2026-03-20T14:34:33,978 Created temporary directory: /tmp/pip-ephem-wheel-cache-bfv3i9qi 2026-03-20T14:34:33,979 Created temporary directory: /tmp/pip-build-tracker-zai215_u 2026-03-20T14:34:33,980 Initialized build tracking at /tmp/pip-build-tracker-zai215_u 2026-03-20T14:34:33,980 Created build tracker: /tmp/pip-build-tracker-zai215_u 2026-03-20T14:34:33,981 Entered build tracker: /tmp/pip-build-tracker-zai215_u 2026-03-20T14:34:33,982 Created temporary directory: /tmp/pip-wheel-uudrzzbj 2026-03-20T14:34:33,984 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-20T14:34:33,987 Created temporary directory: /tmp/pip-ephem-wheel-cache-lrtwnwue 2026-03-20T14:34:34,008 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-20T14:34:34,012 2 location(s) to search for versions of spatialformer: 2026-03-20T14:34:34,012 * https://pypi.org/simple/spatialformer/ 2026-03-20T14:34:34,012 * https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:34:34,012 Fetching project page and analyzing links: https://pypi.org/simple/spatialformer/ 2026-03-20T14:34:34,013 Getting page https://pypi.org/simple/spatialformer/ 2026-03-20T14:34:34,014 Found index url https://pypi.org/simple 2026-03-20T14:34:34,156 Fetched page https://pypi.org/simple/spatialformer/ as application/vnd.pypi.simple.v1+json 2026-03-20T14:34:34,160 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/67/e8/96287c1d40f52743b8b0d95e7ae7edfa5b3dae9ad193ac4fd283bb0726dd/SpatialFormer-0.0.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9) 2026-03-20T14:34:34,161 Found link https://files.pythonhosted.org/packages/57/ed/b3d4ff5a83254298007850bde4d0e575dc5ef44c08f0407045a4ddc5143f/SpatialFormer-0.0.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9), version: 0.0.2 2026-03-20T14:34:34,161 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/61/7f/f281a742e3ef3e3229bb6e6840a45cf151130b28e9ff6ee89f4c01253d42/spatialformer-0.0.20-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8) 2026-03-20T14:34:34,162 Found link https://files.pythonhosted.org/packages/04/6a/e64b79f3c0c14d16ba740d29b12b83bf269b5644127814969c6d8fd42a60/spatialformer-0.0.20.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8), version: 0.0.20 2026-03-20T14:34:34,163 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/81/4a/28b750ea2236955fa02c2810e513b4bafa33167752e8012e5684718bc76f/spatialformer-0.1.1-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,164 Found link https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.1 2026-03-20T14:34:34,165 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/e6/1c/b53e2ee4988b2290f601f0b0271b20e317a7a67769352cd3b9d79fc58bb3/spatialformer-0.1.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,166 Found link https://files.pythonhosted.org/packages/25/86/4f0cdfb8e011e46781ecaa31deb9b07a440302cae6306406e9f394cc62b9/spatialformer-0.1.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.2 2026-03-20T14:34:34,166 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/c8/73/c8063afb0735bfa83c6ed0a4f21743b43eb57c90672ccc7f4b27abac4ac2/spatialformer-0.1.3-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,167 Found link https://files.pythonhosted.org/packages/10/f0/b3fe686dc22e745e23209a8892bacd026a9f61cab192a30df2487383b5e5/spatialformer-0.1.3.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.3 2026-03-20T14:34:34,168 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/05/1d/0beedf110bb7a14c7f2289046a38ab2d160af1cb77aed60d03d1d4ad436c/spatialformer-0.1.4-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,169 Found link https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.4 2026-03-20T14:34:34,170 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/85/72/fbe9f2043c92b967d39ace23051321e613139f18f0286fb88a35934c8c27/spatialformer-0.1.5-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,170 Found link https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.5 2026-03-20T14:34:34,171 Fetching project page and analyzing links: https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:34:34,172 Getting page https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:34:34,173 Found index url https://www.piwheels.org/simple 2026-03-20T14:34:34,330 Fetched page https://www.piwheels.org/simple/spatialformer/ as text/html 2026-03-20T14:34:34,332 Skipping link: No binaries permitted for spatialformer: https://www.piwheels.org/simple/spatialformer/spatialformer-0.1.3-py3-none-any.whl#sha256=8e4adfc89ae0fbbbdbaa3a0d11ea406797372805347a492158d6fbbfba2d292c (from https://www.piwheels.