2026-03-20T14:00:51,005 Created temporary directory: /tmp/pip-ephem-wheel-cache-oe0vrfy3 2026-03-20T14:00:51,007 Created temporary directory: /tmp/pip-build-tracker-697xtf4e 2026-03-20T14:00:51,007 Initialized build tracking at /tmp/pip-build-tracker-697xtf4e 2026-03-20T14:00:51,008 Created build tracker: /tmp/pip-build-tracker-697xtf4e 2026-03-20T14:00:51,008 Entered build tracker: /tmp/pip-build-tracker-697xtf4e 2026-03-20T14:00:51,009 Created temporary directory: /tmp/pip-wheel-duuzl77p 2026-03-20T14:00:51,012 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-20T14:00:51,014 Created temporary directory: /tmp/pip-ephem-wheel-cache-6arbtex2 2026-03-20T14:00:51,040 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-20T14:00:51,044 2 location(s) to search for versions of scipion-em: 2026-03-20T14:00:51,044 * https://pypi.org/simple/scipion-em/ 2026-03-20T14:00:51,044 * https://www.piwheels.org/simple/scipion-em/ 2026-03-20T14:00:51,045 Fetching project page and analyzing links: https://pypi.org/simple/scipion-em/ 2026-03-20T14:00:51,045 Getting page https://pypi.org/simple/scipion-em/ 2026-03-20T14:00:51,047 Found index url https://pypi.org/simple 2026-03-20T14:00:51,399 Fetched page https://pypi.org/simple/scipion-em/ as application/vnd.pypi.simple.v1+json 2026-03-20T14:00:51,429 Found link https://files.pythonhosted.org/packages/71/f7/eca584251d6d615a68a8635e3ee1c43990b9a13002823224332dcbba45ae/scipion-em-3.0.1a1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.1a1 2026-03-20T14:00:51,430 Found link https://files.pythonhosted.org/packages/34/9c/8dece5214614436d544eae73237a15bb6dcf4fc60299c843f9638675314f/scipion-em-3.0.1b1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.1b1 2026-03-20T14:00:51,431 Found link https://files.pythonhosted.org/packages/3a/0a/06f448ffff846cf012261c901272188ce344ca9f53f9dd991719a4840d48/scipion-em-3.0.1b2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.1b2 2026-03-20T14:00:51,432 Found link https://files.pythonhosted.org/packages/58/05/72fafb56cbe12f98ba792fc1227461c4eaa3330bfe3838d465e3a2d61085/scipion-em-3.0.1b3.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.1b3 2026-03-20T14:00:51,433 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/1e/18/6ac7c7192a143ced087c7253ca62bb3f390b2be84d510f61e9363aed55ca/scipion_em-3.0.1b3-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,434 Found link https://files.pythonhosted.org/packages/86/04/04707c6f307a182aa47f79f87feb4ffeeec65e728db9c2b82484123a01c0/scipion-em-3.0.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.1 2026-03-20T14:00:51,435 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/8a/f6/64ee5aadf0edf03b21e5b88950e79d9203a984e1969a288f3ea81322171c/scipion_em-3.0.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,436 Found link https://files.pythonhosted.org/packages/8b/c8/6e2d519d661fa84ee8bdcbc70a57e35876e79fdba7d8bbc9ec796adccaf8/scipion-em-3.0.2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.2 2026-03-20T14:00:51,437 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/8b/b7/710ae89b379a2a7cf5b65dfa39f51bf250eefc6839a58533902486a62539/scipion_em-3.0.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,438 Found link https://files.pythonhosted.org/packages/15/d6/bfe2f26f64a8c75b54db7d1b4fc37e9c6484ccae98022fe900dc15141609/scipion-em-3.0.3.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.3 2026-03-20T14:00:51,439 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/0a/11/e54a7c4191d4826334cf51ad3c2aca33aef49fc5284d27edf92db9a12df1/scipion_em-3.0.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,440 Found link https://files.pythonhosted.org/packages/dd/aa/95ec040c24f81501f0aa35ee3b34d6f8683e2becc635e654bd98923419b0/scipion-em-3.0.4.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.4 2026-03-20T14:00:51,442 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/9d/5b/030c69c5fa4f2e6f7523e72fafe43ef884748140fbf24809c764e80c8bd9/scipion_em-3.0.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,443 Found link https://files.pythonhosted.org/packages/b2/90/7a0e110664d5e329039e924b10d6d8ce4eb721d1d0578c9e2e01cda2aa5a/scipion-em-3.0.5.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.5 2026-03-20T14:00:51,443 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/47/b0/a9fd42bc54525d4ec6b6ad739c5b9af2f469e49237d23f29f24689a591ae/scipion_em-3.0.5-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,444 Found link https://files.pythonhosted.org/packages/43/a4/765956c0a3d07339f57a2fd1305e4cc6138834b98ede9f11c8f8107509cd/scipion-em-3.0.6.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.6 2026-03-20T14:00:51,445 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/13/bf/68dea37409db8598880d57eb7b7455ee874525eb44491121afe028bea2bc/scipion_em-3.0.6-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,446 Found link https://files.pythonhosted.org/packages/d8/4e/6508faf894809de6525651e6b000051facf3baa1c4724bf9e234ac49ae83/scipion-em-3.0.7.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.7 2026-03-20T14:00:51,447 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/6b/f1/a73239ed9b6605e23f9e9713a46684e85d739abe4a150705b24c0b4a71c8/scipion_em-3.0.7-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,448 Found link https://files.pythonhosted.org/packages/9b/6f/7704c3461b1f7d27c1e2c937d58add7b582f56ccaaa853b83457fb2cb33b/scipion-em-3.0.8.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.8 2026-03-20T14:00:51,449 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/c9/55/5f24d5a68161decff57264c5ae48c12e0c10944665e4f845828a03886d1f/scipion_em-3.0.8-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,450 Found link https://files.pythonhosted.org/packages/08/8a/23357ef1524e9d7564598f3f80aacf38b42fb76b8d5208f64f0114ae8353/scipion-em-3.0.9.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.9 2026-03-20T14:00:51,451 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ab/e7/78ae166471453333ccb589796d99d73397b73aa767e7d26d52372c702aeb/scipion_em-3.0.9-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,452 Found link https://files.pythonhosted.org/packages/63/ce/f772604a22f3aa01166e6adfe3dd4d5820b53f023bc87eeddac8c085d958/scipion-em-3.0.10.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.10 2026-03-20T14:00:51,453 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/b2/f9/6394919c50271fd71c78561b9ce22f62a82b9ac328aa5fec95cc01ec6aea/scipion_em-3.0.10-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,454 Found link https://files.pythonhosted.org/packages/ee/f5/dec10178659f4413b3fee39420d7bad52371cff5a39f4811a55e116abf40/scipion-em-3.0.11.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.11 2026-03-20T14:00:51,455 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ea/e0/5de4b2dfd79bc20eb49c5cfcadfc501b9bcfa644be2bf3508ba3b2ee23f0/scipion_em-3.0.11-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,456 Found link https://files.pythonhosted.org/packages/c2/16/1c4b1a40f4bc6cf53ed3ff76feae92ca150fac40db6b7b62346e6f89013c/scipion-em-3.0.12.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.12 2026-03-20T14:00:51,458 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/bd/a7/317e89738c562d26f51cdd213303d65d0b1df5abf103a23d7e45858c0ab5/scipion_em-3.0.12-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,458 Found link https://files.pythonhosted.org/packages/33/a5/f00b50cf395fc439fe59d9c54670a1c395750236af50e87b61015a64dc54/scipion-em-3.0.13.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.13 2026-03-20T14:00:51,459 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/82/3f/326613b25133e4e19f031156b78de1006869f9f3265cf0ee4d49a5aec910/scipion_em-3.0.13-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,460 Found link https://files.pythonhosted.org/packages/99/13/1c21037c9c83eb2192f4c35e6a5ba20bc5bf1dd95578ab2031cfe885c521/scipion-em-3.0.14.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.14 2026-03-20T14:00:51,461 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/54/47/a226ed731db42bbf76464651de0834ff539a4234009120a418238e7e4a97/scipion_em-3.0.14-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,461 Found link https://files.pythonhosted.org/packages/5c/76/b5cd43e561c423b65c135e8d4266f552d4199324b80882659c3329e21ee7/scipion-em-3.0.15.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.15 2026-03-20T14:00:51,462 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/36/39/0acc59a812164229b7d5a2fe0b82151afe8dc5f8ffe3002de0fc04a76430/scipion_em-3.0.15-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,463 Found link https://files.pythonhosted.org/packages/38/89/47860fd20445f5bee7f6ef10518de5c2f0eccfe2a38384f8d5b11f24714a/scipion-em-3.0.16.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.16 2026-03-20T14:00:51,464 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ff/28/9458e7fb56ad7532a23e9fbd3f7f1398ee9a5d30d9b4db6c4b4d45e4b9e7/scipion_em-3.0.16-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,465 Found link https://files.pythonhosted.org/packages/f7/3f/fe2bb17ba12f41340e0b4052ab7b5c9b9777510a3cac04564f561a76cc72/scipion-em-3.0.17.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.17 2026-03-20T14:00:51,466 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/88/8a/6dfc729d7a5f6199da89ff44591eb0a596da0530ffaaf69cc60d5dae85e9/scipion_em-3.0.17-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,467 Found link https://files.pythonhosted.org/packages/fd/1f/44fefc8a8bd42bb2cecd8a3566768b91e0bb355993979322b05745e89a91/scipion-em-3.0.18.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.18 2026-03-20T14:00:51,467 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/91/6d/1852e1ed0c36f0b7d5e9266ac11eb3d26f2030fae6fbf797d6cdc841dbc2/scipion_em-3.0.18-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,468 Found link https://files.pythonhosted.org/packages/98/a8/f3820783ee6f94be47014ccacd0a985751ea77bc00c02bd36ce81bf96b52/scipion-em-3.0.19.