:50,845 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_workflow.py to 755 2026-03-13T22:09:50,846 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pkd2kd.py to 755 2026-03-13T22:09:50,847 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pdb_merge_into_one.py to 755 2026-03-13T22:09:50,848 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_rasp.py to 755 2026-03-13T22:09:50,849 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_kd2dG.py to 755 2026-03-13T22:09:50,850 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_find_seq_in_alignment.py to 755 2026-03-13T22:09:50,851 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_kd2pkd.py to 755 2026-03-13T22:09:50,852 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/pdbs_measure_atom_dists.py to 755 2026-03-13T22:09:50,853 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/select_seq_fromBLAStn_6outfm.py to 755 2026-03-13T22:09:50,854 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_clarna_compare.py to 755 2026-03-13T22:09:50,855 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pdb_merge_structure_with_fragments.py to 755 2026-03-13T22:09:50,856 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pairs2SimRNArestrs.py to 755 2026-03-13T22:09:50,857 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_rna3dcnn.py to 755 2026-03-13T22:09:50,857 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_traj_range.py to 755 2026-03-13T22:09:50,858 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_extract.py to 755 2026-03-13T22:09:50,859 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_check_progress.py to 755 2026-03-13T22:09:50,860 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pdb_inspect.py to 755 2026-03-13T22:09:50,861 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_md.py to 755 2026-03-13T22:09:50,862 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_calc_rmsd_multi_targets.py to 755 2026-03-13T22:09:50,863 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_min.py to 755 2026-03-13T22:09:50,864 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_wx_collect.py to 755 2026-03-13T22:09:50,865 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_pdb_replace.py to 755 2026-03-13T22:09:50,866 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_simrna_extract.py to 755 2026-03-13T22:09:50,867 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_seq_to_alignment.py to 755 2026-03-13T22:09:50,868 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/renum_pdb_to_aln.py to 755 2026-03-13T22:09:50,869 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_download_rfam.py to 755 2026-03-13T22:09:50,870 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/trx_score.py to 755 2026-03-13T22:09:50,871 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/trx_score_allvsall.py to 755 2026-03-13T22:09:50,872 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_cluster.py to 755 2026-03-13T22:09:50,873 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_ec2x.py to 755 2026-03-13T22:09:50,874 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/trx_mutagen.py to 755 2026-03-13T22:09:50,875 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_head.py to 755 2026-03-13T22:09:50,876 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_cif2pdb.py to 755 2026-03-13T22:09:50,877 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_farfar2.py to 755 2026-03-13T22:09:50,878 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_simrna_cluster.py to 755 2026-03-13T22:09:50,879 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_plot_density.py to 755 2026-03-13T22:09:50,880 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_torsions.py to 755 2026-03-13T22:09:50,881 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_calc_rmsd.py to 755 2026-03-13T22:09:50,882 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_ss_get_bps.py to 755 2026-03-13T22:09:50,883 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_collect.py to 755 2026-03-13T22:09:50,883 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/diffpdb.py to 755 2026-03-13T22:09:50,884 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_filter.py to 755 2026-03-13T22:09:50,885 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/clarna.py to 755 2026-03-13T22:09:50,885 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_clashscore.py to 755 2026-03-13T22:09:50,886 