2026-03-23T07:15:07,017 Created temporary directory: /tmp/pip-ephem-wheel-cache-ahzr0bnq 2026-03-23T07:15:07,019 Created temporary directory: /tmp/pip-build-tracker-fulh50nj 2026-03-23T07:15:07,019 Initialized build tracking at /tmp/pip-build-tracker-fulh50nj 2026-03-23T07:15:07,020 Created build tracker: /tmp/pip-build-tracker-fulh50nj 2026-03-23T07:15:07,020 Entered build tracker: /tmp/pip-build-tracker-fulh50nj 2026-03-23T07:15:07,021 Created temporary directory: /tmp/pip-wheel-zoxxn8mb 2026-03-23T07:15:07,024 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-23T07:15:07,026 Created temporary directory: /tmp/pip-ephem-wheel-cache-dk9624ie 2026-03-23T07:15:07,048 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-23T07:15:07,051 2 location(s) to search for versions of omicverse: 2026-03-23T07:15:07,051 * https://pypi.org/simple/omicverse/ 2026-03-23T07:15:07,051 * https://www.piwheels.org/simple/omicverse/ 2026-03-23T07:15:07,052 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-23T07:15:07,053 Getting page https://pypi.org/simple/omicverse/ 2026-03-23T07:15:07,054 Found index url https://pypi.org/simple 2026-03-23T07:15:07,266 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-23T07:15:07,287 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-23T07:15:07,586 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-23T07:15:07,587 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-23T07:15:07,587 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-23T07:15:07,588 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-23T07:15:07,588 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-23T07:15:07,589 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-23T07:15:07,614 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-23T07:15:07,632 Collecting omicverse==2.0.3 2026-03-23T07:15:07,635 Created temporary directory: /tmp/pip-unpack-nzhxa4u2 2026-03-23T07:15:07,768 Downloading omicverse-2.0.3.tar.gz (11.8 MB) 2026-03-23T07:15:13,247 Added omicverse==2.0.3 from https://files.pythonhosted.org/packages/0d/c8/be5409d6e1ae1511ad7aeb1c6c406e658d9197570d1952f9140b8987f6af/omicverse-2.0.3.tar.gz to build tracker '/tmp/pip-build-tracker-fulh50nj' 2026-03-23T07:15:13,255 Created temporary directory: /tmp/pip-build-env-2sk1x0q3 2026-03-23T07:15:13,259 Installing build dependencies: started 2026-03-23T07:15:13,260 Running command pip subprocess to install build dependencies 2026-03-23T07:15:14,389 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-23T07:15:15,003 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-23T07:15:15,026 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-23T07:15:16,767 Collecting setuptools>=61 2026-03-23T07:15:16,889 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-23T07:15:17,174 Collecting wheel 2026-03-23T07:15:17,189 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-23T07:15:19,234 Collecting Cython 2026-03-23T07:15:20,053 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-23T07:15:20,545 Collecting packaging>=24.0 2026-03-23T07:15:20,562 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-23T07:15:23,524 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-23T07:15:31,031 Creating /tmp/pip-build-env-2sk1x0q3/overlay/local/bin 2026-03-23T07:15:31,033 changing mode of /tmp/pip-build-env-2sk1x0q3/overlay/local/bin/cygdb to 755 2026-03-23T07:15:31,035 changing mode of /tmp/pip-build-env-2sk1x0q3/overlay/local/bin/cython to 755 2026-03-23T07:15:31,037 changing mode of /tmp/pip-build-env-2sk1x0q3/overlay/local/bin/cythonize to 755 2026-03-23T07:15:31,169 changing mode of /tmp/pip-build-env-2sk1x0q3/overlay/local/bin/wheel to 755 2026-03-23T07:15:31,197 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-23T07:15:31,590 Installing build dependencies: finished with status 'done' 2026-03-23T07:15:31,597 Getting requirements to build wheel: started 2026-03-23T07:15:31,598 Running command Getting requirements to build wheel 2026-03-23T07:15:32,328 /tmp/pip-build-env-2sk1x0q3/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-23T07:15:32,328 !! 2026-03-23T07:15:32,329 ******************************************************************************** 2026-03-23T07:15:32,330 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-23T07:15:32,331 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-23T07:15:32,331 or your builds will no longer be supported. 2026-03-23T07:15:32,332 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-23T07:15:32,333 ******************************************************************************** 2026-03-23T07:15:32,334 !! 2026-03-23T07:15:32,334 corresp(dist, value, root_dir) 2026-03-23T07:15:32,626 running egg_info 2026-03-23T07:15:32,632 writing omicverse.egg-info/PKG-INFO 2026-03-23T07:15:32,651 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-23T07:15:32,653 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-23T07:15:32,662 writing requirements to omicverse.egg-info/requires.txt 2026-03-23T07:15:32,663 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-23T07:15:32,920 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:33,011 reading manifest template 'MANIFEST.in' 2026-03-23T07:15:33,955 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-23T07:15:35,304 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-23T07:15:35,789 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-23T07:15:39,782 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-23T07:15:40,244 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-23T07:15:40,711 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-23T07:15:41,146 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-23T07:15:41,619 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-23T07:15:42,059 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-23T07:15:42,580 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-23T07:15:42,583 no previously-included directories found matching '.git' 2026-03-23T07:15:42,586 no previously-included directories found matching '.github' 2026-03-23T07:15:42,589 no previously-included directories found matching '.claude' 2026-03-23T07:15:42,592 no previously-included directories found matching '.pytest_cache' 2026-03-23T07:15:42,594 no previously-included directories found matching '.ruff_cache' 2026-03-23T07:15:42,597 no previously-included directories found matching '.vscode' 2026-03-23T07:15:42,600 no previously-included directories found matching 'docs' 2026-03-23T07:15:42,603 no previously-included directories found matching 'tests' 2026-03-23T07:15:42,606 no previously-included directories found matching 'OvIntelligence' 2026-03-23T07:15:42,609 no previously-included directories found matching 'READMEM' 2026-03-23T07:15:42,612 no previously-included directories found matching 'omicverse_guide' 2026-03-23T07:15:42,615 no previously-included directories found matching 'omicverse_web' 2026-03-23T07:15:42,617 no previously-included directories found matching 'tmp' 2026-03-23T07:15:42,620 no previously-included directories found matching 'tmp_omicverse' 2026-03-23T07:15:42,623 no previously-included directories found matching 'Skill_Seekers' 2026-03-23T07:15:42,629 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-23T07:15:42,636 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-23T07:15:42,642 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-23T07:15:42,643 adding license file 'LICENSE' 2026-03-23T07:15:42,715 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:42,834 Getting requirements to build wheel: finished with status 'done' 2026-03-23T07:15:42,838 Created temporary directory: /tmp/pip-modern-metadata-lqxj2bxv 2026-03-23T07:15:42,841 Preparing metadata (pyproject.toml): started 2026-03-23T07:15:42,842 Running command Preparing metadata (pyproject.toml) 2026-03-23T07:15:43,533 /tmp/pip-build-env-2sk1x0q3/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-23T07:15:43,533 !! 2026-03-23T07:15:43,534 ******************************************************************************** 2026-03-23T07:15:43,535 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-23T07:15:43,536 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-23T07:15:43,537 or your builds will no longer be supported. 2026-03-23T07:15:43,538 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-23T07:15:43,539 ******************************************************************************** 2026-03-23T07:15:43,540 !! 2026-03-23T07:15:43,541 corresp(dist, value, root_dir) 2026-03-23T07:15:43,832 running dist_info 2026-03-23T07:15:43,844 creating /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info 2026-03-23T07:15:43,845 writing /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/PKG-INFO 2026-03-23T07:15:43,863 writing dependency_links to /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/dependency_links.txt 2026-03-23T07:15:43,865 writing entry points to /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/entry_points.txt 2026-03-23T07:15:43,874 writing requirements to /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/requires.txt 2026-03-23T07:15:43,875 writing top-level names to /tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/top_level.txt 2026-03-23T07:15:43,877 writing manifest file '/tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:44,086 reading manifest file '/tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:44,088 reading manifest template 'MANIFEST.in' 2026-03-23T07:15:45,035 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-23T07:15:46,844 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-23T07:15:47,309 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-23T07:15:52,041 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-23T07:15:52,599 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-23T07:15:53,054 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-23T07:15:53,519 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-23T07:15:53,985 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-23T07:15:54,498 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-23T07:15:54,953 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-23T07:15:54,955 no previously-included directories found matching '.git' 2026-03-23T07:15:54,958 no previously-included directories found matching '.github' 2026-03-23T07:15:54,960 no previously-included directories found matching '.claude' 2026-03-23T07:15:54,962 no previously-included directories found matching '.pytest_cache' 2026-03-23T07:15:54,964 no previously-included directories found matching '.ruff_cache' 2026-03-23T07:15:54,966 no previously-included directories found matching '.vscode' 2026-03-23T07:15:54,968 no previously-included directories found matching 'docs' 2026-03-23T07:15:54,970 no previously-included directories found matching 'tests' 2026-03-23T07:15:54,972 no previously-included directories found matching 'OvIntelligence' 2026-03-23T07:15:54,974 no previously-included directories found matching 'READMEM' 2026-03-23T07:15:54,976 no previously-included directories found matching 'omicverse_guide' 2026-03-23T07:15:54,978 no previously-included directories found matching 'omicverse_web' 2026-03-23T07:15:54,980 no previously-included directories found matching 'tmp' 2026-03-23T07:15:54,983 no previously-included directories found matching 'tmp_omicverse' 2026-03-23T07:15:54,985 no previously-included directories found matching 'Skill_Seekers' 2026-03-23T07:15:54,989 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-23T07:15:54,994 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-23T07:15:54,998 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-23T07:15:54,999 adding license file 'LICENSE' 2026-03-23T07:15:55,074 writing manifest file '/tmp/pip-modern-metadata-lqxj2bxv/omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:55,077 creating '/tmp/pip-modern-metadata-lqxj2bxv/omicverse-2.0.3.dist-info' 2026-03-23T07:15:55,239 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-23T07:15:55,254 Source in /tmp/pip-wheel-zoxxn8mb/omicverse_feb60dd440224d63b2e13bedd54457e2 has version 2.0.3, which satisfies requirement omicverse==2.0.3 from https://files.pythonhosted.org/packages/0d/c8/be5409d6e1ae1511ad7aeb1c6c406e658d9197570d1952f9140b8987f6af/omicverse-2.0.3.tar.gz 2026-03-23T07:15:55,256 Removed omicverse==2.0.3 from https://files.pythonhosted.org/packages/0d/c8/be5409d6e1ae1511ad7aeb1c6c406e658d9197570d1952f9140b8987f6af/omicverse-2.0.3.tar.gz from build tracker '/tmp/pip-build-tracker-fulh50nj' 2026-03-23T07:15:55,280 Created temporary directory: /tmp/pip-unpack-ks9cg2m7 2026-03-23T07:15:55,280 Building wheels for collected packages: omicverse 2026-03-23T07:15:55,285 Created temporary directory: /tmp/pip-wheel-c7jf8cmr 2026-03-23T07:15:55,286 Destination directory: /tmp/pip-wheel-c7jf8cmr 2026-03-23T07:15:55,288 Building wheel for omicverse (pyproject.toml): started 2026-03-23T07:15:55,289 Running command Building wheel for omicverse (pyproject.toml) 2026-03-23T07:15:55,937 /tmp/pip-build-env-2sk1x0q3/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-23T07:15:55,938 !! 2026-03-23T07:15:55,939 ******************************************************************************** 2026-03-23T07:15:55,940 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-23T07:15:55,941 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-23T07:15:55,941 or your builds will no longer be supported. 2026-03-23T07:15:55,943 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-23T07:15:55,943 ******************************************************************************** 2026-03-23T07:15:55,945 !! 2026-03-23T07:15:55,945 corresp(dist, value, root_dir) 2026-03-23T07:15:56,211 running bdist_wheel 2026-03-23T07:15:56,230 running build 2026-03-23T07:15:56,231 running build_py 2026-03-23T07:15:56,237 creating build/lib/omicverse 2026-03-23T07:15:56,240 copying omicverse/cli.py -> build/lib/omicverse 2026-03-23T07:15:56,242 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-23T07:15:56,244 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-23T07:15:56,247 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-23T07:15:56,249 copying omicverse/claw.py -> build/lib/omicverse 2026-03-23T07:15:56,252 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-23T07:15:56,255 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-23T07:15:56,259 creating build/lib/omicverse/single 2026-03-23T07:15:56,260 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-23T07:15:56,263 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-23T07:15:56,266 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-23T07:15:56,269 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-23T07:15:56,272 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-23T07:15:56,275 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-23T07:15:56,278 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-23T07:15:56,280 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-23T07:15:56,283 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-23T07:15:56,287 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-23T07:15:56,290 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-23T07:15:56,293 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-23T07:15:56,294 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-23T07:15:56,301 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-23T07:15:56,303 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-23T07:15:56,306 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-23T07:15:56,309 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-23T07:15:56,312 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-23T07:15:56,315 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-23T07:15:56,318 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-23T07:15:56,320 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-23T07:15:56,323 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-23T07:15:56,326 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-23T07:15:56,328 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-23T07:15:56,332 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-23T07:15:56,335 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-23T07:15:56,337 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-23T07:15:56,340 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-23T07:15:56,342 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-23T07:15:56,345 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-23T07:15:56,348 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-23T07:15:56,351 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-23T07:15:56,354 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-23T07:15:56,356 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-23T07:15:56,359 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-23T07:15:56,362 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-23T07:15:56,364 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-23T07:15:56,367 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-23T07:15:56,370 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-23T07:15:56,372 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-23T07:15:56,375 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-23T07:15:56,377 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-23T07:15:56,380 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-23T07:15:56,383 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-23T07:15:56,389 creating build/lib/omicverse/bulk 2026-03-23T07:15:56,390 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,393 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,396 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,399 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,402 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,404 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,407 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,410 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,412 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,413 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,415 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-23T07:15:56,428 creating build/lib/omicverse/utils 2026-03-23T07:15:56,429 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,431 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,434 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,436 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,439 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,441 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,444 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,447 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,449 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,453 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,456 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,460 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,462 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,465 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,468 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,471 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,477 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,479 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,481 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,484 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,486 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,489 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,491 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,494 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,496 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,498 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,500 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,504 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,506 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,508 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,510 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,512 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,514 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,519 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-23T07:15:56,522 creating build/lib/omicverse/bulk2single 2026-03-23T07:15:56,523 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,525 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,528 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,530 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,533 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,536 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,538 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,541 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,544 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,546 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-23T07:15:56,549 creating build/lib/omicverse/biocontext 2026-03-23T07:15:56,550 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-23T07:15:56,553 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-23T07:15:56,555 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-23T07:15:56,558 creating build/lib/omicverse/mcp 2026-03-23T07:15:56,559 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,561 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,564 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,566 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,569 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,573 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,575 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,577 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,579 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,582 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,584 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,587 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,589 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-23T07:15:56,592 creating build/lib/omicverse/fm 2026-03-23T07:15:56,593 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-23T07:15:56,596 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-23T07:15:56,598 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-23T07:15:56,601 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-23T07:15:56,603 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-23T07:15:56,607 creating build/lib/omicverse/pl 2026-03-23T07:15:56,608 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,612 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,614 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,619 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,621 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,623 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,627 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,629 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,632 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,636 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,639 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,642 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,645 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,648 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,653 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,656 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,659 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,662 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,664 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,668 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-23T07:15:56,671 creating build/lib/omicverse/space 2026-03-23T07:15:56,672 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-23T07:15:56,675 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-23T07:15:56,678 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-23T07:15:56,680 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-23T07:15:56,684 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-23T07:15:56,688 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-23T07:15:56,691 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-23T07:15:56,694 