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,333 Skipping link: No binaries permitted for spatialformer: https://www.piwheels.org/simple/spatialformer/spatialformer-0.1.1-py3-none-any.whl#sha256=ea17bdcb84caee63440effbdf751abeb1c4dc6dfcfc98f7cf14964e1198d3046 (from https://www.piwheels.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:34:34,333 Skipping link: not a file: https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:34:34,334 Skipping link: not a file: https://pypi.org/simple/spatialformer/ 2026-03-20T14:34:34,353 Given no hashes to check 1 links for project 'spatialformer': discarding no candidates 2026-03-20T14:34:34,371 Collecting spatialformer==0.1.4 2026-03-20T14:34:34,374 Created temporary directory: /tmp/pip-unpack-_lcxk0xu 2026-03-20T14:34:34,608 Downloading spatialformer-0.1.4.tar.gz (3.9 MB) 2026-03-20T14:34:35,485 Added spatialformer==0.1.4 from https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz to build tracker '/tmp/pip-build-tracker-zai215_u' 2026-03-20T14:34:35,486 Running setup.py (path:/tmp/pip-wheel-uudrzzbj/spatialformer_290855b886e4448c814ca25e680bd574/setup.py) egg_info for package spatialformer 2026-03-20T14:34:35,487 Created temporary directory: /tmp/pip-pip-egg-info-cjeqfc30 2026-03-20T14:34:35,488 Preparing metadata (setup.py): started 2026-03-20T14:34:35,489 Running command python setup.py egg_info 2026-03-20T14:34:36,361 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-20T14:34:36,361 !! 2026-03-20T14:34:36,362 ******************************************************************************** 2026-03-20T14:34:36,363 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-20T14:34:36,364 License :: OSI Approved :: MIT License 2026-03-20T14:34:36,366 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:34:36,366 ******************************************************************************** 2026-03-20T14:34:36,367 !! 2026-03-20T14:34:36,368 self._finalize_license_expression() 2026-03-20T14:34:36,390 running egg_info 2026-03-20T14:34:36,416 creating /tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info 2026-03-20T14:34:36,418 writing /tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/PKG-INFO 2026-03-20T14:34:36,421 writing dependency_links to /tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/dependency_links.txt 2026-03-20T14:34:36,423 writing requirements to /tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/requires.txt 2026-03-20T14:34:36,424 writing top-level names to /tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/top_level.txt 2026-03-20T14:34:36,426 writing manifest file '/tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:34:36,525 reading manifest file '/tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:34:36,527 reading manifest template 'MANIFEST.in' 2026-03-20T14:34:36,529 warning: no files found matching 'spatialformer/spatial_embeddings/*.json' 2026-03-20T14:34:36,530 adding license file 'LICENSE' 2026-03-20T14:34:36,533 writing manifest file '/tmp/pip-pip-egg-info-cjeqfc30/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:34:36,641 Preparing metadata (setup.py): finished with status 'done' 2026-03-20T14:34:36,646 Source in /tmp/pip-wheel-uudrzzbj/spatialformer_290855b886e4448c814ca25e680bd574 has version 0.1.4, which satisfies requirement spatialformer==0.1.4 from https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz 2026-03-20T14:34:36,647 Removed spatialformer==0.1.4 from https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz from build tracker '/tmp/pip-build-tracker-zai215_u' 2026-03-20T14:34:36,653 Created temporary directory: /tmp/pip-unpack-ezxt0uif 2026-03-20T14:34:36,653 Building wheels for collected packages: spatialformer 2026-03-20T14:34:36,658 Created temporary directory: /tmp/pip-wheel-9hf7d0fw 2026-03-20T14:34:36,659 Building wheel for spatialformer (setup.py): started 2026-03-20T14:34:36,660 Destination directory: /tmp/pip-wheel-9hf7d0fw 2026-03-20T14:34:36,661 Running command python setup.py bdist_wheel 2026-03-20T14:34:37,494 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-20T14:34:37,494 !! 2026-03-20T14:34:37,495 ******************************************************************************** 2026-03-20T14:34:37,496 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-20T14:34:37,497 License :: OSI Approved :: MIT License 2026-03-20T14:34:37,498 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:34:37,499 ******************************************************************************** 2026-03-20T14:34:37,500 !! 