2026-03-20T14:44:35,514 Created temporary directory: /tmp/pip-ephem-wheel-cache-ep3bvxt9 2026-03-20T14:44:35,516 Created temporary directory: /tmp/pip-build-tracker-xb6hcfa4 2026-03-20T14:44:35,516 Initialized build tracking at /tmp/pip-build-tracker-xb6hcfa4 2026-03-20T14:44:35,517 Created build tracker: /tmp/pip-build-tracker-xb6hcfa4 2026-03-20T14:44:35,517 Entered build tracker: /tmp/pip-build-tracker-xb6hcfa4 2026-03-20T14:44:35,518 Created temporary directory: /tmp/pip-wheel-uith1im2 2026-03-20T14:44:35,521 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-20T14:44:35,523 Created temporary directory: /tmp/pip-ephem-wheel-cache-d84m4n_p 2026-03-20T14:44:35,547 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-20T14:44:35,550 2 location(s) to search for versions of spatialformer: 2026-03-20T14:44:35,550 * https://pypi.org/simple/spatialformer/ 2026-03-20T14:44:35,550 * https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:44:35,551 Fetching project page and analyzing links: https://pypi.org/simple/spatialformer/ 2026-03-20T14:44:35,552 Getting page https://pypi.org/simple/spatialformer/ 2026-03-20T14:44:35,553 Found index url https://pypi.org/simple 2026-03-20T14:44:35,692 Fetched page https://pypi.org/simple/spatialformer/ as application/vnd.pypi.simple.v1+json 2026-03-20T14:44:35,696 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/67/e8/96287c1d40f52743b8b0d95e7ae7edfa5b3dae9ad193ac4fd283bb0726dd/SpatialFormer-0.0.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9) 2026-03-20T14:44:35,697 Found link https://files.pythonhosted.org/packages/57/ed/b3d4ff5a83254298007850bde4d0e575dc5ef44c08f0407045a4ddc5143f/SpatialFormer-0.0.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.9), version: 0.0.2 2026-03-20T14:44:35,698 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/61/7f/f281a742e3ef3e3229bb6e6840a45cf151130b28e9ff6ee89f4c01253d42/spatialformer-0.0.20-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8) 2026-03-20T14:44:35,699 Found link https://files.pythonhosted.org/packages/04/6a/e64b79f3c0c14d16ba740d29b12b83bf269b5644127814969c6d8fd42a60/spatialformer-0.0.20.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.8), version: 0.0.20 2026-03-20T14:44:35,700 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/81/4a/28b750ea2236955fa02c2810e513b4bafa33167752e8012e5684718bc76f/spatialformer-0.1.1-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,701 Found link https://files.pythonhosted.org/packages/0b/50/d7ea0775f830fe96b5c47f510f6ed34bb0c576f3ab2316b5558637fbe84a/spatialformer-0.1.1.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.1 2026-03-20T14:44:35,701 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/e6/1c/b53e2ee4988b2290f601f0b0271b20e317a7a67769352cd3b9d79fc58bb3/spatialformer-0.1.2-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,702 Found link https://files.pythonhosted.org/packages/25/86/4f0cdfb8e011e46781ecaa31deb9b07a440302cae6306406e9f394cc62b9/spatialformer-0.1.2.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.2 2026-03-20T14:44:35,703 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/c8/73/c8063afb0735bfa83c6ed0a4f21743b43eb57c90672ccc7f4b27abac4ac2/spatialformer-0.1.3-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,704 Found link https://files.pythonhosted.org/packages/10/f0/b3fe686dc22e745e23209a8892bacd026a9f61cab192a30df2487383b5e5/spatialformer-0.1.3.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.3 2026-03-20T14:44:35,705 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/05/1d/0beedf110bb7a14c7f2289046a38ab2d160af1cb77aed60d03d1d4ad436c/spatialformer-0.1.4-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,706 Found link https://files.pythonhosted.org/packages/94/da/215fc99202870be1445f3dec0de0250bf74faa5276a9b5c40af423231e1c/spatialformer-0.1.4.