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-23T07:15:56,697 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-23T07:15:56,700 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-23T07:15:56,703 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-23T07:15:56,705 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-23T07:15:56,707 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-23T07:15:56,709 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-23T07:15:56,712 creating build/lib/omicverse/pp 2026-03-23T07:15:56,713 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,716 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,718 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,721 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,723 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,726 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,729 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,732 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,736 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,738 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,741 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,743 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,745 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,749 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,752 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,755 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,757 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,760 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,762 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,764 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,767 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,769 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,775 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-23T07:15:56,780 creating build/lib/omicverse/alignment 2026-03-23T07:15:56,781 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,783 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,786 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,788 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,791 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,793 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,795 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,798 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,799 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-23T07:15:56,802 creating build/lib/omicverse/popv 2026-03-23T07:15:56,803 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,805 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,808 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,810 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,813 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,815 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-23T07:15:56,818 creating build/lib/omicverse/jarvis 2026-03-23T07:15:56,819 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,822 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,825 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,828 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,831 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,834 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,836 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,838 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,840 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,843 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-23T07:15:56,845 creating build/lib/omicverse/external 2026-03-23T07:15:56,846 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-23T07:15:56,850 creating build/lib/omicverse/llm 2026-03-23T07:15:56,851 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,856 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,858 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,862 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,866 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,868 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,870 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,873 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,877 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,882 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,884 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,887 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-23T07:15:56,890 creating build/lib/omicverse/data_files 2026-03-23T07:15:56,891 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-23T07:15:56,894 creating build/lib/omicverse/io 2026-03-23T07:15:56,895 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-23T07:15:56,897 creating build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,898 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,900 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,903 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,905 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,907 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,909 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,912 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,913 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,916 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:15:56,918 creating build/lib/omicverse/agent 2026-03-23T07:15:56,919 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-23T07:15:56,922 creating build/lib/omicverse/datasets 2026-03-23T07:15:56,923 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-23T07:15:56,925 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-23T07:15:56,929 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-23T07:15:56,931 creating build/lib/omicverse/single/templates 2026-03-23T07:15:56,932 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-23T07:15:56,934 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-23T07:15:56,937 creating build/lib/omicverse/bulk/_alignment 2026-03-23T07:15:56,938 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-23T07:15:56,941 creating build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,942 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,945 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,947 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,950 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,952 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,954 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,957 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,960 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,963 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,966 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-23T07:15:56,968 creating build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,969 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,972 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,974 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,977 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,979 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,982 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,984 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,986 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,989 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-23T07:15:56,991 creating build/lib/omicverse/utils/harness 2026-03-23T07:15:56,992 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:56,995 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:56,997 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:57,000 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:57,002 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:57,005 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:57,007 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-23T07:15:57,011 creating build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,012 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,015 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,017 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,020 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,022 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,025 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,028 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,031 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,033 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,036 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,038 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,041 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,043 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-23T07:15:57,046 creating build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,047 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,050 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,052 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,054 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,056 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-23T07:15:57,059 creating build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,060 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,062 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,064 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,065 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,068 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,070 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,072 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,074 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-23T07:15:57,076 creating build/lib/omicverse/pp/experimental 2026-03-23T07:15:57,077 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-23T07:15:57,080 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-23T07:15:57,083 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-23T07:15:57,085 creating build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,086 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,088 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,091 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,093 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,095 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,097 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,099 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,102 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,104 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,106 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,109 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,111 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-23T07:15:57,113 creating build/lib/omicverse/popv/hub 2026-03-23T07:15:57,115 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-23T07:15:57,117 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-23T07:15:57,119 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-23T07:15:57,121 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-23T07:15:57,124 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-23T07:15:57,126 creating build/lib/omicverse/jarvis/gateway 2026-03-23T07:15:57,127 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-23T07:15:57,129 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-23T07:15:57,131 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-23T07:15:57,133 creating build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,134 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,137 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,141 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,143 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,146 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,149 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,151 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-23T07:15:57,154 creating build/lib/omicverse/jarvis/memory 2026-03-23T07:15:57,155 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-23T07:15:57,158 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-23T07:15:57,160 creating build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,161 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,163 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,165 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,166 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,168 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,171 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,173 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-23T07:15:57,175 creating build/lib/omicverse/external/cellanova 2026-03-23T07:15:57,176 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-23T07:15:57,178 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-23T07:15:57,183 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-23T07:15:57,185 creating build/lib/omicverse/external/palantir 2026-03-23T07:15:57,187 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,189 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,191 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,193 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,195 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,198 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,200 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,203 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,204 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,207 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,211 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-23T07:15:57,213 creating build/lib/omicverse/external/harmony 2026-03-23T07:15:57,214 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-23T07:15:57,217 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-23T07:15:57,219 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-23T07:15:57,221 creating build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,222 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,224 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,226 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,228 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,230 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,231 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,234 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,236 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,238 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,240 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,243 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,244 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,247 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,248 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,250 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,252 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,254 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,256 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,258 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,261 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,262 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-23T07:15:57,265 creating build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,266 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,268 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,271 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,274 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,276 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,279 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,281 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,284 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,287 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-23T07:15:57,290 creating build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,291 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,293 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,295 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,297 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,300 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,301 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,303 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-23T07:15:57,305 creating build/lib/omicverse/external/tosica 2026-03-23T07:15:57,306 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-23T07:15:57,308 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-23T07:15:57,311 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-23T07:15:57,313 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-23T07:15:57,315 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-23T07:15:57,317 creating build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,318 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,321 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,324 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,326 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,328 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,331 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,333 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,336 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,339 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,340 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-23T07:15:57,344 creating build/lib/omicverse/external/CAST 2026-03-23T07:15:57,345 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,347 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,350 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,353 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,355 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,357 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,360 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-23T07:15:57,362 creating build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,364 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,367 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,369 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,371 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,374 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-23T07:15:57,376 creating build/lib/omicverse/external/cnmf 2026-03-23T07:15:57,377 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-23T07:15:57,380 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-23T07:15:57,384 creating build/lib/omicverse/external/bulk2single 2026-03-23T07:15:57,385 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-23T07:15:57,387 creating build/lib/omicverse/external/somde 2026-03-23T07:15:57,388 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-23T07:15:57,390 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-23T07:15:57,392 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-23T07:15:57,395 creating build/lib/omicverse/external/VIA 2026-03-23T07:15:57,396 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,399 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,403 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,409 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,415 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,417 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,423 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-23T07:15:57,426 creating build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,427 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,429 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,431 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,433 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,436 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,439 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:15:57,441 creating build/lib/omicverse/external/scMulan 2026-03-23T07:15:57,442 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-23T07:15:57,445 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-23T07:15:57,448 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-23T07:15:57,450 creating build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,451 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,454 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,457 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,459 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,461 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,463 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,465 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,468 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,470 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,473 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,475 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,478 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-23T07:15:57,481 creating build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,482 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,484 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,486 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,488 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,490 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,493 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,495 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,498 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,500 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,503 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,504 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-23T07:15:57,508 creating build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,509 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,511 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,518 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,521 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,523 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-23T07:15:57,525 creating build/lib/omicverse/external/GNTD 2026-03-23T07:15:57,526 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-23T07:15:57,529 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-23T07:15:57,532 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-23T07:15:57,533 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-23T07:15:57,536 creating build/lib/omicverse/external/BINARY 2026-03-23T07:15:57,537 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-23T07:15:57,540 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-23T07:15:57,542 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-23T07:15:57,545 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-23T07:15:57,547 creating build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,548 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,550 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,552 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,554 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,556 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,558 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,560 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-23T07:15:57,563 creating build/lib/omicverse/external/datacollect 2026-03-23T07:15:57,564 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-23T07:15:57,567 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-23T07:15:57,569 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-23T07:15:57,572 creating build/lib/omicverse/external/spaceflow 2026-03-23T07:15:57,573 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-23T07:15:57,575 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-23T07:15:57,578 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-23T07:15:57,580 creating build/lib/omicverse/external/scSLAT 2026-03-23T07:15:57,581 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-23T07:15:57,583 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-23T07:15:57,586 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-23T07:15:57,588 creating build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,589 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,592 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,594 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,597 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,600 