2026-03-20T14:34:37,500 self._finalize_license_expression() 2026-03-20T14:34:37,501 running bdist_wheel 2026-03-20T14:34:37,627 running build 2026-03-20T14:34:37,627 running build_py 2026-03-20T14:34:37,659 creating build/lib/spatialformer 2026-03-20T14:34:37,661 copying spatialformer/data_loader.py -> build/lib/spatialformer 2026-03-20T14:34:37,665 copying spatialformer/utils.py -> build/lib/spatialformer 2026-03-20T14:34:37,668 copying spatialformer/processor.py -> build/lib/spatialformer 2026-03-20T14:34:37,670 copying spatialformer/GraphSAGE.py -> build/lib/spatialformer 2026-03-20T14:34:37,673 copying spatialformer/graphsage.py -> build/lib/spatialformer 2026-03-20T14:34:37,675 copying spatialformer/train.py -> build/lib/spatialformer 2026-03-20T14:34:37,678 copying spatialformer/__init__.py -> build/lib/spatialformer 2026-03-20T14:34:37,680 creating build/lib/spatialformer/config 2026-03-20T14:34:37,681 copying spatialformer/config/__init__.py -> build/lib/spatialformer/config 2026-03-20T14:34:37,683 creating build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,684 copying spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,688 copying spatialformer/gene_gene_calculation/mask_dataset.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,690 copying spatialformer/gene_gene_calculation/process.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,693 copying spatialformer/gene_gene_calculation/h5toloader.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,695 copying spatialformer/gene_gene_calculation/__init__.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,697 copying spatialformer/gene_gene_calculation/build_h5ad.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:34:37,699 creating build/lib/spatialformer/model 2026-03-20T14:34:37,700 copying spatialformer/model/settings.py -> build/lib/spatialformer/model 2026-03-20T14:34:37,702 copying spatialformer/model/Spaformer.py -> build/lib/spatialformer/model 2026-03-20T14:34:37,705 copying spatialformer/model/Spaformer_pair.py -> build/lib/spatialformer/model 2026-03-20T14:34:37,708 copying spatialformer/model/model.py -> build/lib/spatialformer/model 2026-03-20T14:34:37,710 copying spatialformer/model/__init__.py -> build/lib/spatialformer/model 2026-03-20T14:34:37,712 creating build/lib/spatialformer/tools 2026-03-20T14:34:37,713 copying spatialformer/tools/get_embeddings.py -> build/lib/spatialformer/tools 2026-03-20T14:34:37,716 copying spatialformer/tools/__init__.py -> build/lib/spatialformer/tools 2026-03-20T14:34:37,718 creating build/lib/spatialformer/preprocess 2026-03-20T14:34:37,719 copying spatialformer/preprocess/find_gene_interaction.py -> build/lib/spatialformer/preprocess 2026-03-20T14:34:37,722 copying spatialformer/preprocess/__init__.py -> build/lib/spatialformer/preprocess 2026-03-20T14:34:37,724 creating build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,725 copying spatialformer/tokenizer/__init__.py -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,727 creating build/lib/spatialformer/spatial_embeddings 2026-03-20T14:34:37,728 copying spatialformer/spatial_embeddings/__init__.py -> build/lib/spatialformer/spatial_embeddings 2026-03-20T14:34:37,730 creating build/lib/spatialformer/dataloader 2026-03-20T14:34:37,731 copying spatialformer/dataloader/__init__.py -> build/lib/spatialformer/dataloader 2026-03-20T14:34:37,733 copying spatialformer/dataloader/dataloader_paired.py -> build/lib/spatialformer/dataloader 2026-03-20T14:34:37,736 creating build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,737 copying spatialformer/model/submodules/layer_modules.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,739 copying spatialformer/model/submodules/masked_conv.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,742 copying spatialformer/model/submodules/modules.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,744 copying spatialformer/model/submodules/alibi.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,746 copying spatialformer/model/submodules/activations.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,749 copying spatialformer/model/submodules/flash_attention2.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,753 copying spatialformer/model/submodules/__init__.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,754 copying spatialformer/model/submodules/masked_batchnorm.