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.19 2026-03-20T14:00:51,469 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/76/03/4852e9ee1f951d86fa4bc39e5edcccc9610e953fbd1a5842e9fde21da427/scipion_em-3.0.19-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,470 Found link https://files.pythonhosted.org/packages/d1/81/cee59d2f4ae8212c3334402fa4658d016ab5398a37fb5ce00073e8499ac6/scipion-em-3.0.20.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.20 2026-03-20T14:00:51,471 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/3d/61/5dcabe64f861ef66fb564a45fa06b2c037807384cb46d1553dae838a408a/scipion_em-3.0.20-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,472 Found link https://files.pythonhosted.org/packages/5d/ae/bcfa8d2444e7b221455273660badd591819270baeb2c61a71aeac261d38e/scipion-em-3.0.21.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.21 2026-03-20T14:00:51,473 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/06/14/a6d6ab195611afd795476dde8b404e818b08c38f8c56d65babc646286256/scipion_em-3.0.21-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,474 Found link https://files.pythonhosted.org/packages/0f/de/1969ace2ef29b7c06750e5d87534c7584749af697dbedb2331410e97a86f/scipion-em-3.0.22.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.22 2026-03-20T14:00:51,474 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/a3/61/a3439ff662faebad60af056a9acc233e431b19037e1757c7e43cff9e834d/scipion_em-3.0.22-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,475 Found link https://files.pythonhosted.org/packages/23/cb/e100a0c7d9eefe480181b3efb9060140d9bfc0329db20b63509fd881ed95/scipion-em-3.0.23.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.23 2026-03-20T14:00:51,476 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/6b/c7/366beb5d71ad4f6735b5167b52f84ac008ec92fc83c41bd8ad0bef919f04/scipion_em-3.0.23-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,477 Found link https://files.pythonhosted.org/packages/83/55/152cbc5f9c2a94c373a0dd4ab5366afeeb9a1c04426dd12a61fb8ac3dc23/scipion-em-3.0.24.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.0.24 2026-03-20T14:00:51,477 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/6a/c2/bfc6b093ff5afb619364c57c2e93338a9b9f1fcf72f9ffe8a662d0676df1/scipion_em-3.0.24-py3-none-any.whl (from 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https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,487 Found link https://files.pythonhosted.org/packages/7a/68/dcd48f179cee100bf5b7f4e26e6fedfd0792538b0be9e7a0d1d47a7dbc3f/scipion-em-3.2.2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.2.2 2026-03-20T14:00:51,487 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/d5/5e/212081b51db19c81dd5bbd4370d9293162d79e3328f5cb0217808229a98b/scipion_em-3.2.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,488 Found link https://files.pythonhosted.org/packages/0e/e6/6babd1c3c30ab6236e9d9d16e7a7be7999090557fb49d359a62d4f52bcbd/scipion-em-3.3.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.3.0 2026-03-20T14:00:51,488 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/f7/1d/178b59fda212e5388810bbea1279a5857977ca374dde72a256fffb07f382/scipion_em-3.3.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,489 Found link https://files.pythonhosted.org/packages/1e/44/40c4c3235334aad8cfe02a99805041da806bf499d8c54087d940e4da6a09/scipion-em-3.3.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.3.1 2026-03-20T14:00:51,490 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/b1/37/5a49a7bb9a40e1790f04916be45048eeaf9a721f6a4e8c4d28b3e9f66989/scipion_em-3.3.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,491 Found link https://files.pythonhosted.org/packages/32/84/68ab69633c0ac28d43b5be3b1d8113ad9444026b47fd98cb833e9372626c/scipion-em-3.4.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.4.0 2026-03-20T14:00:51,491 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ac/fc/393b01a2609b233fe77cfc27b358e5999eb16c4d6b91d2a7d6b1804296d5/scipion_em-3.4.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,492 Found link https://files.pythonhosted.org/packages/0c/55/88dbe7de08ea9c4b00d843e2a03c0d6dcad4cb6a6f74d4a666ce9ed8e5d9/scipion-em-3.5.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.5.0 2026-03-20T14:00:51,493 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/41/79/0d1a2dcff9c1f47d0cccba4d10d7fd707b6c82642ff5dcd25999ff4fa5f8/scipion_em-3.5.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,494 Found link https://files.pythonhosted.org/packages/51/aa/e575e15f75780bbe8cbf79c77ef7033a3a4dd3f723612c59053f7fd9de9a/scipion-em-3.5.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.5.1 2026-03-20T14:00:51,494 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/99/9f/b3daae01514eea697883619d583b4c96638b63730a08c1dbbe377a233c0d/scipion_em-3.5.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,495 Found link https://files.pythonhosted.org/packages/fd/8b/e5f9cb09535e1dc44d87abb373d733d0d642eb696c56c248ba4008425dd4/scipion-em-3.6.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.6.0 2026-03-20T14:00:51,497 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/a0/fb/e57d5011ab45d740763e36f474a10699f8896184c035d203111f4804bd63/scipion_em-3.6.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,497 Found link https://files.pythonhosted.org/packages/b0/e2/603acc1c4ea45a99d8788ef2b272bfffe54b87398a1a133394f4ec9b1484/scipion-em-3.7.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.7.0 2026-03-20T14:00:51,498 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/eb/05/075d6cd0a01c511dd4cc56666555aeda38cb6a3b74fa891fc79cc6fa920a/scipion_em-3.7.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,499 Found link https://files.pythonhosted.org/packages/62/74/34d6c9055b9afb2131e1ebc2513e1cb421e0c3b37ac277180dc5fb1d6149/scipion-em-3.7.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.7.1 2026-03-20T14:00:51,500 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/f8/59/ceed8486c5e05eec715e98ca00d5c7adf4c8625ae9d1ba77e2350147a54a/scipion_em-3.7.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,500 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/8b/8f/2a7309cd6189851b8fc9ec01c105f3769a62f8c99478bc763f7a1f333c1c/scipion_em-3.8.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,501 Found link https://files.pythonhosted.org/packages/f3/2c/83d00c158623f1af122a6bec334d4ca9012c7d5042e56188bd00f73fb38d/scipion_em-3.8.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.8.0 2026-03-20T14:00:51,502 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/f6/ae/d4f961cdd153d267e848d111f9f5aa434abd96857d0a1db2f23bbbaa7b1e/scipion_em-3.9.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,503 Found link https://files.pythonhosted.org/packages/f9/3f/21b0f416f02a31a10bd81ecc4012be33f364555205e76bcee12f892a0ef3/scipion_em-3.9.0.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.0 2026-03-20T14:00:51,504 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/ac/3a/624947daf90e09fe043495c2cd145142bc21788b724dfc602a019aed11ac/scipion_em-3.9.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,505 Found link https://files.pythonhosted.org/packages/aa/2e/79c21f1eee6705a85c08d36a030e61f70d385d00abe77837e3e35b07d404/scipion_em-3.9.1.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.1 2026-03-20T14:00:51,505 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/cd/2f/fd630b28690a863439913a93893ed9ed1363c4ec419bcbbf334c3ef2f6b1/scipion_em-3.9.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,506 Found link https://files.pythonhosted.org/packages/5e/a3/6d5050edbe42108295bd28418380a62426a577730b67b609461468606698/scipion_em-3.9.2.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.2 2026-03-20T14:00:51,507 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/45/43/809e2080e90755fb2d424a6d4726c3ef1d9a60e1db3dd7c31a8c5ac61c37/scipion_em-3.9.3-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,507 Found link https://files.pythonhosted.org/packages/3a/35/56d126e787e41439f60815865133fe8a5bfffe8b93859554a4275abec3ea/scipion_em-3.9.3.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.3 2026-03-20T14:00:51,508 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/5d/2d/83049d1835043308e83c4a920d14704b01ddba72aa61c07459ecb8872387/scipion_em-3.9.4-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) 2026-03-20T14:00:51,509 Found link https://files.pythonhosted.org/packages/c3/f1/fa939edbddcbd90303c78491c496312dac19aaaac8526bee262df47aca59/scipion_em-3.9.4.tar.gz (from https://pypi.org/simple/scipion-em/), version: 3.9.4 2026-03-20T14:00:51,510 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/1c/5f/4d76d029a0cffc5e6c85c8962220d0700167246952eb6bf857fe9efd6dc8/scipion_em-3.10.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,511 Found link https://files.pythonhosted.org/packages/70/5d/2c37b89fa652eadeff75443e6c7b0ff5817ab021c9d77885d79ab605039d/scipion_em-3.10.0.tar.gz (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8), version: 3.10.0 2026-03-20T14:00:51,511 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/b7/70/794882e854bd59f8208110f4b63b6130a5446fa48834a95144750a0fb402/scipion_em-3.10.1-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,512 Found link https://files.pythonhosted.org/packages/38/1b/d8741018635a9c470f874d1cf26119fc01e5bd23753817101cfa0e5b916d/scipion_em-3.10.1.tar.gz (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8), version: 3.10.1 2026-03-20T14:00:51,513 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/54/aa/667d9fb4d264a6d093f43812e896c0c06c987f13c3e2532c418960cddf74/scipion_em-3.10.2-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,514 Found link https://files.pythonhosted.org/packages/ae/80/46216852798c82e533e0aa552f8f209c8462e9e7f394bf278fb4438793cd/scipion_em-3.10.2.tar.gz (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8), version: 3.10.2 2026-03-20T14:00:51,514 Skipping link: No binaries permitted for scipion-em: https://files.pythonhosted.org/packages/19/93/32df855797b674fcadd0c1091b87f55de09c7968096f4370dc915864aa1c/scipion_em-3.11.0-py3-none-any.whl (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,515 Found link https://files.pythonhosted.org/packages/02/c1/6ef43e229289ffed48e3a4a7f0f00d4fe69c179bcebab58737bd84eb043f/scipion_em-3.11.0.tar.gz (from https://pypi.org/simple/scipion-em/) (requires-python:>=3.8), version: 3.11.0 2026-03-20T14:00:51,516 Fetching project page and analyzing links: https://www.piwheels.org/simple/scipion-em/ 2026-03-20T14:00:51,517 Getting page https://www.piwheels.org/simple/scipion-em/ 2026-03-20T14:00:51,519 Found index url https://www.piwheels.org/simple 2026-03-20T14:00:51,681 Fetched page https://www.piwheels.org/simple/scipion-em/ as text/html 2026-03-20T14:00:51,686 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.10.2-py3-none-any.whl#sha256=8cd54acd60e3996a25cc385b1e241940f41b4c3377f8f5589c1cd65170c925b9 (from https://www.piwheels.