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/trx_mutagen_allvsall.py to 755 2026-03-13T22:09:50,887 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_traj_n.py to 755 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build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_x3dna.py to 755 2026-03-13T22:09:50,893 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_calc_rmsd_trafl.py to 755 2026-03-13T22:09:50,894 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/pymol_preview_install.py to 755 2026-03-13T22:09:50,894 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_clanstix.py to 755 2026-03-13T22:09:50,895 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_draw_edges.py to 755 2026-03-13T22:09:50,896 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_openfold_json_to_cif.py to 755 2026-03-13T22:09:50,897 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_alignment_get_species.py to 755 2026-03-13T22:09:50,897 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_mq_rsRNASP.py to 755 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build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_add_chain.py to 755 2026-03-13T22:09:50,935 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_rosetta_silent_random.py to 755 2026-03-13T22:09:50,935 changing mode of build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.data/scripts/rna_align_strip_stk.py to 755 2026-03-13T22:09:50,947 creating build/bdist.linux-armv7l/wheel/rna_tools-3.27.2.dist-info/WHEEL 2026-03-13T22:09:50,950 creating '/tmp/pip-wheel-u9u1g52h/.tmp-tikwfgaa/rna_tools-3.27.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-13T22:09:50,953 adding 'rna_tools/BlastPDB.py' 2026-03-13T22:09:50,954 adding 'rna_tools/RfamSearch.py' 2026-03-13T22:09:50,956 adding 'rna_tools/SecondaryStructure.py' 2026-03-13T22:09:50,960 adding 'rna_tools/Seq.py' 2026-03-13T22:09:50,961 adding 'rna_tools/__init__.py' 2026-03-13T22:09:50,962 adding 'rna_tools/_version.py' 2026-03-13T22:09:50,964 adding 'rna_tools/pytest.ini' 2026-03-13T22:09:51,012 adding 'rna_tools/rchie.png' 2026-03-13T22:09:51,015 adding 'rna_tools/rna_calc_fenergy.py' 2026-03-13T22:09:51,017 adding 'rna_tools/rna_cif2pdb.py' 2026-03-13T22:09:51,018 adding 'rna_tools/rna_dot2ct.py' 2026-03-13T22:09:51,020 adding 'rna_tools/rna_pdb_fetch.py' 2026-03-13T22:09:51,021 adding 'rna_tools/rna_pdb_fetch_header.py' 2026-03-13T22:09:51,023 adding 'rna_tools/rna_pdb_inspect.py' 2026-03-13T22:09:51,024 adding 'rna_tools/rna_pdb_replace.py' 2026-03-13T22:09:51,026 adding 'rna_tools/rna_pdb_seq.py' 2026-03-13T22:09:51,027 adding 'rna_tools/rna_pdb_seq2.py' 2026-03-13T22:09:51,032 adding 'rna_tools/rna_pdb_tools.py' 2026-03-13T22:09:51,034 adding 'rna_tools/rna_secondary_structure_prediction.py' 2026-03-13T22:09:51,036 adding 'rna_tools/rna_simrnaweb_download_job.py' 2026-03-13T22:09:51,038 adding 'rna_tools/rna_standardize.py' 2026-03-13T22:09:51,039 adding 'rna_tools/rna_tools_config.py' 2026-03-13T22:09:51,049 adding 'rna_tools/rna_tools_lib.py' 2026-03-13T22:09:51,051 adding 'rna_tools/rna_tools_test_all.py' 2026-03-13T22:09:51,053 adding 'rna_tools/rna_torsions.py' 2026-03-13T22:09:51,054 adding 'rna_tools/shell_rc.sh' 2026-03-13T22:09:51,055 adding 'rna_tools/stats.py' 2026-03-13T22:09:51,056 adding 'rna_tools/test.sh' 2026-03-13T22:09:51,057 adding 'rna_tools/update_readme.py' 2026-03-13T22:09:51,071 adding 'rna_tools/data/260c8ff6-f24e-4eff-9760-1831407fc770_ALL_thrs5.30A_clust01-000001_AA.pdb' 2026-03-13T22:09:51,072 adding 'rna_tools/data/A.pdb' 2026-03-13T22:09:51,074 adding 'rna_tools/data/ACGU.pdb' 2026-03-13T22:09:51,075 adding 'rna_tools/data/C.pdb' 2026-03-13T22:09:51,077 adding 'rna_tools/data/G.pdb' 2026-03-13T22:09:51,078 adding 'rna_tools/data/PO3_inner.pdb' 2026-03-13T22:09:51,079 adding 'rna_tools/data/U.pdb' 2026-03-13T22:09:51,080 adding 'rna_tools/data/o2prim.pdb' 2026-03-13T22:09:51,082 adding 'rna_tools/data/op4.pdb' 2026-03-13T22:09:51,083 adding 'rna_tools/data/pdb_ids.txt' 2026-03-13T22:09:51,084 adding 'rna_tools/data/rna_pdb_errors.csv' 2026-03-13T22:09:51,085 adding 'rna_tools/data/shape.txt' 2026-03-13T22:09:51,087 adding 'rna_tools/tests/test_eval.py' 2026-03-13T22:09:51,088 adding 'rna_tools/tests/test_rna_ss_pred.sh' 2026-03-13T22:09:51,089 adding 'rna_tools/tests/test_rnafold.py' 2026-03-13T22:09:51,091 adding 'rna_tools/tests/test_seq_cyclefold.py' 