2026-03-18T11:06:27,028 Created temporary directory: /tmp/pip-ephem-wheel-cache-tfarlo69 2026-03-18T11:06:27,030 Created temporary directory: /tmp/pip-build-tracker-urfj6vxp 2026-03-18T11:06:27,031 Initialized build tracking at /tmp/pip-build-tracker-urfj6vxp 2026-03-18T11:06:27,031 Created build tracker: /tmp/pip-build-tracker-urfj6vxp 2026-03-18T11:06:27,032 Entered build tracker: /tmp/pip-build-tracker-urfj6vxp 2026-03-18T11:06:27,032 Created temporary directory: /tmp/pip-wheel-bg45kw14 2026-03-18T11:06:27,035 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-18T11:06:27,038 Created temporary directory: /tmp/pip-ephem-wheel-cache-7vu2kjan 2026-03-18T11:06:27,059 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-18T11:06:27,063 2 location(s) to search for versions of omicverse: 2026-03-18T11:06:27,063 * https://pypi.org/simple/omicverse/ 2026-03-18T11:06:27,063 * https://www.piwheels.org/simple/omicverse/ 2026-03-18T11:06:27,063 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-18T11:06:27,064 Getting page https://pypi.org/simple/omicverse/ 2026-03-18T11:06:27,065 Found index url https://pypi.org/simple 2026-03-18T11:06:27,284 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-18T11:06:27,304 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-18T11:06:27,599 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-18T11:06:27,599 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-18T11:06:27,624 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-18T11:06:27,642 Collecting omicverse==2.0.0 2026-03-18T11:06:27,644 Created temporary directory: /tmp/pip-unpack-rudaefo1 2026-03-18T11:06:27,864 Downloading omicverse-2.0.0.tar.gz (11.8 MB) 2026-03-18T11:06:34,609 Added omicverse==2.0.0 from https://files.pythonhosted.org/packages/c6/88/09be0bfc391bdb179cf5e526c72050b5a230f5b3fb1d45e1f73f614b3309/omicverse-2.0.0.tar.gz to build tracker '/tmp/pip-build-tracker-urfj6vxp' 2026-03-18T11:06:34,617 Created temporary directory: /tmp/pip-build-env-jy83pv6o 2026-03-18T11:06:34,621 Installing build dependencies: started 2026-03-18T11:06:34,623 Running command pip subprocess to install build dependencies 2026-03-18T11:06:35,757 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-18T11:06:36,330 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-18T11:06:36,353 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-18T11:06:38,134 Collecting setuptools>=61 2026-03-18T11:06:38,212 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-18T11:06:38,476 Collecting wheel 2026-03-18T11:06:38,490 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-18T11:06:40,533 Collecting Cython 2026-03-18T11:06:41,373 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-18T11:06:41,866 Collecting packaging>=24.0 2026-03-18T11:06:41,884 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-18T11:06:44,830 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-18T11:06:52,330 Creating /tmp/pip-build-env-jy83pv6o/overlay/local/bin 2026-03-18T11:06:52,332 changing mode of /tmp/pip-build-env-jy83pv6o/overlay/local/bin/cygdb to 755 2026-03-18T11:06:52,334 changing mode of /tmp/pip-build-env-jy83pv6o/overlay/local/bin/cython to 755 2026-03-18T11:06:52,336 changing mode of /tmp/pip-build-env-jy83pv6o/overlay/local/bin/cythonize to 755 2026-03-18T11:06:52,462 changing mode of /tmp/pip-build-env-jy83pv6o/overlay/local/bin/wheel to 755 2026-03-18T11:06:52,490 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-18T11:06:52,868 Installing build dependencies: finished with status 'done' 2026-03-18T11:06:52,874 Getting requirements to build wheel: started 2026-03-18T11:06:52,875 Running command Getting requirements to build wheel 2026-03-18T11:06:53,591 /tmp/pip-build-env-jy83pv6o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-18T11:06:53,591 !! 2026-03-18T11:06:53,592 ******************************************************************************** 2026-03-18T11:06:53,593 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-18T11:06:53,594 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-18T11:06:53,594 or your builds will no longer be supported. 2026-03-18T11:06:53,595 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T11:06:53,596 ******************************************************************************** 2026-03-18T11:06:53,597 !! 2026-03-18T11:06:53,598 corresp(dist, value, root_dir) 2026-03-18T11:06:53,897 running egg_info 2026-03-18T11:06:53,903 writing omicverse.egg-info/PKG-INFO 2026-03-18T11:06:53,921 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-18T11:06:53,923 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-18T11:06:53,932 writing requirements to omicverse.egg-info/requires.txt 2026-03-18T11:06:53,933 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-18T11:06:54,189 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-18T11:06:54,330 reading manifest template 'MANIFEST.in' 2026-03-18T11:06:55,253 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-18T11:06:56,651 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-18T11:06:57,125 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-18T11:07:01,144 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-18T11:07:01,604 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-18T11:07:02,046 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-18T11:07:02,493 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-18T11:07:02,921 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-18T11:07:03,375 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-18T11:07:03,819 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-18T11:07:03,822 no previously-included directories found matching '.git' 2026-03-18T11:07:03,825 no previously-included directories found matching '.github' 2026-03-18T11:07:03,828 no previously-included directories found matching '.claude' 2026-03-18T11:07:03,831 no previously-included directories found matching '.pytest_cache' 2026-03-18T11:07:03,834 no previously-included directories found matching '.ruff_cache' 2026-03-18T11:07:03,837 no previously-included directories found matching '.vscode' 2026-03-18T11:07:03,840 no previously-included directories found matching 'docs' 2026-03-18T11:07:03,843 no previously-included directories found matching 'tests' 2026-03-18T11:07:03,846 no previously-included directories found matching 'OvIntelligence' 2026-03-18T11:07:03,849 no previously-included directories found matching 'READMEM' 2026-03-18T11:07:03,852 no previously-included directories found matching 'omicverse_guide' 2026-03-18T11:07:03,856 no previously-included directories found matching 'omicverse_web' 2026-03-18T11:07:03,859 no previously-included directories found matching 'tmp' 2026-03-18T11:07:03,862 no previously-included directories found matching 'tmp_omicverse' 2026-03-18T11:07:03,864 no previously-included directories found matching 'Skill_Seekers' 2026-03-18T11:07:03,870 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-18T11:07:03,878 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-18T11:07:03,884 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-18T11:07:03,884 adding license file 'LICENSE' 2026-03-18T11:07:03,956 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:04,072 Getting requirements to build wheel: finished with status 'done' 2026-03-18T11:07:04,075 Created temporary directory: /tmp/pip-modern-metadata-l3qn6x_s 2026-03-18T11:07:04,078 Preparing metadata (pyproject.toml): started 2026-03-18T11:07:04,079 Running command Preparing metadata (pyproject.toml) 2026-03-18T11:07:04,745 /tmp/pip-build-env-jy83pv6o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-18T11:07:04,745 !! 2026-03-18T11:07:04,746 ******************************************************************************** 2026-03-18T11:07:04,747 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-18T11:07:04,748 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-18T11:07:04,748 or your builds will no longer be supported. 2026-03-18T11:07:04,749 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T11:07:04,750 ******************************************************************************** 2026-03-18T11:07:04,751 !! 2026-03-18T11:07:04,752 corresp(dist, value, root_dir) 2026-03-18T11:07:05,035 running dist_info 2026-03-18T11:07:05,046 creating /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info 2026-03-18T11:07:05,048 writing /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/PKG-INFO 2026-03-18T11:07:05,065 writing dependency_links to /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/dependency_links.txt 2026-03-18T11:07:05,067 writing entry points to /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/entry_points.txt 2026-03-18T11:07:05,076 writing requirements to /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/requires.txt 2026-03-18T11:07:05,077 writing top-level names to /tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/top_level.txt 2026-03-18T11:07:05,078 writing manifest file '/tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:05,281 reading manifest file '/tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:05,283 reading manifest template 'MANIFEST.in' 2026-03-18T11:07:06,188 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-18T11:07:07,650 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-18T11:07:08,090 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-18T11:07:12,217 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-18T11:07:12,736 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-18T11:07:13,669 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-18T11:07:14,131 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-18T11:07:14,616 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-18T11:07:15,084 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-18T11:07:15,515 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-18T11:07:15,517 no previously-included directories found matching '.git' 2026-03-18T11:07:15,520 no previously-included directories found matching '.github' 2026-03-18T11:07:15,522 no previously-included directories found matching '.claude' 2026-03-18T11:07:15,525 no previously-included directories found matching '.pytest_cache' 2026-03-18T11:07:15,528 no previously-included directories found matching '.ruff_cache' 2026-03-18T11:07:15,530 no previously-included directories found matching '.vscode' 2026-03-18T11:07:15,532 no previously-included directories found matching 'docs' 2026-03-18T11:07:15,535 no previously-included directories found matching 'tests' 2026-03-18T11:07:15,538 no previously-included directories found matching 'OvIntelligence' 2026-03-18T11:07:15,540 no previously-included directories found matching 'READMEM' 2026-03-18T11:07:15,543 no previously-included directories found matching 'omicverse_guide' 2026-03-18T11:07:15,545 no previously-included directories found matching 'omicverse_web' 2026-03-18T11:07:15,548 no previously-included directories found matching 'tmp' 2026-03-18T11:07:15,550 no previously-included directories found matching 'tmp_omicverse' 2026-03-18T11:07:15,553 no previously-included directories found matching 'Skill_Seekers' 2026-03-18T11:07:15,557 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-18T11:07:15,563 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-18T11:07:15,567 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-18T11:07:15,568 adding license file 'LICENSE' 2026-03-18T11:07:15,623 writing manifest file '/tmp/pip-modern-metadata-l3qn6x_s/omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:15,626 creating '/tmp/pip-modern-metadata-l3qn6x_s/omicverse-2.0.0.dist-info' 2026-03-18T11:07:15,810 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-18T11:07:15,824 Source in /tmp/pip-wheel-bg45kw14/omicverse_42a08ef41b034109bf08589c952e10f3 has version 2.0.0, which satisfies requirement omicverse==2.0.0 from https://files.pythonhosted.org/packages/c6/88/09be0bfc391bdb179cf5e526c72050b5a230f5b3fb1d45e1f73f614b3309/omicverse-2.0.0.tar.gz 2026-03-18T11:07:15,825 Removed omicverse==2.0.0 from https://files.pythonhosted.org/packages/c6/88/09be0bfc391bdb179cf5e526c72050b5a230f5b3fb1d45e1f73f614b3309/omicverse-2.0.0.tar.gz from build tracker '/tmp/pip-build-tracker-urfj6vxp' 2026-03-18T11:07:15,849 Created temporary directory: /tmp/pip-unpack-h28_vsy2 2026-03-18T11:07:15,850 Building wheels for collected packages: omicverse 2026-03-18T11:07:15,854 Created temporary directory: /tmp/pip-wheel-jp504sgq 2026-03-18T11:07:15,855 Destination directory: /tmp/pip-wheel-jp504sgq 2026-03-18T11:07:15,857 Building wheel for omicverse (pyproject.toml): started 2026-03-18T11:07:15,858 Running command Building wheel for omicverse (pyproject.toml) 2026-03-18T11:07:16,472 /tmp/pip-build-env-jy83pv6o/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-18T11:07:16,472 !! 2026-03-18T11:07:16,473 ******************************************************************************** 2026-03-18T11:07:16,474 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-18T11:07:16,475 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-18T11:07:16,475 or your builds will no longer be supported. 2026-03-18T11:07:16,476 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T11:07:16,476 ******************************************************************************** 2026-03-18T11:07:16,477 !! 2026-03-18T11:07:16,478 corresp(dist, value, root_dir) 2026-03-18T11:07:16,737 running bdist_wheel 2026-03-18T11:07:16,759 running build 2026-03-18T11:07:16,759 running build_py 2026-03-18T11:07:16,766 creating build/lib/omicverse 2026-03-18T11:07:16,769 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-18T11:07:16,772 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-18T11:07:16,775 copying omicverse/claw.py -> build/lib/omicverse 2026-03-18T11:07:16,779 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-18T11:07:16,785 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-18T11:07:16,790 copying omicverse/cli.py -> build/lib/omicverse 2026-03-18T11:07:16,793 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-18T11:07:16,798 creating build/lib/omicverse/bulk2single 2026-03-18T11:07:16,800 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,806 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,810 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,815 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,822 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,868 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,871 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,874 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,877 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,880 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-18T11:07:16,884 creating build/lib/omicverse/utils 2026-03-18T11:07:16,886 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,889 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,892 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,895 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,900 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,907 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,920 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,925 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,927 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,931 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,936 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,941 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,947 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,955 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,962 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,968 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,972 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,975 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,984 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,989 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,995 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-18T11:07:16,999 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,002 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,005 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,008 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,010 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,013 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,016 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,019 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,027 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,036 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,039 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,043 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,047 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-18T11:07:17,053 creating build/lib/omicverse/io 2026-03-18T11:07:17,055 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-18T11:07:17,060 creating build/lib/omicverse/space 2026-03-18T11:07:17,062 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-18T11:07:17,065 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-18T11:07:17,068 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-18T11:07:17,071 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-18T11:07:17,074 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-18T11:07:17,079 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-18T11:07:17,084 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-18T11:07:17,087 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-18T11:07:17,090 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-18T11:07:17,092 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-18T11:07:17,095 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-18T11:07:17,097 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-18T11:07:17,101 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-18T11:07:17,103 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-18T11:07:17,107 creating build/lib/omicverse/datasets 2026-03-18T11:07:17,108 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-18T11:07:17,110 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-18T11:07:17,113 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-18T11:07:17,116 creating build/lib/omicverse/agent 2026-03-18T11:07:17,117 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-18T11:07:17,120 creating build/lib/omicverse/bulk 2026-03-18T11:07:17,121 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,123 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,125 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,128 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,130 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,133 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,135 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,138 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,140 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,151 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,153 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-18T11:07:17,156 creating build/lib/omicverse/popv 2026-03-18T11:07:17,157 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,160 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,162 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,164 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,166 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,168 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-18T11:07:17,172 creating build/lib/omicverse/llm 2026-03-18T11:07:17,173 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,177 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,180 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,184 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,186 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,190 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,195 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,197 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,200 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,202 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,204 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,206 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-18T11:07:17,212 creating build/lib/omicverse/external 2026-03-18T11:07:17,214 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-18T11:07:17,219 creating build/lib/omicverse/single 2026-03-18T11:07:17,221 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-18T11:07:17,224 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-18T11:07:17,226 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-18T11:07:17,229 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-18T11:07:17,234 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-18T11:07:17,238 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-18T11:07:17,240 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-18T11:07:17,245 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-18T11:07:17,251 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-18T11:07:17,255 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-18T11:07:17,259 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-18T11:07:17,267 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-18T11:07:17,270 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-18T11:07:17,273 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-18T11:07:17,277 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-18T11:07:17,280 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-18T11:07:17,283 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-18T11:07:17,285 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-18T11:07:17,289 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-18T11:07:17,292 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-18T11:07:17,295 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-18T11:07:17,300 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-18T11:07:17,303 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-18T11:07:17,305 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-18T11:07:17,308 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-18T11:07:17,311 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-18T11:07:17,314 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-18T11:07:17,317 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-18T11:07:17,320 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-18T11:07:17,324 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-18T11:07:17,327 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-18T11:07:17,331 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-18T11:07:17,335 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-18T11:07:17,339 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-18T11:07:17,342 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-18T11:07:17,346 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-18T11:07:17,349 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-18T11:07:17,352 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-18T11:07:17,355 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-18T11:07:17,359 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-18T11:07:17,364 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-18T11:07:17,368 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-18T11:07:17,370 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-18T11:07:17,374 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-18T11:07:17,378 creating build/lib/omicverse/data_files 2026-03-18T11:07:17,380 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-18T11:07:17,384 creating build/lib/omicverse/mcp 2026-03-18T11:07:17,386 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,389 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,393 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,395 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,400 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,403 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,406 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,409 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,411 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,415 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,417 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,420 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,422 