2026-03-21T12:47:58,381 Created temporary directory: /tmp/pip-ephem-wheel-cache-f5sjmuto 2026-03-21T12:47:58,383 Created temporary directory: /tmp/pip-build-tracker-wzbc7zpq 2026-03-21T12:47:58,383 Initialized build tracking at /tmp/pip-build-tracker-wzbc7zpq 2026-03-21T12:47:58,384 Created build tracker: /tmp/pip-build-tracker-wzbc7zpq 2026-03-21T12:47:58,384 Entered build tracker: /tmp/pip-build-tracker-wzbc7zpq 2026-03-21T12:47:58,385 Created temporary directory: /tmp/pip-wheel-dzyneq1x 2026-03-21T12:47:58,388 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-21T12:47:58,390 Created temporary directory: /tmp/pip-ephem-wheel-cache-yi7d2tcp 2026-03-21T12:47:58,416 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-21T12:47:58,419 2 location(s) to search for versions of omicverse: 2026-03-21T12:47:58,419 * https://pypi.org/simple/omicverse/ 2026-03-21T12:47:58,419 * https://www.piwheels.org/simple/omicverse/ 2026-03-21T12:47:58,420 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-21T12:47:58,421 Getting page https://pypi.org/simple/omicverse/ 2026-03-21T12:47:58,423 Found index url https://pypi.org/simple 2026-03-21T12:47:58,643 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-21T12:47:58,664 Skipping link: No binaries permitted for omicverse: 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https://pypi.org/simple/omicverse/ 2026-03-21T12:47:58,992 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-21T12:47:59,010 Collecting omicverse==2.0.2 2026-03-21T12:47:59,013 Created temporary directory: /tmp/pip-unpack-526opcom 2026-03-21T12:47:59,149 Downloading omicverse-2.0.2.tar.gz (11.8 MB) 2026-03-21T12:48:04,632 Added omicverse==2.0.2 from https://files.pythonhosted.org/packages/a0/31/ae5de8bec85f0168e3264c6b795e5ed459ba05fd707eaf4815a6b6f5060e/omicverse-2.0.2.tar.gz to build tracker '/tmp/pip-build-tracker-wzbc7zpq' 2026-03-21T12:48:04,640 Created temporary directory: /tmp/pip-build-env-zvmrjwm0 2026-03-21T12:48:04,644 Installing build dependencies: started 2026-03-21T12:48:04,646 Running command pip subprocess to install build dependencies 2026-03-21T12:48:05,788 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-21T12:48:06,419 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-21T12:48:06,442 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-21T12:48:08,248 Collecting setuptools>=61 2026-03-21T12:48:08,327 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-21T12:48:08,598 Collecting wheel 2026-03-21T12:48:08,614 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-21T12:48:10,620 Collecting Cython 2026-03-21T12:48:11,433 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-21T12:48:11,906 Collecting packaging>=24.0 2026-03-21T12:48:11,922 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-21T12:48:15,097 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-21T12:48:22,425 Creating /tmp/pip-build-env-zvmrjwm0/overlay/local/bin 2026-03-21T12:48:22,427 changing mode of /tmp/pip-build-env-zvmrjwm0/overlay/local/bin/cygdb to 755 2026-03-21T12:48:22,429 changing mode of /tmp/pip-build-env-zvmrjwm0/overlay/local/bin/cython to 755 2026-03-21T12:48:22,431 changing mode of /tmp/pip-build-env-zvmrjwm0/overlay/local/bin/cythonize to 755 2026-03-21T12:48:22,565 changing mode of /tmp/pip-build-env-zvmrjwm0/overlay/local/bin/wheel to 755 2026-03-21T12:48:22,594 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-21T12:48:22,969 Installing build dependencies: finished with status 'done' 2026-03-21T12:48:22,975 Getting requirements to build wheel: started 2026-03-21T12:48:22,976 Running command Getting requirements to build wheel 2026-03-21T12:48:23,925 /tmp/pip-build-env-zvmrjwm0/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-21T12:48:23,925 !! 2026-03-21T12:48:23,927 ******************************************************************************** 2026-03-21T12:48:23,927 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-21T12:48:23,929 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-21T12:48:23,929 or your builds will no longer be supported. 2026-03-21T12:48:23,931 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-21T12:48:23,931 ******************************************************************************** 2026-03-21T12:48:23,932 !! 2026-03-21T12:48:23,933 corresp(dist, value, root_dir) 2026-03-21T12:48:24,212 running egg_info 2026-03-21T12:48:24,218 writing omicverse.egg-info/PKG-INFO 2026-03-21T12:48:24,236 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-21T12:48:24,238 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-21T12:48:24,247 writing requirements to omicverse.egg-info/requires.txt 2026-03-21T12:48:24,249 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-21T12:48:24,713 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:24,780 reading manifest template 'MANIFEST.in' 2026-03-21T12:48:25,706 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-21T12:48:27,024 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-21T12:48:27,459 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-21T12:48:31,968 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-21T12:48:32,422 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-21T12:48:32,865 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-21T12:48:33,309 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-21T12:48:34,238 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-21T12:48:34,743 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-21T12:48:35,221 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-21T12:48:35,224 no previously-included directories found matching '.git' 2026-03-21T12:48:35,227 no previously-included directories found matching '.github' 2026-03-21T12:48:35,229 no previously-included directories found matching '.claude' 2026-03-21T12:48:35,232 no previously-included directories found matching '.pytest_cache' 2026-03-21T12:48:35,236 no previously-included directories found matching '.ruff_cache' 2026-03-21T12:48:35,239 no previously-included directories found matching '.vscode' 2026-03-21T12:48:35,242 no previously-included directories found matching 'docs' 2026-03-21T12:48:35,245 no previously-included directories found matching 'tests' 2026-03-21T12:48:35,247 no previously-included directories found matching 'OvIntelligence' 2026-03-21T12:48:35,250 no previously-included directories found matching 'READMEM' 2026-03-21T12:48:35,253 no previously-included directories found matching 'omicverse_guide' 2026-03-21T12:48:35,257 no previously-included directories found matching 'omicverse_web' 2026-03-21T12:48:35,259 no previously-included directories found matching 'tmp' 2026-03-21T12:48:35,262 no previously-included directories found matching 'tmp_omicverse' 2026-03-21T12:48:35,265 no previously-included directories found matching 'Skill_Seekers' 2026-03-21T12:48:35,271 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-21T12:48:35,279 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-21T12:48:35,285 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-21T12:48:35,286 adding license file 'LICENSE' 2026-03-21T12:48:35,358 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:35,473 Getting requirements to build wheel: finished with status 'done' 2026-03-21T12:48:35,476 Created temporary directory: /tmp/pip-modern-metadata-xstkotfq 2026-03-21T12:48:35,479 Preparing metadata (pyproject.toml): started 2026-03-21T12:48:35,480 Running command Preparing metadata (pyproject.toml) 2026-03-21T12:48:36,137 /tmp/pip-build-env-zvmrjwm0/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-21T12:48:36,138 !! 2026-03-21T12:48:36,139 ******************************************************************************** 2026-03-21T12:48:36,140 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-21T12:48:36,140 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-21T12:48:36,141 or your builds will no longer be supported. 2026-03-21T12:48:36,142 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-21T12:48:36,142 ******************************************************************************** 2026-03-21T12:48:36,143 !! 2026-03-21T12:48:36,144 corresp(dist, value, root_dir) 2026-03-21T12:48:36,428 running dist_info 2026-03-21T12:48:36,439 creating /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info 2026-03-21T12:48:36,440 writing /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/PKG-INFO 2026-03-21T12:48:36,458 writing dependency_links to /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/dependency_links.txt 2026-03-21T12:48:36,460 writing entry points to /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/entry_points.txt 2026-03-21T12:48:36,469 writing requirements to /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/requires.txt 2026-03-21T12:48:36,470 writing top-level names to /tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/top_level.txt 2026-03-21T12:48:36,472 writing manifest file '/tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:36,681 reading manifest file '/tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:36,683 reading manifest template 'MANIFEST.in' 2026-03-21T12:48:38,340 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-21T12:48:39,847 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-21T12:48:40,303 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-21T12:48:44,930 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-21T12:48:45,662 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-21T12:48:46,131 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-21T12:48:46,639 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-21T12:48:47,093 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-21T12:48:47,542 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-21T12:48:47,976 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-21T12:48:47,978 no previously-included directories found matching '.git' 2026-03-21T12:48:47,980 no previously-included directories found matching '.github' 2026-03-21T12:48:47,982 no previously-included directories found matching '.claude' 2026-03-21T12:48:47,984 no previously-included directories found matching '.pytest_cache' 2026-03-21T12:48:47,986 no previously-included directories found matching '.ruff_cache' 2026-03-21T12:48:47,989 no previously-included directories found matching '.vscode' 2026-03-21T12:48:47,991 no previously-included directories found matching 'docs' 2026-03-21T12:48:47,993 no previously-included directories found matching 'tests' 2026-03-21T12:48:47,995 no previously-included directories found matching 'OvIntelligence' 2026-03-21T12:48:47,997 no previously-included directories found matching 'READMEM' 2026-03-21T12:48:47,999 no previously-included directories found matching 'omicverse_guide' 2026-03-21T12:48:48,001 no previously-included directories found matching 'omicverse_web' 2026-03-21T12:48:48,003 no previously-included directories found matching 'tmp' 2026-03-21T12:48:48,006 no previously-included directories found matching 'tmp_omicverse' 2026-03-21T12:48:48,008 no previously-included directories found matching 'Skill_Seekers' 2026-03-21T12:48:48,012 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-21T12:48:48,018 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-21T12:48:48,022 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-21T12:48:48,023 adding license file 'LICENSE' 2026-03-21T12:48:48,077 writing manifest file '/tmp/pip-modern-metadata-xstkotfq/omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:48,080 creating '/tmp/pip-modern-metadata-xstkotfq/omicverse-2.0.2.dist-info' 2026-03-21T12:48:48,229 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-21T12:48:48,244 Source in /tmp/pip-wheel-dzyneq1x/omicverse_a3cc70ed1220468fbf304de70d206f06 has version 2.0.2, which satisfies requirement omicverse==2.0.2 from https://files.pythonhosted.org/packages/a0/31/ae5de8bec85f0168e3264c6b795e5ed459ba05fd707eaf4815a6b6f5060e/omicverse-2.0.2.tar.gz 2026-03-21T12:48:48,245 Removed omicverse==2.0.2 from https://files.pythonhosted.org/packages/a0/31/ae5de8bec85f0168e3264c6b795e5ed459ba05fd707eaf4815a6b6f5060e/omicverse-2.0.2.tar.gz from build tracker '/tmp/pip-build-tracker-wzbc7zpq' 2026-03-21T12:48:48,269 Created temporary directory: /tmp/pip-unpack-b__ncunf 2026-03-21T12:48:48,270 Building wheels for collected packages: omicverse 2026-03-21T12:48:48,274 Created temporary directory: /tmp/pip-wheel-0p30c8a4 2026-03-21T12:48:48,275 Destination directory: /tmp/pip-wheel-0p30c8a4 2026-03-21T12:48:48,277 Building wheel for omicverse (pyproject.toml): started 2026-03-21T12:48:48,278 Running command Building wheel for omicverse (pyproject.toml) 2026-03-21T12:48:48,916 /tmp/pip-build-env-zvmrjwm0/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-21T12:48:48,917 !! 2026-03-21T12:48:48,918 ******************************************************************************** 2026-03-21T12:48:48,919 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-21T12:48:48,920 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-21T12:48:48,921 or your builds will no longer be supported. 2026-03-21T12:48:48,922 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-21T12:48:48,922 ******************************************************************************** 2026-03-21T12:48:48,923 !! 2026-03-21T12:48:48,924 corresp(dist, value, root_dir) 2026-03-21T12:48:49,189 running bdist_wheel 2026-03-21T12:48:49,209 running build 2026-03-21T12:48:49,210 running build_py 2026-03-21T12:48:49,217 creating build/lib/omicverse 2026-03-21T12:48:49,220 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-21T12:48:49,223 copying omicverse/cli.py -> build/lib/omicverse 2026-03-21T12:48:49,225 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-21T12:48:49,228 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-21T12:48:49,231 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-21T12:48:49,234 copying omicverse/claw.py -> build/lib/omicverse 2026-03-21T12:48:49,237 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-21T12:48:49,240 creating build/lib/omicverse/pp 2026-03-21T12:48:49,242 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,245 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,247 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,250 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,252 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,254 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,257 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,259 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,262 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,264 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,266 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,269 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,271 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,275 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,277 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,280 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,283 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,286 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,288 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,291 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,293 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,296 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,299 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-21T12:48:49,302 creating build/lib/omicverse/bulk2single 2026-03-21T12:48:49,303 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,305 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,307 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,310 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,313 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,316 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,318 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,321 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,322 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,325 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-21T12:48:49,328 creating build/lib/omicverse/llm 2026-03-21T12:48:49,329 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,333 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,337 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,339 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,341 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,346 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,348 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,353 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,356 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,358 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,361 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,364 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-21T12:48:49,369 creating build/lib/omicverse/fm 2026-03-21T12:48:49,371 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-21T12:48:49,374 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-21T12:48:49,376 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-21T12:48:49,379 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-21T12:48:49,382 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-21T12:48:49,387 creating build/lib/omicverse/biocontext 2026-03-21T12:48:49,388 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-21T12:48:49,391 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-21T12:48:49,393 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-21T12:48:49,396 creating build/lib/omicverse/data_files 2026-03-21T12:48:49,397 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-21T12:48:49,400 creating build/lib/omicverse/jarvis 2026-03-21T12:48:49,401 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,404 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,407 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,410 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,413 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,415 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,417 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,419 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,422 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,425 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-21T12:48:49,429 creating build/lib/omicverse/pl 2026-03-21T12:48:49,430 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,433 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,436 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,440 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,447 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,450 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,454 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,457 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,460 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,462 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,466 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,469 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,472 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,475 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,482 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,485 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,487 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,490 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,493 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,495 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-21T12:48:49,500 creating build/lib/omicverse/mcp 2026-03-21T12:48:49,501 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,503 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,506 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,509 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,511 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,513 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,515 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,517 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,519 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,521 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,523 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,525 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,528 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-21T12:48:49,532 creating build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,532 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,534 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,537 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,539 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,541 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,543 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,544 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,546 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,549 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:48:49,552 creating build/lib/omicverse/popv 2026-03-21T12:48:49,553 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,555 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,558 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,560 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,562 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,564 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-21T12:48:49,567 creating build/lib/omicverse/datasets 2026-03-21T12:48:49,568 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-21T12:48:49,570 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-21T12:48:49,573 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-21T12:48:49,575 creating build/lib/omicverse/space 2026-03-21T12:48:49,576 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-21T12:48:49,579 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-21T12:48:49,581 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-21T12:48:49,583 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-21T12:48:49,587 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-21T12:48:49,588 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-21T12:48:49,591 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-21T12:48:49,593 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-21T12:48:49,597 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-21T12:48:49,599 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-21T12:48:49,602 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-21T12:48:49,605 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-21T12:48:49,607 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-21T12:48:49,610 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-21T12:48:49,614 creating build/lib/omicverse/single 2026-03-21T12:48:49,615 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-21T12:48:49,618 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-21T12:48:49,621 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-21T12:48:49,625 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-21T12:48:49,632 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-21T12:48:49,635 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-21T12:48:49,638 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-21T12:48:49,640 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-21T12:48:49,643 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-21T12:48:49,646 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-21T12:48:49,649 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-21T12:48:49,652 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-21T12:48:49,655 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-21T12:48:49,658 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-21T12:48:49,660 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-21T12:48:49,663 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-21T12:48:49,666 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-21T12:48:49,670 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-21T12:48:49,672 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-21T12:48:49,675 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-21T12:48:49,678 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-21T12:48:49,686 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-21T12:48:49,690 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-21T12:48:49,693 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-21T12:48:49,697 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-21T12:48:49,700 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-21T12:48:49,706 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-21T12:48:49,709 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-21T12:48:49,712 