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,687 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.10.1-py3-none-any.whl#sha256=223754b8752097633cd92345a9d3c4459c804f65baf84dcb91a8a1a631882c03 (from https://www.piwheels.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,688 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.10.0-py3-none-any.whl#sha256=394ce6eaf061f9dca3f23907c5e33a4afa18cf919d733b9b5c349c34b25433f9 (from https://www.piwheels.org/simple/scipion-em/) (requires-python:>=3.8) 2026-03-20T14:00:51,688 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.11-py3-none-any.whl#sha256=6dba7f06dfd480b2d5c0d73c2bd38b030b4dd2ebdd5d1e828e5d5b45ff9ac1a5 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,689 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.10-py3-none-any.whl#sha256=3d2e12bff2d02efafea39134332ee14ea6a9a8cf8456d92f9dd9e028f26cb0cb (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,690 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.9-py3-none-any.whl#sha256=82d7ef382aab6f2a02e7364b0166d1afbf120f2037a3d931d24b4015b131e51c (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,690 Skipping link: No binaries permitted for scipion-em: 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(from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,692 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.4-py3-none-any.whl#sha256=2f3d0bfd73f32175b7a33f6dfc039f9eaf7aa81d168f2642538bd82c1226e166 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,693 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.3-py3-none-any.whl#sha256=fefa046d776b3eb482dd9bd020f47b7f7a0c96eb90f7e89e9fdc673b09d029f4 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,693 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.2-py3-none-any.whl#sha256=14157d1bc18928ce573c12cb93229c6a16ed58726d917991d954aa7d6c98999b (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,694 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1-py3-none-any.whl#sha256=e40c5d5be04bc8cb1d42d843875a91b4d0ce022a0d5f308d150ad0838f8efc04 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,694 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1b3-py3-none-any.whl#sha256=a24bdcd5ea84f110d892a981194ad78765872e4e0e604dfed64206ab7701db36 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,695 Skipping link: No binaries permitted for scipion-em: https://archive1.piwheels.org/simple/scipion-em/scipion_em-3.0.1a1-py3-none-any.whl#sha256=84b1168cd792aed6a3bf1cf2a9ea9e480292d69aa1d8d0e8e99b0b367ed15695 (from https://www.piwheels.org/simple/scipion-em/) 2026-03-20T14:00:51,696 Skipping link: not a file: https://www.piwheels.org/simple/scipion-em/ 2026-03-20T14:00:51,696 Skipping link: not a file: https://pypi.org/simple/scipion-em/ 2026-03-20T14:00:51,722 Given no hashes to check 1 links for project 'scipion-em': discarding no candidates 2026-03-20T14:00:51,742 Collecting scipion-em==3.11.0 2026-03-20T14:00:51,744 Created temporary directory: /tmp/pip-unpack-zwob7_14 2026-03-20T14:00:51,964 Downloading scipion_em-3.11.0.tar.gz (1.5 MB) 2026-03-20T14:00:52,888 Added scipion-em==3.11.0 from https://files.pythonhosted.org/packages/02/c1/6ef43e229289ffed48e3a4a7f0f00d4fe69c179bcebab58737bd84eb043f/scipion_em-3.11.0.tar.gz to build tracker '/tmp/pip-build-tracker-697xtf4e' 2026-03-20T14:00:52,893 Created temporary directory: /tmp/pip-build-env-umcgvjwy 2026-03-20T14:00:52,898 Installing build dependencies: started 2026-03-20T14:00:52,899 Running command pip subprocess to install build dependencies 2026-03-20T14:00:54,029 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-20T14:00:54,597 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-20T14:00:54,621 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-20T14:00:56,401 Collecting setuptools>=42 2026-03-20T14:00:56,477 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-20T14:00:56,743 Collecting wheel 2026-03-20T14:00:56,758 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-20T14:00:56,941 Collecting packaging>=24.0 2026-03-20T14:00:56,958 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-20T14:00:59,933 Installing collected packages: setuptools, packaging, wheel 2026-03-20T14:01:03,222 Creating /tmp/pip-build-env-umcgvjwy/overlay/local/bin 2026-03-20T14:01:03,224 changing mode of /tmp/pip-build-env-umcgvjwy/overlay/local/bin/wheel to 755 2026-03-20T14:01:03,244 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-20T14:01:03,542 Installing build dependencies: finished with status 'done' 2026-03-20T14:01:03,550 Getting requirements to build wheel: started 2026-03-20T14:01:03,552 Running command Getting requirements to build wheel 2026-03-20T14:01:04,212 /tmp/pip-build-env-umcgvjwy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-20T14:01:04,212 !! 2026-03-20T14:01:04,214 ******************************************************************************** 2026-03-20T14:01:04,214 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-20T14:01:04,216 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-20T14:01:04,216 or your builds will no longer be supported. 2026-03-20T14:01:04,218 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:01:04,218 ******************************************************************************** 2026-03-20T14:01:04,219 !! 2026-03-20T14:01:04,220 corresp(dist, value, root_dir) 2026-03-20T14:01:04,301 running egg_info 2026-03-20T14:01:04,308 writing scipion_em.egg-info/PKG-INFO 2026-03-20T14:01:04,311 writing dependency_links to scipion_em.egg-info/dependency_links.txt 2026-03-20T14:01:04,313 writing entry points to scipion_em.egg-info/entry_points.txt 2026-03-20T14:01:04,318 writing requirements to scipion_em.egg-info/requires.txt 2026-03-20T14:01:04,319 writing top-level names to scipion_em.egg-info/top_level.txt 2026-03-20T14:01:04,413 reading manifest file 'scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:04,423 reading manifest template 'MANIFEST.in' 2026-03-20T14:01:04,426 adding license file 'LICENSE' 2026-03-20T14:01:04,435 writing manifest file 'scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:04,534 Getting requirements to build wheel: finished with status 'done' 2026-03-20T14:01:04,537 Created temporary directory: /tmp/pip-modern-metadata-5ws4vbh4 2026-03-20T14:01:04,540 Preparing metadata (pyproject.toml): started 2026-03-20T14:01:04,541 Running command Preparing metadata (pyproject.toml) 2026-03-20T14:01:05,109 /tmp/pip-build-env-umcgvjwy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-20T14:01:05,110 !! 2026-03-20T14:01:05,111 ******************************************************************************** 2026-03-20T14:01:05,111 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-20T14:01:05,112 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-20T14:01:05,113 or your builds will no longer be supported. 2026-03-20T14:01:05,113 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:01:05,114 ******************************************************************************** 2026-03-20T14:01:05,115 !! 2026-03-20T14:01:05,115 corresp(dist, value, root_dir) 2026-03-20T14:01:05,194 running dist_info 2026-03-20T14:01:05,204 creating /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info 2026-03-20T14:01:05,205 writing /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/PKG-INFO 2026-03-20T14:01:05,208 writing dependency_links to /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/dependency_links.txt 2026-03-20T14:01:05,210 writing entry points to /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/entry_points.txt 2026-03-20T14:01:05,214 writing requirements to /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/requires.txt 2026-03-20T14:01:05,215 writing top-level names to /tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/top_level.txt 2026-03-20T14:01:05,216 writing manifest file '/tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:05,253 reading manifest file '/tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:05,255 reading manifest template 'MANIFEST.in' 2026-03-20T14:01:05,257 adding license file 'LICENSE' 2026-03-20T14:01:05,264 writing manifest file '/tmp/pip-modern-metadata-5ws4vbh4/scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:05,266 creating '/tmp/pip-modern-metadata-5ws4vbh4/scipion_em-3.11.0.dist-info' 2026-03-20T14:01:05,391 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-20T14:01:05,395 Source in /tmp/pip-wheel-duuzl77p/scipion-em_ed2ed107a2594d89abf241bffda25397 has version 3.11.0, which satisfies requirement scipion-em==3.11.0 from https://files.pythonhosted.org/packages/02/c1/6ef43e229289ffed48e3a4a7f0f00d4fe69c179bcebab58737bd84eb043f/scipion_em-3.11.0.tar.gz 2026-03-20T14:01:05,396 Removed scipion-em==3.11.0 from https://files.pythonhosted.org/packages/02/c1/6ef43e229289ffed48e3a4a7f0f00d4fe69c179bcebab58737bd84eb043f/scipion_em-3.11.0.tar.gz from build tracker '/tmp/pip-build-tracker-697xtf4e' 2026-03-20T14:01:05,402 Created temporary directory: /tmp/pip-unpack-r2lu4yec 2026-03-20T14:01:05,403 Building wheels for collected packages: scipion-em 2026-03-20T14:01:05,407 Created temporary directory: /tmp/pip-wheel-en7fup7_ 2026-03-20T14:01:05,407 Destination directory: /tmp/pip-wheel-en7fup7_ 2026-03-20T14:01:05,409 Building wheel for scipion-em (pyproject.toml): started 2026-03-20T14:01:05,411 Running command Building wheel for scipion-em (pyproject.toml) 2026-03-20T14:01:05,975 /tmp/pip-build-env-umcgvjwy/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-20T14:01:05,975 !! 