2026-03-18T21:16:57,378 Created temporary directory: /tmp/pip-ephem-wheel-cache-xzrfj640 2026-03-18T21:16:57,380 Created temporary directory: /tmp/pip-build-tracker-i6zymt62 2026-03-18T21:16:57,380 Initialized build tracking at /tmp/pip-build-tracker-i6zymt62 2026-03-18T21:16:57,381 Created build tracker: /tmp/pip-build-tracker-i6zymt62 2026-03-18T21:16:57,381 Entered build tracker: /tmp/pip-build-tracker-i6zymt62 2026-03-18T21:16:57,382 Created temporary directory: /tmp/pip-wheel-9wlj8m8p 2026-03-18T21:16:57,385 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-18T21:16:57,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-uiiitcyw 2026-03-18T21:16:57,409 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-18T21:16:57,412 2 location(s) to search for versions of cholla-chem: 2026-03-18T21:16:57,412 * https://pypi.org/simple/cholla-chem/ 2026-03-18T21:16:57,412 * https://www.piwheels.org/simple/cholla-chem/ 2026-03-18T21:16:57,413 Fetching project page and analyzing links: https://pypi.org/simple/cholla-chem/ 2026-03-18T21:16:57,414 Getting page https://pypi.org/simple/cholla-chem/ 2026-03-18T21:16:57,415 Found index url https://pypi.org/simple 2026-03-18T21:16:57,629 Fetched page https://pypi.org/simple/cholla-chem/ as application/vnd.pypi.simple.v1+json 2026-03-18T21:16:57,630 Skipping link: No binaries permitted for cholla-chem: https://files.pythonhosted.org/packages/fe/ac/8e9cc84417e79cd81d121214ac72ce3cc75f2786ae28a798f4804bfaec99/cholla_chem-0.2.0-py3-none-any.whl (from https://pypi.org/simple/cholla-chem/) (requires-python:>=3.10) 2026-03-18T21:16:57,631 Found link https://files.pythonhosted.org/packages/94/32/e7bc46580b99e884ba9767683acdf96d974d9c8cdc35ba96cfeca9e666c9/cholla_chem-0.2.0.tar.gz (from https://pypi.org/simple/cholla-chem/) (requires-python:>=3.10), version: 0.2.0 2026-03-18T21:16:57,632 Fetching project page and analyzing links: https://www.piwheels.org/simple/cholla-chem/ 2026-03-18T21:16:57,632 Getting page https://www.piwheels.org/simple/cholla-chem/ 2026-03-18T21:16:57,634 Found index url https://www.piwheels.org/simple 2026-03-18T21:16:57,785 Fetched page https://www.piwheels.org/simple/cholla-chem/ as text/html 2026-03-18T21:16:57,786 Skipping link: not a file: https://www.piwheels.org/simple/cholla-chem/ 2026-03-18T21:16:57,787 Skipping link: not a file: https://pypi.org/simple/cholla-chem/ 2026-03-18T21:16:57,807 Given no hashes to check 1 links for project 'cholla-chem': discarding no candidates 2026-03-18T21:16:57,826 Collecting cholla-chem==0.2.0 2026-03-18T21:16:57,829 Created temporary directory: /tmp/pip-unpack-a_fbq_af 2026-03-18T21:16:58,045 Downloading cholla_chem-0.2.0.tar.gz (13.1 MB) 2026-03-18T21:17:00,394 Added cholla-chem==0.2.0 from https://files.pythonhosted.org/packages/94/32/e7bc46580b99e884ba9767683acdf96d974d9c8cdc35ba96cfeca9e666c9/cholla_chem-0.2.0.tar.gz to build tracker '/tmp/pip-build-tracker-i6zymt62' 2026-03-18T21:17:00,400 Created temporary directory: /tmp/pip-build-env-xgiy2q5h 2026-03-18T21:17:00,404 Installing build dependencies: started 2026-03-18T21:17:00,405 Running command pip subprocess to install build dependencies 2026-03-18T21:17:01,534 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-18T21:17:02,098 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-18T21:17:02,120 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-18T21:17:04,058 Collecting setuptools>=61.0 2026-03-18T21:17:04,152 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-18T21:17:04,424 Collecting wheel 2026-03-18T21:17:04,438 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-18T21:17:04,621 Collecting packaging>=24.0 2026-03-18T21:17:04,637 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-18T21:17:07,566 Installing collected packages: setuptools, packaging, wheel 2026-03-18T21:17:11,016 Creating /tmp/pip-build-env-xgiy2q5h/overlay/local/bin 2026-03-18T21:17:11,017 changing mode of /tmp/pip-build-env-xgiy2q5h/overlay/local/bin/wheel to 755 2026-03-18T21:17:11,037 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-18T21:17:11,315 Installing build dependencies: finished with status 'done' 2026-03-18T21:17:11,322 Getting requirements to build wheel: started 2026-03-18T21:17:11,323 Running command Getting requirements to build wheel 2026-03-18T21:17:12,003 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:12,003 !! 