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-21T12:48:49,716 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-21T12:48:49,720 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-21T12:48:49,723 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-21T12:48:49,726 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-21T12:48:49,729 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-21T12:48:49,733 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-21T12:48:49,736 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-21T12:48:49,740 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-21T12:48:49,744 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-21T12:48:49,747 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-21T12:48:49,751 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-21T12:48:49,756 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-21T12:48:49,759 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-21T12:48:49,762 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-21T12:48:49,764 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-21T12:48:49,768 creating build/lib/omicverse/agent 2026-03-21T12:48:49,769 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-21T12:48:49,772 creating build/lib/omicverse/external 2026-03-21T12:48:49,773 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-21T12:48:49,776 creating build/lib/omicverse/bulk 2026-03-21T12:48:49,778 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,781 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,796 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,798 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,809 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,811 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,813 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,816 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,818 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,821 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,822 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-21T12:48:49,826 creating build/lib/omicverse/utils 2026-03-21T12:48:49,827 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,830 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,832 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,835 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,839 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,842 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,843 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,846 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,848 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,850 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,852 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,855 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,858 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,861 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,863 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,866 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,868 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,870 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,872 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,875 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,878 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,880 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,883 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,887 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,889 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,892 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,894 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,897 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,899 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,901 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,902 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,905 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,908 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,910 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-21T12:48:49,913 creating build/lib/omicverse/alignment 2026-03-21T12:48:49,914 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,916 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,919 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,921 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,923 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,925 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,927 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,930 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,932 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-21T12:48:49,935 creating build/lib/omicverse/io 2026-03-21T12:48:49,936 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-21T12:48:49,938 creating build/lib/omicverse/pp/experimental 2026-03-21T12:48:49,939 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-21T12:48:49,941 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-21T12:48:49,943 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-21T12:48:49,946 creating build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,947 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,950 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,953 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,956 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,959 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,961 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,964 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,968 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,970 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,972 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,975 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,977 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-21T12:48:49,981 creating build/lib/omicverse/llm/scfoundation 2026-03-21T12:48:49,982 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:48:49,984 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:48:49,986 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:48:49,988 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:48:49,991 creating build/lib/omicverse/llm/dr 2026-03-21T12:48:49,992 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:49,994 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:49,996 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:49,997 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:49,999 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:50,001 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-21T12:48:50,003 creating build/lib/omicverse/llm/CellPLM 2026-03-21T12:48:50,004 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-21T12:48:50,006 creating build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,007 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,010 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,012 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,014 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,016 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,018 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-21T12:48:50,021 creating build/lib/omicverse/llm/utils 2026-03-21T12:48:50,022 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-21T12:48:50,024 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-21T12:48:50,027 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-21T12:48:50,030 creating build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,031 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,034 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,036 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,038 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,040 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,043 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-21T12:48:50,046 creating build/lib/omicverse/llm/domain_research 2026-03-21T12:48:50,047 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-21T12:48:50,050 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,051 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,054 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,056 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,059 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,061 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,064 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,066 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-21T12:48:50,069 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,071 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,073 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,076 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,079 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,082 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,085 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,087 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:48:50,090 creating build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,091 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,094 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,096 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,098 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,100 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-21T12:48:50,102 creating build/lib/omicverse/llm/dr/retrievers 2026-03-21T12:48:50,103 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-21T12:48:50,107 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-21T12:48:50,110 creating build/lib/omicverse/llm/dr/verify 2026-03-21T12:48:50,111 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-21T12:48:50,114 creating build/lib/omicverse/llm/dr/research 2026-03-21T12:48:50,115 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-21T12:48:50,117 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-21T12:48:50,119 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-21T12:48:50,121 creating build/lib/omicverse/llm/dr/write 2026-03-21T12:48:50,122 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-21T12:48:50,125 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-21T12:48:50,127 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-21T12:48:50,129 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,131 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,133 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,135 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,137 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,139 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-21T12:48:50,142 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-21T12:48:50,143 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-21T12:48:50,146 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-21T12:48:50,147 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-21T12:48:50,150 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,151 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,153 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,155 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,157 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,160 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-21T12:48:50,163 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-21T12:48:50,164 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-21T12:48:50,166 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-21T12:48:50,167 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-21T12:48:50,170 creating build/lib/omicverse/llm/CellPLM/head 2026-03-21T12:48:50,171 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-21T12:48:50,172 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-21T12:48:50,175 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-21T12:48:50,176 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-21T12:48:50,178 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-21T12:48:50,181 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-21T12:48:50,183 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-21T12:48:50,185 creating build/lib/omicverse/llm/CellPLM/model 2026-03-21T12:48:50,186 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-21T12:48:50,188 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-21T12:48:50,191 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,192 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,194 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,196 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,198 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,200 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,203 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-21T12:48:50,205 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-21T12:48:50,206 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-21T12:48:50,209 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-21T12:48:50,211 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-21T12:48:50,213 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-21T12:48:50,214 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-21T12:48:50,216 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-21T12:48:50,218 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,219 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,221 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,223 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,225 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,228 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-21T12:48:50,230 creating build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,231 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,234 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,237 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,239 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,242 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,244 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-21T12:48:50,246 creating build/lib/omicverse/llm/scgpt/utils 2026-03-21T12:48:50,247 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-21T12:48:50,249 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-21T12:48:50,252 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-21T12:48:50,253 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-21T12:48:50,255 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-21T12:48:50,258 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-21T12:48:50,260 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-21T12:48:50,261 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-21T12:48:50,263 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-21T12:48:50,266 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,267 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,269 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,271 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,274 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,276 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-21T12:48:50,279 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-21T12:48:50,280 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-21T12:48:50,282 creating build/lib/omicverse/llm/domain_research/write 2026-03-21T12:48:50,283 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-21T12:48:50,286 creating build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,287 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,289 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,291 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,293 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,295 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,297 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,299 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,302 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-21T12:48:50,304 creating build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,306 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,309 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,312 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,314 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,317 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,320 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-21T12:48:50,323 creating build/lib/omicverse/jarvis/gateway 2026-03-21T12:48:50,324 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-21T12:48:50,327 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-21T12:48:50,329 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-21T12:48:50,331 creating build/lib/omicverse/jarvis/memory 2026-03-21T12:48:50,332 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-21T12:48:50,334 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-21T12:48:50,337 creating build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,338 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,340 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,342 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,344 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,346 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,347 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,349 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-21T12:48:50,351 creating build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,353 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,355 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,357 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,359 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,361 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-21T12:48:50,364 creating build/lib/omicverse/popv/hub 2026-03-21T12:48:50,365 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-21T12:48:50,367 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-21T12:48:50,369 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-21T12:48:50,371 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-21T12:48:50,373 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-21T12:48:50,376 creating build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,377 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,379 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,382 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,384 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,386 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,388 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,391 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,393 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,395 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,397 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,399 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,402 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-21T12:48:50,404 creating build/lib/omicverse/single/templates 2026-03-21T12:48:50,405 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-21T12:48:50,407 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-21T12:48:50,410 creating build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,411 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,414 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,417 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,419 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,421 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,423 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:48:50,425 creating build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,426 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,428 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,430 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,433 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,436 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,439 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,440 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,443 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,444 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,447 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,449 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,452 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,454 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,456 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,458 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-21T12:48:50,461 creating build/lib/omicverse/external/GNTD 2026-03-21T12:48:50,462 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-21T12:48:50,464 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-21T12:48:50,466 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-21T12:48:50,469 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-21T12:48:50,473 creating build/lib/omicverse/external/cnmf 2026-03-21T12:48:50,474 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-21T12:48:50,478 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-21T12:48:50,484 creating build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,485 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,488 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,491 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,493 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,495 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,498 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,501 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-21T12:48:50,504 creating build/lib/omicverse/external/scanorama 2026-03-21T12:48:50,505 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-21T12:48:50,508 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-21T12:48:50,512 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-21T12:48:50,514 creating build/lib/omicverse/external/bulk2single 2026-03-21T12:48:50,516 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-21T12:48:50,518 creating build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,520 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,522 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,525 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,527 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,531 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,533 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-21T12:48:50,536 creating build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,537 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,541 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,544 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,547 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,550 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-21T12:48:50,553 creating build/lib/omicverse/external/scMulan 2026-03-21T12:48:50,554 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-21T12:48:50,557 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-21T12:48:50,560 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-21T12:48:50,563 creating build/lib/omicverse/external/datacollect 2026-03-21T12:48:50,564 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-21T12:48:50,567 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-21T12:48:50,570 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-21T12:48:50,573 creating build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,574 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,577 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,581 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,583 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,587 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,589 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,591 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,593 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,596 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-21T12:48:50,599 creating build/lib/omicverse/external/flowsig 2026-03-21T12:48:50,600 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-21T12:48:50,602 creating build/lib/omicverse/external/mofapy2 2026-03-21T12:48:50,603 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-21T12:48:50,605 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-21T12:48:50,607 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-21T12:48:50,609 creating build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,610 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,612 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,614 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,617 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,619 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,621 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,623 