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-18T11:07:17,425 creating build/lib/omicverse/biocontext 2026-03-18T11:07:17,426 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-18T11:07:17,429 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-18T11:07:17,431 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-18T11:07:17,434 creating build/lib/omicverse/jarvis 2026-03-18T11:07:17,435 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,438 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,440 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,443 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,445 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,447 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,449 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,452 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,455 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,456 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-18T11:07:17,459 creating build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,460 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,462 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,465 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,467 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,469 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,471 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,473 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,475 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,477 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:17,480 creating build/lib/omicverse/fm 2026-03-18T11:07:17,481 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-18T11:07:17,483 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-18T11:07:17,485 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-18T11:07:17,488 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-18T11:07:17,490 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-18T11:07:17,493 creating build/lib/omicverse/alignment 2026-03-18T11:07:17,494 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,496 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,499 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,501 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,503 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,505 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,507 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,509 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,511 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-18T11:07:17,514 creating build/lib/omicverse/pp 2026-03-18T11:07:17,515 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,517 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,520 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,522 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,525 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,527 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,530 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,532 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,535 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,537 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,540 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,542 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,544 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,548 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,550 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,552 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,555 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,558 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,562 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,564 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,566 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,569 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,571 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-18T11:07:17,574 creating build/lib/omicverse/pl 2026-03-18T11:07:17,575 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,580 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,584 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,586 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,589 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,594 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,596 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,602 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,604 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,608 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,611 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,614 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,616 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,618 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,623 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,626 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,628 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,631 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,633 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,636 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-18T11:07:17,639 creating build/lib/omicverse/utils/harness 2026-03-18T11:07:17,640 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,643 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,645 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,647 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,649 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,652 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,654 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-18T11:07:17,657 creating build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,658 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,660 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,662 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,665 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,667 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,670 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,672 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,674 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,677 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:17,680 creating build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,681 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,683 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,686 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,688 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,691 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,693 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,696 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,698 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,701 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,704 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,706 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,708 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,711 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-18T11:07:17,714 creating build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,715 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,718 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,719 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,721 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,723 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,725 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,728 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,731 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,734 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,736 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-18T11:07:17,739 creating build/lib/omicverse/io/bulk 2026-03-18T11:07:17,740 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-18T11:07:17,742 creating build/lib/omicverse/io/single 2026-03-18T11:07:17,743 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-18T11:07:17,746 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-18T11:07:17,748 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-18T11:07:17,751 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-18T11:07:17,753 creating build/lib/omicverse/io/general 2026-03-18T11:07:17,754 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-18T11:07:17,756 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-18T11:07:17,758 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-18T11:07:17,760 creating build/lib/omicverse/io/spatial 2026-03-18T11:07:17,761 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-18T11:07:17,764 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-18T11:07:17,767 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-18T11:07:17,769 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-18T11:07:17,771 creating build/lib/omicverse/bulk/_alignment 2026-03-18T11:07:17,772 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-18T11:07:17,775 creating build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,776 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,778 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,781 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,783 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,785 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,787 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,789 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,791 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,794 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,796 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,798 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,801 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-18T11:07:17,803 creating build/lib/omicverse/popv/hub 2026-03-18T11:07:17,804 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-18T11:07:17,806 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-18T11:07:17,808 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-18T11:07:17,811 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-18T11:07:17,812 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-18T11:07:17,815 creating build/lib/omicverse/llm/utils 2026-03-18T11:07:17,816 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-18T11:07:17,819 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-18T11:07:17,821 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-18T11:07:17,824 creating build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,824 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,826 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,828 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,830 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,832 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,834 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-18T11:07:17,837 creating build/lib/omicverse/llm/domain_research 2026-03-18T11:07:17,838 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-18T11:07:17,840 creating build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:17,841 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:17,843 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:17,846 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:17,848 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:17,851 creating build/lib/omicverse/llm/CellPLM 2026-03-18T11:07:17,852 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-18T11:07:17,854 creating build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,855 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,857 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,859 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,862 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,864 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,867 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-18T11:07:17,869 creating build/lib/omicverse/llm/dr 2026-03-18T11:07:17,870 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,872 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,874 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,876 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,878 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,880 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-18T11:07:17,883 creating build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,884 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,887 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,892 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,895 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,899 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,902 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,904 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,906 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,909 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,912 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,915 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,918 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-18T11:07:17,921 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,922 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,925 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,927 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,929 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,932 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-18T11:07:17,935 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-18T11:07:17,936 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-18T11:07:17,938 creating build/lib/omicverse/llm/domain_research/write 2026-03-18T11:07:17,939 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-18T11:07:17,942 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,943 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,945 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,947 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,949 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,951 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,953 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,955 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:17,958 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-18T11:07:17,959 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-18T11:07:17,961 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-18T11:07:17,963 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-18T11:07:17,966 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,967 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,970 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,972 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,974 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,976 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,979 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-18T11:07:17,981 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-18T11:07:17,982 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-18T11:07:17,984 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-18T11:07:17,986 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-18T11:07:17,988 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:17,989 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:17,992 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:17,995 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:17,997 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:17,999 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-18T11:07:18,002 creating build/lib/omicverse/llm/CellPLM/head 2026-03-18T11:07:18,003 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-18T11:07:18,005 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-18T11:07:18,008 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-18T11:07:18,009 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-18T11:07:18,011 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-18T11:07:18,013 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-18T11:07:18,014 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-18T11:07:18,016 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-18T11:07:18,018 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-18T11:07:18,021 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,022 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,024 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,027 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,029 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,031 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:18,034 creating build/lib/omicverse/llm/CellPLM/model 2026-03-18T11:07:18,035 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-18T11:07:18,038 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-18T11:07:18,040 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-18T11:07:18,041 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-18T11:07:18,043 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-18T11:07:18,045 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-18T11:07:18,047 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-18T11:07:18,050 creating build/lib/omicverse/llm/scgpt/utils 2026-03-18T11:07:18,051 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-18T11:07:18,053 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-18T11:07:18,056 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,057 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,059 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,061 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,063 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,065 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-18T11:07:18,067 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:18,068 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:18,071 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:18,073 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-18T11:07:18,074 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-18T11:07:18,077 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-18T11:07:18,078 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-18T11:07:18,081 creating build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,082 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,085 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,088 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,090 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,092 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,094 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-18T11:07:18,098 creating build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,099 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,101 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,103 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,104 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,106 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-18T11:07:18,108 creating build/lib/omicverse/llm/dr/verify 2026-03-18T11:07:18,109 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-18T11:07:18,112 creating build/lib/omicverse/llm/dr/retrievers 2026-03-18T11:07:18,113 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-18T11:07:18,116 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-18T11:07:18,119 creating build/lib/omicverse/llm/dr/write 2026-03-18T11:07:18,120 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-18T11:07:18,122 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-18T11:07:18,124 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-18T11:07:18,127 creating build/lib/omicverse/llm/dr/research 2026-03-18T11:07:18,128 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-18T11:07:18,130 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-18T11:07:18,131 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-18T11:07:18,133 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,134 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,137 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,139 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,141 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,144 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,147 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,149 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-18T11:07:18,151 creating build/lib/omicverse/external/scanorama 2026-03-18T11:07:18,152 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-18T11:07:18,155 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-18T11:07:18,157 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-18T11:07:18,159 creating build/lib/omicverse/external/bulk2single 2026-03-18T11:07:18,160 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-18T11:07:18,163 creating build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,164 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,166 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,168 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,170 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,173 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-18T11:07:18,176 creating build/lib/omicverse/external/PROST 2026-03-18T11:07:18,177 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,179 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,182 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,184 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,186 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,189 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,191 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-18T11:07:18,194 creating build/lib/omicverse/external/bin2cell 2026-03-18T11:07:18,195 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-18T11:07:18,199 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-18T11:07:18,201 creating build/lib/omicverse/external/mofapy2 2026-03-18T11:07:18,202 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-18T11:07:18,204 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-18T11:07:18,206 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-18T11:07:18,208 creating build/lib/omicverse/external/STT 2026-03-18T11:07:18,209 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-18T11:07:18,211 creating build/lib/omicverse/external/somde 2026-03-18T11:07:18,212 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-18T11:07:18,214 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-18T11:07:18,216 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-18T11:07:18,219 creating build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,220 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,222 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,224 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,227 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,228 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,230 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,232 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,234 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,236 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,238 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,240 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,242 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,245 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,247 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,250 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-18T11:07:18,253 creating build/lib/omicverse/external/gaston 2026-03-18T11:07:18,254 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,256 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,258 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,260 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,262 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,264 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,266 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,268 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,270 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,272 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,274 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,276 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,278 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,280 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,282 