2026-03-13T22:09:51,092 adding 'rna_tools/tests/test_seq_mcfold.py' 2026-03-13T22:09:51,093 adding 'rna_tools/tests/test_seq_mcfold2.py' 2026-03-13T22:09:51,107 adding 'rna_tools/tests/test_import_module/rchie.png' 2026-03-13T22:09:51,109 adding 'rna_tools/tests/test_import_module/test_import_rna_tools.py' 2026-03-13T22:09:51,110 adding 'rna_tools/tests/test_import_module/test_data/RF00167.stockholm.sto' 2026-03-13T22:09:51,113 adding 'rna_tools/tools/__init__.py' 2026-03-13T22:09:51,115 adding 'rna_tools/tools/ClashCalc/.gitignore' 2026-03-13T22:09:51,116 adding 'rna_tools/tools/ClashCalc/ClashCalc.py' 2026-03-13T22:09:51,117 adding 'rna_tools/tools/ClashCalc/README.md' 2026-03-13T22:09:51,118 adding 'rna_tools/tools/ClashCalc/__init__.py' 2026-03-13T22:09:51,270 adding 'rna_tools/tools/ClashCalc/test_data/no_clash.pdb' 2026-03-13T22:09:51,345 adding 'rna_tools/tools/ClashCalc/test_data/prot-na_2392.pdb' 2026-03-13T22:09:51,436 adding 'rna_tools/tools/ClashCalc/test_data/super_clash.pdb' 2026-03-13T22:09:51,447 adding 'rna_tools/tools/PyMOL4RNA/PyMOL4RNA.py' 2026-03-13T22:09:51,450 adding 'rna_tools/tools/PyMOL4RNA/PyMOL4Spliceosome.py' 2026-03-13T22:09:51,451 adding 'rna_tools/tools/PyMOL4RNA/README.md' 2026-03-13T22:09:51,454 adding 'rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2020.ipynb' 2026-03-13T22:09:51,458 adding 'rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL-2022.ipynb' 2026-03-13T22:09:51,461 adding 'rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.csv' 2026-03-13T22:09:51,466 adding 'rna_tools/tools/PyMOL4RNA/Spliceosome_PyMOL.ipynb' 2026-03-13T22:09:51,469 adding 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'rna_tools/tools/mini_moderna3/COPYING' 2026-03-13T22:09:55,275 adding 'rna_tools/tools/mini_moderna3/MANIFEST.in' 2026-03-13T22:09:55,276 adding 'rna_tools/tools/mini_moderna3/README.md' 2026-03-13T22:09:55,277 adding 'rna_tools/tools/mini_moderna3/__init__.py' 2026-03-13T22:09:55,281 adding 'rna_tools/tools/mini_moderna3/moderna/CheckPdb.py' 2026-03-13T22:09:55,282 adding 'rna_tools/tools/mini_moderna3/moderna/Constants.py' 2026-03-13T22:09:55,284 adding 'rna_tools/tools/mini_moderna3/moderna/FragmentInsertion.py' 2026-03-13T22:09:55,285 adding 'rna_tools/tools/mini_moderna3/moderna/Helix.py' 2026-03-13T22:09:55,287 adding 'rna_tools/tools/mini_moderna3/moderna/ModelingRecipe.py' 2026-03-13T22:09:55,290 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaFragment.py' 2026-03-13T22:09:55,292 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaStructure.py' 2026-03-13T22:09:55,294 adding 'rna_tools/tools/mini_moderna3/moderna/ModernaSuperimposer.py' 2026-03-13T22:09:55,296 adding 'rna_tools/tools/mini_moderna3/moderna/PdbConverter.py' 2026-03-13T22:09:55,297 adding 'rna_tools/tools/mini_moderna3/moderna/RNAChain.py' 2026-03-13T22:09:55,300 adding 'rna_tools/tools/mini_moderna3/moderna/RNAModel.py' 2026-03-13T22:09:55,302 adding 'rna_tools/tools/mini_moderna3/moderna/RNAResidue.py' 2026-03-13T22:09:55,304 adding 'rna_tools/tools/mini_moderna3/moderna/Renumerator.py' 2026-03-13T22:09:55,305 adding 'rna_tools/tools/mini_moderna3/moderna/Renumerator_new.py' 2026-03-13T22:09:55,306 adding 'rna_tools/tools/mini_moderna3/moderna/Template.py' 2026-03-13T22:09:55,308 adding 'rna_tools/tools/mini_moderna3/moderna/__init__.py' 2026-03-13T22:09:55,309 adding 'rna_tools/tools/mini_moderna3/moderna/_version.py' 2026-03-13T22:09:55,314 adding 'rna_tools/tools/mini_moderna3/moderna/commands.py' 2026-03-13T22:09:55,316 adding 'rna_tools/tools/mini_moderna3/moderna/moderna.py' 2026-03-13T22:09:55,319 adding 'rna_tools/tools/mini_moderna3/moderna/analyze/BasePairCalculator.py' 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'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GA.pdb' 2026-03-13T22:09:55,551 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_GG.pdb' 2026-03-13T22:09:55,552 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UA.pdb' 2026-03-13T22:09:55,554 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UG.pdb' 2026-03-13T22:09:55,555 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWH_UU.pdb' 2026-03-13T22:09:55,557 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AG.pdb' 2026-03-13T22:09:55,558 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_AU.pdb' 2026-03-13T22:09:55,560 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWHa_UA.pdb' 