2026-03-21T02:42:54,749 Created temporary directory: /tmp/pip-ephem-wheel-cache-vgg95bap
2026-03-21T02:42:54,751 Created temporary directory: /tmp/pip-build-tracker-ayvogq1k
2026-03-21T02:42:54,751 Initialized build tracking at /tmp/pip-build-tracker-ayvogq1k
2026-03-21T02:42:54,752 Created build tracker: /tmp/pip-build-tracker-ayvogq1k
2026-03-21T02:42:54,752 Entered build tracker: /tmp/pip-build-tracker-ayvogq1k
2026-03-21T02:42:54,753 Created temporary directory: /tmp/pip-wheel-kabq5_yj
2026-03-21T02:42:54,756 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-21T02:42:54,758 Created temporary directory: /tmp/pip-ephem-wheel-cache-vg8ppbdg
2026-03-21T02:42:54,780 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-21T02:42:54,783 2 location(s) to search for versions of ilus:
2026-03-21T02:42:54,783 * https://pypi.org/simple/ilus/
2026-03-21T02:42:54,783 * https://www.piwheels.org/simple/ilus/
2026-03-21T02:42:54,784 Fetching project page and analyzing links: https://pypi.org/simple/ilus/
2026-03-21T02:42:54,785 Getting page https://pypi.org/simple/ilus/
2026-03-21T02:42:54,786 Found index url https://pypi.org/simple
2026-03-21T02:42:55,002 Fetched page https://pypi.org/simple/ilus/ as application/vnd.pypi.simple.v1+json
2026-03-21T02:42:55,005   Found link https://files.pythonhosted.org/packages/8e/55/649bd50aabb4f4b880b612986acaa44a19b692302b7a5a922def75599f5c/ilus-0.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 0.1.0
2026-03-21T02:42:55,006   Found link https://files.pythonhosted.org/packages/64/d1/c750f25d5de6a9fc5a603feed5c7059c5c7f1aa6809fa9c58e1381be2ca2/ilus-1.0.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.0
2026-03-21T02:42:55,007   Found link https://files.pythonhosted.org/packages/c8/bf/3716a026b6ebcb7028105356ac7922739ab7872a63eb43f7dfd886c5c5db/ilus-1.0.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.1
2026-03-21T02:42:55,007   Found link https://files.pythonhosted.org/packages/33/4a/0974529431296c5238c63eb91442bbe1176b16f82ce971cf237dac4c8627/ilus-1.0.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.2
2026-03-21T02:42:55,008   Found link https://files.pythonhosted.org/packages/5e/1b/630c5a16f2e4a5e5a4c28e15a20f787daf1e0b0472d1a3439f4d18fb4871/ilus-1.0.3.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.3
2026-03-21T02:42:55,008   Found link https://files.pythonhosted.org/packages/7d/90/c6c93779518796a59e0022ea5177b93bf0552e83160e9d1e8fafe34dfdec/ilus-1.0.4.tar.gz (from https://pypi.org/simple/ilus/), version: 1.0.4
2026-03-21T02:42:55,009   Found link https://files.pythonhosted.org/packages/f2/91/43458918520aa40a030b566ce3596210a4d855a84e3d15ddaa01830a0e8d/ilus-1.1.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.0
2026-03-21T02:42:55,010   Found link https://files.pythonhosted.org/packages/ef/90/20e1da660596a5f39ff1da1bd0ba4a484bb229ace3bfc77b0169d1636acd/ilus-1.1.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.1.1
2026-03-21T02:42:55,010   Found link https://files.pythonhosted.org/packages/0d/45/799c5f23cf1dedc8a7fa996f1d091a4d5e0f8b62eba461da5e60c50ad2eb/ilus-1.2.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.1
2026-03-21T02:42:55,011   Found link https://files.pythonhosted.org/packages/33/d9/1e1d7c5aa517e4648fbdfc9be2752fbf2424608e134845637241833f4f58/ilus-1.2.2.tar.gz (from https://pypi.org/simple/ilus/), version: 1.2.2
2026-03-21T02:42:55,012   Found link https://files.pythonhosted.org/packages/02/09/b4d9c429ed8e64f724b62efb78121803f65a3f90e02d15b45873166b1ccb/ilus-1.3.0.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.0
2026-03-21T02:42:55,012   Found link https://files.pythonhosted.org/packages/37/55/b19f8e151ea4fa9c133ba6d2c24943b15151b024b5bc7061e697b735e684/ilus-1.3.1.tar.gz (from https://pypi.org/simple/ilus/), version: 1.3.1
2026-03-21T02:42:55,013   Found link https://files.pythonhosted.org/packages/ca/da/e63844784ebb375cd530002de641ccc8a2abd8e95fa441516118c2bf1dea/ilus-1.3.2.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 1.3.2
2026-03-21T02:42:55,015   Found link https://files.pythonhosted.org/packages/a9/f5/39b3283f53318f349c8b722df8c91f6e316cd8ba20d8393a851118133d5a/ilus-2.0.0.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.0