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.4 2026-03-20T14:44:35,706 Skipping link: No binaries permitted for spatialformer: https://files.pythonhosted.org/packages/85/72/fbe9f2043c92b967d39ace23051321e613139f18f0286fb88a35934c8c27/spatialformer-0.1.5-py3-none-any.whl (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,707 Found link https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz (from https://pypi.org/simple/spatialformer/) (requires-python:>=3.10), version: 0.1.5 2026-03-20T14:44:35,708 Fetching project page and analyzing links: https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:44:35,709 Getting page https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:44:35,710 Found index url https://www.piwheels.org/simple 2026-03-20T14:44:35,868 Fetched page https://www.piwheels.org/simple/spatialformer/ as text/html 2026-03-20T14:44:35,870 Skipping link: No binaries permitted for spatialformer: https://www.piwheels.org/simple/spatialformer/spatialformer-0.1.4-py3-none-any.whl#sha256=4e4bc1bf2ac5d843fa3910d0400af5df9c35f4af59b7414df3ab398c47f16c07 (from https://www.piwheels.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,871 Skipping link: No binaries permitted for spatialformer: https://www.piwheels.org/simple/spatialformer/spatialformer-0.1.3-py3-none-any.whl#sha256=8e4adfc89ae0fbbbdbaa3a0d11ea406797372805347a492158d6fbbfba2d292c (from https://www.piwheels.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,871 Skipping link: No binaries permitted for spatialformer: https://www.piwheels.org/simple/spatialformer/spatialformer-0.1.1-py3-none-any.whl#sha256=ea17bdcb84caee63440effbdf751abeb1c4dc6dfcfc98f7cf14964e1198d3046 (from https://www.piwheels.org/simple/spatialformer/) (requires-python:>=3.10) 2026-03-20T14:44:35,872 Skipping link: not a file: https://www.piwheels.org/simple/spatialformer/ 2026-03-20T14:44:35,873 Skipping link: not a file: https://pypi.org/simple/spatialformer/ 2026-03-20T14:44:35,892 Given no hashes to check 1 links for project 'spatialformer': discarding no candidates 2026-03-20T14:44:35,910 Collecting spatialformer==0.1.5 2026-03-20T14:44:35,913 Created temporary directory: /tmp/pip-unpack-f3e1oj_2 2026-03-20T14:44:36,128 Downloading spatialformer-0.1.5.tar.gz (3.9 MB) 2026-03-20T14:44:37,481 Added spatialformer==0.1.5 from https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz to build tracker '/tmp/pip-build-tracker-xb6hcfa4' 2026-03-20T14:44:37,483 Running setup.py (path:/tmp/pip-wheel-uith1im2/spatialformer_1f72a2738f234e2ea77059e17290de1b/setup.py) egg_info for package spatialformer 2026-03-20T14:44:37,484 Created temporary directory: /tmp/pip-pip-egg-info-lvktf7v9 2026-03-20T14:44:37,484 Preparing metadata (setup.py): started 2026-03-20T14:44:37,486 Running command python setup.py egg_info 2026-03-20T14:44:38,391 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-20T14:44:38,391 !! 2026-03-20T14:44:38,392 ******************************************************************************** 2026-03-20T14:44:38,392 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-20T14:44:38,393 License :: OSI Approved :: MIT License 2026-03-20T14:44:38,394 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:44:38,395 ******************************************************************************** 2026-03-20T14:44:38,396 !! 2026-03-20T14:44:38,396 self._finalize_license_expression() 2026-03-20T14:44:38,421 running egg_info 2026-03-20T14:44:38,448 creating /tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info 2026-03-20T14:44:38,449 writing /tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/PKG-INFO 2026-03-20T14:44:38,454 writing dependency_links to /tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/dependency_links.txt 2026-03-20T14:44:38,457 writing requirements to /tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/requires.txt 2026-03-20T14:44:38,458 writing top-level names to /tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/top_level.txt 2026-03-20T14:44:38,460 writing manifest file '/tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:44:38,599 reading manifest file '/tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:44:38,601 reading manifest template 'MANIFEST.in' 2026-03-20T14:44:38,603 warning: no files found matching 'spatialformer/spatial_embeddings/*.json' 