2026-03-13T22:09:55,561 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AA.pdb' 2026-03-13T22:09:55,562 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AC.pdb' 2026-03-13T22:09:55,564 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AG.pdb' 2026-03-13T22:09:55,565 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_AU.pdb' 2026-03-13T22:09:55,567 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CA.pdb' 2026-03-13T22:09:55,568 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CC.pdb' 2026-03-13T22:09:55,570 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CG.pdb' 2026-03-13T22:09:55,571 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_CU.pdb' 2026-03-13T22:09:55,572 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GA.pdb' 2026-03-13T22:09:55,574 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GC.pdb' 2026-03-13T22:09:55,575 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GG.pdb' 2026-03-13T22:09:55,577 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_GU.pdb' 2026-03-13T22:09:55,578 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UA.pdb' 2026-03-13T22:09:55,580 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UC.pdb' 2026-03-13T22:09:55,581 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UG.pdb' 2026-03-13T22:09:55,583 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWS_UU.pdb' 2026-03-13T22:09:55,584 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_AC.pdb' 2026-03-13T22:09:55,586 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_CC.pdb' 2026-03-13T22:09:55,588 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSa_GU.pdb' 2026-03-13T22:09:55,589 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWSb_GU.pdb' 2026-03-13T22:09:55,591 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AA.pdb' 2026-03-13T22:09:55,593 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AC.pdb' 2026-03-13T22:09:55,594 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AG.pdb' 2026-03-13T22:09:55,596 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_AU.pdb' 2026-03-13T22:09:55,597 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CA.pdb' 2026-03-13T22:09:55,599 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CC.pdb' 2026-03-13T22:09:55,600 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CG.pdb' 2026-03-13T22:09:55,602 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_CU.pdb' 2026-03-13T22:09:55,603 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GA.pdb' 2026-03-13T22:09:55,604 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GC.pdb' 2026-03-13T22:09:55,606 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_GU.pdb' 2026-03-13T22:09:55,607 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UA.pdb' 2026-03-13T22:09:55,609 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UC.pdb' 2026-03-13T22:09:55,610 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UG.pdb' 2026-03-13T22:09:55,612 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWW_UU.pdb' 2026-03-13T22:09:55,613 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AC.pdb' 2026-03-13T22:09:55,615 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_AG.pdb' 2026-03-13T22:09:55,616 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CA.pdb' 2026-03-13T22:09:55,618 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CG.pdb' 2026-03-13T22:09:55,619 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_CU.pdb' 2026-03-13T22:09:55,621 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GA.pdb' 2026-03-13T22:09:55,622 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GC.pdb' 2026-03-13T22:09:55,623 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_GU.pdb' 2026-03-13T22:09:55,625 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UC.pdb' 2026-03-13T22:09:55,626 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWa_UG.pdb' 2026-03-13T22:09:55,628 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AC.pdb' 2026-03-13T22:09:55,629 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_AG.pdb' 2026-03-13T22:09:55,631 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CA.pdb' 2026-03-13T22:09:55,632 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_CU.pdb' 2026-03-13T22:09:55,634 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GA.pdb' 2026-03-13T22:09:55,635 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_GU.pdb' 2026-03-13T22:09:55,636 