2026-03-20T12:40:26,944 Created temporary directory: /tmp/pip-ephem-wheel-cache-qoueiitk
2026-03-20T12:40:26,946 Created temporary directory: /tmp/pip-build-tracker-jkkmvyod
2026-03-20T12:40:26,947 Initialized build tracking at /tmp/pip-build-tracker-jkkmvyod
2026-03-20T12:40:26,947 Created build tracker: /tmp/pip-build-tracker-jkkmvyod
2026-03-20T12:40:26,948 Entered build tracker: /tmp/pip-build-tracker-jkkmvyod
2026-03-20T12:40:26,949 Created temporary directory: /tmp/pip-wheel-9zxvm9p7
2026-03-20T12:40:26,952 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-20T12:40:26,954 Created temporary directory: /tmp/pip-ephem-wheel-cache-f0dj2azk
2026-03-20T12:40:26,975 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-20T12:40:26,979 2 location(s) to search for versions of spatialformer:
2026-03-20T12:40:26,979 * https://pypi.org/simple/spatialformer/
2026-03-20T12:40:26,979 * https://www.piwheels.org/simple/spatialformer/
2026-03-20T12:40:26,979 Fetching project page and analyzing links: https://pypi.org/simple/spatialformer/
2026-03-20T12:40:26,980 Getting page https://pypi.org/simple/spatialformer/
2026-03-20T12:40:26,981 Found index url https://pypi.org/simple
2026-03-20T12:40:27,193 Fetched page https://pypi.org/simple/spatialformer/ as application/vnd.pypi.simple.v1+json
2026-03-20T12:40:27,197   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/67/e8/96287c1d40f52743b8b0d95e7ae7edfa5b3dae9ad193ac4fd283bb0726dd/SpatialFormer-0.0.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9)
2026-03-20T12:40:27,198   Found link https://files.pythonhosted.org/packages/57/ed/b3d4ff5a83254298007850bde4d0e575dc5ef44c08f0407045a4ddc5143f/SpatialFormer-0.0.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9), version: 0.0.2
2026-03-20T12:40:27,199   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/61/7f/f281a742e3ef3e3229bb6e6840a45cf151130b28e9ff6ee89f4c01253d42/spatialformer-0.0.20-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8)
2026-03-20T12:40:27,200   Found link https://files.pythonhosted.org/packages/04/6a/e64b79f3c0c14d16ba740d29b12b83bf269b5644127814969c6d8fd42a60/spatialformer-0.0.20.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8), version: 0.0.20
2026-03-20T12:40:27,201   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/81/4a/28b750ea2236955fa02c2810e513b4bafa33167752e8012e5684718bc76f/spatialformer-0.1.1-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10)
2026-03-20T12:40:27,202   Found link https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.1
2026-03-20T12:40:27,202   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/e6/1c/b53e2ee4988b2290f601f0b0271b20e317a7a67769352cd3b9d79fc58bb3/spatialformer-0.1.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10)
2026-03-20T12:40:27,203   Found link https://files.pythonhosted.org/packages/25/86/4f0cdfb8e011e46781ecaa31deb9b07a440302cae6306406e9f394cc62b9/spatialformer-0.1.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.2
2026-03-20T12:40:27,204   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/c8/73/c8063afb0735bfa83c6ed0a4f21743b43eb57c90672ccc7f4b27abac4ac2/spatialformer-0.1.3-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10)
2026-03-20T12:40:27,205   Found link https://files.pythonhosted.org/packages/10/f0/b3fe686dc22e745e23209a8892bacd026a9f61cab192a30df2487383b5e5/spatialformer-0.1.3.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.3
2026-03-20T12:40:27,206   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/05/1d/0beedf110bb7a14c7f2289046a38ab2d160af1cb77aed60d03d1d4ad436c/spatialformer-0.1.4-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10)
2026-03-20T12:40:27,207   Found link https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.4
2026-03-20T12:40:27,207   Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/85/72/fbe9f2043c92b967d39ace23051321e613139f18f0286fb88a35934c8c27/spatialformer-0.1.5-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10)
2026-03-20T12:40:27,208   Found link https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.5
2026-03-20T12:40:27,209 Fetching project page and analyzing links: https://www.piwheels.org/simple/spatialformer/
2026-03-20T12:40:27,209 Getting page https://www.piwheels.org/simple/spatialformer/
2026-03-20T12:40:27,210 Found index url https://www.piwheels.org/simple
2026-03-20T12:40:27,433 Fetched page https://www.piwheels.org/simple/spatialformer/ as text/html
2026-03-20T12:40:27,435 Skipping link: not a file: https://www.piwheels.org/simple/spatialformer/
2026-03-20T12:40:27,435 Skipping link: not a file: https://pypi.org/simple/spatialformer/
2026-03-20T12:40:27,459 Given no hashes to check 1 links for project 'spatialformer': discarding no candidates
2026-03-20T12:40:27,478 Collecting spatialformer==0.1.1
2026-03-20T12:40:27,481   Created temporary directory: /tmp/pip-unpack-1fk8_di9
2026-03-20T12:40:27,706   Downloading spatialformer-0.1.1.tar.gz (3.9 MB)
2026-03-20T12:40:28,527   Added spatialformer==0.1.1 from https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-jkkmvyod'
2026-03-20T12:40:28,528   Running setup.py (path:/tmp/pip-wheel-9zxvm9p7/spatialformer_5601be7f34004228b8ec325bf2591fe8/setup.py) egg_info for package spatialformer
2026-03-20T12:40:28,529   Created temporary directory: /tmp/pip-pip-egg-info-p36a3w4x
2026-03-20T12:40:28,530   Preparing metadata (setup.py): started
2026-03-20T12:40:28,531   Running command python setup.py egg_info
2026-03-20T12:40:29,398   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-20T12:40:29,399   !!