2026-03-21T02:42:55,015   Found link https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz (from https://pypi.org/simple/ilus/) (requires-python:>=3.5), version: 2.0.1
2026-03-21T02:42:55,016 Fetching project page and analyzing links: https://www.piwheels.org/simple/ilus/
2026-03-21T02:42:55,017 Getting page https://www.piwheels.org/simple/ilus/
2026-03-21T02:42:55,018 Found index url https://www.piwheels.org/simple
2026-03-21T02:42:55,182 Fetched page https://www.piwheels.org/simple/ilus/ as text/html
2026-03-21T02:42:55,186   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-2.0.0-py3-none-any.whl#sha256=3ff0bdf5861ce49860d50b14e8c41b3662bc37b4313e3bc43116854776dc9382 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-03-21T02:42:55,187   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.2-py3-none-any.whl#sha256=6d315e8e8de0712c852788a1f124af02f5ccd5763b5d7210b937466f1a466365 (from https://www.piwheels.org/simple/ilus/) (requires-python:>=3.5)
2026-03-21T02:42:55,188   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.1-py3-none-any.whl#sha256=95994f378ecd3614fbaa5acf6972cc8bfaca26a138d2bb6953332d7e1d188abe (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,188   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.3.0-py3-none-any.whl#sha256=86f3cfa3b4075f80f64038efd70c6b4dcc9b2e92dd73740e90c438fbf17e6402 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,189   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.2-py3-none-any.whl#sha256=57d5cc7a4de501b9759687f303a8ce24dee56a6bf3f469cdf8f34eedfbd5e3d6 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,189   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.2.1-py3-none-any.whl#sha256=b35d6734ffaccb93bea222efb586b94c5e948e69b9410862e345c77db351eedb (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,190   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.1-py3-none-any.whl#sha256=e6c1337f5257980949564552b79bff1f389200cf3ad322a5f849728263b321f4 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,190   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.1.0-py3-none-any.whl#sha256=d696434a6d520599e55cead1b1aed46c68b4068394416117d1cadd7f36db6c7d (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,191   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.4-py3-none-any.whl#sha256=e882e54d1fda965bbe97cd5c70a977824f1d81e79091d8679ea47c84bdd167f6 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,191   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.2-py3-none-any.whl#sha256=d390a4ba1fee50a6e7041c77c317907d02dc3a78aa4f6c43699ca60147b43161 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,192   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.1-py3-none-any.whl#sha256=b1787a95b35aa0f798fa13b7407a034445b46252d3453354d569d03a9bd458ce (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,193   Skipping link: No binaries permitted for ilus: https://archive1.piwheels.org/simple/ilus/ilus-1.0.0-py3-none-any.whl#sha256=f6edd0ca8dd180f27744489a2d97500ea9bbf8a31d1fd67abd9eb7b33fc5e275 (from https://www.piwheels.org/simple/ilus/)
2026-03-21T02:42:55,193 Skipping link: not a file: https://www.piwheels.org/simple/ilus/
2026-03-21T02:42:55,194 Skipping link: not a file: https://pypi.org/simple/ilus/
2026-03-21T02:42:55,216 Given no hashes to check 1 links for project 'ilus': discarding no candidates
2026-03-21T02:42:55,236 Collecting ilus==2.0.1
2026-03-21T02:42:55,238   Created temporary directory: /tmp/pip-unpack-zb3oe6pm
2026-03-21T02:42:55,370   Downloading ilus-2.0.1.tar.gz (58 kB)
2026-03-21T02:42:55,483   Added ilus==2.0.1 from https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz to build tracker '/tmp/pip-build-tracker-ayvogq1k'
2026-03-21T02:42:55,485   Running setup.py (path:/tmp/pip-wheel-kabq5_yj/ilus_b4a4c2ab3e214cc0a9d145c9d46d06d6/setup.py) egg_info for package ilus
2026-03-21T02:42:55,486   Created temporary directory: /tmp/pip-pip-egg-info-2tfx11lt
2026-03-21T02:42:55,486   Preparing metadata (setup.py): started
2026-03-21T02:42:55,487   Running command python setup.py egg_info
2026-03-21T02:42:55,518   Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/cntimer.pth:

2026-03-21T02:42:55,557     Traceback (most recent call last):
2026-03-21T02:42:55,558       File "<frozen site>", line 192, in addpackage
2026-03-21T02:42:55,558       File "<string>", line 1, in <module>
2026-03-21T02:42:55,559     ModuleNotFoundError: No module named 'cntimer'

2026-03-21T02:42:55,560   Remainder of file ignored
2026-03-21T02:42:56,355   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-21T02:42:56,356   !!

2026-03-21T02:42:56,357           ********************************************************************************
2026-03-21T02:42:56,358           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-21T02:42:56,359           License :: OSI Approved :: BSD License

2026-03-21T02:42:56,360           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-21T02:42:56,360           ********************************************************************************

2026-03-21T02:42:56,362   !!
2026-03-21T02:42:56,362     self._finalize_license_expression()
2026-03-21T02:42:56,385   running egg_info
2026-03-21T02:42:56,411   creating /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info
2026-03-21T02:42:56,412   writing /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/PKG-INFO
2026-03-21T02:42:56,416   writing dependency_links to /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/dependency_links.txt
2026-03-21T02:42:56,418   writing entry points to /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/entry_points.txt
2026-03-21T02:42:56,419   writing requirements to /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/requires.txt
2026-03-21T02:42:56,420   writing top-level names to /tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/top_level.txt
2026-03-21T02:42:56,422   writing manifest file '/tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/SOURCES.txt'
2026-03-21T02:42:56,516   reading manifest file '/tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/SOURCES.txt'
2026-03-21T02:42:56,517   adding license file 'LICENSE'
2026-03-21T02:42:56,520   writing manifest file '/tmp/pip-pip-egg-info-2tfx11lt/ilus.egg-info/SOURCES.txt'
2026-03-21T02:42:56,627   Preparing metadata (setup.py): finished with status 'done'
2026-03-21T02:42:56,634   Source in /tmp/pip-wheel-kabq5_yj/ilus_b4a4c2ab3e214cc0a9d145c9d46d06d6 has version 2.0.1, which satisfies requirement ilus==2.0.1 from https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz
2026-03-21T02:42:56,635   Removed ilus==2.0.1 from https://files.pythonhosted.org/packages/6e/32/1e25753cdf1bf724314a4d13419497c220eb2be8dad9fc44521c856de07e/ilus-2.0.1.tar.gz from build tracker '/tmp/pip-build-tracker-ayvogq1k'
2026-03-21T02:42:56,644 Created temporary directory: /tmp/pip-unpack-soptqqu1
2026-03-21T02:42:56,645 Building wheels for collected packages: ilus
2026-03-21T02:42:56,650   Created temporary directory: /tmp/pip-wheel-2_1z4e5j
2026-03-21T02:42:56,650   Building wheel for ilus (setup.py): started
2026-03-21T02:42:56,651   Destination directory: /tmp/pip-wheel-2_1z4e5j
2026-03-21T02:42:56,652   Running command python setup.py bdist_wheel
2026-03-21T02:42:56,682   Error processing line 1 of /home/piwheels/.local/lib/python3.11/site-packages/cntimer.pth:

2026-03-21T02:42:56,722     Traceback (most recent call last):
2026-03-21T02:42:56,722       File "<frozen site>", line 192, in addpackage
2026-03-21T02:42:56,723       File "<string>", line 1, in <module>
2026-03-21T02:42:56,723     ModuleNotFoundError: No module named 'cntimer'

2026-03-21T02:42:56,724   Remainder of file ignored
2026-03-21T02:42:57,488   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-21T02:42:57,488   !!

2026-03-21T02:42:57,490           ********************************************************************************
2026-03-21T02:42:57,490           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-21T02:42:57,491           License :: OSI Approved :: BSD License

2026-03-21T02:42:57,492           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-21T02:42:57,493           ********************************************************************************

2026-03-21T02:42:57,494   !!
2026-03-21T02:42:57,494     self._finalize_license_expression()
2026-03-21T02:42:57,495   running bdist_wheel
2026-03-21T02:42:57,621   running build
2026-03-21T02:42:57,622   running build_py
2026-03-21T02:42:57,654   creating build/lib/ilus
2026-03-21T02:42:57,656   copying ilus/__init__.py -> build/lib/ilus
2026-03-21T02:42:57,658   copying ilus/main.py -> build/lib/ilus
2026-03-21T02:42:57,661   creating build/lib/ilus/modules
2026-03-21T02:42:57,662   copying ilus/modules/bwa.py -> build/lib/ilus/modules
2026-03-21T02:42:57,664   copying ilus/modules/__init__.py -> build/lib/ilus/modules
2026-03-21T02:42:57,665   copying ilus/modules/sentieon.py -> build/lib/ilus/modules
2026-03-21T02:42:57,668   copying ilus/modules/bcftools.py -> build/lib/ilus/modules
2026-03-21T02:42:57,670   copying ilus/modules/gatk.py -> build/lib/ilus/modules
2026-03-21T02:42:57,672   copying ilus/modules/soapnuke.py -> build/lib/ilus/modules
2026-03-21T02:42:57,675   creating build/lib/ilus/pipeline
2026-03-21T02:42:57,676   copying ilus/pipeline/_command_args.py -> build/lib/ilus/pipeline
2026-03-21T02:42:57,678   copying ilus/pipeline/__init__.py -> build/lib/ilus/pipeline
2026-03-21T02:42:57,680   copying ilus/pipeline/_germline_short_variant_discovery.py -> build/lib/ilus/pipeline
2026-03-21T02:42:57,683   creating build/lib/ilus/launch
2026-03-21T02:42:57,684   copying ilus/launch/do.py -> build/lib/ilus/launch
2026-03-21T02:42:57,686   copying ilus/launch/__init__.py -> build/lib/ilus/launch
2026-03-21T02:42:57,688   copying ilus/launch/runfunction.py -> build/lib/ilus/launch
2026-03-21T02:42:57,691   creating build/lib/ilus/modules/utils
2026-03-21T02:42:57,692   copying ilus/modules/utils/_split_jobs.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,694   copying ilus/modules/utils/_utils.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,696   copying ilus/modules/utils/__init__.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,698   copying ilus/modules/utils/_check_config.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,700   copying ilus/modules/utils/_check_jobs.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,702   copying ilus/modules/utils/_check_input.py -> build/lib/ilus/modules/utils
2026-03-21T02:42:57,704   creating build/lib/ilus/modules/summary
2026-03-21T02:42:57,705   copying ilus/modules/summary/bam.py -> build/lib/ilus/modules/summary
2026-03-21T02:42:57,707   copying ilus/modules/summary/__init__.py -> build/lib/ilus/modules/summary
2026-03-21T02:42:57,708   running egg_info
2026-03-21T02:42:57,736   writing ilus.egg-info/PKG-INFO
2026-03-21T02:42:57,740   writing dependency_links to ilus.egg-info/dependency_links.txt
2026-03-21T02:42:57,741   writing entry points to ilus.egg-info/entry_points.txt
2026-03-21T02:42:57,742   writing requirements to ilus.egg-info/requires.txt
2026-03-21T02:42:57,743   writing top-level names to ilus.egg-info/top_level.txt
2026-03-21T02:42:57,777   reading manifest file 'ilus.egg-info/SOURCES.txt'
2026-03-21T02:42:57,780   adding license file 'LICENSE'
2026-03-21T02:42:57,784   writing manifest file 'ilus.egg-info/SOURCES.txt'
2026-03-21T02:42:57,816   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-03-21T02:42:57,817   !!