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UC.pdb' 2026-03-13T22:09:55,638 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/cWWb_UG.pdb' 2026-03-13T22:09:55,639 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AA.pdb' 2026-03-13T22:09:55,641 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AC.pdb' 2026-03-13T22:09:55,642 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AG.pdb' 2026-03-13T22:09:55,644 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_AU.pdb' 2026-03-13T22:09:55,645 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CA.pdb' 2026-03-13T22:09:55,646 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CG.pdb' 2026-03-13T22:09:55,648 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_CU.pdb' 2026-03-13T22:09:55,650 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GA.pdb' 2026-03-13T22:09:55,651 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GC.pdb' 2026-03-13T22:09:55,653 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_GG.pdb' 2026-03-13T22:09:55,654 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UA.pdb' 2026-03-13T22:09:55,656 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHH_UC.pdb' 2026-03-13T22:09:55,657 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_AU.pdb' 2026-03-13T22:09:55,659 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_CG.pdb' 2026-03-13T22:09:55,660 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_GC.pdb' 2026-03-13T22:09:55,661 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHa_UA.pdb' 2026-03-13T22:09:55,663 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_AU.pdb' 2026-03-13T22:09:55,664 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHHb_UA.pdb' 2026-03-13T22:09:55,666 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AA.pdb' 2026-03-13T22:09:55,667 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AC.pdb' 2026-03-13T22:09:55,668 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AG.pdb' 2026-03-13T22:09:55,670 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_AU.pdb' 2026-03-13T22:09:55,671 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CA.pdb' 2026-03-13T22:09:55,673 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CC.pdb' 2026-03-13T22:09:55,674 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_CU.pdb' 2026-03-13T22:09:55,676 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_GG.pdb' 2026-03-13T22:09:55,677 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UA.pdb' 2026-03-13T22:09:55,679 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHS_UG.pdb' 2026-03-13T22:09:55,680 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AG.pdb' 2026-03-13T22:09:55,682 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_AU.pdb' 2026-03-13T22:09:55,683 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSa_GG.pdb' 2026-03-13T22:09:55,684 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tHSb_AG.pdb' 2026-03-13T22:09:55,686 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AA.pdb' 2026-03-13T22:09:55,687 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AC.pdb' 2026-03-13T22:09:55,689 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AG.pdb' 2026-03-13T22:09:55,690 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_AU.pdb' 2026-03-13T22:09:55,692 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GA.pdb' 2026-03-13T22:09:55,693 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GC.pdb' 2026-03-13T22:09:55,695 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GG.pdb' 2026-03-13T22:09:55,696 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tSS_GU.pdb' 2026-03-13T22:09:55,697 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AA.pdb' 2026-03-13T22:09:55,699 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_AG.pdb' 2026-03-13T22:09:55,701 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CA.pdb' 2026-03-13T22:09:55,702 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CC.pdb' 2026-03-13T22:09:55,704 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_CG.pdb' 2026-03-13T22:09:55,705 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GG.pdb' 2026-03-13T22:09:55,707 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_GU.pdb' 2026-03-13T22:09:55,708 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UA.pdb' 2026-03-13T22:09:55,710 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UG.pdb' 2026-03-13T22:09:55,711 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWH_UU.pdb' 