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,284 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-18T11:07:18,286 creating build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,287 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,289 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,291 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,293 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,296 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,299 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,301 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,303 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,306 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,308 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,310 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-18T11:07:18,313 creating build/lib/omicverse/external/tosica 2026-03-18T11:07:18,314 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-18T11:07:18,316 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-18T11:07:18,318 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-18T11:07:18,321 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-18T11:07:18,322 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-18T11:07:18,325 creating build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,326 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,328 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,330 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,332 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,334 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,336 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,337 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-18T11:07:18,340 creating build/lib/omicverse/external/datacollect 2026-03-18T11:07:18,341 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-18T11:07:18,344 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-18T11:07:18,346 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-18T11:07:18,349 creating build/lib/omicverse/external/palantir 2026-03-18T11:07:18,350 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,353 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,355 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,358 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,360 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,361 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,363 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,364 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,367 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,369 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,371 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-18T11:07:18,375 creating build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,376 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,378 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,380 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,382 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,384 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,387 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,389 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,391 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,394 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,396 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,398 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,400 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-18T11:07:18,403 creating build/lib/omicverse/external/flowsig 2026-03-18T11:07:18,404 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-18T11:07:18,407 creating build/lib/omicverse/external/spaceflow 2026-03-18T11:07:18,408 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-18T11:07:18,410 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-18T11:07:18,412 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-18T11:07:18,414 creating build/lib/omicverse/external/cnmf 2026-03-18T11:07:18,415 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-18T11:07:18,419 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-18T11:07:18,422 creating build/lib/omicverse/external/scSLAT 2026-03-18T11:07:18,423 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-18T11:07:18,425 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-18T11:07:18,428 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-18T11:07:18,430 creating build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,431 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,433 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,435 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,437 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,440 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,441 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,443 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-18T11:07:18,445 creating build/lib/omicverse/external/scdiffusion 2026-03-18T11:07:18,446 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-18T11:07:18,449 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-18T11:07:18,450 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-18T11:07:18,452 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-18T11:07:18,455 creating build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,456 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,459 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,461 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,464 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,466 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,469 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,471 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,473 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,475 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-18T11:07:18,479 creating build/lib/omicverse/external/spaco 2026-03-18T11:07:18,480 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,482 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,484 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,486 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,489 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,491 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,492 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,494 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,496 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-18T11:07:18,499 creating build/lib/omicverse/external/tape 2026-03-18T11:07:18,500 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,502 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,505 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,506 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,509 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,511 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-18T11:07:18,514 creating build/lib/omicverse/external/scrublet 2026-03-18T11:07:18,515 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-18T11:07:18,517 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-18T11:07:18,519 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-18T11:07:18,522 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,523 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,525 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,527 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,529 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,530 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-18T11:07:18,533 creating build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,534 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,537 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,539 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,541 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,543 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,545 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,548 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,550 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,553 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,555 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-18T11:07:18,558 creating build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,559 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,562 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,564 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,566 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,568 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,570 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,573 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,575 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,578 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-18T11:07:18,581 creating build/lib/omicverse/external/GNTD 2026-03-18T11:07:18,582 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-18T11:07:18,583 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-18T11:07:18,586 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-18T11:07:18,588 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-18T11:07:18,591 creating build/lib/omicverse/external/CAST 2026-03-18T11:07:18,591 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,594 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,596 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,599 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,601 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,603 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,606 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-18T11:07:18,608 creating build/lib/omicverse/external/cytotrace2 2026-03-18T11:07:18,609 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-18T11:07:18,612 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-18T11:07:18,613 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-18T11:07:18,615 creating build/lib/omicverse/external/commot 2026-03-18T11:07:18,616 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-18T11:07:18,619 creating build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,620 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,625 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,628 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,630 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,632 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-18T11:07:18,634 creating build/lib/omicverse/external/nocd 2026-03-18T11:07:18,635 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,637 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,639 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,641 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,643 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,645 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-18T11:07:18,648 creating build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,649 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,651 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,654 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,656 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,658 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,661 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,663 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,665 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,668 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-18T11:07:18,671 creating build/lib/omicverse/external/scMulan 2026-03-18T11:07:18,672 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-18T11:07:18,675 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-18T11:07:18,676 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-18T11:07:18,679 creating build/lib/omicverse/external/topact 2026-03-18T11:07:18,680 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,682 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,684 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,686 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,689 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,691 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,694 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,696 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-18T11:07:18,699 creating build/lib/omicverse/external/cellanova 2026-03-18T11:07:18,700 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-18T11:07:18,702 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-18T11:07:18,703 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-18T11:07:18,706 creating build/lib/omicverse/external/VIA 2026-03-18T11:07:18,707 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,713 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,720 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,722 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,724 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,730 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,733 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-18T11:07:18,736 creating build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,737 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,739 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,741 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,744 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,745 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:18,748 creating build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,749 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,752 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,754 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,756 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,758 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,760 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,762 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,764 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,766 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,768 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,770 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,772 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,774 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-18T11:07:18,777 creating build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,777 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,780 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,782 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,784 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,785 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,787 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-18T11:07:18,790 creating build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,791 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,792 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,794 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,796 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,798 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,800 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,802 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,805 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,807 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,809 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,810 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,813 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,814 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,816 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,818 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,820 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,822 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,824 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,826 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,828 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,830 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-18T11:07:18,832 creating build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,833 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,836 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,839 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,841 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,843 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,846 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,848 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,850 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-18T11:07:18,852 creating build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,853 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,855 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,857 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,860 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,861 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-18T11:07:18,863 creating build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,864 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,867 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,870 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,871 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,873 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,875 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:18,878 creating build/lib/omicverse/external/BINARY 2026-03-18T11:07:18,879 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-18T11:07:18,881 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-18T11:07:18,883 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-18T11:07:18,885 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-18T11:07:18,889 creating build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,890 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,893 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,895 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,897 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,900 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,902 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-18T11:07:18,904 creating build/lib/omicverse/external/harmony 2026-03-18T11:07:18,905 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-18T11:07:18,908 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-18T11:07:18,910 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-18T11:07:18,913 creating build/lib/omicverse/external/mpl_chord 2026-03-18T11:07:18,914 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-18T11:07:18,916 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-18T11:07:18,918 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-18T11:07:18,922 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,923 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,925 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,927 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,929 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,932 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,934 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,936 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,938 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,940 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,941 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,943 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,944 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:18,948 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,949 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,952 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,955 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,958 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,960 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,962 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,964 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,967 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,970 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,972 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:18,976 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,977 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,979 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,981 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,984 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,986 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:18,989 creating build/lib/omicverse/external/mofapy2/run 2026-03-18T11:07:18,990 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-18T11:07:18,994 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-18T11:07:18,995 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-18T11:07:18,996 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-18T11:07:18,998 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-18T11:07:19,000 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,001 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,003 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,006 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,008 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,010 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,011 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-18T11:07:19,015 creating build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,016 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,018 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,019 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,022 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,024 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-18T11:07:19,028 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,028 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,031 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,034 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,037 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,039 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,041 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,043 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,046 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,048 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,050 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,053 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,056 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,059 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,061 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,063 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,065 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,067 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,069 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:19,072 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,073 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,075 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,077 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,079 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,081 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,083 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,085 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,087 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,089 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,090 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,093 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:19,096 creating build/lib/omicverse/external/STT/tl 2026-03-18T11:07:19,097 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-18T11:07:19,099 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-18T11:07:19,100 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-18T11:07:19,102 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-18T11:07:19,105 creating build/lib/omicverse/external/STT/pl 2026-03-18T11:07:19,107 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-18T11:07:19,109 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-18T11:07:19,112 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-18T11:07:19,114 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-18T11:07:19,116 creating build/lib/omicverse/external/space/cell2location 2026-03-18T11:07:19,118 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-18T11:07:19,121 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-18T11:07:19,123 