2026-03-25T02:53:40,274 Created temporary directory: /tmp/pip-ephem-wheel-cache-27bwlz3_ 2026-03-25T02:53:40,276 Created temporary directory: /tmp/pip-build-tracker-41ei_24_ 2026-03-25T02:53:40,277 Initialized build tracking at /tmp/pip-build-tracker-41ei_24_ 2026-03-25T02:53:40,278 Created build tracker: /tmp/pip-build-tracker-41ei_24_ 2026-03-25T02:53:40,278 Entered build tracker: /tmp/pip-build-tracker-41ei_24_ 2026-03-25T02:53:40,279 Created temporary directory: /tmp/pip-wheel-0f2_tznm 2026-03-25T02:53:40,282 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://pypi.org/simple/omicverse/ 2026-03-25T02:53:40,882 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-25T02:53:40,900 Collecting omicverse==2.0.4 2026-03-25T02:53:40,903 Created temporary directory: /tmp/pip-unpack-tujntk92 2026-03-25T02:53:41,040 Downloading omicverse-2.0.4.tar.gz (11.8 MB) 2026-03-25T02:53:47,196 Added omicverse==2.0.4 from https://files.pythonhosted.org/packages/3b/f9/e0527ab9bf35c3b5e135bd355496becad4cd7a2575dddaab958579b9cb63/omicverse-2.0.4.tar.gz to build tracker '/tmp/pip-build-tracker-41ei_24_' 2026-03-25T02:53:47,204 Created temporary directory: /tmp/pip-build-env-fgxpul7q 2026-03-25T02:53:47,209 Installing build dependencies: started 2026-03-25T02:53:47,210 Running command pip subprocess to install build dependencies 2026-03-25T02:53:48,460 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-25T02:53:49,102 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-25T02:53:49,129 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-25T02:53:50,912 Collecting setuptools>=61 2026-03-25T02:53:50,986 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-25T02:53:51,256 Collecting wheel 2026-03-25T02:53:51,271 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-25T02:53:53,342 Collecting Cython 2026-03-25T02:53:55,027 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-25T02:53:55,496 Collecting packaging>=24.0 2026-03-25T02:53:55,512 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-25T02:53:58,509 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-25T02:54:05,676 Creating /tmp/pip-build-env-fgxpul7q/overlay/local/bin 2026-03-25T02:54:05,679 changing mode of /tmp/pip-build-env-fgxpul7q/overlay/local/bin/cygdb to 755 2026-03-25T02:54:05,681 changing mode of /tmp/pip-build-env-fgxpul7q/overlay/local/bin/cython to 755 2026-03-25T02:54:05,683 changing mode of /tmp/pip-build-env-fgxpul7q/overlay/local/bin/cythonize to 755 2026-03-25T02:54:05,817 changing mode of /tmp/pip-build-env-fgxpul7q/overlay/local/bin/wheel to 755 2026-03-25T02:54:05,844 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-25T02:54:06,236 Installing build dependencies: finished with status 'done' 2026-03-25T02:54:06,243 Getting requirements to build wheel: started 2026-03-25T02:54:06,244 Running command Getting requirements to build wheel 2026-03-25T02:54:07,007 /tmp/pip-build-env-fgxpul7q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-25T02:54:07,007 !! 2026-03-25T02:54:07,008 ******************************************************************************** 2026-03-25T02:54:07,009 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-25T02:54:07,010 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-25T02:54:07,010 or your builds will no longer be supported. 2026-03-25T02:54:07,011 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-25T02:54:07,012 ******************************************************************************** 2026-03-25T02:54:07,013 !! 2026-03-25T02:54:07,013 corresp(dist, value, root_dir) 2026-03-25T02:54:07,297 running egg_info 2026-03-25T02:54:07,303 writing omicverse.egg-info/PKG-INFO 2026-03-25T02:54:07,322 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-25T02:54:07,324 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-25T02:54:07,333 writing requirements to omicverse.egg-info/requires.txt 2026-03-25T02:54:07,334 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-25T02:54:07,591 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:07,652 reading manifest template 'MANIFEST.in' 2026-03-25T02:54:08,617 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-25T02:54:10,090 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-25T02:54:10,686 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-25T02:54:15,604 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-25T02:54:16,204 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-25T02:54:16,787 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-25T02:54:17,382 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-25T02:54:17,855 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-25T02:54:18,404 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-25T02:54:19,010 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-25T02:54:19,015 no previously-included directories found matching '.git' 2026-03-25T02:54:19,019 no previously-included directories found matching '.github' 2026-03-25T02:54:19,024 no previously-included directories found matching '.claude' 2026-03-25T02:54:19,029 no previously-included directories found matching '.pytest_cache' 2026-03-25T02:54:19,032 no previously-included directories found matching '.ruff_cache' 2026-03-25T02:54:19,036 no previously-included directories found matching '.vscode' 2026-03-25T02:54:19,039 no previously-included directories found matching 'docs' 2026-03-25T02:54:19,042 no previously-included directories found matching 'tests' 2026-03-25T02:54:19,046 no previously-included directories found matching 'OvIntelligence' 2026-03-25T02:54:19,049 no previously-included directories found matching 'READMEM' 2026-03-25T02:54:19,053 no previously-included directories found matching 'omicverse_guide' 2026-03-25T02:54:19,056 no previously-included directories found matching 'omicverse_web' 2026-03-25T02:54:19,059 no previously-included directories found matching 'tmp' 2026-03-25T02:54:19,063 no previously-included directories found matching 'tmp_omicverse' 2026-03-25T02:54:19,066 no previously-included directories found matching 'Skill_Seekers' 2026-03-25T02:54:19,072 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-25T02:54:19,080 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-25T02:54:19,086 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-25T02:54:19,087 adding license file 'LICENSE' 2026-03-25T02:54:19,160 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:19,275 Getting requirements to build wheel: finished with status 'done' 2026-03-25T02:54:19,278 Created temporary directory: /tmp/pip-modern-metadata-zj27jgcd 2026-03-25T02:54:19,281 Preparing metadata (pyproject.toml): started 2026-03-25T02:54:19,282 Running command Preparing metadata (pyproject.toml) 2026-03-25T02:54:19,935 /tmp/pip-build-env-fgxpul7q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-25T02:54:19,935 !! 2026-03-25T02:54:19,936 ******************************************************************************** 2026-03-25T02:54:19,937 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-25T02:54:19,938 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-25T02:54:19,938 or your builds will no longer be supported. 2026-03-25T02:54:19,939 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-25T02:54:19,940 ******************************************************************************** 2026-03-25T02:54:19,941 !! 2026-03-25T02:54:19,941 corresp(dist, value, root_dir) 2026-03-25T02:54:20,225 running dist_info 2026-03-25T02:54:20,237 creating /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info 2026-03-25T02:54:20,238 writing /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/PKG-INFO 2026-03-25T02:54:20,255 writing dependency_links to /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/dependency_links.txt 2026-03-25T02:54:20,257 writing entry points to /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/entry_points.txt 2026-03-25T02:54:20,266 writing requirements to /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/requires.txt 2026-03-25T02:54:20,268 writing top-level names to /tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/top_level.txt 2026-03-25T02:54:20,269 writing manifest file '/tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:20,482 reading manifest file '/tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:20,485 reading manifest template 'MANIFEST.in' 2026-03-25T02:54:21,519 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-25T02:54:23,150 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-25T02:54:23,623 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-25T02:54:27,908 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-25T02:54:28,384 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-25T02:54:28,887 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-25T02:54:29,352 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-25T02:54:29,826 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-25T02:54:30,311 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-25T02:54:30,791 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-25T02:54:30,793 no previously-included directories found matching '.git' 2026-03-25T02:54:30,796 no previously-included directories found matching '.github' 2026-03-25T02:54:30,799 no previously-included directories found matching '.claude' 2026-03-25T02:54:30,802 no previously-included directories found matching '.pytest_cache' 2026-03-25T02:54:30,805 no previously-included directories found matching '.ruff_cache' 2026-03-25T02:54:30,807 no previously-included directories found matching '.vscode' 2026-03-25T02:54:30,810 no previously-included directories found matching 'docs' 2026-03-25T02:54:30,812 no