2026-03-13T22:09:55,712 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CA.pdb' 2026-03-13T22:09:55,714 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_CG.pdb' 2026-03-13T22:09:55,715 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWHa_UA.pdb' 2026-03-13T22:09:55,717 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AA.pdb' 2026-03-13T22:09:55,718 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AC.pdb' 2026-03-13T22:09:55,720 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AG.pdb' 2026-03-13T22:09:55,721 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_AU.pdb' 2026-03-13T22:09:55,722 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CA.pdb' 2026-03-13T22:09:55,724 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CC.pdb' 2026-03-13T22:09:55,725 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CG.pdb' 2026-03-13T22:09:55,726 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_CU.pdb' 2026-03-13T22:09:55,728 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GC.pdb' 2026-03-13T22:09:55,729 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_GU.pdb' 2026-03-13T22:09:55,731 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UA.pdb' 2026-03-13T22:09:55,732 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UC.pdb' 2026-03-13T22:09:55,734 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UG.pdb' 2026-03-13T22:09:55,735 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWS_UU.pdb' 2026-03-13T22:09:55,737 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWSa_AG.pdb' 2026-03-13T22:09:55,738 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AA.pdb' 2026-03-13T22:09:55,739 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AC.pdb' 2026-03-13T22:09:55,741 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_AU.pdb' 2026-03-13T22:09:55,742 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CA.pdb' 2026-03-13T22:09:55,743 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CC.pdb' 2026-03-13T22:09:55,745 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CG.pdb' 2026-03-13T22:09:55,746 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_CU.pdb' 2026-03-13T22:09:55,748 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GC.pdb' 2026-03-13T22:09:55,749 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GG.pdb' 2026-03-13T22:09:55,751 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_GU.pdb' 2026-03-13T22:09:55,752 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UA.pdb' 2026-03-13T22:09:55,753 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UC.pdb' 2026-03-13T22:09:55,755 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UG.pdb' 2026-03-13T22:09:55,756 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/tWW_UU.pdb' 2026-03-13T22:09:55,759 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AA.pdb' 2026-03-13T22:09:55,760 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AC.pdb' 2026-03-13T22:09:55,762 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AG.pdb' 2026-03-13T22:09:55,764 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_AU.pdb' 2026-03-13T22:09:55,765 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CC.pdb' 2026-03-13T22:09:55,767 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_CU.pdb' 2026-03-13T22:09:55,768 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GG.pdb' 2026-03-13T22:09:55,770 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_GU.pdb' 2026-03-13T22:09:55,772 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s33_UU.pdb' 2026-03-13T22:09:55,773 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AA.pdb' 2026-03-13T22:09:55,775 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AC.pdb' 2026-03-13T22:09:55,777 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AG.pdb' 2026-03-13T22:09:55,778 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_AU.pdb' 2026-03-13T22:09:55,780 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CC.pdb' 2026-03-13T22:09:55,781 adding 'rna_tools/tools/mini_moderna3/moderna/data/base_pairs/stacking/s35_CG.pdb' 2026-03-13T22:09:55,783 adding 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'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_flat_0_aaaaaa_40x100.png' 2026-03-13T22:10:05,961 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_55_fbf9ee_1x400.png' 2026-03-13T22:10:05,962 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_65_ffffff_1x400.png' 