2026-03-18T21:17:12,004 ******************************************************************************** 2026-03-18T21:17:12,004 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:12,005 License :: OSI Approved :: MIT License 2026-03-18T21:17:12,007 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:12,007 ******************************************************************************** 2026-03-18T21:17:12,009 !! 2026-03-18T21:17:12,009 dist._finalize_license_expression() 2026-03-18T21:17:12,010 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:12,011 !! 2026-03-18T21:17:12,012 ******************************************************************************** 2026-03-18T21:17:12,012 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:12,013 License :: OSI Approved :: MIT License 2026-03-18T21:17:12,014 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:12,015 ******************************************************************************** 2026-03-18T21:17:12,016 !! 2026-03-18T21:17:12,017 self._finalize_license_expression() 2026-03-18T21:17:12,017 running egg_info 2026-03-18T21:17:12,022 writing cholla_chem.egg-info/PKG-INFO 2026-03-18T21:17:12,026 writing dependency_links to cholla_chem.egg-info/dependency_links.txt 2026-03-18T21:17:12,027 writing entry points to cholla_chem.egg-info/entry_points.txt 2026-03-18T21:17:12,029 writing requirements to cholla_chem.egg-info/requires.txt 2026-03-18T21:17:12,030 writing top-level names to cholla_chem.egg-info/top_level.txt 2026-03-18T21:17:12,064 reading manifest file 'cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:12,069 adding license file 'LICENSE' 2026-03-18T21:17:12,074 writing manifest file 'cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:12,171 Getting requirements to build wheel: finished with status 'done' 2026-03-18T21:17:12,174 Created temporary directory: /tmp/pip-modern-metadata-02c2cmzw 2026-03-18T21:17:12,177 Preparing metadata (pyproject.toml): started 2026-03-18T21:17:12,178 Running command Preparing metadata (pyproject.toml) 2026-03-18T21:17:12,811 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:12,811 !! 2026-03-18T21:17:12,812 ******************************************************************************** 2026-03-18T21:17:12,813 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:12,814 License :: OSI Approved :: MIT License 2026-03-18T21:17:12,815 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:12,815 ******************************************************************************** 2026-03-18T21:17:12,816 !! 2026-03-18T21:17:12,817 dist._finalize_license_expression() 2026-03-18T21:17:12,817 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:12,818 !! 2026-03-18T21:17:12,819 ******************************************************************************** 2026-03-18T21:17:12,819 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:12,820 License :: OSI Approved :: MIT License 2026-03-18T21:17:12,822 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:12,822 ******************************************************************************** 2026-03-18T21:17:12,823 !! 2026-03-18T21:17:12,823 self._finalize_license_expression() 2026-03-18T21:17:12,825 running dist_info 2026-03-18T21:17:12,835 creating /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info 2026-03-18T21:17:12,836 writing /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/PKG-INFO 2026-03-18T21:17:12,840 writing dependency_links to /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/dependency_links.txt 2026-03-18T21:17:12,841 writing entry points to /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/entry_points.txt 2026-03-18T21:17:12,843 writing requirements to /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/requires.txt 2026-03-18T21:17:12,844 writing top-level names to /tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/top_level.txt 2026-03-18T21:17:12,845 writing manifest file '/tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:12,875 reading manifest file '/tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:12,877 adding license file 'LICENSE' 2026-03-18T21:17:12,881 writing manifest file '/tmp/pip-modern-metadata-02c2cmzw/cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:12,882 creating '/tmp/pip-modern-metadata-02c2cmzw/cholla_chem-0.2.0.dist-info' 2026-03-18T21:17:13,016 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-18T21:17:13,022 Source in /tmp/pip-wheel-9wlj8m8p/cholla-chem_6ff8123aa0e84518b59f03990dfc557c has version 0.2.0, which satisfies requirement cholla-chem==0.2.0 from https://files.pythonhosted.org/packages/94/32/e7bc46580b99e884ba9767683acdf96d974d9c8cdc35ba96cfeca9e666c9/cholla_chem-0.2.0.tar.gz 2026-03-18T21:17:13,022 Removed cholla-chem==0.2.0 from https://files.pythonhosted.org/packages/94/32/e7bc46580b99e884ba9767683acdf96d974d9c8cdc35ba96cfeca9e666c9/cholla_chem-0.2.0.tar.gz from build tracker '/tmp/pip-build-tracker-i6zymt62' 2026-03-18T21:17:13,028 Created temporary directory: /tmp/pip-unpack-fzw03s6u 2026-03-18T21:17:13,029 Building wheels for collected packages: cholla-chem 2026-03-18T21:17:13,034 Created temporary directory: /tmp/pip-wheel-qs01erqf 2026-03-18T21:17:13,034 Destination directory: /tmp/pip-wheel-qs01erqf 2026-03-18T21:17:13,036 Building wheel for cholla-chem (pyproject.toml): started 2026-03-18T21:17:13,038 Running command Building wheel for cholla-chem (pyproject.toml) 2026-03-18T21:17:13,651 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:13,651 !! 2026-03-18T21:17:13,653 ******************************************************************************** 2026-03-18T21:17:13,653 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:13,654 License :: OSI Approved :: MIT License 2026-03-18T21:17:13,655 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:13,655 ******************************************************************************** 2026-03-18T21:17:13,656 !! 2026-03-18T21:17:13,657 dist._finalize_license_expression() 2026-03-18T21:17:13,658 /tmp/pip-build-env-xgiy2q5h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-18T21:17:13,658 !! 2026-03-18T21:17:13,659 ******************************************************************************** 2026-03-18T21:17:13,660 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-18T21:17:13,661 License :: OSI Approved :: MIT License 2026-03-18T21:17:13,662 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-18T21:17:13,662 ******************************************************************************** 2026-03-18T21:17:13,663 !! 2026-03-18T21:17:13,664 self._finalize_license_expression() 2026-03-18T21:17:13,664 running bdist_wheel 2026-03-18T21:17:13,678 running build 2026-03-18T21:17:13,678 running build_py 2026-03-18T21:17:13,684 creating build/lib/cholla_chem 2026-03-18T21:17:13,686 copying cholla_chem/smiles_selector.py -> build/lib/cholla_chem 2026-03-18T21:17:13,689 copying cholla_chem/types.py -> build/lib/cholla_chem 2026-03-18T21:17:13,690 copying cholla_chem/cli.py -> build/lib/cholla_chem 2026-03-18T21:17:13,692 copying cholla_chem/__init__.py -> build/lib/cholla_chem 2026-03-18T21:17:13,694 copying cholla_chem/main.py -> build/lib/cholla_chem 2026-03-18T21:17:13,698 creating build/lib/tests 2026-03-18T21:17:13,700 copying tests/test_main.py -> build/lib/tests 2026-03-18T21:17:13,703 copying tests/test_smiles_selector.py -> build/lib/tests 2026-03-18T21:17:13,705 copying tests/test_ocr_map_consistency.py -> build/lib/tests 2026-03-18T21:17:13,707 copying tests/test_structural_formula_resolver.py -> build/lib/tests 2026-03-18T21:17:13,709 copying tests/test_manual_resolver.py -> build/lib/tests 2026-03-18T21:17:13,711 copying tests/test_pubchem_resolver.py -> build/lib/tests 2026-03-18T21:17:13,713 copying tests/test_opsin_resolver.py -> build/lib/tests 2026-03-18T21:17:13,716 copying tests/test_cirpy_resolver.py -> build/lib/tests 2026-03-18T21:17:13,718 copying tests/test_split_name_name_manipulation.py -> build/lib/tests 2026-03-18T21:17:13,719 copying tests/test_chemspipy_resolver.py -> build/lib/tests 2026-03-18T21:17:13,722 creating build/lib/scripts 2026-03-18T21:17:13,723 copying scripts/build_flashtext_ocr_maps.py -> build/lib/scripts 2026-03-18T21:17:13,725 copying scripts/__init__.py -> build/lib/scripts 2026-03-18T21:17:13,727 creating build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,728 copying cholla_chem/name_manipulation/manipulate_names.py -> build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,730 copying cholla_chem/name_manipulation/__init__.py -> build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,732 copying cholla_chem/name_manipulation/unicode_normalization.py -> build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,734 copying cholla_chem/name_manipulation/peptide_shorthand_handler.py -> build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,736 copying cholla_chem/name_manipulation/split_names.py -> build/lib/cholla_chem/name_manipulation 2026-03-18T21:17:13,739 creating build/lib/cholla_chem/utils 2026-03-18T21:17:13,740 copying cholla_chem/utils/file_utils.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,742 copying cholla_chem/utils/chem_utils.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,744 copying cholla_chem/utils/constants.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,747 copying cholla_chem/utils/logging_config.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,748 copying cholla_chem/utils/string_utils.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,750 copying cholla_chem/utils/__init__.py -> build/lib/cholla_chem/utils 2026-03-18T21:17:13,752 creating build/lib/cholla_chem/datafiles 2026-03-18T21:17:13,753 copying cholla_chem/datafiles/__init__.py -> build/lib/cholla_chem/datafiles 2026-03-18T21:17:13,755 creating build/lib/cholla_chem/resolvers 2026-03-18T21:17:13,756 copying cholla_chem/resolvers/__init__.py -> build/lib/cholla_chem/resolvers 2026-03-18T21:17:13,758 copying cholla_chem/resolvers/chemspipy_resolver.py -> build/lib/cholla_chem/resolvers 2026-03-18T21:17:13,759 copying cholla_chem/resolvers/cirpy_resolver.py -> build/lib/cholla_chem/resolvers 2026-03-18T21:17:13,761 copying cholla_chem/resolvers/manual_resolver.py -> build/lib/cholla_chem/resolvers 2026-03-18T21:17:13,764 creating build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,765 copying cholla_chem/name_manipulation/name_correction/build_flashtext_ocr_map.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,767 copying cholla_chem/name_manipulation/name_correction/dataclasses.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,769 copying cholla_chem/name_manipulation/name_correction/name_corrector.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,772 copying cholla_chem/name_manipulation/name_correction/__init__.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,773 copying cholla_chem/name_manipulation/name_correction/validators.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,775 copying cholla_chem/name_manipulation/name_correction/correction_strategies.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,778 copying cholla_chem/name_manipulation/name_correction/regexes.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,780 copying cholla_chem/name_manipulation/name_correction/scoring.py -> build/lib/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:13,783 creating build/lib/cholla_chem/datafiles/name_dicts 2026-03-18T21:17:13,784 copying cholla_chem/datafiles/name_dicts/__init__.py -> build/lib/cholla_chem/datafiles/name_dicts 2026-03-18T21:17:13,786 creating build/lib/cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:13,787 copying cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver_tokens.py -> build/lib/cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:13,789 copying cholla_chem/resolvers/structural_formula_resolver/__init__.py -> build/lib/cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:13,790 copying cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver.py -> build/lib/cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:13,794 creating build/lib/cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:13,795 copying cholla_chem/resolvers/inorganic_resolver/__init__.py -> build/lib/cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:13,797 copying cholla_chem/resolvers/inorganic_resolver/inorganic_resolver_tokens.py -> build/lib/cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:13,802 copying cholla_chem/resolvers/inorganic_resolver/inorganic_resolver.py -> build/lib/cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:13,805 creating build/lib/cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:13,806 copying cholla_chem/resolvers/opsin_resolver/opsin_resolver.py -> build/lib/cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:13,809 copying cholla_chem/resolvers/opsin_resolver/__init__.py -> build/lib/cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:13,811 creating build/lib/cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:13,812 copying cholla_chem/resolvers/pubchem_resolver/__init__.py -> build/lib/cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:13,813 copying cholla_chem/resolvers/pubchem_resolver/pubchem_resolver.py -> build/lib/cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:13,815 running egg_info 2026-03-18T21:17:13,825 writing cholla_chem.egg-info/PKG-INFO 2026-03-18T21:17:13,828 writing dependency_links to cholla_chem.egg-info/dependency_links.txt 2026-03-18T21:17:13,829 writing entry points to cholla_chem.egg-info/entry_points.txt 2026-03-18T21:17:13,831 writing requirements to cholla_chem.egg-info/requires.txt 2026-03-18T21:17:13,832 writing top-level names to cholla_chem.egg-info/top_level.txt 2026-03-18T21:17:13,852 reading manifest file 'cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:13,857 adding license file 'LICENSE' 2026-03-18T21:17:13,862 writing manifest file 'cholla_chem.egg-info/SOURCES.txt' 2026-03-18T21:17:13,871 copying cholla_chem/datafiles/chemical_name_tokens.json -> build/lib/cholla_chem/datafiles 2026-03-18T21:17:13,875 copying cholla_chem/datafiles/name_dicts/manual_name_dict.json -> build/lib/cholla_chem/datafiles/name_dicts 2026-03-18T21:17:13,878 copying cholla_chem/datafiles/opsin-cli-2.8.0-jar-with-dependencies.jar -> build/lib/cholla_chem/datafiles 2026-03-18T21:17:14,091 installing to build/bdist.linux-armv7l/wheel 2026-03-18T21:17:14,091 running install 2026-03-18T21:17:14,114 running install_lib 2026-03-18T21:17:14,134 creating build/bdist.linux-armv7l/wheel 2026-03-18T21:17:14,137 creating build/bdist.linux-armv7l/wheel/cholla_chem 2026-03-18T21:17:14,138 copying build/lib/cholla_chem/smiles_selector.py -> build/bdist.linux-armv7l/wheel/./cholla_chem 2026-03-18T21:17:14,141 creating build/bdist.linux-armv7l/wheel/cholla_chem/name_manipulation 2026-03-18T21:17:14,143 copying build/lib/cholla_chem/name_manipulation/manipulate_names.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation 2026-03-18T21:17:14,145 copying build/lib/cholla_chem/name_manipulation/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation 2026-03-18T21:17:14,146 copying build/lib/cholla_chem/name_manipulation/unicode_normalization.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation 2026-03-18T21:17:14,148 copying build/lib/cholla_chem/name_manipulation/peptide_shorthand_handler.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation 2026-03-18T21:17:14,151 creating build/bdist.linux-armv7l/wheel/cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,152 copying build/lib/cholla_chem/name_manipulation/name_correction/build_flashtext_ocr_map.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,155 copying build/lib/cholla_chem/name_manipulation/name_correction/dataclasses.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,157 copying build/lib/cholla_chem/name_manipulation/name_correction/name_corrector.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,160 copying build/lib/cholla_chem/name_manipulation/name_correction/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,161 copying build/lib/cholla_chem/name_manipulation/name_correction/validators.