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,602 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,604 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,607 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,609 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-23T07:15:57,612 creating build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,614 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,615 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,618 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,620 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,622 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,624 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,627 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,629 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,632 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,634 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,637 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,640 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,642 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,645 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,647 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-23T07:15:57,650 creating build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,651 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,653 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,655 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,658 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,660 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,662 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-23T07:15:57,665 creating build/lib/omicverse/external/bin2cell 2026-03-23T07:15:57,666 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-23T07:15:57,671 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-23T07:15:57,673 creating build/lib/omicverse/external/PROST 2026-03-23T07:15:57,674 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,677 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,680 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,683 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,685 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,687 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,689 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-23T07:15:57,692 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,693 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,696 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,698 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,700 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,702 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-23T07:15:57,704 creating build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,705 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,708 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,711 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,713 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,716 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,718 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,720 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,722 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-23T07:15:57,725 creating build/lib/omicverse/external/scanorama 2026-03-23T07:15:57,727 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-23T07:15:57,729 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-23T07:15:57,731 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-23T07:15:57,735 creating build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,736 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,738 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,741 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,743 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,745 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-23T07:15:57,748 creating build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,749 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,752 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,754 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,756 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,759 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-23T07:15:57,761 creating build/lib/omicverse/external/mpl_chord 2026-03-23T07:15:57,762 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-23T07:15:57,765 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-23T07:15:57,767 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-23T07:15:57,769 creating build/lib/omicverse/external/commot 2026-03-23T07:15:57,770 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-23T07:15:57,773 creating build/lib/omicverse/external/scrublet 2026-03-23T07:15:57,774 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-23T07:15:57,777 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-23T07:15:57,780 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-23T07:15:57,782 creating build/lib/omicverse/external/STT 2026-03-23T07:15:57,783 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-23T07:15:57,785 creating build/lib/omicverse/external/nocd 2026-03-23T07:15:57,787 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,789 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,791 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,793 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,795 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,797 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-23T07:15:57,800 creating build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,801 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,804 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,806 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,809 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,811 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,813 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,816 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,818 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,820 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,823 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,825 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,827 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,829 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-23T07:15:57,832 creating build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,833 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,836 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,838 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,840 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,843 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,845 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-23T07:15:57,849 creating build/lib/omicverse/external/spaco 2026-03-23T07:15:57,850 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,853 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,855 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,857 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,859 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,861 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,863 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,866 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,868 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-23T07:15:57,871 creating build/lib/omicverse/external/gaston 2026-03-23T07:15:57,872 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,874 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,876 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,878 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,881 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,883 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,885 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,888 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,890 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,893 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,896 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,898 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,900 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,902 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,905 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,907 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-23T07:15:57,909 creating build/lib/omicverse/external/mofapy2 2026-03-23T07:15:57,910 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-23T07:15:57,912 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-23T07:15:57,914 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-23T07:15:57,917 creating build/lib/omicverse/external/cytotrace2 2026-03-23T07:15:57,918 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-23T07:15:57,920 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-23T07:15:57,922 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-23T07:15:57,925 creating build/lib/omicverse/external/scdiffusion 2026-03-23T07:15:57,926 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-23T07:15:57,929 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-23T07:15:57,931 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-23T07:15:57,933 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-23T07:15:57,936 creating build/lib/omicverse/external/flowsig 2026-03-23T07:15:57,937 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-23T07:15:57,940 creating build/lib/omicverse/external/topact 2026-03-23T07:15:57,941 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,943 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,945 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,948 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,950 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,953 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,956 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,958 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-23T07:15:57,961 creating build/lib/omicverse/external/tape 2026-03-23T07:15:57,962 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,964 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,967 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,970 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,972 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,975 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-23T07:15:57,977 creating build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,978 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,981 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,984 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,987 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,989 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,992 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,995 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,997 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:57,999 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-23T07:15:58,002 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-23T07:15:58,003 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-23T07:15:58,005 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-23T07:15:58,008 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-23T07:15:58,010 creating build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,012 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,015 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,018 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,020 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,023 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,026 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,028 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,031 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-23T07:15:58,034 creating build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,035 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,037 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,039 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,041 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,043 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-23T07:15:58,045 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-23T07:15:58,047 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-23T07:15:58,049 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-23T07:15:58,052 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-23T07:15:58,054 creating build/lib/omicverse/external/single/arboreto 2026-03-23T07:15:58,056 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-23T07:15:58,058 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-23T07:15:58,061 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-23T07:15:58,063 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-23T07:15:58,065 creating build/lib/omicverse/external/CAST/model 2026-03-23T07:15:58,066 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-23T07:15:58,068 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-23T07:15:58,071 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-23T07:15:58,073 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,074 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,076 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,079 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,081 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,083 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,085 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,087 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,088 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,091 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,093 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,095 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,097 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:15:58,099 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,100 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,102 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,105 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,108 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,111 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,113 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,116 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,119 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,121 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,123 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:15:58,126 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,128 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,130 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,132 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,134 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,136 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:15:58,139 creating build/lib/omicverse/external/scMulan/utils 2026-03-23T07:15:58,140 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-23T07:15:58,142 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-23T07:15:58,144 creating build/lib/omicverse/external/scMulan/model 2026-03-23T07:15:58,145 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-23T07:15:58,148 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-23T07:15:58,151 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:15:58,152 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:15:58,155 creating build/lib/omicverse/external/datacollect/config 2026-03-23T07:15:58,156 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-23T07:15:58,158 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-23T07:15:58,160 creating build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,161 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,164 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,166 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,169 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,171 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,173 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-23T07:15:58,176 creating build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,178 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,180 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,184 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,186 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,189 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,192 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,194 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,197 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,199 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,202 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,204 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,206 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,208 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,210 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,212 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,215 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,217 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,220 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,222 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,224 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,226 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,229 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-23T07:15:58,233 creating build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,234 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,236 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,239 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,241 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,244 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,246 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,248 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,250 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,253 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,255 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,257 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,260 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,262 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,264 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,266 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,269 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,271 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,273 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,275 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,278 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,280 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,283 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,285 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,288 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,290 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,293 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,295 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,297 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,300 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,302 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,304 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,307 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,310 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,312 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-23T07:15:58,315 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-23T07:15:58,316 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-23T07:15:58,319 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-23T07:15:58,321 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-23T07:15:58,324 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-23T07:15:58,326 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,327 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,330 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,332 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,335 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,337 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,340 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-23T07:15:58,346 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,346 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,349 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,351 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,354 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,356 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,358 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,361 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,362 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-23T07:15:58,366 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,367 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,369 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,372 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,374 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,376 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,378 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,380 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-23T07:15:58,383 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,384 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,387 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,389 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,392 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,394 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,396 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,399 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,401 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,403 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-23T07:15:58,406 creating build/lib/omicverse/external/scSLAT/viz 2026-03-23T07:15:58,407 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-23T07:15:58,410 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-23T07:15:58,413 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-23T07:15:58,415 creating build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,416 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,419 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,421 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,423 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,425 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,427 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,429 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,431 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-23T07:15:58,434 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-23T07:15:58,435 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-23T07:15:58,437 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-23T07:15:58,439 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-23T07:15:58,442 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-23T07:15:58,443 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-23T07:15:58,445 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-23T07:15:58,447 creating build/lib/omicverse/external/space/cell2location 2026-03-23T07:15:58,449 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-23T07:15:58,451 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-23T07:15:58,454 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-23T07:15:58,455 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-23T07:15:58,458 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-23T07:15:58,461 creating build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,461 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,464 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,467 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,471 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,473 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:15:58,476 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-23T07:15:58,477 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-23T07:15:58,479 