2026-03-20T14:01:05,976 ******************************************************************************** 2026-03-20T14:01:05,977 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-20T14:01:05,979 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-20T14:01:05,979 or your builds will no longer be supported. 2026-03-20T14:01:05,980 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:01:05,980 ******************************************************************************** 2026-03-20T14:01:05,981 !! 2026-03-20T14:01:05,982 corresp(dist, value, root_dir) 2026-03-20T14:01:06,051 running bdist_wheel 2026-03-20T14:01:06,068 running build 2026-03-20T14:01:06,069 running build_py 2026-03-20T14:01:06,075 creating build/lib/pwem 2026-03-20T14:01:06,077 copying pwem/utils.py -> build/lib/pwem 2026-03-20T14:01:06,079 copying pwem/bibtex.py -> build/lib/pwem 2026-03-20T14:01:06,081 copying pwem/__init__.py -> build/lib/pwem 2026-03-20T14:01:06,083 copying pwem/constants.py -> build/lib/pwem 2026-03-20T14:01:06,086 creating build/lib/pwem/cmd 2026-03-20T14:01:06,087 copying pwem/cmd/convert.py -> build/lib/pwem/cmd 2026-03-20T14:01:06,089 copying pwem/cmd/chimera_client.py -> build/lib/pwem/cmd 2026-03-20T14:01:06,090 copying pwem/cmd/program.py -> build/lib/pwem/cmd 2026-03-20T14:01:06,093 creating build/lib/pwem/convert 2026-03-20T14:01:06,094 copying pwem/convert/symmetry.py -> build/lib/pwem/convert 2026-03-20T14:01:06,097 copying pwem/convert/pdb_list.py -> build/lib/pwem/convert 2026-03-20T14:01:06,099 copying pwem/convert/utils.py -> build/lib/pwem/convert 2026-03-20T14:01:06,102 copying pwem/convert/transformations.py -> build/lib/pwem/convert 2026-03-20T14:01:06,105 copying pwem/convert/headers.py -> build/lib/pwem/convert 2026-03-20T14:01:06,107 copying pwem/convert/trigonometry.py -> build/lib/pwem/convert 2026-03-20T14:01:06,110 copying pwem/convert/__init__.py -> build/lib/pwem/convert 2026-03-20T14:01:06,111 copying pwem/convert/atom_struct.py -> build/lib/pwem/convert 2026-03-20T14:01:06,114 copying pwem/convert/sequence.py -> build/lib/pwem/convert 2026-03-20T14:01:06,117 creating build/lib/pwem/tests 2026-03-20T14:01:06,118 copying pwem/tests/utils.py -> build/lib/pwem/tests 2026-03-20T14:01:06,120 copying pwem/tests/__init__.py -> build/lib/pwem/tests 2026-03-20T14:01:06,123 creating build/lib/pwem/wizards 2026-03-20T14:01:06,124 copying pwem/wizards/wizard.py -> build/lib/pwem/wizards 2026-03-20T14:01:06,127 copying pwem/wizards/wizards.py -> build/lib/pwem/wizards 2026-03-20T14:01:06,130 copying pwem/wizards/__init__.py -> build/lib/pwem/wizards 2026-03-20T14:01:06,132 creating build/lib/pwem/emlib 2026-03-20T14:01:06,133 copying pwem/emlib/__init__.py -> build/lib/pwem/emlib 2026-03-20T14:01:06,135 copying pwem/emlib/lib.py -> build/lib/pwem/emlib 2026-03-20T14:01:06,137 copying pwem/emlib/_libNone.py -> build/lib/pwem/emlib 2026-03-20T14:01:06,140 creating build/lib/pwem/viewers 2026-03-20T14:01:06,141 copying pwem/viewers/viewer_volumes.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,144 copying pwem/viewers/views.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,146 copying pwem/viewers/viewer_localres.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,149 copying pwem/viewers/plotter.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,151 copying pwem/viewers/filehandlers.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,153 copying pwem/viewers/viewer_vmd.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,155 copying pwem/viewers/viewer_coordinates.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,158 copying pwem/viewers/viewer_fsc.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,161 copying pwem/viewers/viewer_angular_dist.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,162 copying pwem/viewers/viewer_base.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,165 copying pwem/viewers/viewers_protocols.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,167 copying pwem/viewers/__init__.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,168 copying pwem/viewers/showj.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,171 copying pwem/viewers/viewer_sequence.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,172 copying pwem/viewers/viewers_data.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,175 copying pwem/viewers/viewer_pdf.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,176 copying pwem/viewers/viewer_chimera.py -> build/lib/pwem/viewers 2026-03-20T14:01:06,179 creating build/lib/pwem/objects 2026-03-20T14:01:06,180 copying pwem/objects/__init__.py -> build/lib/pwem/objects 2026-03-20T14:01:06,182 copying pwem/objects/data_tiltpairs.py -> build/lib/pwem/objects 2026-03-20T14:01:06,184 copying pwem/objects/data_flexhub.py -> build/lib/pwem/objects 2026-03-20T14:01:06,187 copying pwem/objects/data.py -> build/lib/pwem/objects 2026-03-20T14:01:06,192 creating build/lib/pwem/protocols 2026-03-20T14:01:06,193 copying pwem/protocols/protocol_tests.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,195 copying pwem/protocols/parallel.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,197 copying pwem/protocols/protocol_projection_edit.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,200 copying pwem/protocols/protocol_movies.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,203 copying pwem/protocols/protocol_classes_selector.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,205 copying pwem/protocols/protocol_crop_resize_vols.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,207 copying pwem/protocols/protocol_pdf_report.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,210 copying pwem/protocols/protocol_particles.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,212 copying pwem/protocols/protocol_micrographs.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,215 copying pwem/protocols/protocol_wait.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,217 copying pwem/protocols/protocol_sets.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,220 copying pwem/protocols/protocol_base_flexhub.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,222 copying pwem/protocols/protocol_particles_picking.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,224 copying pwem/protocols/protocol_filter_by_normal.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,227 copying pwem/protocols/protocol_2d.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,229 copying pwem/protocols/protocol.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,231 copying pwem/protocols/protocol_extract_coordinates.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,234 copying pwem/protocols/protocol_set_editor.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,236 copying pwem/protocols/protocol_ctf_assign.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,238 copying pwem/protocols/__init__.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,240 copying pwem/protocols/protocol_set_filter.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,243 copying pwem/protocols/protocol_tools.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,245 copying pwem/protocols/protocol_movie_eraser.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,247 copying pwem/protocols/protocol_boxsize_checkpoint.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,250 copying pwem/protocols/protocol_3d.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,252 copying pwem/protocols/protocol_alignment_assign.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,254 copying pwem/protocols/protocol_boxsize_parameters.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,256 copying pwem/protocols/protocol_align_movies.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,259 copying pwem/protocols/protocol_origin_sampling_volume.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,262 copying pwem/protocols/protocol_batch.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,264 copying pwem/protocols/protocol_break_symmetry.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,266 copying pwem/protocols/protocol_create_stream_data.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,269 copying pwem/protocols/protocol_tiltpairs.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,271 copying pwem/protocols/protocol_alignment_invertHand.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,273 copying pwem/protocols/protocol_mathematical_operator.py -> build/lib/pwem/protocols 2026-03-20T14:01:06,276 creating build/lib/pwem/tests/workflows 2026-03-20T14:01:06,277 copying pwem/tests/workflows/test_workflow_initialvolume.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,280 copying pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,282 copying pwem/tests/workflows/test_workflow_mixed_large.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,284 copying pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,286 copying pwem/tests/workflows/__init__.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,288 copying pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,290 copying pwem/tests/workflows/test_workflow_xmipp.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,292 copying pwem/tests/workflows/test_workflow.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,294 copying pwem/tests/workflows/test_parallel_gpu_queue.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,297 copying pwem/tests/workflows/test_workflow_mixed.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,299 copying pwem/tests/workflows/test_workflow_modeling.py -> build/lib/pwem/tests/workflows 2026-03-20T14:01:06,305 creating build/lib/pwem/tests/protocols 2026-03-20T14:01:06,306 copying pwem/tests/protocols/test_protocols_sets.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,308 copying pwem/tests/protocols/test_protocol_movie_eraser.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,311 copying pwem/tests/protocols/test_notifier.