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,163 copying build/lib/cholla_chem/name_manipulation/name_correction/correction_strategies.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,166 copying build/lib/cholla_chem/name_manipulation/name_correction/regexes.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,168 copying build/lib/cholla_chem/name_manipulation/name_correction/scoring.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation/name_correction 2026-03-18T21:17:14,170 copying build/lib/cholla_chem/name_manipulation/split_names.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/name_manipulation 2026-03-18T21:17:14,172 copying build/lib/cholla_chem/types.py -> build/bdist.linux-armv7l/wheel/./cholla_chem 2026-03-18T21:17:14,174 creating build/bdist.linux-armv7l/wheel/cholla_chem/utils 2026-03-18T21:17:14,175 copying build/lib/cholla_chem/utils/file_utils.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,178 copying build/lib/cholla_chem/utils/chem_utils.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,180 copying build/lib/cholla_chem/utils/constants.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,182 copying build/lib/cholla_chem/utils/logging_config.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,184 copying build/lib/cholla_chem/utils/string_utils.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,186 copying build/lib/cholla_chem/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/utils 2026-03-18T21:17:14,187 copying build/lib/cholla_chem/cli.py -> build/bdist.linux-armv7l/wheel/./cholla_chem 2026-03-18T21:17:14,189 copying build/lib/cholla_chem/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem 2026-03-18T21:17:14,191 copying build/lib/cholla_chem/main.py -> build/bdist.linux-armv7l/wheel/./cholla_chem 2026-03-18T21:17:14,194 creating build/bdist.linux-armv7l/wheel/cholla_chem/datafiles 2026-03-18T21:17:14,195 creating build/bdist.linux-armv7l/wheel/cholla_chem/datafiles/name_dicts 2026-03-18T21:17:14,196 copying build/lib/cholla_chem/datafiles/name_dicts/manual_name_dict.json -> build/bdist.linux-armv7l/wheel/./cholla_chem/datafiles/name_dicts 2026-03-18T21:17:14,200 copying build/lib/cholla_chem/datafiles/name_dicts/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/datafiles/name_dicts 2026-03-18T21:17:14,201 copying build/lib/cholla_chem/datafiles/chemical_name_tokens.json -> build/bdist.linux-armv7l/wheel/./cholla_chem/datafiles 2026-03-18T21:17:14,205 copying build/lib/cholla_chem/datafiles/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/datafiles 2026-03-18T21:17:14,206 copying build/lib/cholla_chem/datafiles/opsin-cli-2.8.0-jar-with-dependencies.jar -> build/bdist.linux-armv7l/wheel/./cholla_chem/datafiles 2026-03-18T21:17:14,708 creating build/bdist.linux-armv7l/wheel/cholla_chem/resolvers 2026-03-18T21:17:14,710 creating build/bdist.linux-armv7l/wheel/cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:14,711 copying build/lib/cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver_tokens.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:14,713 copying build/lib/cholla_chem/resolvers/structural_formula_resolver/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:14,715 copying build/lib/cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/structural_formula_resolver 2026-03-18T21:17:14,718 creating build/bdist.linux-armv7l/wheel/cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:14,719 copying build/lib/cholla_chem/resolvers/inorganic_resolver/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:14,721 copying build/lib/cholla_chem/resolvers/inorganic_resolver/inorganic_resolver_tokens.