2026-03-13T22:10:05,963 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_dadada_1x400.png' 2026-03-13T22:10:05,964 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-bg_glass_75_e6e6e6_1x400.png' 2026-03-13T22:10:05,965 adding 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'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_454545_256x240.png' 2026-03-13T22:10:05,974 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_888888_256x240.png' 2026-03-13T22:10:05,976 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_cd0a0a_256x240.png' 2026-03-13T22:10:05,978 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/css/custom-theme/images/ui-icons_f6cf3b_256x240.png' 2026-03-13T22:10:05,981 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/demo.js' 2026-03-13T22:10:05,993 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-1.8.3.min.js' 2026-03-13T22:10:06,022 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/js/jquery-ui-1.9.2.custom.min.js' 2026-03-13T22:10:06,026 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/index.html' 2026-03-13T22:10:06,028 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/css/ui.daterangepicker.css' 2026-03-13T22:10:06,033 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/date.js' 2026-03-13T22:10:06,035 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.compressed.js' 2026-03-13T22:10:06,037 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-Date-Range-Picker/js/daterangepicker.jQuery.js' 2026-03-13T22:10:06,039 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/css/enhanced.css' 2026-03-13T22:10:06,041 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-generic.gif' 2026-03-13T22:10:06,042 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-image.gif' 2026-03-13T22:10:06,044 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-media.gif' 2026-03-13T22:10:06,045 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/images/icon-zip.gif' 2026-03-13T22:10:06,047 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/enhance.min.js' 2026-03-13T22:10:06,049 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/jQuery-UI-FileInput/js/fileinput.jquery.js' 2026-03-13T22:10:06,051 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.bgiframe-2.1.3-pre.js' 2026-03-13T22:10:06,052 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.mousewheel.min.js' 2026-03-13T22:10:06,056 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.css' 2026-03-13T22:10:06,082 adding 'rna_tools/tools/webserver-engine/app/static/app/addyosmani-jquery-ui-bootstrap-71f2e47/third-party/wijmo/jquery.wijmo-open.1.5.0.min.js' 2026-03-13T22:10:06,086 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.css' 2026-03-13T22:10:06,088 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap-responsive.min.css' 2026-03-13T22:10:06,099 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.css' 2026-03-13T22:10:06,109 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/css/bootstrap.min.css' 2026-03-13T22:10:06,112 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings-white.png' 2026-03-13T22:10:06,121 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/img/glyphicons-halflings.png' 2026-03-13T22:10:06,181 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap/js/bootstrap.js' 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'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/css/bootstrap.min.css' 2026-03-13T22:10:06,219 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings-white.png' 2026-03-13T22:10:06,222 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/img/glyphicons-halflings.png' 2026-03-13T22:10:06,224 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/aplication.js' 2026-03-13T22:10:06,227 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/js/bootstrap.min.js' 2026-03-13T22:10:06,228 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-filestyle/test/upload/.folder' 2026-03-13T22:10:06,230 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.css' 2026-03-13T22:10:06,232 adding 'rna_tools/tools/webserver-engine/app/static/app/bootstrap-fileupload/bootstrap-fileupload.js' 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'rna_tools/tools/webserver-engine/app/static/app/demo/21_Adamiak_1_rpr.pdb' 2026-03-13T22:10:06,383 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_ChenHighLig_1_rpr.pdb' 2026-03-13T22:10:06,395 