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-18T11:07:19,124 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-18T11:07:19,126 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-18T11:07:19,128 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-18T11:07:19,131 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,132 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,134 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,136 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,138 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,140 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,142 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,145 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,148 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-18T11:07:19,151 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:19,152 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:19,154 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:19,156 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:19,158 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:19,161 creating build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,162 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,165 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,167 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,170 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,171 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:19,174 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-18T11:07:19,175 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-18T11:07:19,178 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-18T11:07:19,180 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-18T11:07:19,182 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:19,183 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:19,186 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:19,188 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,189 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,191 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,193 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,194 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,197 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:19,200 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:19,201 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:19,202 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:19,205 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:19,208 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,209 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,212 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,214 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,216 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,218 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:19,220 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:19,221 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:19,224 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:19,226 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:19,229 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:19,230 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:19,232 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:19,235 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:19,239 creating build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,240 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,242 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,244 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,247 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,249 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,251 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-18T11:07:19,253 creating build/lib/omicverse/external/datacollect/config 2026-03-18T11:07:19,254 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-18T11:07:19,256 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-18T11:07:19,259 creating build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,260 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,263 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,265 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,268 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,270 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,273 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,275 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,277 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,279 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,282 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,284 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,287 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,289 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,291 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,293 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,296 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,298 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,301 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,303 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,306 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,309 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,311 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-18T11:07:19,315 creating build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,316 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,318 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,320 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,322 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,324 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,327 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,329 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,331 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,333 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,336 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,339 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,341 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,344 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,346 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,349 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,351 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,354 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,356 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,359 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,361 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,365 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,369 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,374 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,380 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,385 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,388 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,391 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,393 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,395 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,398 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,400 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,403 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,405 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,408 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-18T11:07:19,411 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,413 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,415 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,418 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,420 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,423 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,425 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,427 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:19,430 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:19,432 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:19,434 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:19,436 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:19,439 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:19,442 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,444 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,446 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,449 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,452 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,455 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,457 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,460 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,463 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,465 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:19,468 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,469 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,472 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,474 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,477 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,479 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,482 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,485 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,487 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:19,490 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,491 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,494 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,497 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,499 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,502 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,504 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-18T11:07:19,507 creating build/lib/omicverse/external/flowsig/tools 2026-03-18T11:07:19,509 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-18T11:07:19,512 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-18T11:07:19,515 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-18T11:07:19,516 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-18T11:07:19,519 creating build/lib/omicverse/external/flowsig/plotting 2026-03-18T11:07:19,520 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-18T11:07:19,522 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-18T11:07:19,525 creating build/lib/omicverse/external/flowsig/utilities 2026-03-18T11:07:19,526 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-18T11:07:19,529 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-18T11:07:19,532 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,534 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,537 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,541 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,543 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,545 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,548 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:19,551 creating build/lib/omicverse/external/single/arboreto 2026-03-18T11:07:19,553 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-18T11:07:19,555 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-18T11:07:19,557 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-18T11:07:19,560 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-18T11:07:19,564 creating build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,565 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,568 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,571 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,574 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,577 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,579 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,581 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,583 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-18T11:07:19,587 creating build/lib/omicverse/external/scSLAT/viz 2026-03-18T11:07:19,588 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-18T11:07:19,591 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-18T11:07:19,593 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-18T11:07:19,597 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:19,598 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:19,601 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:19,604 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:19,607 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:19,608 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:19,611 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:19,614 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,616 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,619 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,621 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,623 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,626 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,628 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,631 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,632 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,634 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,636 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,638 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,640 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,642 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,644 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,646 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,649 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,651 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,653 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:19,655 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-18T11:07:19,656 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-18T11:07:19,659 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-18T11:07:19,661 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-18T11:07:19,663 creating build/lib/omicverse/external/spaco/external 2026-03-18T11:07:19,664 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-18T11:07:19,666 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-18T11:07:19,669 creating build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:19,670 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:19,672 creating build/lib/omicverse/external/CAST/model 2026-03-18T11:07:19,673 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-18T11:07:19,675 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-18T11:07:19,677 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-18T11:07:19,680 creating build/lib/omicverse/external/commot/tools 2026-03-18T11:07:19,681 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-18T11:07:19,684 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-18T11:07:19,686 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-18T11:07:19,690 creating build/lib/omicverse/external/commot/plotting 2026-03-18T11:07:19,691 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-18T11:07:19,694 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-18T11:07:19,696 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-18T11:07:19,699 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,700 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,702 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,705 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,706 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,709 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:19,712 creating build/lib/omicverse/external/commot/preprocessing 2026-03-18T11:07:19,713 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-18T11:07:19,715 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-18T11:07:19,717 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-18T11:07:19,720 creating build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,721 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,724 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,726 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,727 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,730 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-18T11:07:19,733 creating build/lib/omicverse/external/nocd/metrics 2026-03-18T11:07:19,734 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-18T11:07:19,736 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-18T11:07:19,738 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-18T11:07:19,741 creating build/lib/omicverse/external/nocd/nn 2026-03-18T11:07:19,742 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-18T11:07:19,744 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-18T11:07:19,746 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-18T11:07:19,748 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-18T11:07:19,750 creating build/lib/omicverse/external/scMulan/utils 2026-03-18T11:07:19,751 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-18T11:07:19,753 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-18T11:07:19,756 creating build/lib/omicverse/external/scMulan/model 2026-03-18T11:07:19,757 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-18T11:07:19,759 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-18T11:07:19,762 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:19,763 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:19,766 creating build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,767 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,770 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,772 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,775 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,777 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-18T11:07:19,779 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-18T11:07:19,780 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-18T11:07:19,784 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-18T11:07:19,788 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-18T11:07:19,793 creating build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,795 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,800 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,809 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,815 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,822 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,824 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,826 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,829 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-18T11:07:19,833 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-18T11:07:19,834 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-18T11:07:19,836 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-18T11:07:19,839 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-18T11:07:19,841 creating build/lib/omicverse/single/templates 2026-03-18T11:07:19,842 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-18T11:07:19,844 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-18T11:07:19,848 creating build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,849 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,851 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,853 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,855 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,857 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-18T11:07:19,860 creating build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,860 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,864 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,867 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,869 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,871 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-18T11:07:19,875 creating build/lib/omicverse/jarvis/gateway 2026-03-18T11:07:19,876 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-18T11:07:19,878 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-18T11:07:19,881 creating build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,881 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,884 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,887 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,888 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,890 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,892 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,894 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-18T11:07:19,896 creating build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,897 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,899 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,901 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,903 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,905 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,907 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,909 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,910 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-18T11:07:19,913 creating build/lib/omicverse/pp/experimental 2026-03-18T11:07:19,914 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-18T11:07:19,916 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-18T11:07:19,918 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-18T11:07:19,922 running egg_info 2026-03-18T11:07:19,933 writing omicverse.egg-info/PKG-INFO 2026-03-18T11:07:19,950 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-18T11:07:19,952 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-18T11:07:19,960 writing requirements to omicverse.egg-info/requires.txt 2026-03-18T11:07:19,962 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-18T11:07:20,142 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:20,202 reading manifest template 'MANIFEST.in' 2026-03-18T11:07:22,624 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-18T11:07:24,085 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-18T11:07:24,519 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-18T11:07:28,883 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-18T11:07:29,952 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-18T11:07:30,391 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-18T11:07:30,811 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-18T11:07:31,249 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-18T11:07:31,716 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-18T11:07:32,158 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-18T11:07:32,161 no previously-included directories found matching '.git' 2026-03-18T11:07:32,164 no previously-included directories found matching '.github' 2026-03-18T11:07:32,166 no previously-included directories found matching '.claude' 2026-03-18T11:07:32,169 no previously-included directories found matching '.pytest_cache' 2026-03-18T11:07:32,172 no previously-included directories found matching '.ruff_cache' 2026-03-18T11:07:32,175 no previously-included directories found matching '.vscode' 2026-03-18T11:07:32,178 no previously-included directories found matching 'docs' 2026-03-18T11:07:32,181 no previously-included directories found matching 'tests' 2026-03-18T11:07:32,184 no previously-included directories found matching 'OvIntelligence' 2026-03-18T11:07:32,188 no previously-included directories found matching 'READMEM' 2026-03-18T11:07:32,193 no previously-included directories found matching 'omicverse_guide' 2026-03-18T11:07:32,198 no previously-included directories found matching 'omicverse_web' 2026-03-18T11:07:32,202 no previously-included directories found matching 'tmp' 2026-03-18T11:07:32,206 no previously-included directories found matching 'tmp_omicverse' 2026-03-18T11:07:32,210 no previously-included directories found matching 'Skill_Seekers' 2026-03-18T11:07:32,218 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-18T11:07:32,229 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-18T11:07:32,237 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-18T11:07:32,238 adding license file 'LICENSE' 2026-03-18T11:07:32,322 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-18T11:07:32,420 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-18T11:07:32,423 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-18T11:07:32,425 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-18T11:07:32,430 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-18T11:07:32,433 