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,626 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,628 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,630 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,632 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-21T12:48:50,635 creating build/lib/omicverse/external/scrublet 2026-03-21T12:48:50,636 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-21T12:48:50,639 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-21T12:48:50,641 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-21T12:48:50,644 creating build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,645 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,648 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,650 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,657 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,659 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-21T12:48:50,663 creating build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,664 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,666 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,670 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,671 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,674 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,676 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,679 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,681 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,684 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,686 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,687 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,689 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,691 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,693 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,695 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,697 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,699 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,701 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,703 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,705 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,707 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-21T12:48:50,709 creating build/lib/omicverse/external/commot 2026-03-21T12:48:50,711 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-21T12:48:50,713 creating build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,714 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,718 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,721 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,725 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,728 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,731 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,734 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,736 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,738 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-21T12:48:50,741 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,742 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,745 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,747 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,749 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,751 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-21T12:48:50,754 creating build/lib/omicverse/external/tape 2026-03-21T12:48:50,755 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,757 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,760 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,762 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,763 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,766 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-21T12:48:50,769 creating build/lib/omicverse/external/spaco 2026-03-21T12:48:50,770 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,773 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,776 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,778 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,781 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,782 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,784 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,786 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,789 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-21T12:48:50,791 creating build/lib/omicverse/external/mpl_chord 2026-03-21T12:48:50,792 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-21T12:48:50,794 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-21T12:48:50,796 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-21T12:48:50,801 creating build/lib/omicverse/external/cellanova 2026-03-21T12:48:50,802 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-21T12:48:50,804 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-21T12:48:50,806 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-21T12:48:50,809 creating build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,810 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,813 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,815 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,817 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,820 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,823 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,826 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,827 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,829 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,832 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,834 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,837 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-21T12:48:50,840 creating build/lib/omicverse/external/cytotrace2 2026-03-21T12:48:50,841 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-21T12:48:50,843 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-21T12:48:50,845 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-21T12:48:50,848 creating build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,849 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,851 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,853 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,855 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,857 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-21T12:48:50,860 creating build/lib/omicverse/external/tosica 2026-03-21T12:48:50,861 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-21T12:48:50,863 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-21T12:48:50,866 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-21T12:48:50,868 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-21T12:48:50,870 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-21T12:48:50,873 creating build/lib/omicverse/external/scdiffusion 2026-03-21T12:48:50,874 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-21T12:48:50,877 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-21T12:48:50,879 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-21T12:48:50,881 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-21T12:48:50,885 creating build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,886 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,888 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,890 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,892 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,894 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,896 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,899 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,901 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,903 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,905 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,908 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,910 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,912 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-21T12:48:50,915 creating build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,916 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,918 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,920 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,922 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,924 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,926 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,928 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-21T12:48:50,931 creating build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,932 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,935 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,937 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,939 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,941 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-21T12:48:50,944 creating build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,945 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,948 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,950 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,953 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,956 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,957 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,961 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,964 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-21T12:48:50,967 creating build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,968 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,971 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,973 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,975 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,978 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,980 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-21T12:48:50,983 creating build/lib/omicverse/external/somde 2026-03-21T12:48:50,984 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-21T12:48:50,986 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-21T12:48:50,988 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-21T12:48:50,992 creating build/lib/omicverse/external/CAST 2026-03-21T12:48:50,993 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:50,996 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:50,999 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:51,001 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:51,003 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:51,006 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:51,009 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-21T12:48:51,014 creating build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,015 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,017 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,019 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,022 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,025 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,028 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,030 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,032 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,035 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,038 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-21T12:48:51,043 creating build/lib/omicverse/external/STT 2026-03-21T12:48:51,044 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-21T12:48:51,046 creating build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,048 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,050 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,054 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,057 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,060 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,062 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,065 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,068 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,070 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-21T12:48:51,074 creating build/lib/omicverse/external/VIA 2026-03-21T12:48:51,075 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,077 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,091 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,093 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,099 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,109 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,116 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-21T12:48:51,119 creating build/lib/omicverse/external/nocd 2026-03-21T12:48:51,120 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,123 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,125 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,127 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,129 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,131 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-21T12:48:51,134 creating build/lib/omicverse/external/spaceflow 2026-03-21T12:48:51,135 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-21T12:48:51,138 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-21T12:48:51,140 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-21T12:48:51,142 creating build/lib/omicverse/external/scSLAT 2026-03-21T12:48:51,143 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-21T12:48:51,145 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-21T12:48:51,147 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-21T12:48:51,150 creating build/lib/omicverse/external/BINARY 2026-03-21T12:48:51,151 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-21T12:48:51,153 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-21T12:48:51,155 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-21T12:48:51,158 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-21T12:48:51,160 creating build/lib/omicverse/external/bin2cell 2026-03-21T12:48:51,161 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-21T12:48:51,163 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-21T12:48:51,167 creating build/lib/omicverse/external/palantir 2026-03-21T12:48:51,168 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,171 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,176 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,178 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,182 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,184 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,186 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,188 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,190 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,192 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,194 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-21T12:48:51,197 creating build/lib/omicverse/external/topact 2026-03-21T12:48:51,198 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,200 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,202 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,205 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,207 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,210 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,212 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,214 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-21T12:48:51,216 creating build/lib/omicverse/external/harmony 2026-03-21T12:48:51,217 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-21T12:48:51,220 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-21T12:48:51,223 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-21T12:48:51,225 creating build/lib/omicverse/external/PROST 2026-03-21T12:48:51,226 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,229 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,231 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,233 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,236 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,237 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,240 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-21T12:48:51,242 creating build/lib/omicverse/external/gaston 2026-03-21T12:48:51,243 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,246 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,248 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,250 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,252 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,254 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,256 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,258 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,260 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,262 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,264 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,266 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,268 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,270 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,272 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,275 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-21T12:48:51,277 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,278 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,280 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,283 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,286 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,288 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,291 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,293 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,296 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,299 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,301 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:48:51,304 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,305 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,308 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,309 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,312 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,314 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,316 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,318 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,320 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,322 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,324 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,326 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,328 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:48:51,331 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,332 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,334 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,337 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,339 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,341 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:48:51,345 creating build/lib/omicverse/external/scMulan/model 2026-03-21T12:48:51,346 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-21T12:48:51,348 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-21T12:48:51,351 creating build/lib/omicverse/external/scMulan/utils 2026-03-21T12:48:51,353 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-21T12:48:51,355 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-21T12:48:51,357 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:48:51,359 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:48:51,362 creating build/lib/omicverse/external/datacollect/config 2026-03-21T12:48:51,363 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-21T12:48:51,366 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-21T12:48:51,368 creating build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,369 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,372 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,375 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,377 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,380 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,382 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,385 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,387 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,390 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,392 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,395 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,397 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,399 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,402 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,404 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,407 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,410 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,412 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,415 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,417 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,420 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,422 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-21T12:48:51,426 creating build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,427 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,430 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,432 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,434 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,436 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,439 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-21T12:48:51,442 creating build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,443 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,446 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,449 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,451 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,454 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,457 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,459 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,461 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,463 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,466 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,469 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,471 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,474 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,476 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,479 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,481 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,483 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,486 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,488 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,490 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,493 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,495 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,498 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,500 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,503 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,506 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,508 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,510 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,513 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,515 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,518 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,520 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,523 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,525 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-21T12:48:51,529 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,530 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,533 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,535 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,538 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,540 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,543 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,545 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,548 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,550 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-21T12:48:51,554 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,555 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,558 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,560 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,562 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,565 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,568 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-21T12:48:51,571 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,572 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,575 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,577 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,580 