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-23T07:15:58,481 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-23T07:15:58,484 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,485 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,487 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,489 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,491 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,493 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-23T07:15:58,497 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-23T07:15:58,498 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-23T07:15:58,500 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-23T07:15:58,502 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-23T07:15:58,505 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:15:58,506 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:15:58,508 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:15:58,510 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:15:58,513 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:15:58,515 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,516 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,518 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,521 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,523 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,525 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,527 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,530 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,532 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-23T07:15:58,535 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-23T07:15:58,536 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-23T07:15:58,539 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-23T07:15:58,541 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-23T07:15:58,544 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,545 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,547 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,550 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,553 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,555 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-23T07:15:58,557 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-23T07:15:58,558 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-23T07:15:58,561 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-23T07:15:58,563 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-23T07:15:58,566 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-23T07:15:58,567 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-23T07:15:58,570 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-23T07:15:58,572 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-23T07:15:58,575 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,576 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,579 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,581 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,584 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,587 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-23T07:15:58,589 creating build/lib/omicverse/external/commot/plotting 2026-03-23T07:15:58,590 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-23T07:15:58,593 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-23T07:15:58,596 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-23T07:15:58,599 creating build/lib/omicverse/external/commot/preprocessing 2026-03-23T07:15:58,600 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-23T07:15:58,603 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-23T07:15:58,606 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-23T07:15:58,608 creating build/lib/omicverse/external/commot/tools 2026-03-23T07:15:58,610 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-23T07:15:58,613 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-23T07:15:58,617 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-23T07:15:58,619 creating build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,621 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,624 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,626 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,628 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,630 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-23T07:15:58,635 creating build/lib/omicverse/external/STT/pl 2026-03-23T07:15:58,636 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-23T07:15:58,640 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-23T07:15:58,643 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-23T07:15:58,647 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-23T07:15:58,650 creating build/lib/omicverse/external/STT/tl 2026-03-23T07:15:58,652 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-23T07:15:58,655 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-23T07:15:58,659 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-23T07:15:58,661 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-23T07:15:58,665 creating build/lib/omicverse/external/nocd/metrics 2026-03-23T07:15:58,667 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-23T07:15:58,670 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-23T07:15:58,673 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-23T07:15:58,676 creating build/lib/omicverse/external/nocd/nn 2026-03-23T07:15:58,678 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-23T07:15:58,682 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-23T07:15:58,685 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-23T07:15:58,687 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-23T07:15:58,691 creating build/lib/omicverse/external/spaco/external 2026-03-23T07:15:58,693 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-23T07:15:58,697 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-23T07:15:58,700 creating build/lib/omicverse/external/mofapy2/run 2026-03-23T07:15:58,702 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-23T07:15:58,707 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-23T07:15:58,710 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-23T07:15:58,712 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-23T07:15:58,715 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-23T07:15:58,718 creating build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,720 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,724 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,727 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,731 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,733 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-23T07:15:58,737 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,738 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,742 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,745 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,747 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,750 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,752 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-23T07:15:58,755 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,756 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,759 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,761 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,763 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,766 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,768 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,770 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,773 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,775 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,779 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,781 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,784 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,786 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,788 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,790 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,793 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,795 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,797 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-23T07:15:58,800 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,801 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,803 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,805 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,808 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,810 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,812 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,814 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,816 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,819 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,821 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,823 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-23T07:15:58,826 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,827 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,830 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,832 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,835 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,837 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,840 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,842 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,844 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,847 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,849 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,851 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,854 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,856 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,858 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,860 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,862 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,864 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,865 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:15:58,868 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-23T07:15:58,869 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-23T07:15:58,871 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-23T07:15:58,873 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-23T07:15:58,875 creating build/lib/omicverse/external/flowsig/plotting 2026-03-23T07:15:58,876 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-23T07:15:58,879 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-23T07:15:58,882 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,883 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,885 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,888 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,890 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,892 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,894 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-23T07:15:58,897 creating build/lib/omicverse/external/flowsig/utilities 2026-03-23T07:15:58,898 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-23T07:15:58,901 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-23T07:15:58,904 creating build/lib/omicverse/external/flowsig/tools 2026-03-23T07:15:58,905 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-23T07:15:58,907 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-23T07:15:58,909 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-23T07:15:58,912 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-23T07:15:58,914 creating build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:15:58,916 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:15:58,918 creating build/lib/omicverse/llm/dr 2026-03-23T07:15:58,919 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,922 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,924 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,926 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,928 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,930 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-23T07:15:58,932 creating build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,933 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,937 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,939 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,942 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,945 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,948 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,951 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,955 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,959 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,961 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,964 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,967 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-23T07:15:58,969 creating build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,970 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,972 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,975 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,977 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,980 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,981 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-23T07:15:58,983 creating build/lib/omicverse/llm/utils 2026-03-23T07:15:58,984 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-23T07:15:58,987 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-23T07:15:58,989 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-23T07:15:58,991 creating build/lib/omicverse/llm/scgpt 2026-03-23T07:15:58,992 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:58,994 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:58,997 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:58,999 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:59,001 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:59,003 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-23T07:15:59,006 creating build/lib/omicverse/llm/domain_research 2026-03-23T07:15:59,007 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-23T07:15:59,009 creating build/lib/omicverse/llm/CellPLM 2026-03-23T07:15:59,011 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-23T07:15:59,013 creating build/lib/omicverse/llm/scfoundation 2026-03-23T07:15:59,013 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:15:59,016 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:15:59,018 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:15:59,020 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:15:59,022 creating build/lib/omicverse/llm/dr/retrievers 2026-03-23T07:15:59,023 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-23T07:15:59,026 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-23T07:15:59,029 creating build/lib/omicverse/llm/dr/research 2026-03-23T07:15:59,030 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-23T07:15:59,032 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-23T07:15:59,034 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-23T07:15:59,036 creating build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,037 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,039 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,041 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,043 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,044 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-23T07:15:59,047 creating build/lib/omicverse/llm/dr/verify 2026-03-23T07:15:59,048 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-23T07:15:59,051 creating build/lib/omicverse/llm/dr/write 2026-03-23T07:15:59,052 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-23T07:15:59,055 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-23T07:15:59,057 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-23T07:15:59,059 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,060 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,063 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,065 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,067 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,069 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,072 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,073 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-23T07:15:59,076 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,077 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,080 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,082 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,085 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,087 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-23T07:15:59,090 creating build/lib/omicverse/llm/scgpt/utils 2026-03-23T07:15:59,092 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-23T07:15:59,094 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-23T07:15:59,097 creating build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,099 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,102 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,104 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,107 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,109 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,112 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-23T07:15:59,114 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,115 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,117 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,119 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,121 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,122 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-23T07:15:59,126 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-23T07:15:59,127 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-23T07:15:59,129 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-23T07:15:59,132 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-23T07:15:59,133 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-23T07:15:59,135 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-23T07:15:59,138 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-23T07:15:59,140 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-23T07:15:59,141 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-23T07:15:59,144 creating build/lib/omicverse/llm/domain_research/write 2026-03-23T07:15:59,145 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-23T07:15:59,147 creating build/lib/omicverse/llm/CellPLM/head 2026-03-23T07:15:59,149 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-23T07:15:59,151 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-23T07:15:59,154 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-23T07:15:59,155 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-23T07:15:59,157 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-23T07:15:59,159 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-23T07:15:59,162 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,163 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,166 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,169 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,171 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,173 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,175 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-23T07:15:59,178 creating build/lib/omicverse/llm/CellPLM/model 2026-03-23T07:15:59,179 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-23T07:15:59,181 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-23T07:15:59,183 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,184 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,187 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,189 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,192 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,194 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-23T07:15:59,197 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,198 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,201 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,203 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,205 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,208 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-23T07:15:59,210 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-23T07:15:59,211 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-23T07:15:59,213 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-23T07:15:59,216 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-23T07:15:59,217 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-23T07:15:59,219 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-23T07:15:59,221 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-23T07:15:59,223 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-23T07:15:59,225 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-23T07:15:59,227 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-23T07:15:59,229 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-23T07:15:59,231 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-23T07:15:59,232 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-23T07:15:59,234 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-23T07:15:59,236 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-23T07:15:59,239 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-23T07:15:59,242 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,243 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,245 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,248 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,250 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,252 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,254 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,257 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:15:59,260 creating build/lib/omicverse/io/spatial 2026-03-23T07:15:59,261 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-23T07:15:59,264 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-23T07:15:59,267 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-23T07:15:59,269 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-23T07:15:59,272 creating build/lib/omicverse/io/single 2026-03-23T07:15:59,273 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-23T07:15:59,276 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-23T07:15:59,278 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-23T07:15:59,280 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-23T07:15:59,283 creating build/lib/omicverse/io/bulk 2026-03-23T07:15:59,284 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-23T07:15:59,286 creating build/lib/omicverse/io/general 2026-03-23T07:15:59,287 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-23T07:15:59,290 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-23T07:15:59,292 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-23T07:15:59,295 running egg_info 2026-03-23T07:15:59,307 writing omicverse.egg-info/PKG-INFO 2026-03-23T07:15:59,324 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-23T07:15:59,325 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-23T07:15:59,334 writing requirements to omicverse.egg-info/requires.txt 2026-03-23T07:15:59,336 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-23T07:15:59,530 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-23T07:15:59,590 reading manifest template 'MANIFEST.in' 2026-03-23T07:16:00,536 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-23T07:16:01,874 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-23T07:16:02,311 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-23T07:16:06,470 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-23T07:16:06,920 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-23T07:16:07,376 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-23T07:16:07,836 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-23T07:16:08,304 