previously-included directories found matching 'tests' 2026-03-25T02:54:30,815 no previously-included directories found matching 'OvIntelligence' 2026-03-25T02:54:30,817 no previously-included directories found matching 'READMEM' 2026-03-25T02:54:30,820 no previously-included directories found matching 'omicverse_guide' 2026-03-25T02:54:30,822 no previously-included directories found matching 'omicverse_web' 2026-03-25T02:54:30,825 no previously-included directories found matching 'tmp' 2026-03-25T02:54:30,827 no previously-included directories found matching 'tmp_omicverse' 2026-03-25T02:54:30,830 no previously-included directories found matching 'Skill_Seekers' 2026-03-25T02:54:30,834 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-25T02:54:30,840 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-25T02:54:30,845 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-25T02:54:30,845 adding license file 'LICENSE' 2026-03-25T02:54:30,900 writing manifest file '/tmp/pip-modern-metadata-zj27jgcd/omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:30,902 creating '/tmp/pip-modern-metadata-zj27jgcd/omicverse-2.0.4.dist-info' 2026-03-25T02:54:31,051 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-25T02:54:31,068 Source in /tmp/pip-wheel-0f2_tznm/omicverse_d280f68228094740b90c753ca5f977e4 has version 2.0.4, which satisfies requirement omicverse==2.0.4 from https://files.pythonhosted.org/packages/3b/f9/e0527ab9bf35c3b5e135bd355496becad4cd7a2575dddaab958579b9cb63/omicverse-2.0.4.tar.gz 2026-03-25T02:54:31,069 Removed omicverse==2.0.4 from https://files.pythonhosted.org/packages/3b/f9/e0527ab9bf35c3b5e135bd355496becad4cd7a2575dddaab958579b9cb63/omicverse-2.0.4.tar.gz from build tracker '/tmp/pip-build-tracker-41ei_24_' 2026-03-25T02:54:31,094 Created temporary directory: /tmp/pip-unpack-u9_pn4ib 2026-03-25T02:54:31,095 Building wheels for collected packages: omicverse 2026-03-25T02:54:31,100 Created temporary directory: /tmp/pip-wheel-nx546t_e 2026-03-25T02:54:31,100 Destination directory: /tmp/pip-wheel-nx546t_e 2026-03-25T02:54:31,103 Building wheel for omicverse (pyproject.toml): started 2026-03-25T02:54:31,104 Running command Building wheel for omicverse (pyproject.toml) 2026-03-25T02:54:31,757 /tmp/pip-build-env-fgxpul7q/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-25T02:54:31,757 !! 2026-03-25T02:54:31,758 ******************************************************************************** 2026-03-25T02:54:31,759 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-25T02:54:31,760 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-25T02:54:31,761 or your builds will no longer be supported. 2026-03-25T02:54:31,762 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-25T02:54:31,762 ******************************************************************************** 2026-03-25T02:54:31,763 !! 2026-03-25T02:54:31,763 corresp(dist, value, root_dir) 2026-03-25T02:54:32,023 running bdist_wheel 2026-03-25T02:54:32,043 running build 2026-03-25T02:54:32,044 running build_py 2026-03-25T02:54:32,050 creating build/lib/omicverse 2026-03-25T02:54:32,052 copying omicverse/cli.py -> build/lib/omicverse 2026-03-25T02:54:32,054 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-25T02:54:32,057 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-25T02:54:32,060 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-25T02:54:32,063 copying omicverse/claw.py -> build/lib/omicverse 2026-03-25T02:54:32,065 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-25T02:54:32,069 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-25T02:54:32,073 creating build/lib/omicverse/single 2026-03-25T02:54:32,074 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-25T02:54:32,076 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-25T02:54:32,080 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-25T02:54:32,083 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-25T02:54:32,088 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-25T02:54:32,091 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-25T02:54:32,094 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-25T02:54:32,096 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-25T02:54:32,099 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-25T02:54:32,102 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-25T02:54:32,105 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-25T02:54:32,108 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-25T02:54:32,110 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-25T02:54:32,119 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-25T02:54:32,122 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-25T02:54:32,124 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-25T02:54:32,127 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-25T02:54:32,130 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-25T02:54:32,133 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-25T02:54:32,136 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-25T02:54:32,138 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-25T02:54:32,141 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-25T02:54:32,143 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-25T02:54:32,146 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-25T02:54:32,152 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-25T02:54:32,154 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-25T02:54:32,157 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-25T02:54:32,159 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-25T02:54:32,162 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-25T02:54:32,165 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-25T02:54:32,168 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-25T02:54:32,170 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-25T02:54:32,173 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-25T02:54:32,175 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-25T02:54:32,178 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-25T02:54:32,180 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-25T02:54:32,183 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-25T02:54:32,185 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-25T02:54:32,188 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-25T02:54:32,191 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-25T02:54:32,193 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-25T02:54:32,195 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-25T02:54:32,198 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-25T02:54:32,200 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-25T02:54:32,207 creating build/lib/omicverse/bulk 2026-03-25T02:54:32,208 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,211 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,213 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,215 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,218 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,221 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,224 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,226 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,228 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,230 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,232 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-25T02:54:32,254 creating build/lib/omicverse/utils 2026-03-25T02:54:32,255 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,257 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,261 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,263 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,265 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,268 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,271 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,274 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,276 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,280 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,282 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,286 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,288 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,291 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,294 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,296 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,302 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,305 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,308 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,310 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,313 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,317 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,320 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,323 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,325 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,327 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,330 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,334 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,336 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,339 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,341 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,344 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,346 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,354 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-25T02:54:32,357 creating build/lib/omicverse/bulk2single 2026-03-25T02:54:32,359 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,362 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,365 