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-18T11:07:32,505 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-18T11:07:32,508 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-18T11:07:32,510 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-18T11:07:32,513 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-18T11:07:32,515 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-18T11:07:32,518 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-18T11:07:32,520 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:32,526 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:32,529 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:32,532 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-18T11:07:32,534 creating build/lib/omicverse/llm/scfoundation/models 2026-03-18T11:07:32,535 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-18T11:07:32,538 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:32,611 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:32,648 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-18T11:07:32,650 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-18T11:07:32,653 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-18T11:07:32,655 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-18T11:07:32,657 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:32,663 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:32,664 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:32,754 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:32,760 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:32,766 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:32,767 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:32,774 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:32,790 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:32,799 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:32,800 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:32,819 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:32,837 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:32,856 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-18T11:07:32,858 creating build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,859 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,862 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,864 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,867 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,870 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,873 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,875 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,878 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,882 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,884 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,887 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,890 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-18T11:07:32,893 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:32,895 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:32,898 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:32,901 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-18T11:07:32,904 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:32,906 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:32,910 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:32,913 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:32,914 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:32,918 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:32,922 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:32,927 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:34,411 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:34,442 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-18T11:07:34,445 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-18T11:07:34,448 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-18T11:07:34,450 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-18T11:07:34,453 creating build/lib/omicverse/single/templates/img 2026-03-18T11:07:34,454 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-18T11:07:34,456 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-18T11:07:34,459 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-18T11:07:34,463 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-18T11:07:34,466 creating build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,467 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,470 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,472 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,483 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,498 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-18T11:07:34,616 installing to build/bdist.linux-armv7l/wheel 2026-03-18T11:07:34,616 running install 2026-03-18T11:07:34,639 running install_lib 2026-03-18T11:07:34,645 creating build/bdist.linux-armv7l/wheel 2026-03-18T11:07:34,647 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-18T11:07:34,649 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-18T11:07:34,650 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,653 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,655 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,658 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,661 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,664 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,666 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,668 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,670 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,672 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-18T11:07:34,676 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-18T11:07:34,677 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,681 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-18T11:07:34,682 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,685 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,687 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,689 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,692 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,694 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,697 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-18T11:07:34,699 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,703 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,706 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-18T11:07:34,707 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,710 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,712 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,715 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,718 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,720 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,722 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,725 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,728 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,730 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-18T11:07:34,734 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-18T11:07:34,735 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,738 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,741 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,745 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,749 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,752 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,755 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,757 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,760 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,763 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,766 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,768 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,772 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-18T11:07:34,774 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,778 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,780 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,785 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,787 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,790 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,793 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,795 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,798 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,800 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,803 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,806 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,809 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,811 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,813 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,819 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,822 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-18T11:07:34,823 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,826 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,827 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,830 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,832 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,834 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,838 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,841 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,845 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,847 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-18T11:07:34,849 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,853 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,855 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,857 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,859 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,862 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,864 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,867 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,870 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,872 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,874 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,876 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,878 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,881 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,883 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-18T11:07:34,886 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:34,890 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-18T11:07:34,892 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-18T11:07:34,893 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-18T11:07:34,895 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-18T11:07:34,896 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-18T11:07:34,899 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-18T11:07:34,901 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-18T11:07:34,903 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-18T11:07:34,905 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-18T11:07:34,907 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-18T11:07:34,908 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-18T11:07:34,910 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-18T11:07:34,912 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-18T11:07:34,915 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-18T11:07:34,916 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-18T11:07:34,918 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-18T11:07:34,921 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-18T11:07:34,923 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-18T11:07:34,926 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-18T11:07:34,927 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,929 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,932 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,934 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,937 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,940 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,942 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,945 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,947 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,949 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,951 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,954 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,958 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,960 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-18T11:07:34,963 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-18T11:07:34,964 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-18T11:07:34,966 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-18T11:07:34,970 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-18T11:07:34,972 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-18T11:07:34,973 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-18T11:07:34,976 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-18T11:07:34,977 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,979 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,982 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,984 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,986 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,989 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,991 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,993 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:34,996 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:35,013 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:35,015 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-18T11:07:35,018 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-18T11:07:35,019 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-18T11:07:35,021 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-18T11:07:35,023 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-18T11:07:35,024 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,026 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,029 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,031 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,033 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,035 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,037 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,039 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,041 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,043 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,045 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,047 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-18T11:07:35,049 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,052 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,054 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,056 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,058 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,061 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-18T11:07:35,062 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-18T11:07:35,064 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-18T11:07:35,066 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-18T11:07:35,068 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-18T11:07:35,070 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-18T11:07:35,072 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-18T11:07:35,075 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:35,078 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-18T11:07:35,079 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,083 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,087 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-18T11:07:35,088 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-18T11:07:35,090 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-18T11:07:35,092 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-18T11:07:35,095 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,099 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,101 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,105 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,111 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-18T11:07:35,112 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,114 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,116 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,119 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,121 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,123 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-18T11:07:35,125 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,127 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,129 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,131 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,134 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,136 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-18T11:07:35,138 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,140 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,142 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,145 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-18T11:07:35,146 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-18T11:07:35,149 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-18T11:07:35,150 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-18T11:07:35,152 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-18T11:07:35,153 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-18T11:07:35,156 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,158 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-18T11:07:35,159 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,161 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,164 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,167 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-18T11:07:35,168 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-18T11:07:35,170 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,173 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,174 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,176 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,178 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,180 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,183 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,185 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,186 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-18T11:07:35,188 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,190 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,192 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,198 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-18T11:07:35,201 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-18T11:07:35,202 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-18T11:07:35,204 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-18T11:07:35,206 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-18T11:07:35,208 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-18T11:07:35,211 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,212 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,215 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,217 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,219 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,222 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,225 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-18T11:07:35,229 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-18T11:07:35,230 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-18T11:07:35,233 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-18T11:07:35,235 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-18T11:07:35,238 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,240 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,243 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,246 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,250 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,253 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-18T11:07:35,257 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-18T11:07:35,258 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-18T11:07:35,261 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-18T11:07:35,264 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-18T11:07:35,266 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-18T11:07:35,269 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-18T11:07:35,271 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-18T11:07:35,274 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-18T11:07:35,275 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-18T11:07:35,278 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-18T11:07:35,280 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-18T11:07:35,283 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,285 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,288 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,292 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,295 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,297 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-18T11:07:35,301 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-18T11:07:35,302 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-18T11:07:35,305 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-18T11:07:35,308 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-18T11:07:35,310 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-18T11:07:35,312 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-18T11:07:35,315 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-18T11:07:35,317 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-18T11:07:35,320 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,323 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-18T11:07:35,325 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-18T11:07:35,327 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-18T11:07:35,330 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-18T11:07:35,332 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,334 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,337 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,340 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,343 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,344 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,347 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,349 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,353 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,355 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-18T11:07:35,358 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:35,361 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:35,396 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:35,399 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:35,417 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-18T11:07:35,440 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,443 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-18T11:07:35,446 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-18T11:07:35,448 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-18T11:07:35,450 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-18T11:07:35,453 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-18T11:07:35,456 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-18T11:07:35,457 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,460 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,464 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,466 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,468 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,470 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-18T11:07:35,474 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-18T11:07:35,476 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-18T11:07:35,478 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-18T11:07:35,480 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-18T11:07:35,482 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-18T11:07:35,484 