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,582 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,585 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,587 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,590 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-21T12:48:51,592 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-21T12:48:51,593 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-21T12:48:51,596 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-21T12:48:51,598 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-21T12:48:51,600 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-21T12:48:51,603 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,604 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,606 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,609 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,611 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,613 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,615 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,618 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-21T12:48:51,620 creating build/lib/omicverse/external/flowsig/plotting 2026-03-21T12:48:51,621 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-21T12:48:51,623 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-21T12:48:51,627 creating build/lib/omicverse/external/flowsig/utilities 2026-03-21T12:48:51,628 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-21T12:48:51,630 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-21T12:48:51,632 creating build/lib/omicverse/external/flowsig/tools 2026-03-21T12:48:51,634 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-21T12:48:51,636 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-21T12:48:51,638 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-21T12:48:51,641 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-21T12:48:51,643 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,645 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,647 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,650 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,652 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,654 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,656 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-21T12:48:51,659 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,660 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,662 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,665 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,668 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,671 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,673 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-21T12:48:51,675 creating build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,676 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,678 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,680 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,682 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,685 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-21T12:48:51,688 creating build/lib/omicverse/external/mofapy2/run 2026-03-21T12:48:51,689 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-21T12:48:51,693 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-21T12:48:51,695 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-21T12:48:51,696 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-21T12:48:51,698 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-21T12:48:51,701 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,702 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,706 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,708 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,710 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,712 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,715 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,717 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,720 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,722 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,724 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,727 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,729 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,731 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,733 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,736 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,738 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,740 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,742 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-21T12:48:51,745 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,746 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,749 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,750 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,753 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,755 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,756 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,759 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,762 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,764 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,766 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,768 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-21T12:48:51,771 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-21T12:48:51,772 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-21T12:48:51,774 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-21T12:48:51,777 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-21T12:48:51,779 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-21T12:48:51,781 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-21T12:48:51,783 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-21T12:48:51,785 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-21T12:48:51,788 creating build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,789 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,792 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,794 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,795 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,797 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-21T12:48:51,800 creating build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,801 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,805 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,808 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,809 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,812 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,814 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,817 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,820 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-21T12:48:51,822 creating build/lib/omicverse/external/commot/plotting 2026-03-21T12:48:51,823 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-21T12:48:51,826 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-21T12:48:51,828 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-21T12:48:51,832 creating build/lib/omicverse/external/commot/tools 2026-03-21T12:48:51,833 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-21T12:48:51,835 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-21T12:48:51,839 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-21T12:48:51,843 creating build/lib/omicverse/external/commot/preprocessing 2026-03-21T12:48:51,844 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-21T12:48:51,847 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-21T12:48:51,849 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-21T12:48:51,851 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,852 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,855 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,858 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,860 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,862 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-21T12:48:51,866 creating build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,867 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,869 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,871 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,873 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,876 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-21T12:48:51,879 creating build/lib/omicverse/external/space/cell2location 2026-03-21T12:48:51,881 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-21T12:48:51,884 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-21T12:48:51,886 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,887 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,890 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,892 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,895 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,896 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,898 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,901 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,904 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-21T12:48:51,907 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:48:51,908 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:48:51,910 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:48:51,912 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:48:51,914 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:48:51,917 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-21T12:48:51,918 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-21T12:48:51,920 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-21T12:48:51,923 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-21T12:48:51,924 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-21T12:48:51,926 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-21T12:48:51,929 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-21T12:48:51,931 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-21T12:48:51,932 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-21T12:48:51,935 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-21T12:48:51,937 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-21T12:48:51,940 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,941 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,943 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,946 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,948 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,950 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-21T12:48:51,952 creating build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,953 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,955 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,958 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,961 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,964 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:48:51,967 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-21T12:48:51,968 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-21T12:48:51,971 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-21T12:48:51,974 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-21T12:48:51,976 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,977 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,979 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,981 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,984 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,986 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-21T12:48:51,989 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-21T12:48:51,990 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-21T12:48:51,992 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-21T12:48:51,994 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-21T12:48:51,997 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-21T12:48:51,998 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-21T12:48:52,000 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-21T12:48:52,003 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-21T12:48:52,006 creating build/lib/omicverse/external/spaco/external 2026-03-21T12:48:52,007 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-21T12:48:52,009 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-21T12:48:52,012 creating build/lib/omicverse/external/single/arboreto 2026-03-21T12:48:52,014 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-21T12:48:52,016 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-21T12:48:52,019 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-21T12:48:52,021 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-21T12:48:52,024 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,025 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,027 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,029 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,032 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,034 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,036 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,039 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,042 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,044 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,046 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,048 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,050 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,052 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,055 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,057 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,059 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,061 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,063 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:48:52,066 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-21T12:48:52,067 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-21T12:48:52,069 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-21T12:48:52,071 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-21T12:48:52,073 creating build/lib/omicverse/external/CAST/model 2026-03-21T12:48:52,074 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-21T12:48:52,077 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-21T12:48:52,079 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-21T12:48:52,081 creating build/lib/omicverse/external/STT/tl 2026-03-21T12:48:52,082 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-21T12:48:52,084 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-21T12:48:52,087 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-21T12:48:52,089 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-21T12:48:52,092 creating build/lib/omicverse/external/STT/pl 2026-03-21T12:48:52,093 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-21T12:48:52,095 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-21T12:48:52,097 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-21T12:48:52,100 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-21T12:48:52,103 creating build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:48:52,104 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:48:52,107 creating build/lib/omicverse/external/nocd/metrics 2026-03-21T12:48:52,108 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-21T12:48:52,110 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-21T12:48:52,112 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-21T12:48:52,115 creating build/lib/omicverse/external/nocd/nn 2026-03-21T12:48:52,116 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-21T12:48:52,118 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-21T12:48:52,120 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-21T12:48:52,122 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-21T12:48:52,125 creating build/lib/omicverse/external/scSLAT/viz 2026-03-21T12:48:52,126 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-21T12:48:52,129 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-21T12:48:52,131 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-21T12:48:52,133 creating build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,134 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,138 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,140 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,143 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,144 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,146 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,148 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,151 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-21T12:48:52,153 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-21T12:48:52,154 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-21T12:48:52,156 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-21T12:48:52,159 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-21T12:48:52,160 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-21T12:48:52,162 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-21T12:48:52,165 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-21T12:48:52,167 creating build/lib/omicverse/bulk/_alignment 2026-03-21T12:48:52,168 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-21T12:48:52,171 creating build/lib/omicverse/utils/harness 2026-03-21T12:48:52,172 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,175 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,177 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,179 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,182 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,185 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,187 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-21T12:48:52,190 creating build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,192 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,194 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,197 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,200 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,202 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,204 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,207 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,209 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,212 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-21T12:48:52,215 creating build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,216 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,218 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,220 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,223 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,225 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,228 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,230 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,233 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,235 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,238 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-21T12:48:52,242 creating build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,243 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,246 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,249 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,251 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,254 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,257 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,259 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,262 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,264 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,267 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,269 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,272 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,275 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-21T12:48:52,278 creating build/lib/omicverse/io/spatial 2026-03-21T12:48:52,279 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-21T12:48:52,282 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-21T12:48:52,285 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-21T12:48:52,286 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-21T12:48:52,290 creating build/lib/omicverse/io/general 2026-03-21T12:48:52,291 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-21T12:48:52,293 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-21T12:48:52,294 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-21T12:48:52,297 creating build/lib/omicverse/io/single 2026-03-21T12:48:52,298 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-21T12:48:52,301 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-21T12:48:52,303 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-21T12:48:52,305 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-21T12:48:52,307 creating build/lib/omicverse/io/bulk 2026-03-21T12:48:52,308 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-21T12:48:52,312 running egg_info 2026-03-21T12:48:52,323 writing omicverse.egg-info/PKG-INFO 2026-03-21T12:48:52,340 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-21T12:48:52,342 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-21T12:48:52,350 writing requirements to omicverse.egg-info/requires.txt 2026-03-21T12:48:52,352 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-21T12:48:52,545 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-21T12:48:52,604 reading manifest template 'MANIFEST.in' 2026-03-21T12:48:53,588 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-21T12:48:54,970 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-21T12:48:55,453 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-21T12:48:59,595 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-21T12:49:00,014 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-21T12:49:00,456 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-21T12:49:00,919 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-21T12:49:01,341 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-21T12:49:01,772 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-21T12:49:02,451 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-21T12:49:02,454 no previously-included directories found matching '.git' 2026-03-21T12:49:02,457 no previously-included directories found matching '.github' 2026-03-21T12:49:02,460 no previously-included directories found matching '.claude' 2026-03-21T12:49:02,464 no previously-included directories found matching '.pytest_cache' 2026-03-21T12:49:02,467 no previously-included directories found matching '.ruff_cache' 2026-03-21T12:49:02,470 no previously-included directories found matching '.vscode' 2026-03-21T12:49:02,474 no previously-included directories found matching 'docs' 2026-03-21T12:49:02,477 no previously-included directories found matching 'tests' 2026-03-21T12:49:02,480 no previously-included directories found matching 'OvIntelligence' 2026-03-21T12:49:02,483 no previously-included directories found matching 'READMEM' 2026-03-21T12:49:02,487 no previously-included directories found matching 'omicverse_guide' 2026-03-21T12:49:02,490 no previously-included directories found matching 'omicverse_web' 2026-03-21T12:49:02,493 no previously-included directories found matching 'tmp' 2026-03-21T12:49:02,497 no previously-included directories found matching 'tmp_omicverse' 2026-03-21T12:49:02,500 no previously-included directories found matching 'Skill_Seekers' 2026-03-21T12:49:02,506 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-21T12:49:02,514 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-21T12:49:02,520 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-21T12:49:02,521 adding license file 'LICENSE' 2026-03-21T12:49:02,591 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-21T12:49:02,691 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-21T12:49:02,694 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-21T12:49:02,699 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-21T12:49:02,701 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-21T12:49:02,812 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-21T12:49:02,815 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-21T12:49:02,817 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-21T12:49:02,820 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-21T12:49:02,823 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-21T12:49:02,825 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-21T12:49:02,828 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:49:02,834 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:49:02,836 