2026-03-21T02:42:57,818           ********************************************************************************
2026-03-21T02:42:57,818           Please avoid running ``setup.py`` directly.
2026-03-21T02:42:57,819           Instead, use pypa/build, pypa/installer or other
2026-03-21T02:42:57,819           standards-based tools.

2026-03-21T02:42:57,820           This deprecation is overdue, please update your project and remove deprecated
2026-03-21T02:42:57,821           calls to avoid build errors in the future.

2026-03-21T02:42:57,822           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-03-21T02:42:57,822           ********************************************************************************

2026-03-21T02:42:57,823   !!
2026-03-21T02:42:57,824     self.initialize_options()
2026-03-21T02:42:57,843   installing to build/bdist.linux-armv7l/wheel
2026-03-21T02:42:57,844   running install
2026-03-21T02:42:57,867   running install_lib
2026-03-21T02:42:57,894   creating build/bdist.linux-armv7l/wheel
2026-03-21T02:42:57,896   creating build/bdist.linux-armv7l/wheel/ilus
2026-03-21T02:42:57,897   copying build/lib/ilus/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-03-21T02:42:57,900   creating build/bdist.linux-armv7l/wheel/ilus/modules
2026-03-21T02:42:57,901   copying build/lib/ilus/modules/bwa.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,903   copying build/lib/ilus/modules/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,904   copying build/lib/ilus/modules/sentieon.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,906   copying build/lib/ilus/modules/bcftools.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,908   copying build/lib/ilus/modules/gatk.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,911   creating build/bdist.linux-armv7l/wheel/ilus/modules/utils
2026-03-21T02:42:57,912   copying build/lib/ilus/modules/utils/_split_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,914   copying build/lib/ilus/modules/utils/_utils.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,916   copying build/lib/ilus/modules/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,918   copying build/lib/ilus/modules/utils/_check_config.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,920   copying build/lib/ilus/modules/utils/_check_jobs.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,922   copying build/lib/ilus/modules/utils/_check_input.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/utils
2026-03-21T02:42:57,924   copying build/lib/ilus/modules/soapnuke.py -> build/bdist.linux-armv7l/wheel/./ilus/modules
2026-03-21T02:42:57,926   creating build/bdist.linux-armv7l/wheel/ilus/modules/summary
2026-03-21T02:42:57,927   copying build/lib/ilus/modules/summary/bam.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-03-21T02:42:57,929   copying build/lib/ilus/modules/summary/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/modules/summary
2026-03-21T02:42:57,931   copying build/lib/ilus/main.py -> build/bdist.linux-armv7l/wheel/./ilus
2026-03-21T02:42:57,933   creating build/bdist.linux-armv7l/wheel/ilus/pipeline
2026-03-21T02:42:57,934   copying build/lib/ilus/pipeline/_command_args.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-03-21T02:42:57,937   copying build/lib/ilus/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-03-21T02:42:57,938   copying build/lib/ilus/pipeline/_germline_short_variant_discovery.py -> build/bdist.linux-armv7l/wheel/./ilus/pipeline