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,313 copying pwem/tests/protocols/test_protocols_import_atomstruct.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,315 copying pwem/tests/protocols/test_projection_edit.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,318 copying pwem/tests/protocols/test_protocols_import_masks.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,320 copying pwem/tests/protocols/test_protocol_extract_coorinates.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,322 copying pwem/tests/protocols/test_protocols_import_sequence.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,324 copying pwem/tests/protocols/test_protocols_import_ctfs.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,327 copying pwem/tests/protocols/test_protocols_assign_orig.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,329 copying pwem/tests/protocols/test_protocols_import_particles.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,331 copying pwem/tests/protocols/test_angular_distribution.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,334 copying pwem/tests/protocols/test_protocol_alignment_assign.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,336 copying pwem/tests/protocols/test_protocol_mathematical_operator.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,338 copying pwem/tests/protocols/test_protocols_set_filter.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,341 copying pwem/tests/protocols/test_extract_particles.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,343 copying pwem/tests/protocols/test_protocols_import_coords.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,346 copying pwem/tests/protocols/test_protocols_set_editor.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,348 copying pwem/tests/protocols/test_protocol_invert_Hand.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,350 copying pwem/tests/protocols/test_protocols_import_volumes.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,353 copying pwem/tests/protocols/test_protocol_wait.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,354 copying pwem/tests/protocols/test_protocols_import_micrographs.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,357 copying pwem/tests/protocols/__init__.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,358 copying pwem/tests/protocols/test_protocol_boxsize_checkpoint.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,360 copying pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,362 copying pwem/tests/protocols/test_protocols_import_movies.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,364 copying pwem/tests/protocols/test_plugin.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,366 copying pwem/tests/protocols/test_protocols_crop_resize_vols.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,368 copying pwem/tests/protocols/test_protocol_export2DB.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,371 copying pwem/tests/protocols/test_protocol_boxsize_parameters.py -> build/lib/pwem/tests/protocols 2026-03-20T14:01:06,373 creating build/lib/pwem/tests/data 2026-03-20T14:01:06,374 copying pwem/tests/data/hexonAtomStruct.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,451 copying pwem/tests/data/test_convert_atom_struct.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,454 copying pwem/tests/data/test_data.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,457 copying pwem/tests/data/__init__.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,458 copying pwem/tests/data/test_symmetry.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,462 copying pwem/tests/data/test_metadata.py -> build/lib/pwem/tests/data 2026-03-20T14:01:06,464 creating build/lib/pwem/wizards/wizards_3d 2026-03-20T14:01:06,465 copying pwem/wizards/wizards_3d/callbacks.py -> build/lib/pwem/wizards/wizards_3d 2026-03-20T14:01:06,468 copying pwem/wizards/wizards_3d/mask_volume_wizard.py -> build/lib/pwem/wizards/wizards_3d 2026-03-20T14:01:06,470 copying pwem/wizards/wizards_3d/__init__.py -> build/lib/pwem/wizards/wizards_3d 2026-03-20T14:01:06,472 copying pwem/wizards/wizards_3d/mask_structure_wizard.py -> build/lib/pwem/wizards/wizards_3d 2026-03-20T14:01:06,475 creating build/lib/pwem/emlib/metadata 2026-03-20T14:01:06,476 copying pwem/emlib/metadata/utils.py -> build/lib/pwem/emlib/metadata 2026-03-20T14:01:06,479 copying pwem/emlib/metadata/__init__.py -> build/lib/pwem/emlib/metadata 2026-03-20T14:01:06,481 creating build/lib/pwem/emlib/image 2026-03-20T14:01:06,482 copying pwem/emlib/image/image_handler.py -> build/lib/pwem/emlib/image 2026-03-20T14:01:06,485 copying pwem/emlib/image/__init__.py -> build/lib/pwem/emlib/image 2026-03-20T14:01:06,487 copying pwem/emlib/image/image_readers.py -> build/lib/pwem/emlib/image 2026-03-20T14:01:06,490 creating build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,491 copying pwem/viewers/mdviewer/volumeViewer.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,494 copying pwem/viewers/mdviewer/viewer.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,496 copying pwem/viewers/mdviewer/readers.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,498 copying pwem/viewers/mdviewer/sqlite_dao.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,501 copying pwem/viewers/mdviewer/__init__.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,503 copying pwem/viewers/mdviewer/star_dao.py -> build/lib/pwem/viewers/mdviewer 2026-03-20T14:01:06,506 creating build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,507 copying pwem/protocols/protocol_import/dataimport.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,510 copying pwem/protocols/protocol_import/images.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,512 copying pwem/protocols/protocol_import/ctfs.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,515 copying pwem/protocols/protocol_import/micrographs.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,517 copying pwem/protocols/protocol_import/volumes.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,520 copying pwem/protocols/protocol_import/masks.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,522 copying pwem/protocols/protocol_import/base.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,524 copying pwem/protocols/protocol_import/particles.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,527 copying pwem/protocols/protocol_import/__init__.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,529 copying pwem/protocols/protocol_import/coordinates.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,532 copying pwem/protocols/protocol_import/sequence.py -> build/lib/pwem/protocols/protocol_import 2026-03-20T14:01:06,534 creating build/lib/pwem/protocols/protocol_export 2026-03-20T14:01:06,535 copying pwem/protocols/protocol_export/protocol_export_DB.py -> build/lib/pwem/protocols/protocol_export 2026-03-20T14:01:06,538 copying pwem/protocols/protocol_export/__init__.py -> build/lib/pwem/protocols/protocol_export 2026-03-20T14:01:06,540 running egg_info 2026-03-20T14:01:06,549 writing scipion_em.egg-info/PKG-INFO 2026-03-20T14:01:06,552 writing dependency_links to scipion_em.egg-info/dependency_links.txt 2026-03-20T14:01:06,554 writing entry points to scipion_em.egg-info/entry_points.txt 2026-03-20T14:01:06,558 writing requirements to scipion_em.egg-info/requires.txt 2026-03-20T14:01:06,559 writing top-level names to scipion_em.egg-info/top_level.txt 2026-03-20T14:01:06,588 reading manifest file 'scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:06,598 reading manifest template 'MANIFEST.in' 2026-03-20T14:01:06,600 adding license file 'LICENSE' 2026-03-20T14:01:06,609 writing manifest file 'scipion_em.egg-info/SOURCES.txt' 2026-03-20T14:01:06,623 copying pwem/protocols.conf -> build/lib/pwem 2026-03-20T14:01:06,625 copying pwem/scipion_icon.png -> build/lib/pwem 2026-03-20T14:01:06,628 creating build/lib/pwem/templates 2026-03-20T14:01:06,629 copying pwem/templates/demo.json.template -> build/lib/pwem/templates 2026-03-20T14:01:06,652 installing to build/bdist.linux-armv7l/wheel 2026-03-20T14:01:06,653 running install 2026-03-20T14:01:06,677 running install_lib 2026-03-20T14:01:06,682 creating build/bdist.linux-armv7l/wheel 2026-03-20T14:01:06,685 creating build/bdist.linux-armv7l/wheel/pwem 2026-03-20T14:01:06,686 creating build/bdist.linux-armv7l/wheel/pwem/cmd 2026-03-20T14:01:06,688 copying build/lib/pwem/cmd/convert.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2026-03-20T14:01:06,690 copying build/lib/pwem/cmd/chimera_client.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2026-03-20T14:01:06,692 copying build/lib/pwem/cmd/program.py -> build/bdist.linux-armv7l/wheel/./pwem/cmd 2026-03-20T14:01:06,693 copying build/lib/pwem/utils.py -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:06,697 creating build/bdist.linux-armv7l/wheel/pwem/convert 2026-03-20T14:01:06,698 copying build/lib/pwem/convert/symmetry.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,702 copying build/lib/pwem/convert/pdb_list.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,706 copying build/lib/pwem/convert/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,708 copying build/lib/pwem/convert/transformations.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,712 copying build/lib/pwem/convert/headers.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,714 copying build/lib/pwem/convert/trigonometry.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,716 copying build/lib/pwem/convert/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,718 copying build/lib/pwem/convert/atom_struct.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,722 copying build/lib/pwem/convert/sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/convert 2026-03-20T14:01:06,725 creating build/bdist.linux-armv7l/wheel/pwem/tests 2026-03-20T14:01:06,726 copying build/lib/pwem/tests/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/tests 2026-03-20T14:01:06,729 creating build/bdist.linux-armv7l/wheel/pwem/tests/workflows 2026-03-20T14:01:06,730 copying build/lib/pwem/tests/workflows/test_workflow_initialvolume.