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-18T11:07:35,486 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-18T11:07:35,488 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,490 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,492 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,495 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,497 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-18T11:07:35,499 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-18T11:07:35,502 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-18T11:07:35,503 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-18T11:07:35,507 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-18T11:07:35,509 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,513 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-18T11:07:35,514 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-18T11:07:35,517 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-18T11:07:35,519 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-18T11:07:35,522 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-18T11:07:35,524 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-18T11:07:35,526 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-18T11:07:35,528 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-18T11:07:35,530 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-18T11:07:35,533 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-18T11:07:35,536 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,537 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,540 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,543 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,545 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,547 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,550 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,553 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-18T11:07:35,555 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,558 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,562 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,565 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,568 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,571 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,574 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,576 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,579 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,583 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,587 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,590 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-18T11:07:35,593 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-18T11:07:35,598 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-18T11:07:35,600 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-18T11:07:35,602 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-18T11:07:35,605 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-18T11:07:35,608 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-18T11:07:35,610 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-18T11:07:35,612 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,614 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,616 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,619 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,621 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,624 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,627 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,629 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,631 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,632 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,634 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,636 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:35,637 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:35,643 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:35,647 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-18T11:07:35,744 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,746 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-18T11:07:35,749 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,750 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,753 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,756 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,759 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,761 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,763 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,766 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,769 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,771 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,773 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,776 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-18T11:07:35,782 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-18T11:07:35,784 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,785 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,787 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,790 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,792 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,794 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-18T11:07:35,797 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-18T11:07:35,798 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-18T11:07:35,800 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-18T11:07:35,803 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-18T11:07:35,805 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-18T11:07:35,807 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-18T11:07:35,810 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-18T11:07:35,811 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,814 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,816 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,819 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,821 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,823 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,826 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-18T11:07:35,828 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-18T11:07:35,829 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-18T11:07:35,834 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-18T11:07:35,836 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-18T11:07:35,838 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-18T11:07:35,840 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:35,841 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:35,849 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:35,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:35,858 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:35,879 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:35,896 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-18T11:07:35,913 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-18T11:07:35,920 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-18T11:07:35,923 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-18T11:07:35,925 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-18T11:07:35,926 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-18T11:07:35,929 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-18T11:07:35,931 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,932 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,934 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,936 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,938 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,941 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,942 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-18T11:07:35,945 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-18T11:07:35,947 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-18T11:07:35,949 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-18T11:07:35,951 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-18T11:07:35,952 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-18T11:07:35,954 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-18T11:07:35,956 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-18T11:07:35,959 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-18T11:07:35,962 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,963 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,966 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,969 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,971 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,974 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,976 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,978 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,981 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,983 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,985 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,988 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,990 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,992 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,994 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,997 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:35,999 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:36,001 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:36,003 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-18T11:07:36,005 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-18T11:07:36,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,009 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,012 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,014 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,016 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,018 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,020 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,022 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,024 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,026 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,028 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,031 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-18T11:07:36,034 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-18T11:07:36,035 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-18T11:07:36,037 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-18T11:07:36,039 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-18T11:07:36,041 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-18T11:07:36,043 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-18T11:07:36,045 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-18T11:07:36,048 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-18T11:07:36,049 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-18T11:07:36,052 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-18T11:07:36,054 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-18T11:07:36,056 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-18T11:07:36,059 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-18T11:07:36,061 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-18T11:07:36,063 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-18T11:07:36,064 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-18T11:07:36,067 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-18T11:07:36,068 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-18T11:07:36,071 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,073 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,075 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,078 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,080 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,082 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,084 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,086 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,088 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-18T11:07:36,091 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:36,092 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:36,095 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:36,097 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:36,099 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-18T11:07:36,102 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-18T11:07:36,105 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-18T11:07:36,107 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:36,108 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:36,110 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:36,112 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-18T11:07:36,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,117 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,120 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,123 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,125 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,127 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-18T11:07:36,129 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,132 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:36,133 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:36,136 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:36,138 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-18T11:07:36,140 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,142 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,145 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:36,147 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:36,148 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:36,151 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-18T11:07:36,153 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,155 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,157 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-18T11:07:36,160 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-18T11:07:36,162 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-18T11:07:36,164 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-18T11:07:36,166 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-18T11:07:36,168 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-18T11:07:36,171 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:36,172 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:36,175 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-18T11:07:36,177 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,178 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,180 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,182 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,184 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,186 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-18T11:07:36,190 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-18T11:07:36,191 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-18T11:07:36,193 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-18T11:07:36,195 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-18T11:07:36,198 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-18T11:07:36,199 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,202 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,204 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,206 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,208 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,211 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,213 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,214 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,217 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,218 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,221 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,223 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,226 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,228 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,231 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-18T11:07:36,234 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-18T11:07:36,235 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,238 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,240 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,242 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,244 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,246 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,248 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,250 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,252 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,254 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,256 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,258 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,260 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,262 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,264 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,266 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-18T11:07:36,269 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-18T11:07:36,270 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,273 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,275 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,277 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,280 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,282 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,285 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,287 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,289 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,291 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,293 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-18T11:07:36,296 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-18T11:07:36,297 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-18T11:07:36,299 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-18T11:07:36,302 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-18T11:07:36,305 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-18T11:07:36,307 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-18T11:07:36,310 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-18T11:07:36,311 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,313 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,315 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,317 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,319 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,321 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,323 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-18T11:07:36,326 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-18T11:07:36,327 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-18T11:07:36,329 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,331 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,334 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,337 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,339 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,341 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-18T11:07:36,344 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-18T11:07:36,345 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-18T11:07:36,347 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-18T11:07:36,349 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-18T11:07:36,351 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-18T11:07:36,354 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-18T11:07:36,356 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-18T11:07:36,359 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-18T11:07:36,362 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-18T11:07:36,363 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,365 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,367 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,370 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,372 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,375 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,378 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,380 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,382 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,385 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,387 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,390 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-18T11:07:36,393 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-18T11:07:36,394 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,397 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,399 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,402 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,405 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,407 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,410 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,412 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,414 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,417 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,419 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,422 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,424 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,426 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,428 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,430 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,433 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,435 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,438 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,440 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,442 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,444 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-18T11:07:36,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-18T11:07:36,448 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,451 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,453 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,455 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,458 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,460 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,463 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,465 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,467 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,470 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,471 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,473 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,475 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,477 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,479 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,481 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,483 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-18T11:07:36,485 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,488 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,490 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,492 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,495 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,497 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,499 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,502 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,504 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,507 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-18T11:07:36,508 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-18T11:07:36,510 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-18T11:07:36,512 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-18T11:07:36,514 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-18T11:07:36,517 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,519 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,521 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,524 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,526 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,528 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,530 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,533 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,535 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,537 