2026-03-20T12:40:29,400           ********************************************************************************
2026-03-20T12:40:29,400           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-20T12:40:29,401           License :: OSI Approved :: MIT License

2026-03-20T12:40:29,403           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-20T12:40:29,403           ********************************************************************************

2026-03-20T12:40:29,404   !!
2026-03-20T12:40:29,405     self._finalize_license_expression()
2026-03-20T12:40:29,428   running egg_info
2026-03-20T12:40:29,454   creating /tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info
2026-03-20T12:40:29,456   writing /tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/PKG-INFO
2026-03-20T12:40:29,459   writing dependency_links to /tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/dependency_links.txt
2026-03-20T12:40:29,461   writing requirements to /tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/requires.txt
2026-03-20T12:40:29,462   writing top-level names to /tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/top_level.txt
2026-03-20T12:40:29,464   writing manifest file '/tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/SOURCES.txt'
2026-03-20T12:40:29,561   reading manifest file '/tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/SOURCES.txt'
2026-03-20T12:40:29,563   reading manifest template 'MANIFEST.in'
2026-03-20T12:40:29,565   warning: no files found matching 'spatialformer/spatial_embeddings/*.json'
2026-03-20T12:40:29,566   adding license file 'LICENSE'
2026-03-20T12:40:29,569   writing manifest file '/tmp/pip-pip-egg-info-p36a3w4x/spatialformer.egg-info/SOURCES.txt'
2026-03-20T12:40:29,678   Preparing metadata (setup.py): finished with status 'done'
2026-03-20T12:40:29,683   Source in /tmp/pip-wheel-9zxvm9p7/spatialformer_5601be7f34004228b8ec325bf2591fe8 has version 0.1.1, which satisfies requirement spatialformer==0.1.1 from https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz
2026-03-20T12:40:29,684   Removed spatialformer==0.1.1 from https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-jkkmvyod'
2026-03-20T12:40:29,689 Created temporary directory: /tmp/pip-unpack-gjddgfn4
2026-03-20T12:40:29,690 Building wheels for collected packages: spatialformer
2026-03-20T12:40:29,695   Created temporary directory: /tmp/pip-wheel-6nbhl29d
2026-03-20T12:40:29,696   Building wheel for spatialformer (setup.py): started
2026-03-20T12:40:29,697   Destination directory: /tmp/pip-wheel-6nbhl29d
2026-03-20T12:40:29,697   Running command python setup.py bdist_wheel
2026-03-20T12:40:30,553   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-20T12:40:30,553   !!

2026-03-20T12:40:30,554           ********************************************************************************
2026-03-20T12:40:30,555           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-20T12:40:30,556           License :: OSI Approved :: MIT License

2026-03-20T12:40:30,557           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-20T12:40:30,558           ********************************************************************************

2026-03-20T12:40:30,559   !!