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,367 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,371 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,374 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,377 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,380 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,382 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,385 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-25T02:54:32,388 creating build/lib/omicverse/biocontext 2026-03-25T02:54:32,389 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-25T02:54:32,393 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-25T02:54:32,395 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-25T02:54:32,399 creating build/lib/omicverse/mcp 2026-03-25T02:54:32,400 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,403 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,405 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,409 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,412 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,417 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,420 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,422 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,425 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,427 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,430 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,433 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,435 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-25T02:54:32,439 creating build/lib/omicverse/fm 2026-03-25T02:54:32,441 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-25T02:54:32,444 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-25T02:54:32,446 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-25T02:54:32,450 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-25T02:54:32,452 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-25T02:54:32,456 creating build/lib/omicverse/pl 2026-03-25T02:54:32,457 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,462 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,464 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,471 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,474 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,477 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,481 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,484 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,487 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,491 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,495 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,497 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,501 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,504 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,510 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,513 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,516 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,519 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,522 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,526 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-25T02:54:32,530 creating build/lib/omicverse/space 2026-03-25T02:54:32,531 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-25T02:54:32,534 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-25T02:54:32,539 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-25T02:54:32,542 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-25T02:54:32,545 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-25T02:54:32,549 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-25T02:54:32,552 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-25T02:54:32,555 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-25T02:54:32,559 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-25T02:54:32,562 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-25T02:54:32,565 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-25T02:54:32,567 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-25T02:54:32,570 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-25T02:54:32,573 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-25T02:54:32,576 creating build/lib/omicverse/pp 2026-03-25T02:54:32,577 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,580 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,583 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,586 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,588 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,591 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,595 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,598 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,601 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,604 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,606 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,609 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,611 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,614 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,617 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,619 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,622 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,624 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,627 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,629 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,631 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,634 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,638 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-25T02:54:32,641 creating build/lib/omicverse/alignment 2026-03-25T02:54:32,642 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,645 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,649 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,651 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,654 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,657 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,661 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,663 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,666 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-25T02:54:32,669 creating build/lib/omicverse/popv 2026-03-25T02:54:32,670 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,673 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,676 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,679 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,682 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,685 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-25T02:54:32,689 creating build/lib/omicverse/jarvis 2026-03-25T02:54:32,691 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,696 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,699 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,703 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,707 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,711 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,714 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,717 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,720 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,723 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-25T02:54:32,727 creating build/lib/omicverse/external 2026-03-25T02:54:32,728 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-25T02:54:32,733 creating build/lib/omicverse/llm 2026-03-25T02:54:32,734 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,741 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,744 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,749 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,753 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,756 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,759 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,762 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,770 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,776 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,779 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,784 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-25T02:54:32,788 creating build/lib/omicverse/data_files 2026-03-25T02:54:32,790 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-25T02:54:32,794 creating build/lib/omicverse/io 2026-03-25T02:54:32,795 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-25T02:54:32,799 creating build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,801 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,804 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,808 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,811 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,814 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,817 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,821 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,823 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,826 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:32,829 creating build/lib/omicverse/agent 2026-03-25T02:54:32,830 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-25T02:54:32,833 creating build/lib/omicverse/datasets 2026-03-25T02:54:32,835 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-25T02:54:32,837 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-25T02:54:32,840 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-25T02:54:32,843 creating build/lib/omicverse/single/templates 2026-03-25T02:54:32,844 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-25T02:54:32,846 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-25T02:54:32,848 