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:49:02,840 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-21T12:49:02,843 creating build/lib/omicverse/llm/scfoundation/models 2026-03-21T12:49:02,844 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-21T12:49:02,846 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:02,902 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:02,929 creating build/lib/omicverse/data_files/TF 2026-03-21T12:49:02,930 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-21T12:49:02,933 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-21T12:49:02,936 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-21T12:49:02,960 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-21T12:49:02,992 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-21T12:49:03,014 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-21T12:49:03,017 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-21T12:49:03,019 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-21T12:49:03,022 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-21T12:49:03,024 creating build/lib/omicverse/single/templates/img 2026-03-21T12:49:03,025 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-21T12:49:03,027 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-21T12:49:03,030 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-21T12:49:03,034 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-21T12:49:03,038 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-21T12:49:03,040 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-21T12:49:03,043 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-21T12:49:03,045 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-21T12:49:03,047 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:03,053 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:03,054 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:03,322 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:03,328 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:03,339 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:04,015 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:04,047 creating build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,048 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,051 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,053 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,056 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,059 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,062 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,064 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,067 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,070 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,073 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,075 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,078 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-21T12:49:04,081 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:04,082 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:04,092 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:04,102 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:04,110 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:04,111 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:04,129 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:04,183 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:04,200 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:04,202 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:04,206 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:04,209 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:04,210 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:04,214 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:04,218 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:04,222 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-21T12:49:04,224 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:49:04,227 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:49:04,230 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:49:04,232 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-21T12:49:04,235 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-21T12:49:04,346 installing to build/bdist.linux-armv7l/wheel 2026-03-21T12:49:04,346 running install 2026-03-21T12:49:04,370 running install_lib 2026-03-21T12:49:04,376 creating build/bdist.linux-armv7l/wheel 2026-03-21T12:49:04,379 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-21T12:49:04,381 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-21T12:49:04,383 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-21T12:49:04,384 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-21T12:49:04,386 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-21T12:49:04,388 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-21T12:49:04,391 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,393 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,397 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,399 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,401 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,404 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,406 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,408 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,411 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,413 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,415 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,418 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,421 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,424 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,426 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,430 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,432 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,435 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,438 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,440 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,443 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,445 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,449 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-21T12:49:04,452 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-21T12:49:04,453 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,455 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,458 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,460 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,463 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,466 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,469 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,472 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,474 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,476 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-21T12:49:04,480 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-21T12:49:04,482 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-21T12:49:04,483 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,487 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,490 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,493 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,496 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,499 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,501 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,506 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,507 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,511 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,513 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,515 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-21T12:49:04,519 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,520 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,523 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,524 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,526 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,528 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,531 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,533 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-21T12:49:04,536 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-21T12:49:04,538 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,539 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,541 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,544 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,546 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,548 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,551 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,553 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-21T12:49:04,555 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,558 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,564 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,566 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,568 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,570 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,572 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,574 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-21T12:49:04,577 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-21T12:49:04,578 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-21T12:49:04,580 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,584 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,587 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,590 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-21T12:49:04,592 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-21T12:49:04,594 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-21T12:49:04,596 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-21T12:49:04,598 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-21T12:49:04,600 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-21T12:49:04,602 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-21T12:49:04,604 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,606 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-21T12:49:04,607 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-21T12:49:04,610 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-21T12:49:04,613 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,615 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,617 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,620 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-21T12:49:04,621 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-21T12:49:04,624 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,626 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-21T12:49:04,629 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-21T12:49:04,630 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-21T12:49:04,632 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-21T12:49:04,634 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-21T12:49:04,637 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-21T12:49:04,638 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-21T12:49:04,640 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-21T12:49:04,642 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-21T12:49:04,644 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,646 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,651 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-21T12:49:04,653 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,655 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,657 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,660 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,662 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,664 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-21T12:49:04,667 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-21T12:49:04,668 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-21T12:49:04,671 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-21T12:49:04,673 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-21T12:49:04,676 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,677 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,680 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,681 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,684 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,687 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-21T12:49:04,690 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-21T12:49:04,691 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-21T12:49:04,694 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-21T12:49:04,696 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-21T12:49:04,698 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-21T12:49:04,700 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-21T12:49:04,702 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-21T12:49:04,704 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-21T12:49:04,707 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-21T12:49:04,709 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-21T12:49:04,711 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-21T12:49:04,714 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-21T12:49:04,716 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-21T12:49:04,718 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-21T12:49:04,720 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-21T12:49:04,722 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-21T12:49:04,725 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,726 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,729 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,731 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,733 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,737 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,740 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-21T12:49:04,743 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-21T12:49:04,745 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-21T12:49:04,748 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-21T12:49:04,750 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-21T12:49:04,753 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-21T12:49:04,754 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-21T12:49:04,756 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-21T12:49:04,759 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,762 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-21T12:49:04,763 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,766 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,769 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,771 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,774 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,776 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,778 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,781 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,783 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,786 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-21T12:49:04,789 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-21T12:49:04,791 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,794 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,797 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,799 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,802 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,804 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-21T12:49:04,807 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-21T12:49:04,808 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-21T12:49:04,811 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-21T12:49:04,813 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,817 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-21T12:49:04,818 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-21T12:49:04,821 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-21T12:49:04,823 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-21T12:49:04,826 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-21T12:49:04,828 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:04,836 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:04,859 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:04,861 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:04,865 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-21T12:49:04,882 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-21T12:49:04,883 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-21T12:49:04,885 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-21T12:49:04,887 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-21T12:49:04,890 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-21T12:49:04,891 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,894 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,895 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,897 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,899 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,902 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,904 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-21T12:49:04,906 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,908 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,909 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,911 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,913 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-21T12:49:04,915 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,919 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,922 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,924 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,927 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-21T12:49:04,928 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-21T12:49:04,929 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-21T12:49:04,931 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-21T12:49:04,933 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-21T12:49:04,934 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-21T12:49:04,937 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,940 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-21T12:49:04,944 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:04,947 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-21T12:49:04,949 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-21T12:49:04,950 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,952 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,954 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,957 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,959 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,961 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,963 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,966 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-21T12:49:04,968 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-21T12:49:04,970 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-21T12:49:04,972 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-21T12:49:04,975 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-21T12:49:04,977 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-21T12:49:04,980 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:04,982 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-21T12:49:04,983 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-21T12:49:04,986 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-21T12:49:04,988 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-21T12:49:04,991 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-21T12:49:04,992 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-21T12:49:05,085 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-21T12:49:05,086 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-21T12:49:05,090 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-21T12:49:05,102 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-21T12:49:05,117 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-21T12:49:05,132 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-21T12:49:05,135 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-21T12:49:05,137 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-21T12:49:05,139 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-21T12:49:05,141 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-21T12:49:05,147 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-21T12:49:05,149 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-21T12:49:05,150 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,154 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,158 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,160 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,163 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,166 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-21T12:49:05,169 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,172 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,175 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,177 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,180 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,183 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,185 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,187 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,189 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,192 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-21T12:49:05,193 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-21T12:49:05,196 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-21T12:49:05,198 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-21T12:49:05,201 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-21T12:49:05,202 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-21T12:49:05,204 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-21T12:49:05,207 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,210 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,212 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,216 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-21T12:49:05,217 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,220 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,222 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,224 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,226 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,228 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,231 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-21T12:49:05,233 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,236 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-21T12:49:05,239 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:05,244 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-21T12:49:05,246 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,249 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,252 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,257 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,308 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,312 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,316 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,321 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,324 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,327 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,332 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,336 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,341 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,344 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,354 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,358 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,362 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,366 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,370 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,374 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-21T12:49:05,380 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-21T12:49:05,381 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-21T12:49:05,383 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-21T12:49:05,386 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-21T12:49:05,388 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-21T12:49:05,390 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-21T12:49:05,393 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-21T12:49:05,395 