2026-03-20T14:44:38,604 adding license file 'LICENSE' 2026-03-20T14:44:38,607 writing manifest file '/tmp/pip-pip-egg-info-lvktf7v9/spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:44:38,716 Preparing metadata (setup.py): finished with status 'done' 2026-03-20T14:44:38,720 Source in /tmp/pip-wheel-uith1im2/spatialformer_1f72a2738f234e2ea77059e17290de1b has version 0.1.5, which satisfies requirement spatialformer==0.1.5 from https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz 2026-03-20T14:44:38,721 Removed spatialformer==0.1.5 from https://files.pythonhosted.org/packages/88/47/927779624f4a903cac77c86042869bc6686ada6f83d6581c6a5a31d4aff0/spatialformer-0.1.5.tar.gz from build tracker '/tmp/pip-build-tracker-xb6hcfa4' 2026-03-20T14:44:38,727 Created temporary directory: /tmp/pip-unpack-49o31_w6 2026-03-20T14:44:38,727 Building wheels for collected packages: spatialformer 2026-03-20T14:44:38,732 Created temporary directory: /tmp/pip-wheel-hqt0ou5c 2026-03-20T14:44:38,733 Building wheel for spatialformer (setup.py): started 2026-03-20T14:44:38,734 Destination directory: /tmp/pip-wheel-hqt0ou5c 2026-03-20T14:44:38,735 Running command python setup.py bdist_wheel 2026-03-20T14:44:39,569 /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-20T14:44:39,569 !! 2026-03-20T14:44:39,570 ******************************************************************************** 2026-03-20T14:44:39,571 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-20T14:44:39,572 License :: OSI Approved :: MIT License 2026-03-20T14:44:39,573 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-20T14:44:39,574 ******************************************************************************** 2026-03-20T14:44:39,575 !! 2026-03-20T14:44:39,576 self._finalize_license_expression() 2026-03-20T14:44:39,576 running bdist_wheel 2026-03-20T14:44:39,702 running build 2026-03-20T14:44:39,703 running build_py 2026-03-20T14:44:39,735 creating build/lib/spatialformer 2026-03-20T14:44:39,737 copying spatialformer/data_loader.py -> build/lib/spatialformer 2026-03-20T14:44:39,740 copying spatialformer/utils.py -> build/lib/spatialformer 2026-03-20T14:44:39,743 copying spatialformer/processor.py -> build/lib/spatialformer 2026-03-20T14:44:39,745 copying spatialformer/GraphSAGE.py -> build/lib/spatialformer 2026-03-20T14:44:39,748 copying spatialformer/graphsage.py -> build/lib/spatialformer 2026-03-20T14:44:39,750 copying spatialformer/train.py -> build/lib/spatialformer 2026-03-20T14:44:39,752 copying spatialformer/__init__.py -> build/lib/spatialformer 2026-03-20T14:44:39,755 creating build/lib/spatialformer/config 2026-03-20T14:44:39,756 copying spatialformer/config/__init__.py -> build/lib/spatialformer/config 2026-03-20T14:44:39,758 creating build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,759 copying spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,761 copying spatialformer/gene_gene_calculation/mask_dataset.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,764 copying spatialformer/gene_gene_calculation/process.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,766 copying spatialformer/gene_gene_calculation/h5toloader.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,769 copying spatialformer/gene_gene_calculation/__init__.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,770 copying spatialformer/gene_gene_calculation/build_h5ad.py -> build/lib/spatialformer/gene_gene_calculation 2026-03-20T14:44:39,773 creating build/lib/spatialformer/model 2026-03-20T14:44:39,774 copying spatialformer/model/settings.py -> build/lib/spatialformer/model 2026-03-20T14:44:39,776 copying spatialformer/model/Spaformer.py -> build/lib/spatialformer/model 2026-03-20T14:44:39,778 copying spatialformer/model/Spaformer_pair.py -> build/lib/spatialformer/model 2026-03-20T14:44:39,782 copying spatialformer/model/model.py -> build/lib/spatialformer/model 2026-03-20T14:44:39,784 copying spatialformer/model/__init__.py -> build/lib/spatialformer/model 2026-03-20T14:44:39,786 creating build/lib/spatialformer/tools 