creating build/lib/omicverse/bulk/_alignment 2026-03-25T02:54:32,849 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-25T02:54:32,852 creating build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,853 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,856 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,858 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,860 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,862 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,864 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,867 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,870 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,874 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,876 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-25T02:54:32,879 creating build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,880 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,882 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,885 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,887 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,890 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,892 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,894 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,897 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,899 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:32,901 creating build/lib/omicverse/utils/harness 2026-03-25T02:54:32,902 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,905 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,907 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,910 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,912 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,914 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,916 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-25T02:54:32,920 creating build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,921 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,925 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,927 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,929 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,932 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,935 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,938 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,941 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,943 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,946 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,949 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,951 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,954 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-25T02:54:32,956 creating build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,957 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,960 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,962 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,964 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,966 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-25T02:54:32,969 creating build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,969 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,971 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,973 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,975 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,978 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,980 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,982 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,984 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-25T02:54:32,987 creating build/lib/omicverse/pp/experimental 2026-03-25T02:54:32,988 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-25T02:54:32,990 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-25T02:54:32,993 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-25T02:54:32,995 creating build/lib/omicverse/popv/algorithms 2026-03-25T02:54:32,996 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:32,998 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,001 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,003 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,005 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,007 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,009 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,012 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,014 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,016 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,019 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,021 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-25T02:54:33,023 creating build/lib/omicverse/popv/hub 2026-03-25T02:54:33,024 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-25T02:54:33,026 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-25T02:54:33,028 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-25T02:54:33,031 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-25T02:54:33,033 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-25T02:54:33,035 creating build/lib/omicverse/jarvis/gateway 2026-03-25T02:54:33,036 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-25T02:54:33,038 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-25T02:54:33,041 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-25T02:54:33,043 creating build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,044 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,047 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,050 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,053 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,055 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,058 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,060 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-25T02:54:33,064 creating build/lib/omicverse/jarvis/memory 2026-03-25T02:54:33,065 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-25T02:54:33,067 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-25T02:54:33,070 creating build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,071 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,073 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,075 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,077 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,080 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,082 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,084 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-25T02:54:33,087 creating build/lib/omicverse/external/cellanova 2026-03-25T02:54:33,088 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-25T02:54:33,090 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-25T02:54:33,092 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-25T02:54:33,095 creating build/lib/omicverse/external/palantir 2026-03-25T02:54:33,096 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,098 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,100 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,103 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,105 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,108 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,111 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,113 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,115 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,117 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,122 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-25T02:54:33,124 creating build/lib/omicverse/external/harmony 2026-03-25T02:54:33,125 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-25T02:54:33,128 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-25T02:54:33,131 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-25T02:54:33,133 creating build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,134 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,137 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,139 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,141 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,143 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,145 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,147 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,150 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,152 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,154 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,157 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,159 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,162 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,164 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,166 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,167 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,170 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,172 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,174 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,176 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,178 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-25T02:54:33,181 creating build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,182 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,184 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,187 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,189 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,192 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,195 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,197 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,200 