2026-03-20T12:40:30,559     self._finalize_license_expression()
2026-03-20T12:40:30,560   running bdist_wheel
2026-03-20T12:40:30,685   running build
2026-03-20T12:40:30,685   running build_py
2026-03-20T12:40:30,717   creating build/lib/spatialformer
2026-03-20T12:40:30,719   copying spatialformer/utils.py -> build/lib/spatialformer
2026-03-20T12:40:30,722   copying spatialformer/data_loader.py -> build/lib/spatialformer
2026-03-20T12:40:30,725   copying spatialformer/graphsage.py -> build/lib/spatialformer
2026-03-20T12:40:30,727   copying spatialformer/processor.py -> build/lib/spatialformer
2026-03-20T12:40:30,729   copying spatialformer/train.py -> build/lib/spatialformer
2026-03-20T12:40:30,732   copying spatialformer/GraphSAGE.py -> build/lib/spatialformer
2026-03-20T12:40:30,734   copying spatialformer/__init__.py -> build/lib/spatialformer
2026-03-20T12:40:30,737   creating build/lib/spatialformer/spatial_embeddings
2026-03-20T12:40:30,738   copying spatialformer/spatial_embeddings/__init__.py -> build/lib/spatialformer/spatial_embeddings
2026-03-20T12:40:30,740   creating build/lib/spatialformer/dataloader
2026-03-20T12:40:30,741   copying spatialformer/dataloader/dataloader_paired.py -> build/lib/spatialformer/dataloader
2026-03-20T12:40:30,744   copying spatialformer/dataloader/__init__.py -> build/lib/spatialformer/dataloader
2026-03-20T12:40:30,747   creating build/lib/spatialformer/model
2026-03-20T12:40:30,748   copying spatialformer/model/__init__.py -> build/lib/spatialformer/model
2026-03-20T12:40:30,749   copying spatialformer/model/Spaformer_pair.py -> build/lib/spatialformer/model
2026-03-20T12:40:30,753   copying spatialformer/model/model.py -> build/lib/spatialformer/model
2026-03-20T12:40:30,755   copying spatialformer/model/Spaformer.py -> build/lib/spatialformer/model
2026-03-20T12:40:30,757   copying spatialformer/model/settings.py -> build/lib/spatialformer/model
2026-03-20T12:40:30,759   creating build/lib/spatialformer/tools
2026-03-20T12:40:30,760   copying spatialformer/tools/get_embeddings.py -> build/lib/spatialformer/tools
2026-03-20T12:40:30,763   copying spatialformer/tools/__init__.py -> build/lib/spatialformer/tools
2026-03-20T12:40:30,765   creating build/lib/spatialformer/tokenizer
2026-03-20T12:40:30,766   copying spatialformer/tokenizer/__init__.py -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:30,768   creating build/lib/spatialformer/preprocess
2026-03-20T12:40:30,769   copying spatialformer/preprocess/find_gene_interaction.py -> build/lib/spatialformer/preprocess
2026-03-20T12:40:30,772   copying spatialformer/preprocess/__init__.py -> build/lib/spatialformer/preprocess
2026-03-20T12:40:30,774   creating build/lib/spatialformer/config
2026-03-20T12:40:30,775   copying spatialformer/config/__init__.py -> build/lib/spatialformer/config
2026-03-20T12:40:30,777   creating build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,778   copying spatialformer/gene_gene_calculation/process.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,780   copying spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,783   copying spatialformer/gene_gene_calculation/__init__.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,785   copying spatialformer/gene_gene_calculation/h5toloader.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,787   copying spatialformer/gene_gene_calculation/mask_dataset.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,790   copying spatialformer/gene_gene_calculation/build_h5ad.py -> build/lib/spatialformer/gene_gene_calculation
2026-03-20T12:40:30,793   creating build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,794   copying spatialformer/model/submodules/modules.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,796   copying spatialformer/model/submodules/masked_batchnorm.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,798   copying spatialformer/model/submodules/masked_conv.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,801   copying spatialformer/model/submodules/__init__.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,803   copying spatialformer/model/submodules/flash_attention2.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,806   copying spatialformer/model/submodules/layer_modules.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,808   copying spatialformer/model/submodules/alibi.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,810   copying spatialformer/model/submodules/activations.py -> build/lib/spatialformer/model/submodules
2026-03-20T12:40:30,812   running egg_info
2026-03-20T12:40:30,839   writing spatialformer.egg-info/PKG-INFO
2026-03-20T12:40:30,843   writing dependency_links to spatialformer.egg-info/dependency_links.txt