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:14,726 copying build/lib/cholla_chem/resolvers/inorganic_resolver/inorganic_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/inorganic_resolver 2026-03-18T21:17:14,729 creating build/bdist.linux-armv7l/wheel/cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:14,730 copying build/lib/cholla_chem/resolvers/opsin_resolver/opsin_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:14,733 copying build/lib/cholla_chem/resolvers/opsin_resolver/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/opsin_resolver 2026-03-18T21:17:14,734 copying build/lib/cholla_chem/resolvers/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers 2026-03-18T21:17:14,736 copying build/lib/cholla_chem/resolvers/chemspipy_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers 2026-03-18T21:17:14,738 copying build/lib/cholla_chem/resolvers/cirpy_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers 2026-03-18T21:17:14,740 creating build/bdist.linux-armv7l/wheel/cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:14,741 copying build/lib/cholla_chem/resolvers/pubchem_resolver/__init__.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:14,743 copying build/lib/cholla_chem/resolvers/pubchem_resolver/pubchem_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers/pubchem_resolver 2026-03-18T21:17:14,745 copying build/lib/cholla_chem/resolvers/manual_resolver.py -> build/bdist.linux-armv7l/wheel/./cholla_chem/resolvers 2026-03-18T21:17:14,747 creating build/bdist.linux-armv7l/wheel/tests 2026-03-18T21:17:14,748 copying build/lib/tests/test_main.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,751 copying build/lib/tests/test_smiles_selector.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,753 copying build/lib/tests/test_ocr_map_consistency.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,755 copying build/lib/tests/test_structural_formula_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,757 copying build/lib/tests/test_manual_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,759 copying build/lib/tests/test_pubchem_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,761 copying build/lib/tests/test_opsin_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,764 copying build/lib/tests/test_cirpy_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,766 copying build/lib/tests/test_split_name_name_manipulation.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,767 copying build/lib/tests/test_chemspipy_resolver.py -> build/bdist.linux-armv7l/wheel/./tests 2026-03-18T21:17:14,770 creating build/bdist.linux-armv7l/wheel/scripts 2026-03-18T21:17:14,771 copying build/lib/scripts/build_flashtext_ocr_maps.py -> build/bdist.linux-armv7l/wheel/./scripts 2026-03-18T21:17:14,773 copying build/lib/scripts/__init__.py -> build/bdist.linux-armv7l/wheel/./scripts 2026-03-18T21:17:14,774 running install_egg_info 2026-03-18T21:17:14,779 Copying cholla_chem.egg-info to build/bdist.linux-armv7l/wheel/./cholla_chem-0.2.0-py3.11.egg-info 2026-03-18T21:17:14,793 running install_scripts 2026-03-18T21:17:14,805 creating build/bdist.linux-armv7l/wheel/cholla_chem-0.2.0.dist-info/WHEEL 2026-03-18T21:17:14,808 creating '/tmp/pip-wheel-qs01erqf/.tmp-ju0_zzvj/cholla_chem-0.2.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-18T21:17:14,810 adding 'cholla_chem/__init__.py' 2026-03-18T21:17:14,812 adding 'cholla_chem/cli.py' 2026-03-18T21:17:14,816 adding 'cholla_chem/main.py' 2026-03-18T21:17:14,818 adding 'cholla_chem/smiles_selector.py' 2026-03-18T21:17:14,819 adding 'cholla_chem/types.py' 2026-03-18T21:17:14,821 adding 'cholla_chem/datafiles/__init__.py' 2026-03-18T21:17:14,838 adding 'cholla_chem/datafiles/chemical_name_tokens.json' 2026-03-18T21:17:16,797 adding 'cholla_chem/datafiles/opsin-cli-2.8.0-jar-with-dependencies.jar' 2026-03-18T21:17:16,884 adding 'cholla_chem/datafiles/name_dicts/__init__.py' 2026-03-18T21:17:16,891 adding 'cholla_chem/datafiles/name_dicts/manual_name_dict.json' 2026-03-18T21:17:16,893 adding 'cholla_chem/name_manipulation/__init__.py' 2026-03-18T21:17:16,894 adding 'cholla_chem/name_manipulation/manipulate_names.py' 2026-03-18T21:17:16,896 adding 'cholla_chem/name_manipulation/peptide_shorthand_handler.py' 2026-03-18T21:17:16,898 adding 'cholla_chem/name_manipulation/split_names.py' 2026-03-18T21:17:16,899 adding 'cholla_chem/name_manipulation/unicode_normalization.py' 2026-03-18T21:17:16,900 adding 'cholla_chem/name_manipulation/name_correction/__init__.py' 2026-03-18T21:17:16,902 adding 