2026-03-20T14:44:39,787 copying spatialformer/tools/get_embeddings.py -> build/lib/spatialformer/tools 2026-03-20T14:44:39,791 copying spatialformer/tools/__init__.py -> build/lib/spatialformer/tools 2026-03-20T14:44:39,793 creating build/lib/spatialformer/preprocess 2026-03-20T14:44:39,794 copying spatialformer/preprocess/find_gene_interaction.py -> build/lib/spatialformer/preprocess 2026-03-20T14:44:39,797 copying spatialformer/preprocess/__init__.py -> build/lib/spatialformer/preprocess 2026-03-20T14:44:39,799 creating build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,800 copying spatialformer/tokenizer/__init__.py -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,802 creating build/lib/spatialformer/spatial_embeddings 2026-03-20T14:44:39,803 copying spatialformer/spatial_embeddings/__init__.py -> build/lib/spatialformer/spatial_embeddings 2026-03-20T14:44:39,805 creating build/lib/spatialformer/dataloader 2026-03-20T14:44:39,806 copying spatialformer/dataloader/__init__.py -> build/lib/spatialformer/dataloader 2026-03-20T14:44:39,808 copying spatialformer/dataloader/dataloader_paired.py -> build/lib/spatialformer/dataloader 2026-03-20T14:44:39,812 creating build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,813 copying spatialformer/model/submodules/layer_modules.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,815 copying spatialformer/model/submodules/masked_conv.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,817 copying spatialformer/model/submodules/modules.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,819 copying spatialformer/model/submodules/alibi.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,821 copying spatialformer/model/submodules/activations.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,824 copying spatialformer/model/submodules/flash_attention2.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,827 copying spatialformer/model/submodules/__init__.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,829 copying spatialformer/model/submodules/masked_batchnorm.py -> build/lib/spatialformer/model/submodules 2026-03-20T14:44:39,830 running egg_info 2026-03-20T14:44:39,857 writing spatialformer.egg-info/PKG-INFO 2026-03-20T14:44:39,861 writing dependency_links to spatialformer.egg-info/dependency_links.txt 2026-03-20T14:44:39,865 writing requirements to spatialformer.egg-info/requires.txt 2026-03-20T14:44:39,866 writing top-level names to spatialformer.egg-info/top_level.txt 2026-03-20T14:44:39,907 reading manifest file 'spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:44:39,911 reading manifest template 'MANIFEST.in' 2026-03-20T14:44:39,913 warning: no files found matching 'spatialformer/spatial_embeddings/*.json' 2026-03-20T14:44:39,914 adding license file 'LICENSE' 2026-03-20T14:44:39,918 writing manifest file 'spatialformer.egg-info/SOURCES.txt' 2026-03-20T14:44:39,926 copying spatialformer/config/_config_fine_tune_probe.json -> build/lib/spatialformer/config 2026-03-20T14:44:39,929 copying spatialformer/config/_config_graphsave.json -> build/lib/spatialformer/config 2026-03-20T14:44:39,931 copying spatialformer/config/_config_train.json -> build/lib/spatialformer/config 2026-03-20T14:44:39,933 copying spatialformer/config/_config_train_large_pair.json -> build/lib/spatialformer/config 2026-03-20T14:44:39,935 copying spatialformer/config/_config_train_large_single.json -> build/lib/spatialformer/config 2026-03-20T14:44:39,936 copying spatialformer/tokenizer/token.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,939 copying spatialformer/tokenizer/tokenv2.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,943 copying spatialformer/tokenizer/tokenv3.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,947 copying spatialformer/tokenizer/tokenv4.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,950 copying spatialformer/tokenizer/tokenv5.json -> build/lib/spatialformer/tokenizer 2026-03-20T14:44:39,954 copying spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/lib/spatialformer/spatial_embeddings 2026-03-20T14:44:40,049 /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. 