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_Das_1_rpr.pdb' 2026-03-13T22:10:06,408 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/21_solution_2_rpr.pdb' 2026-03-13T22:10:06,433 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.pdb' 2026-03-13T22:10:06,435 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi.txt' 2026-03-13T22:10:06,437 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_pred.txt' 2026-03-13T22:10:06,438 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_rnafold.txt' 2026-03-13T22:10:06,439 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/2gdi_s.txt' 2026-03-13T22:10:06,457 adding 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adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop.pdb' 2026-03-13T22:10:06,479 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_helix.pdb' 2026-03-13T22:10:06,480 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/tetraloop_mdr.pdb' 2026-03-13T22:10:06,482 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/to-replace.pdb' 2026-03-13T22:10:06,483 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/triple-ACA.pdb' 2026-03-13T22:10:06,484 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/unmodified_tRNAPhe_restraints.txt' 2026-03-13T22:10:06,513 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_CWC2_C.pdb' 2026-03-13T22:10:06,559 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Cwc2_Exon_Intron.pdb' 2026-03-13T22:10:06,565 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_C.pdb' 2026-03-13T22:10:06,580 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron.pdb' 2026-03-13T22:10:06,595 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Exon_Intron_rpr.pdb' 2026-03-13T22:10:06,605 adding 'rna_tools/tools/webserver-engine/app/static/app/demo/yC_5lj3_Intron_C.pdb' 2026-03-13T22:10:06,607 adding 'rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.css' 2026-03-13T22:10:06,630 adding 'rna_tools/tools/webserver-engine/app/static/app/dropzone/dropzone.min.js' 2026-03-13T22:10:06,634 adding 'rna_tools/tools/webserver-engine/app/static/app/help/1evv-ss-w11rst2_A.rest' 2026-03-13T22:10:06,642 adding 'rna_tools/tools/webserver-engine/app/static/app/help/submit_seq_w_ss_restraints.png' 2026-03-13T22:10:06,647 adding 'rna_tools/tools/webserver-engine/app/static/app/img/01.jpg' 2026-03-13T22:10:06,665 adding 'rna_tools/tools/webserver-engine/app/static/app/img/01.png' 2026-03-13T22:10:06,677 adding 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'rna_tools/tools/webserver-engine/app/templates/rpl.html' 2026-03-13T22:10:06,846 adding 'rna_tools/tools/webserver-engine/app/templates/rpr.html' 2026-03-13T22:10:06,847 adding 'rna_tools/tools/webserver-engine/app/templates/seq.html' 2026-03-13T22:10:06,848 adding 'rna_tools/tools/webserver-engine/app/templates/ss.html' 2026-03-13T22:10:06,850 adding 'rna_tools/tools/webserver-engine/app/templates/swap.html' 2026-03-13T22:10:06,851 adding 'rna_tools/tools/webserver-engine/app/templates/tocif.html' 2026-03-13T22:10:06,853 adding 'rna_tools/tools/webserver-engine/app/templates/tools.html' 2026-03-13T22:10:06,855 adding 'rna_tools/tools/webserver-engine/app/templates/topdb.html' 2026-03-13T22:10:06,857 adding 'rna_tools/tools/webserver-engine/app/templates/archive/progress.html' 2026-03-13T22:10:06,858 adding 'rna_tools/tools/webserver-engine/app/templates/archive/result.html' 2026-03-13T22:10:06,860 adding 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adding 'rna_tools-3.27.2.dist-info/LICENSE' 2026-03-13T22:10:07,525 adding 'rna_tools-3.27.2.dist-info/METADATA' 2026-03-13T22:10:07,526 adding 'rna_tools-3.27.2.dist-info/WHEEL' 2026-03-13T22:10:07,527 adding 'rna_tools-3.27.2.dist-info/top_level.txt' 2026-03-13T22:10:07,559 adding 'rna_tools-3.27.2.dist-info/RECORD' 2026-03-13T22:10:08,176 removing build/bdist.linux-armv7l/wheel 2026-03-13T22:10:09,321 Building wheel for rna-tools (pyproject.toml): finished with status 'done' 2026-03-13T22:10:10,594 Created wheel for rna-tools: filename=rna_tools-3.27.2-py3-none-any.whl size=58417769 sha256=2198eb425b20a44836c71788e019fe82fe3c3c3b685fa3847a36c5f7cd5a7a5b 2026-03-13T22:10:10,595 Stored in directory: /tmp/pip-ephem-wheel-cache-r0mo61u0/wheels/2c/0d/12/be6b95a9d1ba9f712f9e4016cc3aebbe2c567e12669b2eb391 2026-03-13T22:10:10,683 Successfully built rna-tools 2026-03-13T22:10:12,411 Removed build tracker: '/tmp/pip-build-tracker-zxzkgclj'