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,203 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-25T02:54:33,205 creating build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,206 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,208 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,211 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,212 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,215 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,217 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,219 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-25T02:54:33,222 creating build/lib/omicverse/external/tosica 2026-03-25T02:54:33,223 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-25T02:54:33,226 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-25T02:54:33,229 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-25T02:54:33,232 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-25T02:54:33,234 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-25T02:54:33,237 creating build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,239 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,242 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,245 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,247 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,250 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,253 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,256 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,259 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,261 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,264 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-25T02:54:33,267 creating build/lib/omicverse/external/CAST 2026-03-25T02:54:33,269 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,272 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,275 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,278 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,281 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,284 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,287 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-25T02:54:33,290 creating build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,291 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,294 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,297 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,299 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,301 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-25T02:54:33,304 creating build/lib/omicverse/external/cnmf 2026-03-25T02:54:33,305 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-25T02:54:33,308 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-25T02:54:33,313 creating build/lib/omicverse/external/bulk2single 2026-03-25T02:54:33,315 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-25T02:54:33,317 creating build/lib/omicverse/external/somde 2026-03-25T02:54:33,319 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-25T02:54:33,322 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-25T02:54:33,324 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-25T02:54:33,327 creating build/lib/omicverse/external/VIA 2026-03-25T02:54:33,328 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,332 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,337 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,346 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,354 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,357 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,365 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-25T02:54:33,367 creating build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,369 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,371 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,374 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,377 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,379 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,382 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:33,385 creating build/lib/omicverse/external/scMulan 2026-03-25T02:54:33,386 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-25T02:54:33,389 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-25T02:54:33,392 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-25T02:54:33,395 creating build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,397 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,399 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,402 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,404 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,407 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,409 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,411 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,414 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,417 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,420 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,422 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,424 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-25T02:54:33,428 creating build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,429 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,432 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,434 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,437 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,439 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,442 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,444 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,448 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,451 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,453 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,456 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-25T02:54:33,459 creating build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,460 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,463 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,471 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,473 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,476 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-25T02:54:33,479 creating build/lib/omicverse/external/GNTD 2026-03-25T02:54:33,480 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-25T02:54:33,483 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-25T02:54:33,486 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-25T02:54:33,488 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-25T02:54:33,491 creating build/lib/omicverse/external/BINARY 2026-03-25T02:54:33,492 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-25T02:54:33,496 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-25T02:54:33,499 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-25T02:54:33,502 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-25T02:54:33,504 creating build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,506 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,508 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,511 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,513 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,516 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,518 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,520 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-25T02:54:33,523 creating build/lib/omicverse/external/datacollect 2026-03-25T02:54:33,525 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-25T02:54:33,528 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-25T02:54:33,531 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-25T02:54:33,534 creating build/lib/omicverse/external/spaceflow 2026-03-25T02:54:33,535 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-25T02:54:33,538 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-25T02:54:33,541 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-25T02:54:33,544 creating build/lib/omicverse/external/scSLAT 2026-03-25T02:54:33,545 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-25T02:54:33,548 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-25T02:54:33,552 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-25T02:54:33,555 creating build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,557 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,561 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,565 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,569 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,573 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,576 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,579 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,584 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,587 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-25T02:54:33,591 creating build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,593 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,596 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,600 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,602 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,607 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,609 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,613 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,616 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,619 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,622 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,626 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,630 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,633 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,635 