2026-03-20T14:44:40,050 !! 2026-03-20T14:44:40,051 ******************************************************************************** 2026-03-20T14:44:40,051 Please avoid running ``setup.py`` directly. 2026-03-20T14:44:40,052 Instead, use pypa/build, pypa/installer or other 2026-03-20T14:44:40,053 standards-based tools. 2026-03-20T14:44:40,054 This deprecation is overdue, please update your project and remove deprecated 2026-03-20T14:44:40,054 calls to avoid build errors in the future. 2026-03-20T14:44:40,056 See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. 2026-03-20T14:44:40,056 ******************************************************************************** 2026-03-20T14:44:40,057 !! 2026-03-20T14:44:40,058 self.initialize_options() 2026-03-20T14:44:40,077 installing to build/bdist.linux-armv7l/wheel 2026-03-20T14:44:40,078 running install 2026-03-20T14:44:40,101 running install_lib 2026-03-20T14:44:40,127 creating build/bdist.linux-armv7l/wheel 2026-03-20T14:44:40,130 creating build/bdist.linux-armv7l/wheel/spatialformer 2026-03-20T14:44:40,131 copying build/lib/spatialformer/data_loader.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,134 creating build/bdist.linux-armv7l/wheel/spatialformer/config 2026-03-20T14:44:40,135 copying build/lib/spatialformer/config/_config_train_large_pair.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,137 copying build/lib/spatialformer/config/_config_train_large_single.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,139 copying build/lib/spatialformer/config/_config_fine_tune_probe.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,141 copying build/lib/spatialformer/config/_config_train.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,143 copying build/lib/spatialformer/config/_config_graphsave.json -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,144 copying build/lib/spatialformer/config/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/config 2026-03-20T14:44:40,146 copying build/lib/spatialformer/utils.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,149 creating build/bdist.linux-armv7l/wheel/spatialformer/gene_gene_calculation 2026-03-20T14:44:40,150 copying build/lib/spatialformer/gene_gene_calculation/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,153 copying build/lib/spatialformer/gene_gene_calculation/mask_dataset.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,155 copying build/lib/spatialformer/gene_gene_calculation/process.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,157 copying build/lib/spatialformer/gene_gene_calculation/h5toloader.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,160 copying build/lib/spatialformer/gene_gene_calculation/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,161 copying build/lib/spatialformer/gene_gene_calculation/build_h5ad.py -> build/bdist.linux-armv7l/wheel/./spatialformer/gene_gene_calculation 2026-03-20T14:44:40,164 creating build/bdist.linux-armv7l/wheel/spatialformer/model 2026-03-20T14:44:40,165 copying build/lib/spatialformer/model/settings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:44:40,168 creating build/bdist.linux-armv7l/wheel/spatialformer/model/submodules 2026-03-20T14:44:40,169 copying build/lib/spatialformer/model/submodules/layer_modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,171 copying build/lib/spatialformer/model/submodules/masked_conv.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,173 copying build/lib/spatialformer/model/submodules/modules.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,176 copying build/lib/spatialformer/model/submodules/alibi.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,179 copying build/lib/spatialformer/model/submodules/activations.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,181 copying build/lib/spatialformer/model/submodules/flash_attention2.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,185 copying build/lib/spatialformer/model/submodules/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,187 copying build/lib/spatialformer/model/submodules/masked_batchnorm.