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:34:37,756 running egg_info 2026-03-20T14:34:37,783 writing spatialformer.egg-info/PKG-INFO 2026-03-20T14:34:37,786 writing dependency_links to spatialformer.egg-info/dependency_links.txt 2026-03-20T14:34:37,788 writing requirements to spatialformer.egg-info/requires.txt 2026-03-20T14:34:37,789 writing top-level names to spatialformer.egg-info/top_level.txt 2026-03-20T14:34:37,829 reading manifest file 'spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:34:37,834 reading manifest template 'MANIFEST.in' 2026-03-20T14:34:37,836 warning: no files found matching 'spatialformer/spatial_embeddings/*.json' 2026-03-20T14:34:37,836 adding license file 'LICENSE' 2026-03-20T14:34:37,841 writing manifest file 'spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:34:37,849 copying spatialformer/config/_config_fine_tune_probe.json -> build/lib/spatialformer/config 2026-03-20T14:34:37,851 copying spatialformer/config/_config_graphsave.json -> build/lib/spatialformer/config 2026-03-20T14:34:37,853 copying spatialformer/config/_config_train.json -> build/lib/spatialformer/config 2026-03-20T14:34:37,855 copying spatialformer/config/_config_train_large_pair.json -> build/lib/spatialformer/config 2026-03-20T14:34:37,857 copying spatialformer/config/_config_train_large_single.json -> build/lib/spatialformer/config 2026-03-20T14:34:37,859 copying spatialformer/tokenizer/token.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,862 copying spatialformer/tokenizer/tokenv2.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,867 copying spatialformer/tokenizer/tokenv3.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,870 copying spatialformer/tokenizer/tokenv4.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,873 copying spatialformer/tokenizer/tokenv5.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:34:37,878 copying spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/lib/spatialformer/spatial_embeddings 2026-03-20T14:34:38,080 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-20T14:34:38,080 !! 2026-03-20T14:34:38,081 ******************************************************************************** 2026-03-20T14:34:38,082 Please avoid running ``setup.py`` directly. 2026-03-20T14:34:38,083 Instead, use pypa/build, pypa/installer or other 2026-03-20T14:34:38,083 standards-based tools. 2026-03-20T14:34:38,085 This deprecation is overdue, please update your project and remove deprecated 2026-03-20T14:34:38,085 calls to avoid build errors in the future. 2026-03-20T14:34:38,086 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-20T14:34:38,087 ******************************************************************************** 2026-03-20T14:34:38,088 !! 2026-03-20T14:34:38,089 self.initialize_options() 2026-03-20T14:34:38,107 installing to build/bdist.linux-armv7l/wheel 2026-03-20T14:34:38,108 running install 2026-03-20T14:34:38,131 running install_lib 2026-03-20T14:34:38,157 creating build/bdist.linux-armv7l/wheel 2026-03-20T14:34:38,159 creating build/bdist.linux-armv7l/wheel/spatialformer 2026-03-20T14:34:38,160 copying build/lib/spatialformer/data_loader.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,164 creating build/bdist.linux-armv7l/wheel/spatialformer/config 2026-03-20T14:34:38,165 copying build/lib/spatialformer/config/_config_train_large_pair.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,167 copying build/lib/spatialformer/config/_config_train_large_single.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,169 copying build/lib/spatialformer/config/_config_fine_tune_probe.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,171 copying build/lib/spatialformer/config/_config_train.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,172 copying build/lib/spatialformer/config/_config_graphsave.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,174 copying build/lib/spatialformer/config/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:34:38,176 copying build/lib/spatialformer/utils.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,179 creating build/bdist.linux-armv7l/wheel/spatialformer/gene_gene_calculation 2026-03-20T14:34:38,180 copying build/lib/spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,182 copying build/lib/spatialformer/gene_gene_calculation/mask_dataset.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,185 copying build/lib/spatialformer/gene_gene_calculation/process.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,187 copying build/lib/spatialformer/gene_gene_calculation/h5toloader.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,190 copying build/lib/spatialformer/gene_gene_calculation/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,191 copying build/lib/spatialformer/gene_gene_calculation/build_h5ad.