2026-03-20T12:40:30,845   writing requirements to spatialformer.egg-info/requires.txt
2026-03-20T12:40:30,867   writing top-level names to spatialformer.egg-info/top_level.txt
2026-03-20T12:40:30,908   reading manifest file 'spatialformer.egg-info/SOURCES.txt'
2026-03-20T12:40:30,913   reading manifest template 'MANIFEST.in'
2026-03-20T12:40:30,915   warning: no files found matching 'spatialformer/spatial_embeddings/*.json'
2026-03-20T12:40:30,916   adding license file 'LICENSE'
2026-03-20T12:40:30,920   writing manifest file 'spatialformer.egg-info/SOURCES.txt'
2026-03-20T12:40:30,928   copying spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/lib/spatialformer/spatial_embeddings
2026-03-20T12:40:30,987   copying spatialformer/tokenizer/token.json -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:30,990   copying spatialformer/tokenizer/tokenv2.json -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:30,994   copying spatialformer/tokenizer/tokenv3.json -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:30,997   copying spatialformer/tokenizer/tokenv4.json -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:31,004   copying spatialformer/tokenizer/tokenv5.json -> build/lib/spatialformer/tokenizer
2026-03-20T12:40:31,008   copying spatialformer/config/_config_fine_tune_probe.json -> build/lib/spatialformer/config
2026-03-20T12:40:31,011   copying spatialformer/config/_config_graphsave.json -> build/lib/spatialformer/config
2026-03-20T12:40:31,013   copying spatialformer/config/_config_train.json -> build/lib/spatialformer/config
2026-03-20T12:40:31,015   copying spatialformer/config/_config_train_large_pair.json -> build/lib/spatialformer/config
2026-03-20T12:40:31,017   copying spatialformer/config/_config_train_large_single.json -> build/lib/spatialformer/config
2026-03-20T12:40:31,048   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-03-20T12:40:31,049   !!

2026-03-20T12:40:31,050           ********************************************************************************
2026-03-20T12:40:31,051           Please avoid running ``setup.py`` directly.
2026-03-20T12:40:31,051           Instead, use pypa/build, pypa/installer or other
2026-03-20T12:40:31,052           standards-based tools.

2026-03-20T12:40:31,053           This deprecation is overdue, please update your project and remove deprecated
2026-03-20T12:40:31,054           calls to avoid build errors in the future.

2026-03-20T12:40:31,055           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-03-20T12:40:31,055           ********************************************************************************

2026-03-20T12:40:31,057   !!
2026-03-20T12:40:31,057     self.initialize_options()
2026-03-20T12:40:31,075   installing to build/bdist.linux-armv7l/wheel
2026-03-20T12:40:31,076   running install
2026-03-20T12:40:31,099   running install_lib
2026-03-20T12:40:31,125   creating build/bdist.linux-armv7l/wheel
2026-03-20T12:40:31,127   creating build/bdist.linux-armv7l/wheel/spatialformer
2026-03-20T12:40:31,129   creating build/bdist.linux-armv7l/wheel/spatialformer/spatial_embeddings
2026-03-20T12:40:31,130   copying build/lib/spatialformer/spatial_embeddings/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings
2026-03-20T12:40:31,132   copying build/lib/spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings
2026-03-20T12:40:31,190   copying build/lib/spatialformer/utils.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,193   copying build/lib/spatialformer/data_loader.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,196   copying build/lib/spatialformer/graphsage.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,198   copying build/lib/spatialformer/processor.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,200   copying build/lib/spatialformer/train.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,203   creating build/bdist.linux-armv7l/wheel/spatialformer/dataloader
2026-03-20T12:40:31,204   copying build/lib/spatialformer/dataloader/dataloader_paired.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader
2026-03-20T12:40:31,207   copying build/lib/spatialformer/dataloader/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader
2026-03-20T12:40:31,209   copying build/lib/spatialformer/GraphSAGE.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,212   copying build/lib/spatialformer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer
2026-03-20T12:40:31,214   creating build/bdist.linux-armv7l/wheel/spatialformer/model
2026-03-20T12:40:31,216   creating build/bdist.linux-armv7l/wheel/spatialformer/model/submodules