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,539 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,542 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,543 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,546 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,548 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,551 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,553 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,556 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,558 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,560 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,562 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-18T11:07:36,565 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,567 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,569 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,572 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,573 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,576 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,578 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,580 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,583 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,585 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,587 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,589 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-18T11:07:36,592 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,593 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,595 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,597 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,599 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,602 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,604 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-18T11:07:36,606 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,609 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-18T11:07:36,611 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-18T11:07:36,612 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,615 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,618 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,620 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,622 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,624 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,626 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,628 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,630 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,632 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,635 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-18T11:07:36,639 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-18T11:07:36,640 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,642 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,643 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,646 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,648 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,651 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,653 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,655 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,657 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,659 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,661 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,663 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-18T11:07:36,666 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-18T11:07:36,667 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-18T11:07:36,669 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-18T11:07:36,671 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-18T11:07:36,674 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-18T11:07:36,675 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-18T11:07:36,678 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-18T11:07:36,679 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-18T11:07:36,681 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-18T11:07:36,684 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-18T11:07:36,685 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-18T11:07:36,687 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-18T11:07:36,689 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-18T11:07:36,691 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,692 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,695 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,698 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,699 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,702 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,704 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-18T11:07:36,707 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-18T11:07:36,708 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-18T11:07:36,710 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-18T11:07:36,712 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-18T11:07:36,714 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-18T11:07:36,716 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-18T11:07:36,719 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-18T11:07:36,722 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-18T11:07:36,724 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-18T11:07:36,725 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-18T11:07:36,727 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-18T11:07:36,728 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-18T11:07:36,731 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-18T11:07:36,734 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-18T11:07:36,735 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-18T11:07:36,738 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-18T11:07:36,740 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-18T11:07:36,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-18T11:07:36,744 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,746 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,749 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,752 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:36,753 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:36,756 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:36,759 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-18T11:07:36,762 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:36,763 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:36,765 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-18T11:07:36,767 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,770 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,772 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,774 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,776 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-18T11:07:36,779 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-18T11:07:36,780 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-18T11:07:36,782 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-18T11:07:36,784 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-18T11:07:36,788 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-18T11:07:36,789 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,792 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,794 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,797 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,799 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,801 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,804 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-18T11:07:36,806 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-18T11:07:36,807 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-18T11:07:36,811 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,812 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,815 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,817 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,819 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,822 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,824 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,827 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,829 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,831 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,834 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,837 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,840 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,842 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,845 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,848 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,852 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,855 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,858 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-18T11:07:36,860 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-18T11:07:36,863 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-18T11:07:36,865 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-18T11:07:36,868 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-18T11:07:36,871 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-18T11:07:36,873 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-18T11:07:36,875 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-18T11:07:36,879 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-18T11:07:36,881 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,884 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,887 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,891 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,894 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,898 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,901 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,903 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,906 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-18T11:07:36,911 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-18T11:07:36,912 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,915 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,917 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,920 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,924 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-18T11:07:36,925 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-18T11:07:36,928 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-18T11:07:36,930 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,932 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,934 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,936 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,938 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-18T11:07:36,941 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-18T11:07:36,942 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,944 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,946 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,948 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,951 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,953 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-18T11:07:36,955 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-18T11:07:36,956 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-18T11:07:36,958 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-18T11:07:36,961 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-18T11:07:36,964 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,964 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,967 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,968 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,970 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,972 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-18T11:07:36,975 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-18T11:07:36,976 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,978 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,981 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,983 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,985 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,987 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,989 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,991 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,994 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,996 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-18T11:07:36,999 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-18T11:07:37,000 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,003 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,005 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,008 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,010 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-18T11:07:37,014 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-18T11:07:37,017 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-18T11:07:37,019 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-18T11:07:37,021 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-18T11:07:37,023 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-18T11:07:37,025 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,028 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,030 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,032 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-18T11:07:37,035 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-18T11:07:37,036 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-18T11:07:37,038 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-18T11:07:37,041 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-18T11:07:37,043 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-18T11:07:37,046 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-18T11:07:37,047 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,049 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,052 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,054 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,057 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,059 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-18T11:07:37,060 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-18T11:07:37,062 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-18T11:07:37,064 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-18T11:07:37,066 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,069 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-18T11:07:37,072 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-18T11:07:37,073 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-18T11:07:37,076 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-18T11:07:37,078 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-18T11:07:37,080 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-18T11:07:37,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-18T11:07:37,083 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-18T11:07:37,086 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-18T11:07:37,088 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-18T11:07:37,091 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-18T11:07:37,093 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-18T11:07:37,096 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-18T11:07:37,098 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-18T11:07:37,101 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,103 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,105 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,108 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,110 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,113 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-18T11:07:37,116 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-18T11:07:37,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-18T11:07:37,121 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-18T11:07:37,123 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-18T11:07:37,125 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:37,126 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:37,130 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:37,134 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-18T11:07:37,140 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:37,142 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:37,146 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-18T11:07:37,151 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-18T11:07:37,153 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-18T11:07:37,156 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-18T11:07:37,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-18T11:07:37,160 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-18T11:07:37,163 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-18T11:07:37,165 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-18T11:07:37,168 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-18T11:07:37,171 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-18T11:07:37,173 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-18T11:07:37,175 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-18T11:07:37,185 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-18T11:07:37,188 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-18T11:07:37,190 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-18T11:07:37,192 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-18T11:07:37,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-18T11:07:37,196 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,198 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,200 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-18T11:07:37,201 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-18T11:07:37,203 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-18T11:07:37,205 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-18T11:07:37,207 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,210 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,212 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,215 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-18T11:07:37,216 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-18T11:07:37,218 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-18T11:07:37,220 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-18T11:07:37,222 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-18T11:07:37,223 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-18T11:07:37,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-18T11:07:37,227 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,230 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,232 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,234 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,237 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,239 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,241 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,244 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,247 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-18T11:07:37,250 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-18T11:07:37,253 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-18T11:07:37,254 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-18T11:07:37,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-18T11:07:37,258 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-18T11:07:37,261 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-18T11:07:37,263 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-18T11:07:37,265 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:37,276 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:37,720 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:37,747 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-18T11:07:37,750 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-18T11:07:37,752 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-18T11:07:37,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-18T11:07:37,756 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-18T11:07:37,759 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-18T11:07:37,763 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-18T11:07:37,765 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,768 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,770 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,774 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,779 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,781 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,784 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,787 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-18T11:07:37,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-18T11:07:37,791 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-18T11:07:37,794 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-18T11:07:37,797 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-18T11:07:37,800 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-18T11:07:37,802 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,808 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,814 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,816 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,818 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,824 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,828 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-18T11:07:37,831 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-18T11:07:37,832 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,835 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,838 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,840 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,842 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,844 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-18T11:07:37,847 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-18T11:07:37,848 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,850 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,853 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,855 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,857 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,859 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,861 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,863 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,865 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,867 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,870 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,871 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,873 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-18T11:07:37,876 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-18T11:07:37,877 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,880 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,882 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,884 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,886 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,888 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-18T11:07:37,891 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-18T11:07:37,892 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,894 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,897 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-18T11:07:37,898 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-18T11:07:37,900 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-18T11:07:37,901 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-18T11:07:37,903 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-18T11:07:37,905 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-18T11:07:37,907 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,909 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,911 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,913 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-18T11:07:37,917 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-18T11:07:37,919 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-18T11:07:37,921 