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,733 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,735 copying build/lib/pwem/tests/workflows/test_workflow_mixed_large.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,737 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_rct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,739 copying build/lib/pwem/tests/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,741 copying build/lib/pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,744 copying build/lib/pwem/tests/workflows/test_workflow_xmipp.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,746 copying build/lib/pwem/tests/workflows/test_workflow.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,748 copying build/lib/pwem/tests/workflows/test_parallel_gpu_queue.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,751 copying build/lib/pwem/tests/workflows/test_workflow_mixed.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,753 copying build/lib/pwem/tests/workflows/test_workflow_modeling.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/workflows 2026-03-20T14:01:06,758 copying build/lib/pwem/tests/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests 2026-03-20T14:01:06,761 creating build/bdist.linux-armv7l/wheel/pwem/tests/protocols 2026-03-20T14:01:06,762 copying build/lib/pwem/tests/protocols/test_protocols_sets.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,765 copying build/lib/pwem/tests/protocols/test_protocol_movie_eraser.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,767 copying build/lib/pwem/tests/protocols/test_notifier.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,769 copying build/lib/pwem/tests/protocols/test_protocols_import_atomstruct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,771 copying build/lib/pwem/tests/protocols/test_projection_edit.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,774 copying build/lib/pwem/tests/protocols/test_protocols_import_masks.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,776 copying build/lib/pwem/tests/protocols/test_protocol_extract_coorinates.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,778 copying build/lib/pwem/tests/protocols/test_protocols_import_sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,781 copying build/lib/pwem/tests/protocols/test_protocols_import_ctfs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,783 copying build/lib/pwem/tests/protocols/test_protocols_assign_orig.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,785 copying build/lib/pwem/tests/protocols/test_protocols_import_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,788 copying build/lib/pwem/tests/protocols/test_angular_distribution.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,790 copying build/lib/pwem/tests/protocols/test_protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,793 copying build/lib/pwem/tests/protocols/test_protocol_mathematical_operator.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,795 copying build/lib/pwem/tests/protocols/test_protocols_set_filter.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,797 copying build/lib/pwem/tests/protocols/test_extract_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,799 copying build/lib/pwem/tests/protocols/test_protocols_import_coords.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,802 copying build/lib/pwem/tests/protocols/test_protocols_set_editor.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,804 copying build/lib/pwem/tests/protocols/test_protocol_invert_Hand.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,807 copying build/lib/pwem/tests/protocols/test_protocols_import_volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,809 copying build/lib/pwem/tests/protocols/test_protocol_wait.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,811 copying build/lib/pwem/tests/protocols/test_protocols_import_micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,814 copying build/lib/pwem/tests/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,815 copying build/lib/pwem/tests/protocols/test_protocol_boxsize_checkpoint.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,817 copying build/lib/pwem/tests/protocols/test_protocol_volume_homogenizer.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,820 copying build/lib/pwem/tests/protocols/test_protocols_import_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,822 copying build/lib/pwem/tests/protocols/test_plugin.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,824 copying build/lib/pwem/tests/protocols/test_protocols_crop_resize_vols.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,826 copying build/lib/pwem/tests/protocols/test_protocol_export2DB.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,829 copying build/lib/pwem/tests/protocols/test_protocol_boxsize_parameters.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/protocols 2026-03-20T14:01:06,832 creating build/bdist.linux-armv7l/wheel/pwem/tests/data 2026-03-20T14:01:06,833 copying build/lib/pwem/tests/data/hexonAtomStruct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,903 copying build/lib/pwem/tests/data/test_convert_atom_struct.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,906 copying build/lib/pwem/tests/data/test_data.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,909 copying build/lib/pwem/tests/data/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,911 copying build/lib/pwem/tests/data/test_symmetry.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,914 copying build/lib/pwem/tests/data/test_metadata.py -> build/bdist.linux-armv7l/wheel/./pwem/tests/data 2026-03-20T14:01:06,916 copying build/lib/pwem/bibtex.py -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:06,919 creating build/bdist.linux-armv7l/wheel/pwem/wizards 2026-03-20T14:01:06,920 copying build/lib/pwem/wizards/wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2026-03-20T14:01:06,924 creating build/bdist.linux-armv7l/wheel/pwem/wizards/wizards_3d 2026-03-20T14:01:06,925 copying build/lib/pwem/wizards/wizards_3d/callbacks.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2026-03-20T14:01:06,927 copying build/lib/pwem/wizards/wizards_3d/mask_volume_wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2026-03-20T14:01:06,930 copying build/lib/pwem/wizards/wizards_3d/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2026-03-20T14:01:06,932 copying build/lib/pwem/wizards/wizards_3d/mask_structure_wizard.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards/wizards_3d 2026-03-20T14:01:06,934 copying build/lib/pwem/wizards/wizards.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2026-03-20T14:01:06,937 copying build/lib/pwem/wizards/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/wizards 2026-03-20T14:01:06,939 creating build/bdist.linux-armv7l/wheel/pwem/emlib 2026-03-20T14:01:06,941 creating build/bdist.linux-armv7l/wheel/pwem/emlib/metadata 2026-03-20T14:01:06,942 copying build/lib/pwem/emlib/metadata/utils.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/metadata 2026-03-20T14:01:06,944 copying build/lib/pwem/emlib/metadata/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/metadata 2026-03-20T14:01:06,947 creating build/bdist.linux-armv7l/wheel/pwem/emlib/image 2026-03-20T14:01:06,948 copying build/lib/pwem/emlib/image/image_handler.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2026-03-20T14:01:06,950 copying build/lib/pwem/emlib/image/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2026-03-20T14:01:06,952 copying build/lib/pwem/emlib/image/image_readers.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib/image 2026-03-20T14:01:06,955 copying build/lib/pwem/emlib/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2026-03-20T14:01:06,957 copying build/lib/pwem/emlib/lib.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2026-03-20T14:01:06,959 copying build/lib/pwem/emlib/_libNone.py -> build/bdist.linux-armv7l/wheel/./pwem/emlib 2026-03-20T14:01:06,963 creating build/bdist.linux-armv7l/wheel/pwem/viewers 2026-03-20T14:01:06,964 copying build/lib/pwem/viewers/viewer_volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,966 copying build/lib/pwem/viewers/views.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,969 copying build/lib/pwem/viewers/viewer_localres.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,971 copying build/lib/pwem/viewers/plotter.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,974 copying build/lib/pwem/viewers/filehandlers.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,976 copying build/lib/pwem/viewers/viewer_vmd.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,978 copying build/lib/pwem/viewers/viewer_coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,982 copying build/lib/pwem/viewers/viewer_fsc.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,984 copying build/lib/pwem/viewers/viewer_angular_dist.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,986 copying build/lib/pwem/viewers/viewer_base.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,989 copying build/lib/pwem/viewers/viewers_protocols.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,991 copying build/lib/pwem/viewers/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,993 copying build/lib/pwem/viewers/showj.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,995 copying build/lib/pwem/viewers/viewer_sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:06,997 copying build/lib/pwem/viewers/viewers_data.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:07,000 copying build/lib/pwem/viewers/viewer_pdf.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:07,002 creating build/bdist.linux-armv7l/wheel/pwem/viewers/mdviewer 2026-03-20T14:01:07,004 copying build/lib/pwem/viewers/mdviewer/volumeViewer.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,006 copying build/lib/pwem/viewers/mdviewer/viewer.