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model/submodules 2026-03-20T14:44:40,190 copying build/lib/spatialformer/model/Spaformer.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:44:40,192 copying build/lib/spatialformer/model/Spaformer_pair.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:44:40,196 copying build/lib/spatialformer/model/model.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:44:40,199 copying build/lib/spatialformer/model/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/model 2026-03-20T14:44:40,200 copying build/lib/spatialformer/processor.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,202 copying build/lib/spatialformer/GraphSAGE.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,206 creating build/bdist.linux-armv7l/wheel/spatialformer/tools 2026-03-20T14:44:40,207 copying build/lib/spatialformer/tools/get_embeddings.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools 2026-03-20T14:44:40,210 copying build/lib/spatialformer/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tools 2026-03-20T14:44:40,212 copying build/lib/spatialformer/graphsage.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,214 copying build/lib/spatialformer/train.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,218 creating build/bdist.linux-armv7l/wheel/spatialformer/preprocess 2026-03-20T14:44:40,220 copying build/lib/spatialformer/preprocess/find_gene_interaction.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess 2026-03-20T14:44:40,223 copying build/lib/spatialformer/preprocess/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/preprocess 2026-03-20T14:44:40,225 creating build/bdist.linux-armv7l/wheel/spatialformer/tokenizer 2026-03-20T14:44:40,227 copying build/lib/spatialformer/tokenizer/tokenv2.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,231 copying build/lib/spatialformer/tokenizer/tokenv4.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,234 copying build/lib/spatialformer/tokenizer/token.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,236 copying build/lib/spatialformer/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,238 copying build/lib/spatialformer/tokenizer/tokenv5.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,243 copying build/lib/spatialformer/tokenizer/tokenv3.json -> build/bdist.linux-armv7l/wheel/./spatialformer/tokenizer 2026-03-20T14:44:40,246 copying build/lib/spatialformer/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer 2026-03-20T14:44:40,248 creating build/bdist.linux-armv7l/wheel/spatialformer/spatial_embeddings 2026-03-20T14:44:40,250 copying build/lib/spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings 2026-03-20T14:44:40,320 copying build/lib/spatialformer/spatial_embeddings/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/spatial_embeddings 2026-03-20T14:44:40,322 creating build/bdist.linux-armv7l/wheel/spatialformer/dataloader 2026-03-20T14:44:40,323 copying build/lib/spatialformer/dataloader/__init__.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader 2026-03-20T14:44:40,326 copying build/lib/spatialformer/dataloader/dataloader_paired.py -> build/bdist.linux-armv7l/wheel/./spatialformer/dataloader 2026-03-20T14:44:40,329 running install_egg_info 2026-03-20T14:44:40,362 Copying spatialformer.egg-info to build/bdist.linux-armv7l/wheel/./spatialformer-0.1.5-py3.11.egg-info 2026-03-20T14:44:40,376 running install_scripts 2026-03-20T14:44:40,388 creating build/bdist.linux-armv7l/wheel/spatialformer-0.1.5.dist-info/WHEEL 2026-03-20T14:44:40,391 creating '/tmp/pip-wheel-hqt0ou5c/spatialformer-0.1.