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,398 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,402 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,404 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,407 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,410 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,412 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,414 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,417 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,420 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,422 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,424 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,427 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-21T12:49:05,432 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-21T12:49:05,433 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,435 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,437 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,440 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,442 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,444 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,446 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,449 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,451 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,453 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-21T12:49:05,456 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:05,460 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-21T12:49:05,461 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,464 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,467 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-21T12:49:05,469 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-21T12:49:05,471 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-21T12:49:05,473 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-21T12:49:05,476 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-21T12:49:05,478 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-21T12:49:05,481 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,483 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,486 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-21T12:49:05,488 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,491 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,493 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,496 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,498 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,501 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,503 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,505 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,508 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,510 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,512 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,515 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-21T12:49:05,518 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,521 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-21T12:49:05,523 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:05,526 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-21T12:49:05,528 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-21T12:49:05,530 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-21T12:49:05,533 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-21T12:49:05,536 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:05,539 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-21T12:49:05,541 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,543 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,547 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,549 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,552 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,554 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,557 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,559 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,562 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,566 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,570 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,573 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,575 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,578 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-21T12:49:05,582 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-21T12:49:05,584 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,587 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,590 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,594 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,602 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,605 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,608 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,611 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,614 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,618 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-21T12:49:05,620 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-21T12:49:05,621 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-21T12:49:05,625 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-21T12:49:05,628 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-21T12:49:05,632 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-21T12:49:05,634 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,636 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,638 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,640 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,643 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,646 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-21T12:49:05,648 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,652 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,655 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,658 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,661 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,664 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,667 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,670 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,673 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,675 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,679 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,681 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,687 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,691 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,693 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,697 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,699 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,704 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,707 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,710 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,713 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,716 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,720 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,757 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,760 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,763 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,766 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,768 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,771 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,773 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,776 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,778 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,782 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,784 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,787 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,789 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-21T12:49:05,792 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-21T12:49:05,793 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-21T12:49:05,797 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-21T12:49:05,799 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-21T12:49:05,801 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,804 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,806 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,808 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,810 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,812 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,814 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-21T12:49:05,816 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-21T12:49:05,817 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,819 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,822 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,824 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,827 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,829 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,831 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,833 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,835 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,838 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,840 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,843 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,845 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,847 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,849 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-21T12:49:05,852 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-21T12:49:05,852 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-21T12:49:05,855 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-21T12:49:05,857 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-21T12:49:05,859 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-21T12:49:05,862 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-21T12:49:05,863 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-21T12:49:05,865 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-21T12:49:05,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-21T12:49:05,871 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,873 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,875 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,876 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,878 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,880 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,883 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-21T12:49:05,885 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-21T12:49:05,886 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-21T12:49:05,888 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-21T12:49:05,891 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-21T12:49:05,893 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-21T12:49:05,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,896 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,898 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,901 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,904 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,906 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,909 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,910 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,913 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,918 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,921 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,924 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-21T12:49:05,926 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-21T12:49:05,928 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,930 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,932 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,933 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,935 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,938 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,940 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:05,943 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:05,944 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:06,047 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:06,136 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-21T12:49:06,141 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,142 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,144 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,146 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,148 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,150 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-21T12:49:06,152 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,153 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,156 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,158 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,160 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,162 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-21T12:49:06,165 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-21T12:49:06,166 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,168 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,170 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,172 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,174 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,176 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-21T12:49:06,179 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-21T12:49:06,180 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-21T12:49:06,183 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-21T12:49:06,186 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-21T12:49:06,189 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-21T12:49:06,191 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-21T12:49:06,194 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-21T12:49:06,195 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-21T12:49:06,198 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-21T12:49:06,200 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:06,202 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:06,205 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:06,233 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-21T12:49:06,734 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-21T12:49:06,736 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-21T12:49:06,737 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-21T12:49:06,740 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-21T12:49:06,742 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-21T12:49:06,743 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-21T12:49:06,746 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-21T12:49:06,747 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-21T12:49:06,750 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-21T12:49:06,751 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-21T12:49:06,754 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-21T12:49:06,755 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-21T12:49:06,757 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-21T12:49:06,759 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-21T12:49:06,761 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-21T12:49:06,764 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-21T12:49:06,765 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,767 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,770 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,772 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,775 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,778 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,780 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,782 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,785 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,787 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,790 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,791 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,794 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,796 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,799 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,801 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,803 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,806 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,809 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,811 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,813 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,816 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-21T12:49:06,818 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-21T12:49:06,819 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,822 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,824 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,825 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,828 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,830 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-21T12:49:06,832 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-21T12:49:06,835 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-21T12:49:06,836 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,839 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,841 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,843 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,846 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,848 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,850 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,852 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,854 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,856 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,859 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,861 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,864 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,865 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,868 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,870 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,873 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,875 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,877 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,879 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,882 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,884 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-21T12:49:06,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,888 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,891 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,893 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,895 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,897 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,900 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-21T12:49:06,904 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,909 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,914 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,915 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,917 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,920 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,923 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,925 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,927 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,929 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,931 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-21T12:49:06,934 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,936 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,938 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,940 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,942 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-21T12:49:06,944 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-21T12:49:06,946 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-21T12:49:06,948 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-21T12:49:06,950 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-21T12:49:06,952 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,954 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,957 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,959 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,961 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,964 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,966 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,968 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,970 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,973 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,975 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,978 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,979 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,981 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,983 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,985 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,987 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,989 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,991 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-21T12:49:06,993 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,996 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:06,998 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:07,000 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:07,002 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-21T12:49:07,005 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-21T12:49:07,010 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-21T12:49:07,011 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,016 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,020 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,023 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,028 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,033 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,036 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,038 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,041 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,043 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,046 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,048 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-21T12:49:07,051 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-21T12:49:07,052 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,055 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,058 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,060 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,063 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,064 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,067 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,069 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,071 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-21T12:49:07,074 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-21T12:49:07,076 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-21T12:49:07,077 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-21T12:49:07,079 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-21T12:49:07,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-21T12:49:07,083 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-21T12:49:07,085 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-21T12:49:07,087 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-21T12:49:07,088 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-21T12:49:07,091 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-21T12:49:07,092 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-21T12:49:07,095 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-21T12:49:07,097 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-21T12:49:07,099 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,100 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,103 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,106 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,107 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,109 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,111 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-21T12:49:07,113 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-21T12:49:07,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,116 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,118 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,121 