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,008 copying build/lib/pwem/viewers/mdviewer/readers.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,010 copying build/lib/pwem/viewers/mdviewer/sqlite_dao.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,013 copying build/lib/pwem/viewers/mdviewer/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,015 copying build/lib/pwem/viewers/mdviewer/star_dao.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers/mdviewer 2026-03-20T14:01:07,017 copying build/lib/pwem/viewers/viewer_chimera.py -> build/bdist.linux-armv7l/wheel/./pwem/viewers 2026-03-20T14:01:07,020 copying build/lib/pwem/protocols.conf -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:07,022 copying build/lib/pwem/scipion_icon.png -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:07,024 copying build/lib/pwem/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:07,027 copying build/lib/pwem/constants.py -> build/bdist.linux-armv7l/wheel/./pwem 2026-03-20T14:01:07,030 creating build/bdist.linux-armv7l/wheel/pwem/objects 2026-03-20T14:01:07,030 copying build/lib/pwem/objects/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2026-03-20T14:01:07,032 copying build/lib/pwem/objects/data_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2026-03-20T14:01:07,035 copying build/lib/pwem/objects/data_flexhub.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2026-03-20T14:01:07,037 copying build/lib/pwem/objects/data.py -> build/bdist.linux-armv7l/wheel/./pwem/objects 2026-03-20T14:01:07,041 creating build/bdist.linux-armv7l/wheel/pwem/templates 2026-03-20T14:01:07,042 copying build/lib/pwem/templates/demo.json.template -> build/bdist.linux-armv7l/wheel/./pwem/templates 2026-03-20T14:01:07,046 creating build/bdist.linux-armv7l/wheel/pwem/protocols 2026-03-20T14:01:07,047 copying build/lib/pwem/protocols/protocol_tests.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,049 copying build/lib/pwem/protocols/parallel.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,051 copying build/lib/pwem/protocols/protocol_projection_edit.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,054 copying build/lib/pwem/protocols/protocol_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,056 copying build/lib/pwem/protocols/protocol_classes_selector.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,059 copying build/lib/pwem/protocols/protocol_crop_resize_vols.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,061 copying build/lib/pwem/protocols/protocol_pdf_report.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,063 copying build/lib/pwem/protocols/protocol_particles.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,066 copying build/lib/pwem/protocols/protocol_micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,069 copying build/lib/pwem/protocols/protocol_wait.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,071 creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_import 2026-03-20T14:01:07,073 copying build/lib/pwem/protocols/protocol_import/dataimport.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,076 copying build/lib/pwem/protocols/protocol_import/images.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,079 copying build/lib/pwem/protocols/protocol_import/ctfs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,081 copying build/lib/pwem/protocols/protocol_import/micrographs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,084 copying build/lib/pwem/protocols/protocol_import/volumes.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,087 copying build/lib/pwem/protocols/protocol_import/masks.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,089 copying build/lib/pwem/protocols/protocol_import/base.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,091 copying build/lib/pwem/protocols/protocol_import/particles.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,093 copying build/lib/pwem/protocols/protocol_import/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,095 copying build/lib/pwem/protocols/protocol_import/coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,098 copying build/lib/pwem/protocols/protocol_import/sequence.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_import 2026-03-20T14:01:07,101 creating build/bdist.linux-armv7l/wheel/pwem/protocols/protocol_export 2026-03-20T14:01:07,102 copying build/lib/pwem/protocols/protocol_export/protocol_export_DB.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_export 2026-03-20T14:01:07,105 copying build/lib/pwem/protocols/protocol_export/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols/protocol_export 2026-03-20T14:01:07,107 copying build/lib/pwem/protocols/protocol_sets.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,110 copying build/lib/pwem/protocols/protocol_base_flexhub.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,112 copying build/lib/pwem/protocols/protocol_particles_picking.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,115 copying build/lib/pwem/protocols/protocol_filter_by_normal.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,117 copying build/lib/pwem/protocols/protocol_2d.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,119 copying build/lib/pwem/protocols/protocol.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,121 copying build/lib/pwem/protocols/protocol_extract_coordinates.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,124 copying build/lib/pwem/protocols/protocol_set_editor.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,126 copying build/lib/pwem/protocols/protocol_ctf_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,128 copying build/lib/pwem/protocols/__init__.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,130 copying build/lib/pwem/protocols/protocol_set_filter.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,133 copying build/lib/pwem/protocols/protocol_tools.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,135 copying build/lib/pwem/protocols/protocol_movie_eraser.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,138 copying build/lib/pwem/protocols/protocol_boxsize_checkpoint.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,141 copying build/lib/pwem/protocols/protocol_3d.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,143 copying build/lib/pwem/protocols/protocol_alignment_assign.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,145 copying build/lib/pwem/protocols/protocol_boxsize_parameters.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,148 copying build/lib/pwem/protocols/protocol_align_movies.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,151 copying build/lib/pwem/protocols/protocol_origin_sampling_volume.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,153 copying build/lib/pwem/protocols/protocol_batch.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,156 copying build/lib/pwem/protocols/protocol_break_symmetry.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,158 copying build/lib/pwem/protocols/protocol_create_stream_data.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,160 copying build/lib/pwem/protocols/protocol_tiltpairs.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,162 copying build/lib/pwem/protocols/protocol_alignment_invertHand.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,165 copying build/lib/pwem/protocols/protocol_mathematical_operator.py -> build/bdist.linux-armv7l/wheel/./pwem/protocols 2026-03-20T14:01:07,167 running install_egg_info 2026-03-20T14:01:07,172 Copying scipion_em.egg-info to build/bdist.linux-armv7l/wheel/./scipion_em-3.11.0-py3.11.egg-info 2026-03-20T14:01:07,185 running install_scripts 2026-03-20T14:01:07,199 creating build/bdist.linux-armv7l/wheel/scipion_em-3.11.0.dist-info/WHEEL 2026-03-20T14:01:07,202 creating '/tmp/pip-wheel-en7fup7_/.tmp-timfucc1/scipion_em-3.11.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-20T14:01:07,205 adding 'pwem/__init__.py' 2026-03-20T14:01:07,207 adding 'pwem/bibtex.py' 2026-03-20T14:01:07,209 adding 'pwem/constants.py' 2026-03-20T14:01:07,210 adding 'pwem/protocols.conf' 2026-03-20T14:01:07,212 adding 'pwem/scipion_icon.png' 2026-03-20T14:01:07,213 adding 'pwem/utils.py' 2026-03-20T14:01:07,215 adding 'pwem/cmd/chimera_client.py' 2026-03-20T14:01:07,217 adding 'pwem/cmd/convert.py' 2026-03-20T14:01:07,218 adding 'pwem/cmd/program.py' 2026-03-20T14:01:07,220 adding 'pwem/convert/__init__.py' 2026-03-20T14:01:07,226 adding 'pwem/convert/atom_struct.py' 2026-03-20T14:01:07,229 adding 'pwem/convert/headers.py' 2026-03-20T14:01:07,231 adding 'pwem/convert/pdb_list.py' 2026-03-20T14:01:07,233 adding 'pwem/convert/sequence.py' 2026-03-20T14:01:07,240 adding 'pwem/convert/symmetry.py' 2026-03-20T14:01:07,253 adding 'pwem/convert/transformations.py' 2026-03-20T14:01:07,256 adding 'pwem/convert/trigonometry.py' 2026-03-20T14:01:07,258 adding 'pwem/convert/utils.py' 2026-03-20T14:01:07,260 adding 'pwem/emlib/__init__.py' 2026-03-20T14:01:07,265 adding 'pwem/emlib/_libNone.py' 2026-03-20T14:01:07,267 adding 'pwem/emlib/lib.py' 2026-03-20T14:01:07,269 adding 'pwem/emlib/image/__init__.py' 2026-03-20T14:01:07,273 adding 'pwem/emlib/image/image_handler.py' 2026-03-20T14:01:07,280 adding 'pwem/emlib/image/image_readers.py' 2026-03-20T14:01:07,283 adding 'pwem/emlib/metadata/__init__.py' 2026-03-20T14:01:07,286 adding 'pwem/emlib/metadata/utils.py' 2026-03-20T14:01:07,288 adding 'pwem/objects/__init__.py' 2026-03-20T14:01:07,307 adding 'pwem/objects/data.py' 2026-03-20T14:01:07,310 adding 'pwem/objects/data_flexhub.py' 2026-03-20T14:01:07,312 adding 'pwem/objects/data_tiltpairs.py' 2026-03-20T14:01:07,316 adding 'pwem/protocols/__init__.py' 2026-03-20T14:01:07,318 adding 'pwem/protocols/parallel.py' 2026-03-20T14:01:07,321 adding 'pwem/protocols/protocol.py' 2026-03-20T14:01:07,323 adding 'pwem/protocols/protocol_2d.py' 2026-03-20T14:01:07,325 adding 'pwem/protocols/protocol_3d.py' 2026-03-20T14:01:07,331 adding 'pwem/protocols/protocol_align_movies.py' 