'cholla_chem/name_manipulation/name_correction/build_flashtext_ocr_map.py' 2026-03-18T21:17:16,905 adding 'cholla_chem/name_manipulation/name_correction/correction_strategies.py' 2026-03-18T21:17:16,906 adding 'cholla_chem/name_manipulation/name_correction/dataclasses.py' 2026-03-18T21:17:16,909 adding 'cholla_chem/name_manipulation/name_correction/name_corrector.py' 2026-03-18T21:17:16,910 adding 'cholla_chem/name_manipulation/name_correction/regexes.py' 2026-03-18T21:17:16,912 adding 'cholla_chem/name_manipulation/name_correction/scoring.py' 2026-03-18T21:17:16,913 adding 'cholla_chem/name_manipulation/name_correction/validators.py' 2026-03-18T21:17:16,915 adding 'cholla_chem/resolvers/__init__.py' 2026-03-18T21:17:16,916 adding 'cholla_chem/resolvers/chemspipy_resolver.py' 2026-03-18T21:17:16,918 adding 'cholla_chem/resolvers/cirpy_resolver.py' 2026-03-18T21:17:16,919 adding 'cholla_chem/resolvers/manual_resolver.py' 2026-03-18T21:17:16,921 adding 'cholla_chem/resolvers/inorganic_resolver/__init__.py' 2026-03-18T21:17:16,924 adding 'cholla_chem/resolvers/inorganic_resolver/inorganic_resolver.py' 2026-03-18T21:17:16,934 adding 'cholla_chem/resolvers/inorganic_resolver/inorganic_resolver_tokens.py' 2026-03-18T21:17:16,937 adding 'cholla_chem/resolvers/opsin_resolver/__init__.py' 2026-03-18T21:17:16,939 adding 'cholla_chem/resolvers/opsin_resolver/opsin_resolver.py' 2026-03-18T21:17:16,941 adding 'cholla_chem/resolvers/pubchem_resolver/__init__.py' 2026-03-18T21:17:16,943 adding 'cholla_chem/resolvers/pubchem_resolver/pubchem_resolver.py' 2026-03-18T21:17:16,945 adding 'cholla_chem/resolvers/structural_formula_resolver/__init__.py' 2026-03-18T21:17:16,950 adding 'cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver.py' 2026-03-18T21:17:16,952 adding 'cholla_chem/resolvers/structural_formula_resolver/structural_formula_resolver_tokens.py' 2026-03-18T21:17:16,954 adding 'cholla_chem/utils/__init__.py' 2026-03-18T21:17:16,955 adding 'cholla_chem/utils/chem_utils.py' 2026-03-18T21:17:16,958 adding 'cholla_chem/utils/constants.py' 2026-03-18T21:17:16,960 adding 'cholla_chem/utils/file_utils.py' 2026-03-18T21:17:16,962 adding 'cholla_chem/utils/logging_config.py' 2026-03-18T21:17:16,963 adding 'cholla_chem/utils/string_utils.py' 2026-03-18T21:17:16,966 adding 'cholla_chem-0.2.0.dist-info/licenses/LICENSE' 2026-03-18T21:17:16,967 adding 'scripts/__init__.py' 2026-03-18T21:17:16,969 adding 'scripts/build_flashtext_ocr_maps.py' 2026-03-18T21:17:16,971 adding 'tests/test_chemspipy_resolver.py' 2026-03-18T21:17:16,973 adding 'tests/test_cirpy_resolver.py' 2026-03-18T21:17:16,975 adding 'tests/test_main.py' 2026-03-18T21:17:16,976 adding 'tests/test_manual_resolver.py' 2026-03-18T21:17:16,978 adding 'tests/test_ocr_map_consistency.py' 2026-03-18T21:17:16,979 adding 'tests/test_opsin_resolver.py' 2026-03-18T21:17:16,981 adding 'tests/test_pubchem_resolver.py' 2026-03-18T21:17:16,983 adding 'tests/test_smiles_selector.py' 2026-03-18T21:17:16,984 adding 'tests/test_split_name_name_manipulation.py' 2026-03-18T21:17:16,986 adding 'tests/test_structural_formula_resolver.py' 2026-03-18T21:17:16,987 adding 'cholla_chem-0.2.0.dist-info/METADATA' 2026-03-18T21:17:16,988 adding 'cholla_chem-0.2.0.dist-info/WHEEL' 2026-03-18T21:17:16,989 adding 'cholla_chem-0.2.0.dist-info/entry_points.txt' 2026-03-18T21:17:16,990 adding 'cholla_chem-0.2.0.dist-info/top_level.txt' 2026-03-18T21:17:16,992 adding 'cholla_chem-0.2.0.dist-info/RECORD' 2026-03-18T21:17:17,130 removing build/bdist.linux-armv7l/wheel 2026-03-18T21:17:17,249 Building wheel for cholla-chem (pyproject.toml): finished with status 'done' 2026-03-18T21:17:17,512 Created wheel for cholla-chem: filename=cholla_chem-0.2.0-py3-none-any.whl size=13121356 sha256=740d2376de9542bce7f92f739c6038ca5e1c43ccfc449a8e04dd5a17996a0a3b 2026-03-18T21:17:17,513 Stored in directory: /tmp/pip-ephem-wheel-cache-uiiitcyw/wheels/df/19/f7/ff57777cc4f979365269a6002088332a1d0fa5d7b5c7a17f02 2026-03-18T21:17:17,530 Successfully built cholla-chem 2026-03-18T21:17:17,839 Removed build tracker: '/tmp/pip-build-tracker-i6zymt62'