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,123 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,125 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,127 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-21T12:49:07,129 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-21T12:49:07,130 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-21T12:49:07,133 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,134 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,137 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,139 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,141 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,143 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,146 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,148 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,151 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,153 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,156 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,158 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,160 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,163 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,164 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,167 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,169 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,171 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,173 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-21T12:49:07,175 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-21T12:49:07,177 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-21T12:49:07,179 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-21T12:49:07,182 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,183 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,185 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,187 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,189 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,191 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,193 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,196 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,198 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,200 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,202 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,203 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-21T12:49:07,205 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-21T12:49:07,207 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-21T12:49:07,209 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-21T12:49:07,211 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-21T12:49:07,212 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-21T12:49:07,216 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:07,217 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:07,225 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:07,226 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:07,251 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:07,276 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-21T12:49:07,299 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:07,308 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-21T12:49:07,318 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-21T12:49:07,320 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-21T12:49:07,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-21T12:49:07,325 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-21T12:49:07,326 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-21T12:49:07,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-21T12:49:07,330 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,333 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,336 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,338 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,341 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,343 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,345 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,348 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,350 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,352 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,354 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-21T12:49:07,357 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-21T12:49:07,358 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-21T12:49:07,361 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-21T12:49:07,362 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-21T12:49:07,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-21T12:49:07,367 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-21T12:49:07,369 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-21T12:49:07,371 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-21T12:49:07,380 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-21T12:49:07,386 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-21T12:49:07,391 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-21T12:49:07,392 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,395 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-21T12:49:07,396 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-21T12:49:07,398 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-21T12:49:07,401 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-21T12:49:07,403 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,406 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,408 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,411 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-21T12:49:07,412 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-21T12:49:07,414 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-21T12:49:07,416 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-21T12:49:07,418 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,421 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,423 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,425 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,427 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,429 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,431 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-21T12:49:07,432 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-21T12:49:07,434 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-21T12:49:07,436 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-21T12:49:07,437 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-21T12:49:07,439 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-21T12:49:07,441 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,443 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,445 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,447 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,449 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,451 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,453 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,459 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,461 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,463 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,465 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-21T12:49:07,467 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-21T12:49:07,468 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,472 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,475 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,477 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,480 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,481 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,485 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,487 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-21T12:49:07,491 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-21T12:49:07,495 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-21T12:49:07,498 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-21T12:49:07,502 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-21T12:49:07,505 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-21T12:49:07,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-21T12:49:07,510 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-21T12:49:07,513 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-21T12:49:07,517 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-21T12:49:07,520 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-21T12:49:07,523 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-21T12:49:07,525 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-21T12:49:07,527 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-21T12:49:07,529 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:07,531 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:07,537 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:07,543 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-21T12:49:07,549 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:07,550 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:07,554 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-21T12:49:07,558 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-21T12:49:07,561 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-21T12:49:07,563 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-21T12:49:07,567 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,568 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,571 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,574 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,577 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,579 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-21T12:49:07,582 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-21T12:49:07,583 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-21T12:49:07,586 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-21T12:49:07,588 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-21T12:49:07,591 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-21T12:49:07,594 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-21T12:49:07,596 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-21T12:49:07,600 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-21T12:49:07,601 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,604 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,610 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,615 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,621 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,626 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,629 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,632 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,635 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-21T12:49:07,639 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,641 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,645 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,648 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,650 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,653 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-21T12:49:07,655 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-21T12:49:07,657 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-21T12:49:07,659 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-21T12:49:07,663 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,664 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,667 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,669 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,673 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,675 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,677 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,680 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,683 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-21T12:49:07,686 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:49:07,688 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:49:07,690 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:49:07,693 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:49:07,695 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-21T12:49:07,698 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-21T12:49:07,699 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-21T12:49:07,701 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-21T12:49:07,704 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-21T12:49:07,707 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-21T12:49:07,709 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-21T12:49:07,711 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-21T12:49:07,714 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-21T12:49:07,717 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-21T12:49:07,719 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-21T12:49:07,722 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-21T12:49:07,724 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-21T12:49:07,728 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,730 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,734 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,737 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,739 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,742 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-21T12:49:07,744 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-21T12:49:07,746 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-21T12:49:07,748 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-21T12:49:07,751 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-21T12:49:07,754 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-21T12:49:07,757 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,758 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,760 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,763 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,767 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,769 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-21T12:49:07,773 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,775 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-21T12:49:07,777 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-21T12:49:07,779 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-21T12:49:07,782 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-21T12:49:07,784 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,787 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,790 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,793 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,796 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-21T12:49:07,797 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-21T12:49:07,799 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-21T12:49:07,802 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-21T12:49:07,804 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-21T12:49:07,807 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-21T12:49:07,808 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,811 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,813 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,815 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,817 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,819 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-21T12:49:07,822 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-21T12:49:07,823 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,825 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,828 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,829 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,832 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,834 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-21T12:49:07,835 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-21T12:49:07,837 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-21T12:49:07,839 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,841 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,843 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,845 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-21T12:49:07,847 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-21T12:49:07,848 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-21T12:49:07,850 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-21T12:49:07,852 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-21T12:49:07,855 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-21T12:49:07,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-21T12:49:07,858 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-21T12:49:07,860 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-21T12:49:07,862 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-21T12:49:07,864 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-21T12:49:07,866 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-21T12:49:07,868 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-21T12:49:07,870 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-21T12:49:07,872 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-21T12:49:07,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-21T12:49:07,876 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,878 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,880 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,882 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,885 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,887 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,889 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,891 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,892 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,895 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,897 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,900 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-21T12:49:07,902 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-21T12:49:07,903 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-21T12:49:07,905 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-21T12:49:07,907 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-21T12:49:07,910 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-21T12:49:07,911 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-21T12:49:07,913 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-21T12:49:07,915 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-21T12:49:07,916 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-21T12:49:07,919 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-21T12:49:07,921 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-21T12:49:07,922 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-21T12:49:07,925 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-21T12:49:07,927 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-21T12:49:07,929 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-21T12:49:07,931 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-21T12:49:07,934 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-21T12:49:07,935 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-21T12:49:07,937 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-21T12:49:07,940 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-21T12:49:07,942 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,943 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,946 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,947 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,949 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,952 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,953 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,956 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,958 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,960 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,962 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,964 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,966 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,968 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,970 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,972 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,974 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,976 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,978 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-21T12:49:07,980 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-21T12:49:07,983 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-21T12:49:07,984 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-21T12:49:07,986 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-21T12:49:07,988 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-21T12:49:07,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-21T12:49:07,992 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:07,994 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:07,995 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:07,997 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:07,999 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,001 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,003 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,005 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,007 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,009 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,011 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,013 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,015 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-21T12:49:08,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-21T12:49:08,019 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,021 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,023 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,025 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,026 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,028 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,030 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-21T12:49:08,032 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-21T12:49:08,033 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,036 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,038 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,040 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,042 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,044 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-21T12:49:08,047 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-21T12:49:08,048 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,050 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,052 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,054 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,057 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,058 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,060 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,063 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-21T12:49:08,066 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-21T12:49:08,067 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,070 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,072 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,073 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,075 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,078 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-21T12:49:08,080 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-21T12:49:08,081 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-21T12:49:08,083 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-21T12:49:08,086 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-21T12:49:08,089 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-21T12:49:08,090 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,092 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,095 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,097 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,099 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,101 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,104 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-21T12:49:08,105 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-21T12:49:08,107 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-21T12:49:08,109 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-21T12:49:08,111 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-21T12:49:08,114 