2026-03-20T14:01:07,334 adding 'pwem/protocols/protocol_alignment_assign.py' 2026-03-20T14:01:07,337 adding 'pwem/protocols/protocol_alignment_invertHand.py' 2026-03-20T14:01:07,338 adding 'pwem/protocols/protocol_base_flexhub.py' 2026-03-20T14:01:07,342 adding 'pwem/protocols/protocol_batch.py' 2026-03-20T14:01:07,344 adding 'pwem/protocols/protocol_boxsize_checkpoint.py' 2026-03-20T14:01:07,346 adding 'pwem/protocols/protocol_boxsize_parameters.py' 2026-03-20T14:01:07,348 adding 'pwem/protocols/protocol_break_symmetry.py' 2026-03-20T14:01:07,349 adding 'pwem/protocols/protocol_classes_selector.py' 2026-03-20T14:01:07,352 adding 'pwem/protocols/protocol_create_stream_data.py' 2026-03-20T14:01:07,354 adding 'pwem/protocols/protocol_crop_resize_vols.py' 2026-03-20T14:01:07,355 adding 'pwem/protocols/protocol_ctf_assign.py' 2026-03-20T14:01:07,358 adding 'pwem/protocols/protocol_extract_coordinates.py' 2026-03-20T14:01:07,359 adding 'pwem/protocols/protocol_filter_by_normal.py' 2026-03-20T14:01:07,361 adding 'pwem/protocols/protocol_mathematical_operator.py' 2026-03-20T14:01:07,364 adding 'pwem/protocols/protocol_micrographs.py' 2026-03-20T14:01:07,366 adding 'pwem/protocols/protocol_movie_eraser.py' 2026-03-20T14:01:07,369 adding 'pwem/protocols/protocol_movies.py' 2026-03-20T14:01:07,371 adding 'pwem/protocols/protocol_origin_sampling_volume.py' 2026-03-20T14:01:07,374 adding 'pwem/protocols/protocol_particles.py' 2026-03-20T14:01:07,377 adding 'pwem/protocols/protocol_particles_picking.py' 2026-03-20T14:01:07,379 adding 'pwem/protocols/protocol_pdf_report.py' 2026-03-20T14:01:07,381 adding 'pwem/protocols/protocol_projection_edit.py' 2026-03-20T14:01:07,383 adding 'pwem/protocols/protocol_set_editor.py' 2026-03-20T14:01:07,385 adding 'pwem/protocols/protocol_set_filter.py' 2026-03-20T14:01:07,390 adding 'pwem/protocols/protocol_sets.py' 2026-03-20T14:01:07,392 adding 'pwem/protocols/protocol_tests.py' 2026-03-20T14:01:07,394 adding 'pwem/protocols/protocol_tiltpairs.py' 2026-03-20T14:01:07,395 adding 'pwem/protocols/protocol_tools.py' 2026-03-20T14:01:07,396 adding 'pwem/protocols/protocol_wait.py' 2026-03-20T14:01:07,398 adding 'pwem/protocols/protocol_export/__init__.py' 2026-03-20T14:01:07,400 adding 'pwem/protocols/protocol_export/protocol_export_DB.py' 2026-03-20T14:01:07,402 adding 'pwem/protocols/protocol_import/__init__.py' 2026-03-20T14:01:07,404 adding 'pwem/protocols/protocol_import/base.py' 2026-03-20T14:01:07,407 adding 'pwem/protocols/protocol_import/coordinates.py' 2026-03-20T14:01:07,409 adding 'pwem/protocols/protocol_import/ctfs.py' 2026-03-20T14:01:07,411 adding 'pwem/protocols/protocol_import/dataimport.py' 2026-03-20T14:01:07,414 adding 'pwem/protocols/protocol_import/images.py' 2026-03-20T14:01:07,416 adding 'pwem/protocols/protocol_import/masks.py' 2026-03-20T14:01:07,419 adding 'pwem/protocols/protocol_import/micrographs.py' 2026-03-20T14:01:07,422 adding 'pwem/protocols/protocol_import/particles.py' 2026-03-20T14:01:07,424 adding 'pwem/protocols/protocol_import/sequence.py' 2026-03-20T14:01:07,428 adding 'pwem/protocols/protocol_import/volumes.py' 2026-03-20T14:01:07,430 adding 'pwem/templates/demo.json.template' 2026-03-20T14:01:07,433 adding 'pwem/tests/__init__.py' 2026-03-20T14:01:07,434 adding 'pwem/tests/utils.py' 2026-03-20T14:01:07,436 adding 'pwem/tests/data/__init__.py' 2026-03-20T14:01:08,272 adding 'pwem/tests/data/hexonAtomStruct.py' 2026-03-20T14:01:08,306 adding 'pwem/tests/data/test_convert_atom_struct.py' 2026-03-20T14:01:08,311 adding 'pwem/tests/data/test_data.py' 2026-03-20T14:01:08,313 adding 'pwem/tests/data/test_metadata.py' 2026-03-20T14:01:08,317 adding 'pwem/tests/data/test_symmetry.py' 2026-03-20T14:01:08,320 adding 'pwem/tests/protocols/__init__.py' 2026-03-20T14:01:08,321 adding 'pwem/tests/protocols/test_angular_distribution.py' 2026-03-20T14:01:08,323 adding 'pwem/tests/protocols/test_extract_particles.py' 2026-03-20T14:01:08,324 adding 'pwem/tests/protocols/test_notifier.py' 2026-03-20T14:01:08,326 adding 'pwem/tests/protocols/test_plugin.py' 2026-03-20T14:01:08,329 adding 'pwem/tests/protocols/test_projection_edit.py' 2026-03-20T14:01:08,331 adding 'pwem/tests/protocols/test_protocol_alignment_assign.py' 2026-03-20T14:01:08,333 adding 'pwem/tests/protocols/test_protocol_boxsize_checkpoint.py' 2026-03-20T14:01:08,334 adding 'pwem/tests/protocols/test_protocol_boxsize_parameters.py' 2026-03-20T14:01:08,336 adding 'pwem/tests/protocols/test_protocol_export2DB.py' 2026-03-20T14:01:08,338 adding 'pwem/tests/protocols/test_protocol_extract_coorinates.py' 2026-03-20T14:01:08,339 adding 'pwem/tests/protocols/test_protocol_invert_Hand.py' 2026-03-20T14:01:08,340 adding 'pwem/tests/protocols/test_protocol_mathematical_operator.py' 2026-03-20T14:01:08,342 adding 'pwem/tests/protocols/test_protocol_movie_eraser.py' 2026-03-20T14:01:08,343 adding 'pwem/tests/protocols/test_protocol_volume_homogenizer.py' 2026-03-20T14:01:08,344 adding 'pwem/tests/protocols/test_protocol_wait.py' 2026-03-20T14:01:08,346 adding 'pwem/tests/protocols/test_protocols_assign_orig.py' 2026-03-20T14:01:08,347 adding 'pwem/tests/protocols/test_protocols_crop_resize_vols.py' 2026-03-20T14:01:08,349 adding 'pwem/tests/protocols/test_protocols_import_atomstruct.py' 2026-03-20T14:01:08,351 adding 'pwem/tests/protocols/test_protocols_import_coords.py' 2026-03-20T14:01:08,352 adding 'pwem/tests/protocols/test_protocols_import_ctfs.py' 2026-03-20T14:01:08,353 adding 'pwem/tests/protocols/test_protocols_import_masks.py' 2026-03-20T14:01:08,355 adding 'pwem/tests/protocols/test_protocols_import_micrographs.py' 2026-03-20T14:01:08,357 adding 'pwem/tests/protocols/test_protocols_import_movies.py' 2026-03-20T14:01:08,358 adding 'pwem/tests/protocols/test_protocols_import_particles.py' 2026-03-20T14:01:08,360 adding 'pwem/tests/protocols/test_protocols_import_sequence.py' 2026-03-20T14:01:08,363 adding 'pwem/tests/protocols/test_protocols_import_volumes.py' 2026-03-20T14:01:08,364 adding 'pwem/tests/protocols/test_protocols_set_editor.py' 2026-03-20T14:01:08,366 adding 'pwem/tests/protocols/test_protocols_set_filter.py' 2026-03-20T14:01:08,369 adding 'pwem/tests/protocols/test_protocols_sets.py' 2026-03-20T14:01:08,371 adding 'pwem/tests/workflows/__init__.py' 2026-03-20T14:01:08,373 adding 'pwem/tests/workflows/test_parallel_gpu_queue.py' 2026-03-20T14:01:08,374 adding 'pwem/tests/workflows/test_workflow.py' 2026-03-20T14:01:08,376 adding 'pwem/tests/workflows/test_workflow_initialvolume.py' 2026-03-20T14:01:08,377 adding 'pwem/tests/workflows/test_workflow_mixed.py' 2026-03-20T14:01:08,379 adding 'pwem/tests/workflows/test_workflow_mixed_large.py' 2026-03-20T14:01:08,385 adding 'pwem/tests/workflows/test_workflow_modeling.py' 2026-03-20T14:01:08,387 adding 'pwem/tests/workflows/test_workflow_xmipp.py' 2026-03-20T14:01:08,389 adding 'pwem/tests/workflows/test_workflow_xmipp_assignment_tiltpairs.py' 2026-03-20T14:01:08,391 adding 'pwem/tests/workflows/test_workflow_xmipp_ctf_consensus.py' 2026-03-20T14:01:08,392 adding 'pwem/tests/workflows/test_workflow_xmipp_rct.py' 2026-03-20T14:01:08,394 adding 'pwem/viewers/__init__.py' 2026-03-20T14:01:08,396 adding 'pwem/viewers/filehandlers.py' 2026-03-20T14:01:08,398 adding 'pwem/viewers/plotter.py' 2026-03-20T14:01:08,401 adding 'pwem/viewers/showj.py' 2026-03-20T14:01:08,402 adding 'pwem/viewers/viewer_angular_dist.py' 2026-03-20T14:01:08,403 adding 'pwem/viewers/viewer_base.py' 2026-03-20T14:01:08,406 adding 'pwem/viewers/viewer_chimera.py' 2026-03-20T14:01:08,412 adding 'pwem/viewers/viewer_coordinates.py' 2026-03-20T14:01:08,414 adding 'pwem/viewers/viewer_fsc.py' 2026-03-20T14:01:08,417 adding 'pwem/viewers/viewer_localres.py' 2026-03-20T14:01:08,418 adding 'pwem/viewers/viewer_pdf.py' 2026-03-20T14:01:08,419 adding 'pwem/viewers/viewer_sequence.py' 2026-03-20T14:01:08,421 adding 'pwem/viewers/viewer_vmd.py' 2026-03-20T14:01:08,422 adding 'pwem/viewers/viewer_volumes.py' 2026-03-20T14:01:08,424 adding 'pwem/viewers/viewers_data.py' 2026-03-20T14:01:08,426 adding 'pwem/viewers/viewers_protocols.py' 2026-03-20T14:01:08,428 adding 'pwem/viewers/views.py' 2026-03-20T14:01:08,430 adding 'pwem/viewers/mdviewer/__init__.py' 2026-03-20T14:01:08,431 adding 'pwem/viewers/mdviewer/readers.py' 2026-03-20T14:01:08,435 adding 'pwem/viewers/mdviewer/sqlite_dao.py' 2026-03-20T14:01:08,437 adding 'pwem/viewers/mdviewer/star_dao.py' 2026-03-20T14:01:08,438 adding 'pwem/viewers/mdviewer/viewer.py' 2026-03-20T14:01:08,441 adding 'pwem/viewers/mdviewer/volumeViewer.py' 2026-03-20T14:01:08,443 adding 'pwem/wizards/__init__.py' 2026-03-20T14:01:08,448 adding 'pwem/wizards/wizard.py' 2026-03-20T14:01:08,451 adding 'pwem/wizards/wizards.py' 2026-03-20T14:01:08,453 adding 'pwem/wizards/wizards_3d/__init__.py' 2026-03-20T14:01:08,454 adding 'pwem/wizards/wizards_3d/callbacks.py' 2026-03-20T14:01:08,456 adding 'pwem/wizards/wizards_3d/mask_structure_wizard.py' 2026-03-20T14:01:08,458 adding 'pwem/wizards/wizards_3d/mask_volume_wizard.py' 2026-03-20T14:01:08,465 adding 'scipion_em-3.11.0.dist-info/licenses/LICENSE' 2026-03-20T14:01:08,467 adding 'scipion_em-3.11.0.dist-info/METADATA' 2026-03-20T14:01:08,468 adding 'scipion_em-3.11.0.dist-info/WHEEL' 2026-03-20T14:01:08,469 adding 'scipion_em-3.11.0.dist-info/entry_points.txt' 2026-03-20T14:01:08,469 adding 'scipion_em-3.11.0.dist-info/top_level.txt' 2026-03-20T14:01:08,472 adding 'scipion_em-3.11.0.dist-info/RECORD' 2026-03-20T14:01:08,493 removing build/bdist.linux-armv7l/wheel 2026-03-20T14:01:08,636 Building wheel for scipion-em (pyproject.toml): finished with status 'done' 2026-03-20T14:01:08,671 Created wheel for scipion-em: filename=scipion_em-3.11.0-py3-none-any.whl size=1654516 sha256=aefe116122b7a6bf444bb2a395f27547659874bdb3e3f107932abab7679a28ef 2026-03-20T14:01:08,672 Stored in directory: /tmp/pip-ephem-wheel-cache-6arbtex2/wheels/17/d2/8c/aa413dc8e3f7ac21e534e947ba3f2a11fac99512cdc5bb53e3 2026-03-20T14:01:08,689 Successfully built scipion-em 2026-03-20T14:01:08,733 Removed build tracker: '/tmp/pip-build-tracker-697xtf4e'