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-23T07:16:08,777 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-23T07:16:09,252 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-23T07:16:09,255 no previously-included directories found matching '.git' 2026-03-23T07:16:09,258 no previously-included directories found matching '.github' 2026-03-23T07:16:09,261 no previously-included directories found matching '.claude' 2026-03-23T07:16:09,264 no previously-included directories found matching '.pytest_cache' 2026-03-23T07:16:09,267 no previously-included directories found matching '.ruff_cache' 2026-03-23T07:16:09,269 no previously-included directories found matching '.vscode' 2026-03-23T07:16:09,272 no previously-included directories found matching 'docs' 2026-03-23T07:16:09,275 no previously-included directories found matching 'tests' 2026-03-23T07:16:09,278 no previously-included directories found matching 'OvIntelligence' 2026-03-23T07:16:09,281 no previously-included directories found matching 'READMEM' 2026-03-23T07:16:09,284 no previously-included directories found matching 'omicverse_guide' 2026-03-23T07:16:09,287 no previously-included directories found matching 'omicverse_web' 2026-03-23T07:16:09,290 no previously-included directories found matching 'tmp' 2026-03-23T07:16:09,293 no previously-included directories found matching 'tmp_omicverse' 2026-03-23T07:16:09,296 no previously-included directories found matching 'Skill_Seekers' 2026-03-23T07:16:09,302 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-23T07:16:09,310 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-23T07:16:09,315 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-23T07:16:09,316 adding license file 'LICENSE' 2026-03-23T07:16:09,416 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-23T07:16:09,521 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-23T07:16:09,524 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-23T07:16:09,527 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-23T07:16:09,529 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-23T07:16:09,532 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-23T07:16:09,536 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-23T07:16:09,538 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-23T07:16:09,544 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-23T07:16:09,547 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-23T07:16:09,680 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-23T07:16:09,683 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-23T07:16:09,686 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-23T07:16:09,689 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-23T07:16:09,692 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-23T07:16:09,695 creating build/lib/omicverse/single/templates/img 2026-03-23T07:16:09,696 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-23T07:16:09,699 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-23T07:16:09,703 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-23T07:16:09,709 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-23T07:16:09,713 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-23T07:16:09,716 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-23T07:16:09,719 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-23T07:16:09,722 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-23T07:16:09,724 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-23T07:16:09,727 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:09,770 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:09,771 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:09,865 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:09,871 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:09,876 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:10,368 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:10,393 creating build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,395 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,397 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,400 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,403 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,406 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,409 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,411 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,414 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,417 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,420 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,422 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,425 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-23T07:16:10,428 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-23T07:16:10,430 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:10,433 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:10,437 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:10,441 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:10,442 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:10,446 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:10,450 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:10,455 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:10,456 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:10,464 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:10,470 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:10,477 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:10,478 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:10,497 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:10,514 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:10,533 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:16:10,536 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:16:10,538 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:16:10,541 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-23T07:16:10,544 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:16:10,549 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:16:10,552 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:16:10,555 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-23T07:16:10,558 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:10,584 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:10,602 creating build/lib/omicverse/llm/scfoundation/models 2026-03-23T07:16:10,603 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-23T07:16:10,605 creating build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,606 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,609 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,612 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,622 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,643 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-23T07:16:10,761 installing to build/bdist.linux-armv7l/wheel 2026-03-23T07:16:10,762 running install 2026-03-23T07:16:10,785 running install_lib 2026-03-23T07:16:10,790 creating build/bdist.linux-armv7l/wheel 2026-03-23T07:16:10,793 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-23T07:16:10,794 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:10,797 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-23T07:16:10,798 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,801 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,804 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,807 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,809 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,812 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,815 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,817 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,819 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,822 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,825 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,827 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,830 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,832 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,841 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,844 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,847 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,850 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,854 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,858 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,860 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,864 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,867 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,870 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,873 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,879 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,882 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,885 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,888 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,891 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,895 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,898 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,902 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-23T07:16:10,904 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,907 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,910 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,912 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,915 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,918 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-23T07:16:10,919 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-23T07:16:10,923 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-23T07:16:10,925 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-23T07:16:10,928 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-23T07:16:10,932 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-23T07:16:10,935 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,938 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,942 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,944 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,948 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,952 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,955 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,959 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,962 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,965 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,968 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,971 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,975 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-23T07:16:10,983 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-23T07:16:10,984 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:10,988 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:10,992 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:10,996 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-23T07:16:10,997 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-23T07:16:11,000 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,004 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,007 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,011 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,014 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,017 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,020 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,023 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-23T07:16:11,038 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-23T07:16:11,039 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,041 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,044 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,046 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,049 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,051 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,055 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,059 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-23T07:16:11,060 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,063 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,065 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,067 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,069 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,071 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,075 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,078 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,081 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,084 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-23T07:16:11,086 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,088 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,092 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,096 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-23T07:16:11,097 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,100 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,103 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,106 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,109 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,111 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,114 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,116 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,119 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,121 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-23T07:16:11,123 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,126 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,129 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,133 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,135 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,138 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-23T07:16:11,139 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,142 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,144 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,147 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,149 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,151 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,154 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-23T07:16:11,156 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,163 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,165 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,167 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,170 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,172 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,176 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,178 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,181 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,183 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-23T07:16:11,185 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,187 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,190 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,192 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,195 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,197 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,200 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,203 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,205 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,208 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,211 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,213 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,216 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-23T07:16:11,218 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,220 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,223 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,227 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,229 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,232 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,234 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,236 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,240 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,246 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-23T07:16:11,249 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-23T07:16:11,251 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,254 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,257 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,260 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,263 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,265 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,268 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,271 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,273 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,275 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-23T07:16:11,278 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-23T07:16:11,279 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-23T07:16:11,281 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-23T07:16:11,284 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-23T07:16:11,286 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-23T07:16:11,288 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,292 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-23T07:16:11,293 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-23T07:16:11,296 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-23T07:16:11,298 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-23T07:16:11,301 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-23T07:16:11,303 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-23T07:16:11,305 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,307 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,310 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,312 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,316 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,318 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,321 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,323 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,325 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,328 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,330 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,332 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-23T07:16:11,336 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:11,339 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-23T07:16:11,340 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-23T07:16:11,344 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-23T07:16:11,345 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,348 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,350 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,353 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,356 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,359 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,362 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,364 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-23T07:16:11,367 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-23T07:16:11,371 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-23T07:16:11,375 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-23T07:16:11,377 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-23T07:16:11,381 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-23T07:16:11,382 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,385 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,387 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,393 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,395 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,398 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,401 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,404 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,407 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,411 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,414 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,417 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,421 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,424 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,429 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,431 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,434 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,437 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,439 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,443 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-23T07:16:11,445 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:11,449 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-23T07:16:11,450 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,453 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,456 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,459 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,463 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,467 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,471 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,474 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,477 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,480 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,483 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,485 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,488 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,491 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-23T07:16:11,493 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:11,496 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-23T07:16:11,498 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,501 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,504 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,506 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,509 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,512 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,515 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,518 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,521 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,524 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,527 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,530 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,533 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,537 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,539 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,542 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,545 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,549 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,552 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,556 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,560 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-23T07:16:11,561 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-23T07:16:11,565 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-23T07:16:11,570 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-23T07:16:11,574 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,579 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,583 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-23T07:16:11,586 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-23T07:16:11,587 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,589 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,592 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,594 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,596 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,598 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,601 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,604 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,605 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-23T07:16:11,608 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-23T07:16:11,610 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-23T07:16:11,611 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,614 