2026-03-20T12:40:31,217   copying build/lib/spatialformer/model/submodules/modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,219   copying build/lib/spatialformer/model/submodules/masked_batchnorm.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,221   copying build/lib/spatialformer/model/submodules/masked_conv.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,223   copying build/lib/spatialformer/model/submodules/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,225   copying build/lib/spatialformer/model/submodules/flash_attention2.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,228   copying build/lib/spatialformer/model/submodules/layer_modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,230   copying build/lib/spatialformer/model/submodules/alibi.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,232   copying build/lib/spatialformer/model/submodules/activations.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules
2026-03-20T12:40:31,234   copying build/lib/spatialformer/model/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model
2026-03-20T12:40:31,236   copying build/lib/spatialformer/model/Spaformer_pair.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model
2026-03-20T12:40:31,239   copying build/lib/spatialformer/model/model.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model
2026-03-20T12:40:31,242   copying build/lib/spatialformer/model/Spaformer.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model
2026-03-20T12:40:31,245   copying build/lib/spatialformer/model/settings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model
2026-03-20T12:40:31,247   creating build/bdist.linux-armv7l/wheel/spatialformer/tools
2026-03-20T12:40:31,248   copying build/lib/spatialformer/tools/get_embeddings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools
2026-03-20T12:40:31,251   copying build/lib/spatialformer/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools
2026-03-20T12:40:31,254   creating build/bdist.linux-armv7l/wheel/spatialformer/tokenizer
2026-03-20T12:40:31,255   copying build/lib/spatialformer/tokenizer/token.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,257   copying build/lib/spatialformer/tokenizer/tokenv5.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,261   copying build/lib/spatialformer/tokenizer/tokenv4.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,264   copying build/lib/spatialformer/tokenizer/tokenv3.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,267   copying build/lib/spatialformer/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,268   copying build/lib/spatialformer/tokenizer/tokenv2.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer
2026-03-20T12:40:31,273   creating build/bdist.linux-armv7l/wheel/spatialformer/preprocess
2026-03-20T12:40:31,274   copying build/lib/spatialformer/preprocess/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess
2026-03-20T12:40:31,277   copying build/lib/spatialformer/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess
2026-03-20T12:40:31,279   creating build/bdist.linux-armv7l/wheel/spatialformer/config
2026-03-20T12:40:31,280   copying build/lib/spatialformer/config/_config_train_large_pair.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,282   copying build/lib/spatialformer/config/_config_train.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,284   copying build/lib/spatialformer/config/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,285   copying build/lib/spatialformer/config/_config_fine_tune_probe.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,287   copying build/lib/spatialformer/config/_config_graphsave.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,288   copying build/lib/spatialformer/config/_config_train_large_single.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config
2026-03-20T12:40:31,291   creating build/bdist.linux-armv7l/wheel/spatialformer/gene_gene_calculation
2026-03-20T12:40:31,292   copying build/lib/spatialformer/gene_gene_calculation/process.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,295   copying build/lib/spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,297   copying build/lib/spatialformer/gene_gene_calculation/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,299   copying build/lib/spatialformer/gene_gene_calculation/h5toloader.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,301   copying build/lib/spatialformer/gene_gene_calculation/mask_dataset.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,304   copying build/lib/spatialformer/gene_gene_calculation/build_h5ad.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation
2026-03-20T12:40:31,306   running install_egg_info
2026-03-20T12:40:31,339   Copying spatialformer.egg-info to build/bdist.linux-armv7l/wheel/./spatialformer-0.1.1-py3.11.egg-info