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-21T12:49:08,115 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,117 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,119 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,122 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,125 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,127 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,129 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,131 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,134 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,136 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-21T12:49:08,140 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-21T12:49:08,141 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-21T12:49:08,142 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-21T12:49:08,144 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-21T12:49:08,147 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-21T12:49:08,149 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-21T12:49:08,151 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-21T12:49:08,152 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-21T12:49:08,154 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-21T12:49:08,156 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-21T12:49:08,159 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-21T12:49:08,162 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-21T12:49:08,164 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-21T12:49:08,165 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,168 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,170 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,173 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,176 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,178 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,182 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-21T12:49:08,183 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-21T12:49:08,185 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-21T12:49:08,188 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-21T12:49:08,190 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-21T12:49:08,191 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-21T12:49:08,194 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,196 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,198 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-21T12:49:08,201 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-21T12:49:08,202 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,206 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,211 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,213 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,219 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,227 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,235 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-21T12:49:08,238 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-21T12:49:08,239 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,242 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-21T12:49:08,243 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-21T12:49:08,245 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-21T12:49:08,247 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-21T12:49:08,249 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,251 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,253 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,255 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-21T12:49:08,256 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-21T12:49:08,258 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-21T12:49:08,260 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-21T12:49:08,262 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-21T12:49:08,264 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,266 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-21T12:49:08,268 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-21T12:49:08,269 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-21T12:49:08,271 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-21T12:49:08,273 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-21T12:49:08,276 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-21T12:49:08,277 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-21T12:49:08,279 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-21T12:49:08,280 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-21T12:49:08,283 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-21T12:49:08,285 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-21T12:49:08,287 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-21T12:49:08,289 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-21T12:49:08,290 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,293 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-21T12:49:08,296 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-21T12:49:08,298 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-21T12:49:08,301 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-21T12:49:08,302 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-21T12:49:08,304 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-21T12:49:08,307 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-21T12:49:08,308 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,311 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,313 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,314 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,317 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,319 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-21T12:49:08,321 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-21T12:49:08,324 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-21T12:49:08,325 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-21T12:49:08,327 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-21T12:49:08,329 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-21T12:49:08,331 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-21T12:49:08,334 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-21T12:49:08,335 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-21T12:49:08,336 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-21T12:49:08,341 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-21T12:49:08,342 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,345 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,348 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,350 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,353 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,355 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,358 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,359 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,361 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,363 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,365 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-21T12:49:08,368 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-21T12:49:08,369 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,372 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,374 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,377 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,379 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,382 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,384 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,386 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-21T12:49:08,389 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-21T12:49:08,390 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-21T12:49:08,392 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-21T12:49:08,395 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-21T12:49:08,397 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-21T12:49:08,398 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,402 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,404 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,407 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,410 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,412 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,414 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-21T12:49:08,417 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-21T12:49:08,418 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,421 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,422 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,425 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,427 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,429 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,431 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,433 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,435 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,437 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,440 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,442 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,444 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,445 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,448 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,450 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-21T12:49:08,452 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-21T12:49:08,454 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-21T12:49:08,456 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-21T12:49:08,458 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,461 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,464 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,466 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,477 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,479 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,481 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,484 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,487 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,490 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,493 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-21T12:49:08,497 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-21T12:49:08,498 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,501 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,504 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,507 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-21T12:49:08,508 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,511 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,514 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,516 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,518 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,521 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,524 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-21T12:49:08,527 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,533 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-21T12:49:08,534 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,537 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,540 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,543 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,545 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,547 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,550 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,553 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,556 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,558 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-21T12:49:08,561 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,564 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,566 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,569 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,571 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,573 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,575 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,578 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,581 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,584 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,586 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,589 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,591 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,593 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,595 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,598 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,601 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,603 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,606 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,611 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,614 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-21T12:49:08,615 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,617 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,619 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,622 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,624 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,627 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,629 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,631 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,633 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,636 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-21T12:49:08,639 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,642 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,645 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,647 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,649 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,652 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-21T12:49:08,653 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,656 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,658 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,661 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,663 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,666 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,669 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,671 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,673 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,676 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,679 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,681 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,684 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-21T12:49:08,686 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,688 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,690 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,693 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,695 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-21T12:49:08,699 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-21T12:49:08,700 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,702 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,705 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,707 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,709 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,711 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,713 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,716 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,718 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-21T12:49:08,721 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-21T12:49:08,724 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-21T12:49:08,725 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-21T12:49:08,726 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-21T12:49:08,729 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-21T12:49:08,731 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-21T12:49:08,733 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-21T12:49:08,736 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-21T12:49:08,737 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-21T12:49:08,739 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-21T12:49:08,741 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-21T12:49:08,743 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-21T12:49:08,745 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-21T12:49:08,746 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-21T12:49:08,749 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-21T12:49:08,751 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-21T12:49:08,753 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-21T12:49:08,756 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-21T12:49:08,757 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-21T12:49:08,759 running install_egg_info 2026-03-21T12:49:08,764 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.2-py3.11.egg-info 2026-03-21T12:49:08,778 running install_scripts 2026-03-21T12:49:08,791 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.2.dist-info/WHEEL 2026-03-21T12:49:08,794 creating '/tmp/pip-wheel-0p30c8a4/.tmp-nrcdbtnf/omicverse-2.0.2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-21T12:49:08,797 adding 'omicverse/__init__.py' 2026-03-21T12:49:08,799 adding 'omicverse/_lazy_loader.py' 2026-03-21T12:49:08,801 adding 'omicverse/_monitor.py' 2026-03-21T12:49:08,807 adding 'omicverse/_registry.py' 2026-03-21T12:49:08,812 adding 'omicverse/_settings.py' 2026-03-21T12:49:08,815 adding 'omicverse/claw.py' 2026-03-21T12:49:08,817 adding 'omicverse/cli.py' 2026-03-21T12:49:08,819 adding 'omicverse/agent/__init__.py' 2026-03-21T12:49:08,822 adding 'omicverse/alignment/STAR.py' 2026-03-21T12:49:08,823 adding 'omicverse/alignment/__init__.py' 2026-03-21T12:49:08,825 adding 'omicverse/alignment/_cli_utils.py' 2026-03-21T12:49:08,827 adding 'omicverse/alignment/fastp.py' 2026-03-21T12:49:08,829 adding 'omicverse/alignment/featureCount.py' 2026-03-21T12:49:08,831 adding 'omicverse/alignment/fq_dump.py' 2026-03-21T12:49:08,835 adding 'omicverse/alignment/kb_api.py' 2026-03-21T12:49:08,837 adding 'omicverse/alignment/pipeline.py' 2026-03-21T12:49:08,838 adding 'omicverse/alignment/prefetch.py' 2026-03-21T12:49:08,840 adding 'omicverse/biocontext/__init__.py' 2026-03-21T12:49:08,842 adding 'omicverse/biocontext/_client.py' 2026-03-21T12:49:08,845 adding 'omicverse/biocontext/_tools.py' 2026-03-21T12:49:08,849 adding 'omicverse/bulk/_Deseq2.py' 2026-03-21T12:49:08,853 adding 'omicverse/bulk/_Enrichment.py' 2026-03-21T12:49:08,856 adding 'omicverse/bulk/_Gene_module.py' 2026-03-21T12:49:08,857 adding 'omicverse/bulk/__init__.py' 2026-03-21T12:49:08,899 adding 'omicverse/bulk/_chm13.py' 2026-03-21T12:49:08,904 adding 'omicverse/bulk/_combat.py' 2026-03-21T12:49:08,906 adding 'omicverse/bulk/_decov.py' 2026-03-21T12:49:08,908 adding 'omicverse/bulk/_df_apply.py' 2026-03-21T12:49:08,913 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-21T12:49:08,915 adding 'omicverse/bulk/_network.py' 2026-03-21T12:49:08,917 adding 'omicverse/bulk/_tcga.py' 2026-03-21T12:49:08,919 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-21T12:49:08,921 adding 'omicverse/bulk2single/__init__.py' 2026-03-21T12:49:08,924 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-21T12:49:08,926 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-21T12:49:08,928 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-21T12:49:08,933 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-21T12:49:08,937 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-21T12:49:08,940 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-21T12:49:08,942 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-21T12:49:08,945 adding 'omicverse/bulk2single/_utils.py' 2026-03-21T12:49:08,947 adding 'omicverse/bulk2single/_vae.py' 2026-03-21T12:49:08,949 adding 'omicverse/data_files/README.md' 2026-03-21T12:49:08,989 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-21T12:49:08,992 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-21T12:49:09,510 adding 'omicverse/data_files/mart_export.txt' 2026-03-21T12:49:09,542 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-21T12:49:09,545 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-21T12:49:09,548 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-21T12:49:09,571 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-21T12:49:09,613 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-21T12:49:09,654 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-21T12:49:09,660 adding 'omicverse/datasets/__init__.py' 2026-03-21T12:49:09,666 adding 'omicverse/datasets/_datasets.py' 2026-03-21T12:49:09,668 adding 'omicverse/datasets/_signatures.py' 2026-03-21T12:49:09,670 adding 'omicverse/external/__init__.py' 2026-03-21T12:49:09,672 adding 'omicverse/external/BINARY/Model.py' 2026-03-21T12:49:09,674 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-21T12:49:09,675 adding 'omicverse/external/BINARY/__init__.py' 2026-03-21T12:49:09,678 adding 'omicverse/external/BINARY/utils.py' 2026-03-21T12:49:09,680 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-21T12:49:09,683 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-21T12:49:09,687 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-21T12:49:09,688 adding 'omicverse/external/CAST/__init__.py' 2026-03-21T12:49:09,690 adding 'omicverse/external/CAST/main.py' 2026-03-21T12:49:09,693 adding 'omicverse/external/CAST/utils.py' 2026-03-21T12:49:09,695 adding 'omicverse/external/CAST/visualize.py' 2026-03-21T12:49:09,696 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-21T12:49:09,698 adding 'omicverse/external/CAST/model/aug.py' 2026-03-21T12:49:09,699 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-21T12:49:09,701 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-21T12:49:09,702 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-21T12:49:09,704 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-21T12:49:09,707 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-21T12:49:09,710 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-21T12:49:09,712 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-21T12:49:09,714 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-21T12:49:09,716 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-21T12:49:09,719 adding 'omicverse/external/CEFCON/utils.py' 2026-03-21T12:49:09,721 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-21T12:49:09,723 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-21T12:49:09,725 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-21T12:49:09,728 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-21T12:49:09,730 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-21T12:49:09,732 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-21T12:49:09,734 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-21T12:49:09,736 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-21T12:49:09,738 adding 'omicverse/external/GNTD/_utils.py' 2026-03-21T12:49:09,741 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-21T12:49:09,742 adding 'omicverse/external/GraphST/__init__.py' 2026-03-21T12:49:09,743 adding 'omicverse/external/GraphST/model.py' 2026-03-21T12:49:09,745 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-21T12:49:09,746 adding 'omicverse/external/GraphST/readme.txt' 2026-03-21T12:49:09,748 adding 'omicverse/external/GraphST/utils.py' 2026-03-21T12:49:09,750 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-21T12:49:09,751 adding 'omicverse/external/NaiveDE/base.py' 2026-03-21T12:49:09,753 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-21T12:49:09,754 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-21T12:49:09,756 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-21T12:49:09,757 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-21T12:49:09,759 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-21T12:49:09,761 adding 'omicverse/external/PROST/PROST.py' 2026-03-21T12:49:09,762 adding 'omicverse/external/PROST/__init__.py' 2026-03-21T12:49:09,764 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-21T12:49:09,766 adding 'omicverse/external/PROST/layers.py' 2026-03-21T12:49:09,768 adding 'omicverse/external/PROST/model.py' 2026-03-21T12:49:09,769 adding 'omicverse/external/PROST/plot.py' 2026-03-21T12:49:09,773 adding 'omicverse/external/PROST/utils.py' 2026-03-21T12:49:09,774 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-21T12:49:09,777 adding 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