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,616 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,618 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,620 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,623 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,625 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,627 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,630 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,632 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,634 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,636 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-23T07:16:11,639 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-23T07:16:11,640 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-23T07:16:11,642 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-23T07:16:11,644 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-23T07:16:11,646 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-23T07:16:11,649 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-23T07:16:11,651 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,653 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,655 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,658 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,660 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,662 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-23T07:16:11,665 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-23T07:16:11,666 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,669 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,672 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,673 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,676 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,679 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-23T07:16:11,680 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-23T07:16:11,682 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-23T07:16:11,684 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-23T07:16:11,686 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,689 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,691 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,694 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-23T07:16:11,695 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,698 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,702 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,705 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,707 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,710 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,712 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-23T07:16:11,716 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,717 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,720 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-23T07:16:11,721 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-23T07:16:11,724 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-23T07:16:11,726 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-23T07:16:11,727 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,729 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,731 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,733 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,735 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,738 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,740 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-23T07:16:11,743 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,745 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,748 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,751 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-23T07:16:11,755 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-23T07:16:11,757 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-23T07:16:11,758 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-23T07:16:11,761 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-23T07:16:11,764 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-23T07:16:11,767 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-23T07:16:11,768 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,771 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,774 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,779 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,781 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,785 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,788 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,791 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,793 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,796 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,801 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-23T07:16:11,804 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-23T07:16:11,806 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-23T07:16:11,810 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-23T07:16:11,812 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-23T07:16:11,815 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-23T07:16:11,817 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,820 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-23T07:16:11,821 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-23T07:16:11,824 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-23T07:16:11,827 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-23T07:16:11,829 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,832 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,835 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-23T07:16:11,836 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,839 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,841 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,844 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,847 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,850 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,852 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,855 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-23T07:16:11,857 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,858 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,860 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,863 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,865 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,868 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,869 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,872 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,874 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,877 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-23T07:16:11,878 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-23T07:16:11,881 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-23T07:16:11,882 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-23T07:16:11,884 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-23T07:16:11,886 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-23T07:16:11,888 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,891 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-23T07:16:11,892 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-23T07:16:11,895 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-23T07:16:11,897 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-23T07:16:11,899 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,901 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,903 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,905 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,907 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,909 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,911 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,913 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-23T07:16:11,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-23T07:16:11,917 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,919 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,921 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,924 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,927 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,930 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,932 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,935 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,938 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-23T07:16:11,940 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-23T07:16:11,941 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,943 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,946 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,947 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,950 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,952 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,954 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-23T07:16:11,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-23T07:16:11,957 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-23T07:16:11,960 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-23T07:16:11,963 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-23T07:16:11,967 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-23T07:16:11,969 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-23T07:16:11,971 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-23T07:16:11,972 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,975 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,978 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,980 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,983 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,985 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,988 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,991 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,994 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,996 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-23T07:16:11,998 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-23T07:16:12,000 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-23T07:16:12,001 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-23T07:16:12,003 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-23T07:16:12,005 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-23T07:16:12,008 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-23T07:16:12,010 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-23T07:16:12,011 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,014 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,016 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,020 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-23T07:16:12,021 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-23T07:16:12,023 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-23T07:16:12,025 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-23T07:16:12,026 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,029 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,031 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,033 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-23T07:16:12,036 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-23T07:16:12,037 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-23T07:16:12,040 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-23T07:16:12,042 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-23T07:16:12,044 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-23T07:16:12,046 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-23T07:16:12,048 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-23T07:16:12,049 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-23T07:16:12,052 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-23T07:16:12,057 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-23T07:16:12,059 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,061 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,064 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,067 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,070 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,072 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,076 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,078 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,081 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,084 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,087 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,089 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,091 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-23T07:16:12,093 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:12,094 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:12,140 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:12,148 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-23T07:16:12,297 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,298 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,300 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,303 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,307 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,310 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,312 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,315 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,323 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,326 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,328 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,330 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-23T07:16:12,334 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,335 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,337 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,340 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,342 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,344 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-23T07:16:12,347 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-23T07:16:12,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-23T07:16:12,350 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-23T07:16:12,352 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-23T07:16:12,354 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-23T07:16:12,357 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-23T07:16:12,359 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,361 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,365 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,374 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,380 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,382 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,388 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-23T07:16:12,390 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-23T07:16:12,391 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,394 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,396 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,398 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,401 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,403 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,405 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-23T07:16:12,408 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-23T07:16:12,409 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-23T07:16:12,411 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-23T07:16:12,413 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-23T07:16:12,415 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-23T07:16:12,417 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-23T07:16:12,419 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-23T07:16:12,422 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-23T07:16:12,424 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-23T07:16:12,427 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-23T07:16:12,429 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:12,430 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:12,863 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:12,901 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-23T07:16:12,903 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-23T07:16:12,905 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-23T07:16:12,906 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,909 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,912 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,913 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,915 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,917 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,919 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,921 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,923 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,926 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,928 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,930 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-23T07:16:12,934 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-23T07:16:12,935 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,938 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,940 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,942 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,944 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,947 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,949 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,952 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,954 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,957 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,959 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-23T07:16:12,962 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-23T07:16:12,964 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-23T07:16:12,966 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-23T07:16:12,973 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-23T07:16:12,976 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-23T07:16:12,978 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-23T07:16:12,980 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-23T07:16:12,982 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-23T07:16:12,984 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-23T07:16:12,986 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-23T07:16:12,988 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-23T07:16:12,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-23T07:16:12,992 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-23T07:16:12,995 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-23T07:16:12,997 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-23T07:16:12,999 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-23T07:16:13,002 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-23T07:16:13,003 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,005 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,007 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,009 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,011 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,013 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,014 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-23T07:16:13,017 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-23T07:16:13,018 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-23T07:16:13,021 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-23T07:16:13,023 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-23T07:16:13,026 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-23T07:16:13,027 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-23T07:16:13,029 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-23T07:16:13,032 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-23T07:16:13,033 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,035 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,037 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,040 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,042 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,044 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-23T07:16:13,047 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-23T07:16:13,048 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,051 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,054 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,056 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,059 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,061 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,063 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,066 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,069 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,072 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,074 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,076 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-23T07:16:13,079 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-23T07:16:13,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-23T07:16:13,084 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,086 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,088 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,091 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,093 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,095 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,098 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,100 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,103 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,105 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,108 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,110 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,112 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,114 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,117 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,120 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,122 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,125 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,128 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,130 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,132 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,135 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-23T07:16:13,137 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-23T07:16:13,141 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-23T07:16:13,142 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,144 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,147 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,150 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-23T07:16:13,151 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-23T07:16:13,153 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-23T07:16:13,156 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-23T07:16:13,159 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-23T07:16:13,161 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,163 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,165 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,167 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,170 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,170 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,173 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,175 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,177 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,180 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,181 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-23T07:16:13,183 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,186 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,188 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,190 