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-18T11:07:37,923 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,926 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,928 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,930 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-18T11:07:37,931 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,933 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,936 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,939 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,941 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,943 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,945 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,948 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-18T11:07:37,951 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,953 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,955 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,957 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,959 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,962 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,964 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,965 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,968 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-18T11:07:37,969 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-18T11:07:37,971 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-18T11:07:37,973 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-18T11:07:37,975 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,977 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,979 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,981 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-18T11:07:37,983 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-18T11:07:37,984 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,987 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,990 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,993 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,995 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,998 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:37,999 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:38,002 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-18T11:07:38,005 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-18T11:07:38,006 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-18T11:07:38,008 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-18T11:07:38,010 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-18T11:07:38,013 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-18T11:07:38,015 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-18T11:07:38,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-18T11:07:38,019 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,022 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,024 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,026 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,027 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,030 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,032 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-18T11:07:38,034 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-18T11:07:38,035 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-18T11:07:38,038 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-18T11:07:38,040 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-18T11:07:38,042 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-18T11:07:38,044 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-18T11:07:38,045 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,048 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,050 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,052 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,055 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,058 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-18T11:07:38,060 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-18T11:07:38,061 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-18T11:07:38,064 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-18T11:07:38,067 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-18T11:07:38,069 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-18T11:07:38,070 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-18T11:07:38,072 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-18T11:07:38,074 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-18T11:07:38,078 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-18T11:07:38,079 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,082 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,084 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,087 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,090 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,093 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,096 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,099 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,105 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,108 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,112 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,120 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,123 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,126 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,128 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,132 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-18T11:07:38,133 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,135 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,138 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,140 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,143 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-18T11:07:38,144 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-18T11:07:38,146 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-18T11:07:38,149 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-18T11:07:38,152 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-18T11:07:38,156 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,158 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-18T11:07:38,160 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,162 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,164 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,167 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,170 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,173 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,177 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,179 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,181 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,184 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,186 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,189 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,191 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,194 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,196 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,200 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,202 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,205 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,208 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,211 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,213 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,217 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,220 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,223 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,225 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,229 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,234 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,237 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,239 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,241 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-18T11:07:38,244 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:38,246 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:38,249 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:38,253 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-18T11:07:38,254 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-18T11:07:38,325 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-18T11:07:38,330 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-18T11:07:38,334 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-18T11:07:38,335 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-18T11:07:38,338 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-18T11:07:38,341 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-18T11:07:38,355 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-18T11:07:38,367 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-18T11:07:38,377 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-18T11:07:38,379 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-18T11:07:38,382 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-18T11:07:38,383 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,386 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,388 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,390 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,393 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,395 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,397 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,400 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,402 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,406 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,408 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,411 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-18T11:07:38,412 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-18T11:07:38,415 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-18T11:07:38,417 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-18T11:07:38,420 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-18T11:07:38,422 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-18T11:07:38,424 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,426 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-18T11:07:38,429 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:38,430 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-18T11:07:38,434 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-18T11:07:38,435 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-18T11:07:38,437 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-18T11:07:38,440 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-18T11:07:38,443 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-18T11:07:38,444 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,447 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,450 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,452 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-18T11:07:38,453 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-18T11:07:38,457 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-18T11:07:38,459 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-18T11:07:38,461 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-18T11:07:38,463 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-18T11:07:38,466 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,469 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,471 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,474 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-18T11:07:38,475 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-18T11:07:38,477 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-18T11:07:38,479 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,481 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,483 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,485 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,488 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,489 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,491 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,494 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-18T11:07:38,495 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,497 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,500 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,502 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,503 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,505 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,507 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-18T11:07:38,509 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-18T11:07:38,512 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-18T11:07:38,513 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,515 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,517 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,520 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,521 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,523 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,525 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,527 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,529 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,531 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-18T11:07:38,533 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-18T11:07:38,534 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-18T11:07:38,537 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-18T11:07:38,539 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-18T11:07:38,542 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-18T11:07:38,544 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-18T11:07:38,547 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-18T11:07:38,548 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,551 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,553 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,555 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,557 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,559 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,561 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,564 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-18T11:07:38,567 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-18T11:07:38,568 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,571 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,574 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,576 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,578 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,580 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,583 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,585 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,587 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-18T11:07:38,590 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-18T11:07:38,591 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,593 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,596 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,599 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,601 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,604 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,606 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,608 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,611 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,613 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,616 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,618 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,620 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,623 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,625 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,627 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,630 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,633 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,636 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,639 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,642 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-18T11:07:38,643 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-18T11:07:38,645 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-18T11:07:38,647 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-18T11:07:38,649 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,651 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,653 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-18T11:07:38,657 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-18T11:07:38,658 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,661 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,664 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,667 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,670 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,673 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,676 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,681 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,683 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,686 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,691 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,694 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,696 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,698 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,704 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,707 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,709 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,712 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,714 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,716 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-18T11:07:38,719 running install_egg_info 2026-03-18T11:07:38,725 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.0-py3.11.egg-info 2026-03-18T11:07:38,739 running install_scripts 2026-03-18T11:07:38,752 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.0.dist-info/WHEEL 2026-03-18T11:07:38,755 creating '/tmp/pip-wheel-jp504sgq/.tmp-p8n80k54/omicverse-2.0.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-18T11:07:38,758 adding 'omicverse/__init__.py' 2026-03-18T11:07:38,760 adding 'omicverse/_lazy_loader.py' 2026-03-18T11:07:38,762 adding 'omicverse/_monitor.py' 2026-03-18T11:07:38,768 adding 'omicverse/_registry.py' 2026-03-18T11:07:38,774 adding 'omicverse/_settings.py' 2026-03-18T11:07:38,777 adding 'omicverse/claw.py' 2026-03-18T11:07:38,779 adding 'omicverse/cli.py' 2026-03-18T11:07:38,781 adding 'omicverse/agent/__init__.py' 2026-03-18T11:07:38,784 adding 'omicverse/alignment/STAR.py' 2026-03-18T11:07:38,785 adding 'omicverse/alignment/__init__.py' 2026-03-18T11:07:38,787 adding 'omicverse/alignment/_cli_utils.py' 2026-03-18T11:07:38,789 adding 'omicverse/alignment/fastp.py' 2026-03-18T11:07:38,792 adding 'omicverse/alignment/featureCount.py' 2026-03-18T11:07:38,794 adding 'omicverse/alignment/fq_dump.py' 2026-03-18T11:07:38,798 adding 'omicverse/alignment/kb_api.py' 2026-03-18T11:07:38,800 adding 'omicverse/alignment/pipeline.py' 2026-03-18T11:07:38,801 adding 'omicverse/alignment/prefetch.py' 2026-03-18T11:07:38,804 adding 'omicverse/biocontext/__init__.py' 2026-03-18T11:07:38,805 adding 'omicverse/biocontext/_client.py' 2026-03-18T11:07:38,808 adding 'omicverse/biocontext/_tools.py' 2026-03-18T11:07:38,813 adding 'omicverse/bulk/_Deseq2.py' 2026-03-18T11:07:38,816 adding 'omicverse/bulk/_Enrichment.py' 2026-03-18T11:07:38,820 adding 'omicverse/bulk/_Gene_module.py' 2026-03-18T11:07:38,821 adding 'omicverse/bulk/__init__.py' 2026-03-18T11:07:38,863 adding 'omicverse/bulk/_chm13.py' 2026-03-18T11:07:38,868 adding 'omicverse/bulk/_combat.py' 2026-03-18T11:07:38,870 adding 'omicverse/bulk/_decov.py' 2026-03-18T11:07:38,871 adding 'omicverse/bulk/_df_apply.py' 2026-03-18T11:07:38,876 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-18T11:07:38,878 adding 'omicverse/bulk/_network.py' 2026-03-18T11:07:38,880 adding 'omicverse/bulk/_tcga.py' 2026-03-18T11:07:38,881 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-18T11:07:38,883 adding 'omicverse/bulk2single/__init__.py' 2026-03-18T11:07:38,887 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-18T11:07:38,888 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-18T11:07:38,891 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-18T11:07:38,895 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-18T11:07:38,900 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-18T11:07:38,902 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-18T11:07:38,905 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-18T11:07:38,907 adding 'omicverse/bulk2single/_utils.py' 2026-03-18T11:07:38,909 adding 'omicverse/bulk2single/_vae.py' 2026-03-18T11:07:38,911 adding 'omicverse/data_files/README.md' 2026-03-18T11:07:38,951 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-18T11:07:38,954 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-18T11:07:39,470 adding 'omicverse/data_files/mart_export.txt' 2026-03-18T11:07:39,502 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-18T11:07:39,506 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-18T11:07:39,508 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-18T11:07:39,532 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-18T11:07:39,574 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-18T11:07:39,615 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-18T11:07:39,621 adding 'omicverse/datasets/__init__.py' 2026-03-18T11:07:39,627 adding 'omicverse/datasets/_datasets.py' 2026-03-18T11:07:39,629 adding 'omicverse/datasets/_signatures.py' 2026-03-18T11:07:39,632 adding 'omicverse/external/__init__.py' 2026-03-18T11:07:39,634 adding 'omicverse/external/BINARY/Model.py' 2026-03-18T11:07:39,635 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-18T11:07:39,636 adding 'omicverse/external/BINARY/__init__.py' 2026-03-18T11:07:39,639 adding 'omicverse/external/BINARY/utils.py' 2026-03-18T11:07:39,641 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-18T11:07:39,644 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-18T11:07:39,648 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-18T11:07:39,649 adding 'omicverse/external/CAST/__init__.py' 2026-03-18T11:07:39,652 adding 'omicverse/external/CAST/main.py' 2026-03-18T11:07:39,655 adding 'omicverse/external/CAST/utils.py' 2026-03-18T11:07:39,656 adding 'omicverse/external/CAST/visualize.py' 2026-03-18T11:07:39,658 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-18T11:07:39,660 adding 'omicverse/external/CAST/model/aug.py' 2026-03-18T11:07:39,661 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-18T11:07:39,663 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-18T11:07:39,665 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-18T11:07:39,667 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-18T11:07:39,669 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-18T11:07:39,672 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-18T11:07:39,675 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-18T11:07:39,677 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-18T11:07:39,679 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-18T11:07:39,681 adding 'omicverse/external/CEFCON/utils.py' 2026-03-18T11:07:39,683 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-18T11:07:39,686 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-18T11:07:39,688 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-18T11:07:39,690 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-18T11:07:39,693 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-18T11:07:39,695 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-18T11:07:39,696 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-18T11:07:39,698 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-18T11:07:39,700 adding 'omicverse/external/GNTD/_utils.py' 2026-03-18T11:07:39,702 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-18T11:07:39,704 adding 'omicverse/external/GraphST/__init__.py' 2026-03-18T11:07:39,705 adding 'omicverse/external/GraphST/model.py' 2026-03-18T11:07:39,707 adding 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