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-20T14:44:40,396 adding 'spatialformer/GraphSAGE.py' 2026-03-20T14:44:40,398 adding 'spatialformer/__init__.py' 2026-03-20T14:44:40,402 adding 'spatialformer/data_loader.py' 2026-03-20T14:44:40,405 adding 'spatialformer/graphsage.py' 2026-03-20T14:44:40,407 adding 'spatialformer/processor.py' 2026-03-20T14:44:40,409 adding 'spatialformer/train.py' 2026-03-20T14:44:40,415 adding 'spatialformer/utils.py' 2026-03-20T14:44:40,418 adding 'spatialformer/config/__init__.py' 2026-03-20T14:44:40,420 adding 'spatialformer/config/_config_fine_tune_probe.json' 2026-03-20T14:44:40,421 adding 'spatialformer/config/_config_graphsave.json' 2026-03-20T14:44:40,422 adding 'spatialformer/config/_config_train.json' 2026-03-20T14:44:40,424 adding 'spatialformer/config/_config_train_large_pair.json' 2026-03-20T14:44:40,426 adding 'spatialformer/config/_config_train_large_single.json' 2026-03-20T14:44:40,428 adding 'spatialformer/dataloader/__init__.py' 2026-03-20T14:44:40,437 adding 'spatialformer/dataloader/dataloader_paired.py' 2026-03-20T14:44:40,440 adding 'spatialformer/gene_gene_calculation/__init__.py' 2026-03-20T14:44:40,441 adding 'spatialformer/gene_gene_calculation/build_h5ad.py' 2026-03-20T14:44:40,444 adding 'spatialformer/gene_gene_calculation/find_gene_interaction.py' 2026-03-20T14:44:40,446 adding 'spatialformer/gene_gene_calculation/h5toloader.py' 2026-03-20T14:44:40,449 adding 'spatialformer/gene_gene_calculation/mask_dataset.py' 2026-03-20T14:44:40,451 adding 'spatialformer/gene_gene_calculation/process.py' 2026-03-20T14:44:40,455 adding 'spatialformer/model/Spaformer.py' 2026-03-20T14:44:40,461 adding 'spatialformer/model/Spaformer_pair.py' 2026-03-20T14:44:40,463 adding 'spatialformer/model/__init__.py' 2026-03-20T14:44:40,465 adding 'spatialformer/model/model.py' 2026-03-20T14:44:40,466 adding 'spatialformer/model/settings.py' 2026-03-20T14:44:40,468 adding 'spatialformer/model/submodules/__init__.py' 2026-03-20T14:44:40,469 adding 'spatialformer/model/submodules/activations.py' 2026-03-20T14:44:40,470 adding 'spatialformer/model/submodules/alibi.py' 2026-03-20T14:44:40,474 adding 'spatialformer/model/submodules/flash_attention2.py' 2026-03-20T14:44:40,476 adding 'spatialformer/model/submodules/layer_modules.py' 2026-03-20T14:44:40,477 adding 'spatialformer/model/submodules/masked_batchnorm.py' 2026-03-20T14:44:40,479 adding 'spatialformer/model/submodules/masked_conv.py' 2026-03-20T14:44:40,481 adding 'spatialformer/model/submodules/modules.py' 2026-03-20T14:44:40,483 adding 'spatialformer/preprocess/__init__.py' 2026-03-20T14:44:40,486 adding 'spatialformer/preprocess/find_gene_interaction.py' 2026-03-20T14:44:40,488 adding 'spatialformer/spatial_embeddings/__init__.py' 2026-03-20T14:44:41,106 adding 'spatialformer/spatial_embeddings/gene_embeddings_GraphSAGE_pandavid.pkl' 2026-03-20T14:44:41,133 adding 'spatialformer/tokenizer/__init__.py' 2026-03-20T14:44:41,135 adding 'spatialformer/tokenizer/token.json' 2026-03-20T14:44:41,159 adding 'spatialformer/tokenizer/tokenv2.json' 2026-03-20T14:44:41,167 adding 'spatialformer/tokenizer/tokenv3.json' 2026-03-20T14:44:41,175 adding 'spatialformer/tokenizer/tokenv4.json' 2026-03-20T14:44:41,199 adding 'spatialformer/tokenizer/tokenv5.json' 2026-03-20T14:44:41,201 adding 'spatialformer/tools/__init__.py' 2026-03-20T14:44:41,208 adding 'spatialformer/tools/get_embeddings.py' 2026-03-20T14:44:41,210 adding 'spatialformer-0.1.5.dist-info/licenses/LICENSE' 2026-03-20T14:44:41,211 adding 'spatialformer-0.1.5.dist-info/METADATA' 2026-03-20T14:44:41,213 adding 'spatialformer-0.1.5.dist-info/WHEEL' 2026-03-20T14:44:41,214 adding 'spatialformer-0.1.5.dist-info/top_level.txt' 2026-03-20T14:44:41,215 adding 'spatialformer-0.1.5.dist-info/RECORD' 2026-03-20T14:44:41,271 removing build/bdist.linux-armv7l/wheel 2026-03-20T14:44:41,396 Building wheel for spatialformer (setup.py): finished with status 'done' 2026-03-20T14:44:41,438 Created wheel for spatialformer: filename=spatialformer-0.1.5-py3-none-any.whl size=3936221 sha256=9037616ea6bfda0e1e8d007b3a84de502ca4516fb1e69ca38048c958990de411 2026-03-20T14:44:41,439 Stored in directory: /tmp/pip-ephem-wheel-cache-d84m4n_p/wheels/09/94/4c/7d594040613f03e94724a59b806ef2c20dc1fb658be9c4fd9e 2026-03-20T14:44:41,452 Successfully built spatialformer 2026-03-20T14:44:41,563 Removed build tracker: '/tmp/pip-build-tracker-xb6hcfa4'