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,192 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,195 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,198 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,199 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,201 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,203 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,206 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,208 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,210 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,213 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,215 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-23T07:16:13,217 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,220 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,222 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,224 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,226 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,229 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,231 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,234 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,237 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,238 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,240 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,243 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,245 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,247 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,250 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,252 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-23T07:16:13,254 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,256 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,259 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,262 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,264 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,267 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,269 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,272 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,274 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,276 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,278 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,281 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,283 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,284 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,287 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,289 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,292 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,294 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,296 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,299 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,301 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,303 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-23T07:16:13,306 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-23T07:16:13,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-23T07:16:13,310 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-23T07:16:13,312 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-23T07:16:13,314 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-23T07:16:13,317 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-23T07:16:13,318 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-23T07:16:13,320 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-23T07:16:13,323 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-23T07:16:13,325 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-23T07:16:13,327 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-23T07:16:13,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-23T07:16:13,331 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,334 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-23T07:16:13,335 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-23T07:16:13,337 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-23T07:16:13,340 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-23T07:16:13,341 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,344 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,346 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,348 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,351 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-23T07:16:13,352 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-23T07:16:13,354 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-23T07:16:13,356 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,358 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,360 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-23T07:16:13,362 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-23T07:16:13,364 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-23T07:16:13,367 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-23T07:16:13,368 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,372 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,375 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,377 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,380 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,382 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,385 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,389 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,391 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-23T07:16:13,394 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-23T07:16:13,395 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,397 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,400 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,402 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,404 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,406 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,409 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,411 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,413 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,416 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,419 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,422 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,425 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,427 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,429 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-23T07:16:13,432 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-23T07:16:13,433 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,436 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,438 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,440 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,442 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,444 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-23T07:16:13,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-23T07:16:13,449 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-23T07:16:13,451 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-23T07:16:13,452 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-23T07:16:13,456 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-23T07:16:13,458 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-23T07:16:13,459 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,461 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,464 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-23T07:16:13,465 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-23T07:16:13,467 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-23T07:16:13,470 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-23T07:16:13,471 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,472 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,474 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,477 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,480 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,482 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-23T07:16:13,484 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-23T07:16:13,485 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-23T07:16:13,488 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-23T07:16:13,490 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-23T07:16:13,492 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,496 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-23T07:16:13,497 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-23T07:16:13,501 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-23T07:16:13,502 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-23T07:16:13,505 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,507 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,510 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-23T07:16:13,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-23T07:16:13,513 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-23T07:16:13,515 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-23T07:16:13,517 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-23T07:16:13,519 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,521 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,523 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,524 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,526 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,528 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-23T07:16:13,531 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-23T07:16:13,532 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-23T07:16:13,534 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-23T07:16:13,536 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-23T07:16:13,539 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:16:13,540 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:16:13,542 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:16:13,544 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:16:13,546 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-23T07:16:13,549 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,550 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,552 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,554 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,556 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,558 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,560 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,563 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,564 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-23T07:16:13,567 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-23T07:16:13,569 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-23T07:16:13,572 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-23T07:16:13,573 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-23T07:16:13,577 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-23T07:16:13,579 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-23T07:16:13,580 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,583 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,586 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,589 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,592 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,594 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,595 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-23T07:16:13,598 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,599 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,602 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,604 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,606 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,607 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-23T07:16:13,610 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-23T07:16:13,611 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,613 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,617 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,619 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,621 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,623 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,624 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,627 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-23T07:16:13,629 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-23T07:16:13,630 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-23T07:16:13,632 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-23T07:16:13,634 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-23T07:16:13,637 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-23T07:16:13,638 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-23T07:16:13,641 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-23T07:16:13,643 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-23T07:16:13,645 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-23T07:16:13,647 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-23T07:16:13,651 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-23T07:16:13,652 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,654 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,656 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,658 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,661 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,663 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-23T07:16:13,665 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-23T07:16:13,667 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-23T07:16:13,669 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-23T07:16:13,671 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-23T07:16:13,674 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-23T07:16:13,676 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,677 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,679 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,681 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,684 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,686 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-23T07:16:13,689 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-23T07:16:13,690 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-23T07:16:13,693 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-23T07:16:13,696 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-23T07:16:13,698 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-23T07:16:13,699 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-23T07:16:13,701 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-23T07:16:13,703 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:13,704 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:13,708 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:13,712 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-23T07:16:13,716 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:13,717 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:13,721 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-23T07:16:13,724 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-23T07:16:13,727 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-23T07:16:13,730 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-23T07:16:13,732 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-23T07:16:13,733 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-23T07:16:13,736 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-23T07:16:13,739 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-23T07:16:13,742 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-23T07:16:13,743 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-23T07:16:13,745 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-23T07:16:13,747 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-23T07:16:13,749 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-23T07:16:13,751 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-23T07:16:13,753 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-23T07:16:13,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-23T07:16:13,756 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-23T07:16:13,759 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-23T07:16:13,762 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-23T07:16:13,764 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-23T07:16:13,766 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-23T07:16:13,767 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-23T07:16:13,770 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-23T07:16:13,772 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-23T07:16:13,774 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-23T07:16:13,777 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-23T07:16:13,778 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-23T07:16:13,780 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-23T07:16:13,784 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-23T07:16:13,786 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-23T07:16:13,788 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-23T07:16:13,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-23T07:16:13,792 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,795 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-23T07:16:13,796 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-23T07:16:13,798 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-23T07:16:13,800 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-23T07:16:13,802 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-23T07:16:13,803 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-23T07:16:13,805 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-23T07:16:13,807 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-23T07:16:13,809 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-23T07:16:13,811 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,814 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,815 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,817 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,819 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-23T07:16:13,822 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-23T07:16:13,823 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,825 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,827 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,830 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,831 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,834 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,836 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,839 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,840 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,843 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,845 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,848 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,850 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-23T07:16:13,852 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-23T07:16:13,853 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,857 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,859 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,861 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,864 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,865 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-23T07:16:13,868 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-23T07:16:13,869 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,872 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,875 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,877 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,879 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,881 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,884 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-23T07:16:13,888 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-23T07:16:13,891 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-23T07:16:13,893 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,895 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-23T07:16:13,897 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-23T07:16:13,899 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,901 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,904 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,906 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,908 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,910 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,912 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,914 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,916 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,919 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,921 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,923 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,925 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,927 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,929 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,931 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-23T07:16:13,934 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-23T07:16:13,935 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-23T07:16:13,937 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-23T07:16:13,939 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:13,940 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:13,948 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:13,955 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:13,956 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:13,973 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:13,990 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-23T07:16:14,013 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-23T07:16:14,021 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-23T07:16:14,025 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-23T07:16:14,027 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-23T07:16:14,028 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-23T07:16:14,031 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-23T07:16:14,033 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-23T07:16:14,035 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-23T07:16:14,037 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,038 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,041 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,043 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,046 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,049 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,052 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,055 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,057 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,060 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,064 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,067 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,069 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,072 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,075 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,077 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,080 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,082 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,086 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-23T07:16:14,088 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-23T07:16:14,091 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-23T07:16:14,093 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-23T07:16:14,097 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,098 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,101 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,103 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,106 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,108 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,111 