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,638 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-25T02:54:33,641 creating build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,642 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,644 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,646 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,650 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,651 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,653 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-25T02:54:33,656 creating build/lib/omicverse/external/bin2cell 2026-03-25T02:54:33,657 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-25T02:54:33,661 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-25T02:54:33,664 creating build/lib/omicverse/external/PROST 2026-03-25T02:54:33,665 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,667 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,670 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,673 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,676 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,678 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,680 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-25T02:54:33,683 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,684 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,686 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,689 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,691 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,694 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-25T02:54:33,696 creating build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,697 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,700 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,703 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,705 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,707 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,710 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,711 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,714 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-25T02:54:33,717 creating build/lib/omicverse/external/scanorama 2026-03-25T02:54:33,718 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-25T02:54:33,720 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-25T02:54:33,722 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-25T02:54:33,726 creating build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,726 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,729 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,731 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,733 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,736 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-25T02:54:33,739 creating build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,740 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,742 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,744 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,747 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,749 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:33,751 creating build/lib/omicverse/external/mpl_chord 2026-03-25T02:54:33,752 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-25T02:54:33,755 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-25T02:54:33,757 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-25T02:54:33,759 creating build/lib/omicverse/external/commot 2026-03-25T02:54:33,760 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-25T02:54:33,763 creating build/lib/omicverse/external/scrublet 2026-03-25T02:54:33,764 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-25T02:54:33,766 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-25T02:54:33,769 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-25T02:54:33,771 creating build/lib/omicverse/external/STT 2026-03-25T02:54:33,772 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-25T02:54:33,775 creating build/lib/omicverse/external/nocd 2026-03-25T02:54:33,776 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,778 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,780 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,782 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,784 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,786 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-25T02:54:33,789 creating build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,790 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,792 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,794 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,796 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,797 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,801 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,803 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,806 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,808 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,811 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,813 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,815 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,818 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-25T02:54:33,820 creating build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,821 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,824 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,826 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,828 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,831 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,832 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-25T02:54:33,835 creating build/lib/omicverse/external/spaco 2026-03-25T02:54:33,836 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,839 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,841 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,843 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,845 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,847 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,849 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,852 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,854 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-25T02:54:33,856 creating build/lib/omicverse/external/gaston 2026-03-25T02:54:33,857 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,860 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,862 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,864 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,866 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,868 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,870 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,872 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,874 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,876 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,878 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,880 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,882 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,884 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,886 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,888 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-25T02:54:33,891 creating build/lib/omicverse/external/mofapy2 2026-03-25T02:54:33,892 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-25T02:54:33,894 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-25T02:54:33,895 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-25T02:54:33,898 creating build/lib/omicverse/external/cytotrace2 2026-03-25T02:54:33,899 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-25T02:54:33,901 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-25T02:54:33,903 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-25T02:54:33,906 creating build/lib/omicverse/external/scdiffusion 2026-03-25T02:54:33,907 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-25T02:54:33,909 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-25T02:54:33,911 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-25T02:54:33,913 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-25T02:54:33,915 creating build/lib/omicverse/external/flowsig 2026-03-25T02:54:33,917 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-25T02:54:33,919 creating build/lib/omicverse/external/topact 2026-03-25T02:54:33,920 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,922 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,924 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,927 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,929 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,932 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,935 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,937 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-25T02:54:33,939 creating build/lib/omicverse/external/tape 2026-03-25T02:54:33,941 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,943 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,946 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,948 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,951 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,953 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-25T02:54:33,956 creating build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,957 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,960 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,963 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,966 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,968 