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:34:38,194 creating build/bdist.linux-armv7l/wheel/spatialformer/model 2026-03-20T14:34:38,195 copying build/lib/spatialformer/model/settings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:34:38,197 creating build/bdist.linux-armv7l/wheel/spatialformer/model/submodules 2026-03-20T14:34:38,198 copying build/lib/spatialformer/model/submodules/layer_modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,200 copying build/lib/spatialformer/model/submodules/masked_conv.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,202 copying build/lib/spatialformer/model/submodules/modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,205 copying build/lib/spatialformer/model/submodules/alibi.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,207 copying build/lib/spatialformer/model/submodules/activations.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,209 copying build/lib/spatialformer/model/submodules/flash_attention2.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,212 copying build/lib/spatialformer/model/submodules/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,214 copying build/lib/spatialformer/model/submodules/masked_batchnorm.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:34:38,216 copying build/lib/spatialformer/model/Spaformer.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:34:38,219 copying build/lib/spatialformer/model/Spaformer_pair.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:34:38,222 copying build/lib/spatialformer/model/model.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:34:38,224 copying build/lib/spatialformer/model/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:34:38,226 copying build/lib/spatialformer/processor.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,228 copying build/lib/spatialformer/GraphSAGE.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,231 creating build/bdist.linux-armv7l/wheel/spatialformer/tools 2026-03-20T14:34:38,232 copying build/lib/spatialformer/tools/get_embeddings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools 2026-03-20T14:34:38,236 copying build/lib/spatialformer/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools 2026-03-20T14:34:38,238 copying build/lib/spatialformer/graphsage.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,240 copying build/lib/spatialformer/train.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,243 creating build/bdist.linux-armv7l/wheel/spatialformer/preprocess 2026-03-20T14:34:38,244 copying build/lib/spatialformer/preprocess/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess 2026-03-20T14:34:38,246 copying build/lib/spatialformer/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess 2026-03-20T14:34:38,249 creating build/bdist.linux-armv7l/wheel/spatialformer/tokenizer 2026-03-20T14:34:38,250 copying build/lib/spatialformer/tokenizer/tokenv2.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,254 copying build/lib/spatialformer/tokenizer/tokenv4.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,256 copying build/lib/spatialformer/tokenizer/token.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,258 copying build/lib/spatialformer/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,260 copying build/lib/spatialformer/tokenizer/tokenv5.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,264 copying build/lib/spatialformer/tokenizer/tokenv3.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:34:38,267 copying build/lib/spatialformer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:34:38,269 creating build/bdist.linux-armv7l/wheel/spatialformer/spatial_embeddings 2026-03-20T14:34:38,270 copying build/lib/spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings 2026-03-20T14:34:38,329 copying build/lib/spatialformer/spatial_embeddings/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings 2026-03-20T14:34:38,331 creating build/bdist.linux-armv7l/wheel/spatialformer/dataloader 2026-03-20T14:34:38,332 copying build/lib/spatialformer/dataloader/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader 2026-03-20T14:34:38,334 copying build/lib/spatialformer/dataloader/dataloader_paired.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader 2026-03-20T14:34:38,337 running install_egg_info 2026-03-20T14:34:38,371 Copying spatialformer.egg-info to build/bdist.linux-armv7l/wheel/./spatialformer-0.1.4-py3.11.egg-info 2026-03-20T14:34:38,380 running install_scripts 2026-03-20T14:34:38,390 creating build/bdist.linux-armv7l/wheel/spatialformer-0.1.4.dist-info/WHEEL 2026-03-20T14:34:38,393 creating '/tmp/pip-wheel-9hf7d0fw/spatialformer-0.1.