2026-03-21T02:42:57,941   creating build/bdist.linux-armv7l/wheel/ilus/launch
2026-03-21T02:42:57,942   copying build/lib/ilus/launch/do.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-03-21T02:42:57,944   copying build/lib/ilus/launch/__init__.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-03-21T02:42:57,945   copying build/lib/ilus/launch/runfunction.py -> build/bdist.linux-armv7l/wheel/./ilus/launch
2026-03-21T02:42:57,948   running install_egg_info
2026-03-21T02:42:57,984   Copying ilus.egg-info to build/bdist.linux-armv7l/wheel/./ilus-2.0.1-py3.11.egg-info
2026-03-21T02:42:57,996   running install_scripts
2026-03-21T02:42:58,010   creating build/bdist.linux-armv7l/wheel/ilus-2.0.1.dist-info/WHEEL
2026-03-21T02:42:58,012   creating '/tmp/pip-wheel-2_1z4e5j/ilus-2.0.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-21T02:42:58,014   adding 'ilus/__init__.py'
2026-03-21T02:42:58,016   adding 'ilus/main.py'
2026-03-21T02:42:58,018   adding 'ilus/launch/__init__.py'
2026-03-21T02:42:58,019   adding 'ilus/launch/do.py'
2026-03-21T02:42:58,023   adding 'ilus/launch/runfunction.py'
2026-03-21T02:42:58,024   adding 'ilus/modules/__init__.py'
2026-03-21T02:42:58,026   adding 'ilus/modules/bcftools.py'
2026-03-21T02:42:58,027   adding 'ilus/modules/bwa.py'
2026-03-21T02:42:58,029   adding 'ilus/modules/gatk.py'
2026-03-21T02:42:58,031   adding 'ilus/modules/sentieon.py'
2026-03-21T02:42:58,032   adding 'ilus/modules/soapnuke.py'
2026-03-21T02:42:58,034   adding 'ilus/modules/summary/__init__.py'
2026-03-21T02:42:58,035   adding 'ilus/modules/summary/bam.py'
2026-03-21T02:42:58,037   adding 'ilus/modules/utils/__init__.py'
2026-03-21T02:42:58,038   adding 'ilus/modules/utils/_check_config.py'
2026-03-21T02:42:58,040   adding 'ilus/modules/utils/_check_input.py'
2026-03-21T02:42:58,041   adding 'ilus/modules/utils/_check_jobs.py'
2026-03-21T02:42:58,042   adding 'ilus/modules/utils/_split_jobs.py'
2026-03-21T02:42:58,043   adding 'ilus/modules/utils/_utils.py'
2026-03-21T02:42:58,045   adding 'ilus/pipeline/__init__.py'
2026-03-21T02:42:58,047   adding 'ilus/pipeline/_command_args.py'
2026-03-21T02:42:58,049   adding 'ilus/pipeline/_germline_short_variant_discovery.py'
2026-03-21T02:42:58,056   adding 'ilus-2.0.1.dist-info/licenses/LICENSE'
2026-03-21T02:42:58,060   adding 'ilus-2.0.1.dist-info/METADATA'
2026-03-21T02:42:58,062   adding 'ilus-2.0.1.dist-info/WHEEL'
2026-03-21T02:42:58,062   adding 'ilus-2.0.1.dist-info/entry_points.txt'
2026-03-21T02:42:58,063   adding 'ilus-2.0.1.dist-info/top_level.txt'
2026-03-21T02:42:58,064   adding 'ilus-2.0.1.dist-info/RECORD'
2026-03-21T02:42:58,066   removing build/bdist.linux-armv7l/wheel
2026-03-21T02:42:58,183   Building wheel for ilus (setup.py): finished with status 'done'
2026-03-21T02:42:58,186   Created wheel for ilus: filename=ilus-2.0.1-py3-none-any.whl size=53859 sha256=936302441227e28299029bb1accbbfaba83b1492fd3cba9574d1c98b951dc676
2026-03-21T02:42:58,187   Stored in directory: /tmp/pip-ephem-wheel-cache-vg8ppbdg/wheels/da/1e/67/77f3b7e5bc5af1f02ab71f912f6b33c7dc39d200fe8db406df
2026-03-21T02:42:58,204 Successfully built ilus
2026-03-21T02:42:58,208 Removed build tracker: '/tmp/pip-build-tracker-ayvogq1k'