2026-03-20T12:40:31,347   running install_scripts
2026-03-20T12:40:31,357   creating build/bdist.linux-armv7l/wheel/spatialformer-0.1.1.dist-info/WHEEL
2026-03-20T12:40:31,360   creating '/tmp/pip-wheel-6nbhl29d/spatialformer-0.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-20T12:40:31,364   adding 'spatialformer/GraphSAGE.py'
2026-03-20T12:40:31,366   adding 'spatialformer/__init__.py'
2026-03-20T12:40:31,369   adding 'spatialformer/data_loader.py'
2026-03-20T12:40:31,372   adding 'spatialformer/graphsage.py'
2026-03-20T12:40:31,373   adding 'spatialformer/processor.py'
2026-03-20T12:40:31,375   adding 'spatialformer/train.py'
2026-03-20T12:40:31,382   adding 'spatialformer/utils.py'
2026-03-20T12:40:31,383   adding 'spatialformer/config/__init__.py'
2026-03-20T12:40:31,385   adding 'spatialformer/config/_config_fine_tune_probe.json'
2026-03-20T12:40:31,386   adding 'spatialformer/config/_config_graphsave.json'
2026-03-20T12:40:31,387   adding 'spatialformer/config/_config_train.json'
2026-03-20T12:40:31,388   adding 'spatialformer/config/_config_train_large_pair.json'
2026-03-20T12:40:31,390   adding 'spatialformer/config/_config_train_large_single.json'
2026-03-20T12:40:31,391   adding 'spatialformer/dataloader/__init__.py'
2026-03-20T12:40:31,399   adding 'spatialformer/dataloader/dataloader_paired.py'
2026-03-20T12:40:31,401   adding 'spatialformer/gene_gene_calculation/__init__.py'
2026-03-20T12:40:31,403   adding 'spatialformer/gene_gene_calculation/build_h5ad.py'
2026-03-20T12:40:31,405   adding 'spatialformer/gene_gene_calculation/find_gene_interaction.py'
2026-03-20T12:40:31,408   adding 'spatialformer/gene_gene_calculation/h5toloader.py'
2026-03-20T12:40:31,410   adding 'spatialformer/gene_gene_calculation/mask_dataset.py'
2026-03-20T12:40:31,412   adding 'spatialformer/gene_gene_calculation/process.py'
2026-03-20T12:40:31,416   adding 'spatialformer/model/Spaformer.py'
2026-03-20T12:40:31,422   adding 'spatialformer/model/Spaformer_pair.py'
2026-03-20T12:40:31,423   adding 'spatialformer/model/__init__.py'
2026-03-20T12:40:31,425   adding 'spatialformer/model/model.py'
2026-03-20T12:40:31,426   adding 'spatialformer/model/settings.py'
2026-03-20T12:40:31,428   adding 'spatialformer/model/submodules/__init__.py'
2026-03-20T12:40:31,429   adding 'spatialformer/model/submodules/activations.py'
2026-03-20T12:40:31,430   adding 'spatialformer/model/submodules/alibi.py'
2026-03-20T12:40:31,434   adding 'spatialformer/model/submodules/flash_attention2.py'
2026-03-20T12:40:31,436   adding 'spatialformer/model/submodules/layer_modules.py'
2026-03-20T12:40:31,437   adding 'spatialformer/model/submodules/masked_batchnorm.py'
2026-03-20T12:40:31,438   adding 'spatialformer/model/submodules/masked_conv.py'
2026-03-20T12:40:31,440   adding 'spatialformer/model/submodules/modules.py'
2026-03-20T12:40:31,442   adding 'spatialformer/preprocess/__init__.py'
2026-03-20T12:40:31,444   adding 'spatialformer/preprocess/find_gene_interaction.py'
2026-03-20T12:40:31,446   adding 'spatialformer/spatial_embeddings/__init__.py'
2026-03-20T12:40:32,029   adding 'spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl'
2026-03-20T12:40:32,055   adding 'spatialformer/tokenizer/__init__.py'
2026-03-20T12:40:32,058   adding 'spatialformer/tokenizer/token.json'
2026-03-20T12:40:32,083   adding 'spatialformer/tokenizer/tokenv2.json'
2026-03-20T12:40:32,091   adding 'spatialformer/tokenizer/tokenv3.json'
2026-03-20T12:40:32,098   adding 'spatialformer/tokenizer/tokenv4.json'
2026-03-20T12:40:32,122   adding 'spatialformer/tokenizer/tokenv5.json'
2026-03-20T12:40:32,125   adding 'spatialformer/tools/__init__.py'
2026-03-20T12:40:32,131   adding 'spatialformer/tools/get_embeddings.py'
2026-03-20T12:40:32,133   adding 'spatialformer-0.1.1.dist-info/licenses/LICENSE'
2026-03-20T12:40:32,134   adding 'spatialformer-0.1.1.dist-info/METADATA'
2026-03-20T12:40:32,135   adding 'spatialformer-0.1.1.dist-info/WHEEL'
2026-03-20T12:40:32,136   adding 'spatialformer-0.1.1.dist-info/top_level.txt'
2026-03-20T12:40:32,137   adding 'spatialformer-0.1.1.dist-info/RECORD'
2026-03-20T12:40:32,181   removing build/bdist.linux-armv7l/wheel
2026-03-20T12:40:32,315   Building wheel for spatialformer (setup.py): finished with status 'done'
2026-03-20T12:40:32,396   Created wheel for spatialformer: filename=spatialformer-0.1.1-py3-none-any.whl size=3936153 sha256=ea17bdcb84caee63440effbdf751abeb1c4dc6dfcfc98f7cf14964e1198d3046
2026-03-20T12:40:32,397   Stored in directory: /tmp/pip-ephem-wheel-cache-f0dj2azk/wheels/10/45/50/66c16f15f068dbc9210a24d9e0c325a61faa908158ec61e0bc
2026-03-20T12:40:32,410 Successfully built spatialformer
2026-03-20T12:40:32,506 Removed build tracker: '/tmp/pip-build-tracker-jkkmvyod'