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-20T14:34:38,397 adding 'spatialformer/GraphSAGE.py' 2026-03-20T14:34:38,399 adding 'spatialformer/__init__.py' 2026-03-20T14:34:38,402 adding 'spatialformer/data_loader.py' 2026-03-20T14:34:38,405 adding 'spatialformer/graphsage.py' 2026-03-20T14:34:38,406 adding 'spatialformer/processor.py' 2026-03-20T14:34:38,408 adding 'spatialformer/train.py' 2026-03-20T14:34:38,414 adding 'spatialformer/utils.py' 2026-03-20T14:34:38,416 adding 'spatialformer/config/__init__.py' 2026-03-20T14:34:38,417 adding 'spatialformer/config/_config_fine_tune_probe.json' 2026-03-20T14:34:38,419 adding 'spatialformer/config/_config_graphsave.json' 2026-03-20T14:34:38,420 adding 'spatialformer/config/_config_train.json' 2026-03-20T14:34:38,421 adding 'spatialformer/config/_config_train_large_pair.json' 2026-03-20T14:34:38,422 adding 'spatialformer/config/_config_train_large_single.json' 2026-03-20T14:34:38,424 adding 'spatialformer/dataloader/__init__.py' 2026-03-20T14:34:38,432 adding 'spatialformer/dataloader/dataloader_paired.py' 2026-03-20T14:34:38,434 adding 'spatialformer/gene_gene_calculation/__init__.py' 2026-03-20T14:34:38,436 adding 'spatialformer/gene_gene_calculation/build_h5ad.py' 2026-03-20T14:34:38,438 adding 'spatialformer/gene_gene_calculation/find_gene_interaction.py' 2026-03-20T14:34:38,441 adding 'spatialformer/gene_gene_calculation/h5toloader.py' 2026-03-20T14:34:38,443 adding 'spatialformer/gene_gene_calculation/mask_dataset.py' 2026-03-20T14:34:38,445 adding 'spatialformer/gene_gene_calculation/process.py' 2026-03-20T14:34:38,449 adding 'spatialformer/model/Spaformer.py' 2026-03-20T14:34:38,455 adding 'spatialformer/model/Spaformer_pair.py' 2026-03-20T14:34:38,456 adding 'spatialformer/model/__init__.py' 2026-03-20T14:34:38,457 adding 'spatialformer/model/model.py' 2026-03-20T14:34:38,459 adding 'spatialformer/model/settings.py' 2026-03-20T14:34:38,460 adding 'spatialformer/model/submodules/__init__.py' 2026-03-20T14:34:38,462 adding 'spatialformer/model/submodules/activations.py' 2026-03-20T14:34:38,463 adding 'spatialformer/model/submodules/alibi.py' 2026-03-20T14:34:38,467 adding 'spatialformer/model/submodules/flash_attention2.py' 2026-03-20T14:34:38,469 adding 'spatialformer/model/submodules/layer_modules.py' 2026-03-20T14:34:38,470 adding 'spatialformer/model/submodules/masked_batchnorm.py' 2026-03-20T14:34:38,472 adding 'spatialformer/model/submodules/masked_conv.py' 2026-03-20T14:34:38,474 adding 'spatialformer/model/submodules/modules.py' 2026-03-20T14:34:38,475 adding 'spatialformer/preprocess/__init__.py' 2026-03-20T14:34:38,477 adding 'spatialformer/preprocess/find_gene_interaction.py' 2026-03-20T14:34:38,479 adding 'spatialformer/spatial_embeddings/__init__.py' 2026-03-20T14:34:39,065 adding 'spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl' 2026-03-20T14:34:39,091 adding 'spatialformer/tokenizer/__init__.py' 2026-03-20T14:34:39,094 adding 'spatialformer/tokenizer/token.json' 2026-03-20T14:34:39,119 adding 'spatialformer/tokenizer/tokenv2.json' 2026-03-20T14:34:39,126 adding 'spatialformer/tokenizer/tokenv3.json' 2026-03-20T14:34:39,134 adding 'spatialformer/tokenizer/tokenv4.json' 2026-03-20T14:34:39,158 adding 'spatialformer/tokenizer/tokenv5.json' 2026-03-20T14:34:39,160 adding 'spatialformer/tools/__init__.py' 2026-03-20T14:34:39,167 adding 'spatialformer/tools/get_embeddings.py' 2026-03-20T14:34:39,169 adding 'spatialformer-0.1.4.dist-info/licenses/LICENSE' 2026-03-20T14:34:39,171 adding 'spatialformer-0.1.4.dist-info/METADATA' 2026-03-20T14:34:39,171 adding 'spatialformer-0.1.4.dist-info/WHEEL' 2026-03-20T14:34:39,172 adding 'spatialformer-0.1.4.dist-info/top_level.txt' 2026-03-20T14:34:39,174 adding 'spatialformer-0.1.4.dist-info/RECORD' 2026-03-20T14:34:39,216 removing build/bdist.linux-armv7l/wheel 2026-03-20T14:34:39,341 Building wheel for spatialformer (setup.py): finished with status 'done' 2026-03-20T14:34:39,383 Created wheel for spatialformer: filename=spatialformer-0.1.4-py3-none-any.whl size=3936136 sha256=4e4bc1bf2ac5d843fa3910d0400af5df9c35f4af59b7414df3ab398c47f16c07 2026-03-20T14:34:39,384 Stored in directory: /tmp/pip-ephem-wheel-cache-lrtwnwue/wheels/66/c4/70/295a01d97519108475bd6587c783ba8d073f18412b24e43516 2026-03-20T14:34:39,397 Successfully built spatialformer 2026-03-20T14:34:39,507 Removed build tracker: '/tmp/pip-build-tracker-zai215_u'