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,113 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,115 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,119 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,121 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,123 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-23T07:16:14,126 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-23T07:16:14,129 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-23T07:16:14,131 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,133 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,136 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,140 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,142 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,145 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,147 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-23T07:16:14,149 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-23T07:16:14,152 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-23T07:16:14,153 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-23T07:16:14,157 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-23T07:16:14,159 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-23T07:16:14,162 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-23T07:16:14,164 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,166 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,169 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,171 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,175 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,177 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,180 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,182 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,184 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,187 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,190 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,193 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,196 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,199 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,201 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,204 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,206 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,208 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,210 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-23T07:16:14,213 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-23T07:16:14,216 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-23T07:16:14,218 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-23T07:16:14,221 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-23T07:16:14,223 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-23T07:16:14,225 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-23T07:16:14,228 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-23T07:16:14,231 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-23T07:16:14,233 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-23T07:16:14,235 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-23T07:16:14,237 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-23T07:16:14,240 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-23T07:16:14,242 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,244 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,246 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,250 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,252 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,255 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,257 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-23T07:16:14,261 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-23T07:16:14,262 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-23T07:16:14,265 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-23T07:16:14,268 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-23T07:16:14,269 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-23T07:16:14,272 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-23T07:16:14,274 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-23T07:16:14,277 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-23T07:16:14,280 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-23T07:16:14,282 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-23T07:16:14,285 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-23T07:16:14,287 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,289 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,292 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,295 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,297 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,301 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,304 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,306 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-23T07:16:14,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-23T07:16:14,311 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,313 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,316 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,319 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,321 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,324 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-23T07:16:14,326 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-23T07:16:14,328 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,332 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-23T07:16:14,333 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-23T07:16:14,336 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-23T07:16:14,339 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-23T07:16:14,342 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-23T07:16:14,344 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-23T07:16:14,347 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,350 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,353 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,356 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,359 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,362 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,365 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,367 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-23T07:16:14,370 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:14,374 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-23T07:16:14,375 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,381 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-23T07:16:14,382 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,383 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,386 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-23T07:16:14,387 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-23T07:16:14,390 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-23T07:16:14,393 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-23T07:16:14,394 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-23T07:16:14,396 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-23T07:16:14,398 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-23T07:16:14,400 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,403 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-23T07:16:14,404 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-23T07:16:14,406 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-23T07:16:14,407 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-23T07:16:14,409 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-23T07:16:14,411 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-23T07:16:14,414 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-23T07:16:14,415 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-23T07:16:14,418 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-23T07:16:14,419 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-23T07:16:14,422 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-23T07:16:14,424 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-23T07:16:14,426 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,427 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,429 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-23T07:16:14,431 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,434 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-23T07:16:14,436 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,437 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,440 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,442 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,445 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,447 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,450 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,452 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-23T07:16:14,454 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,457 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,459 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,462 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,465 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,468 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,471 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,474 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,477 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,480 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,483 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,485 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-23T07:16:14,488 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-23T07:16:14,489 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,491 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,493 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,497 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,498 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,500 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,503 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,505 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,508 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-23T07:16:14,510 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,513 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,515 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-23T07:16:14,517 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-23T07:16:14,518 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-23T07:16:14,520 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-23T07:16:14,523 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-23T07:16:14,525 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-23T07:16:14,526 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,528 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,531 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-23T07:16:14,532 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-23T07:16:14,534 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-23T07:16:14,537 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,540 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-23T07:16:14,541 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,544 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,546 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,549 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,551 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,554 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-23T07:16:14,557 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,558 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,560 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,562 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,564 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,566 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-23T07:16:14,569 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,572 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:14,573 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:14,595 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:14,598 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:14,614 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-23T07:16:14,616 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,620 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-23T07:16:14,621 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-23T07:16:14,623 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-23T07:16:14,626 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-23T07:16:14,628 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-23T07:16:14,630 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-23T07:16:14,632 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-23T07:16:14,633 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-23T07:16:14,635 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-23T07:16:14,636 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-23T07:16:14,639 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-23T07:16:14,641 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-23T07:16:14,643 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-23T07:16:14,644 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-23T07:16:14,647 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-23T07:16:14,650 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-23T07:16:14,651 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-23T07:16:14,653 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-23T07:16:14,655 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-23T07:16:14,658 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,659 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,661 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,664 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,666 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,669 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,672 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-23T07:16:14,677 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-23T07:16:14,678 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-23T07:16:14,682 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-23T07:16:14,685 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,686 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,690 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,694 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,697 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,700 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-23T07:16:14,703 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,704 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,708 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,711 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,714 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,717 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-23T07:16:14,720 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-23T07:16:14,721 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-23T07:16:14,724 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-23T07:16:14,727 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-23T07:16:14,728 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-23T07:16:14,731 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-23T07:16:14,733 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-23T07:16:14,736 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-23T07:16:14,738 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-23T07:16:14,741 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-23T07:16:14,743 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-23T07:16:14,746 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-23T07:16:14,748 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-23T07:16:14,750 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-23T07:16:14,752 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-23T07:16:14,755 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-23T07:16:14,757 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-23T07:16:14,760 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,764 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,768 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,771 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,773 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,776 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,780 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-23T07:16:14,782 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-23T07:16:14,783 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-23T07:16:14,785 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,787 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,791 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,793 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,795 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,802 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,804 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,807 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,808 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,811 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,813 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,815 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,818 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,820 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,823 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-23T07:16:14,825 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-23T07:16:14,827 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,831 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,833 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,837 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-23T07:16:14,840 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:14,844 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-23T07:16:14,847 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-23T07:16:14,848 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-23T07:16:14,853 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-23T07:16:14,855 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-23T07:16:14,858 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-23T07:16:14,859 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-23T07:16:14,862 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-23T07:16:14,864 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-23T07:16:14,876 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-23T07:16:14,886 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-23T07:16:14,901 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-23T07:16:14,903 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-23T07:16:14,980 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-23T07:16:14,981 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-23T07:16:14,983 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-23T07:16:14,986 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-23T07:16:14,988 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-23T07:16:14,991 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-23T07:16:14,993 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-23T07:16:14,994 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-23T07:16:14,997 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-23T07:16:15,000 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-23T07:16:15,002 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-23T07:16:15,004 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-23T07:16:15,005 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-23T07:16:15,007 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-23T07:16:15,009 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-23T07:16:15,011 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-23T07:16:15,012 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-23T07:16:15,014 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-23T07:16:15,017 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-23T07:16:15,019 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,021 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,023 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,025 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,027 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,029 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,031 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,033 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,035 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,037 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-23T07:16:15,040 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-23T07:16:15,041 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-23T07:16:15,044 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-23T07:16:15,045 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-23T07:16:15,047 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-23T07:16:15,050 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-23T07:16:15,052 running install_egg_info 2026-03-23T07:16:15,058 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.3-py3.11.egg-info 2026-03-23T07:16:15,074 running install_scripts 2026-03-23T07:16:15,089 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.3.dist-info/WHEEL 2026-03-23T07:16:15,092 creating '/tmp/pip-wheel-c7jf8cmr/.tmp-vu9z3_1_/omicverse-2.0.3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-23T07:16:15,096 adding 'omicverse/__init__.py' 2026-03-23T07:16:15,097 adding 'omicverse/_lazy_loader.py' 2026-03-23T07:16:15,100 adding 'omicverse/_monitor.py' 2026-03-23T07:16:15,106 adding 'omicverse/_registry.py' 2026-03-23T07:16:15,111 adding 'omicverse/_settings.py' 2026-03-23T07:16:15,114 adding 'omicverse/claw.py' 2026-03-23T07:16:15,116 adding 'omicverse/cli.py' 2026-03-23T07:16:15,119 adding 'omicverse/agent/__init__.py' 2026-03-23T07:16:15,122 adding 'omicverse/alignment/STAR.py' 2026-03-23T07:16:15,123 adding 'omicverse/alignment/__init__.py' 2026-03-23T07:16:15,126 adding 'omicverse/alignment/_cli_utils.py' 2026-03-23T07:16:15,127 adding 'omicverse/alignment/fastp.py' 2026-03-23T07:16:15,130 adding 'omicverse/alignment/featureCount.py' 2026-03-23T07:16:15,132 adding 'omicverse/alignment/fq_dump.py' 2026-03-23T07:16:15,136 adding 'omicverse/alignment/kb_api.py' 2026-03-23T07:16:15,138 adding 'omicverse/alignment/pipeline.py' 2026-03-23T07:16:15,140 adding 'omicverse/alignment/prefetch.py' 2026-03-23T07:16:15,142 adding 'omicverse/biocontext/__init__.py' 2026-03-23T07:16:15,143 adding 'omicverse/biocontext/_client.py' 2026-03-23T07:16:15,146 adding 'omicverse/biocontext/_tools.py' 2026-03-23T07:16:15,151 adding 'omicverse/bulk/_Deseq2.py' 2026-03-23T07:16:15,155 adding 'omicverse/bulk/_Enrichment.py' 2026-03-23T07:16:15,158 adding 'omicverse/bulk/_Gene_module.py' 2026-03-23T07:16:15,160 adding 'omicverse/bulk/__init__.py' 2026-03-23T07:16:15,202 adding 'omicverse/bulk/_chm13.py' 2026-03-23T07:16:15,207 adding 'omicverse/bulk/_combat.py' 2026-03-23T07:16:15,209 adding 'omicverse/bulk/_decov.py' 2026-03-23T07:16:15,211 adding 'omicverse/bulk/_df_apply.py' 2026-03-23T07:16:15,216 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-23T07:16:15,217 adding 'omicverse/bulk/_network.py' 2026-03-23T07:16:15,220 adding 'omicverse/bulk/_tcga.py' 2026-03-23T07:16:15,221 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-23T07:16:15,223 adding 'omicverse/bulk2single/__init__.py' 2026-03-23T07:16:15,226 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-23T07:16:15,228 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-23T07:16:15,230 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-23T07:16:15,235 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-23T07:16:15,239 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-23T07:16:15,241 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'/tmp/pip-build-tracker-fulh50nj'