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,971 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,974 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,976 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,978 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-25T02:54:33,981 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-25T02:54:33,982 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-25T02:54:33,984 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-25T02:54:33,986 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-25T02:54:33,989 creating build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:33,990 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:33,993 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:33,995 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:33,998 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:34,004 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:34,011 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:34,015 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:34,019 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-25T02:54:34,021 creating build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,022 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,024 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,026 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,028 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,030 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-25T02:54:34,033 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-25T02:54:34,034 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-25T02:54:34,036 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-25T02:54:34,039 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-25T02:54:34,041 creating build/lib/omicverse/external/single/arboreto 2026-03-25T02:54:34,043 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-25T02:54:34,045 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-25T02:54:34,048 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-25T02:54:34,050 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-25T02:54:34,052 creating build/lib/omicverse/external/CAST/model 2026-03-25T02:54:34,053 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-25T02:54:34,055 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-25T02:54:34,057 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-25T02:54:34,059 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,060 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,063 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,065 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,067 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,069 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,072 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,074 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,076 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,078 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,081 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,082 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,085 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:34,087 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,088 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,090 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,093 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,096 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,099 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,101 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,104 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,107 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,109 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,111 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:34,114 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,115 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,118 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,120 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,122 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,123 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:34,126 creating build/lib/omicverse/external/scMulan/utils 2026-03-25T02:54:34,135 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-25T02:54:34,138 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-25T02:54:34,140 creating build/lib/omicverse/external/scMulan/model 2026-03-25T02:54:34,141 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-25T02:54:34,143 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-25T02:54:34,146 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:34,148 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:34,151 creating build/lib/omicverse/external/datacollect/config 2026-03-25T02:54:34,153 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-25T02:54:34,155 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-25T02:54:34,157 creating build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,158 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,161 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,164 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,166 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,168 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,171 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-25T02:54:34,174 creating build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,175 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,177 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,180 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,182 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,185 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,187 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,190 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,192 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,195 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,197 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,199 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,202 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,204 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,206 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,209 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,211 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,214 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,216 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,219 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,221 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,223 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,226 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-25T02:54:34,230 creating build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,231 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,233 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,236 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,238 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,240 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,243 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,245 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,247 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,250 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,252 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,255 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,257 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,259 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,262 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,264 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,266 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,269 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,271 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,273 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,276 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,278 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,280 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,283 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,285 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,288 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,290 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,292 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,295 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,298 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,300 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,302 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,304 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,306 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,309 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-25T02:54:34,312 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:34,313 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:34,316 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:34,318 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:34,321 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:34,323 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,324 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,327 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,329 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,332 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,334 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,336 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-25T02:54:34,339 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,340 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,343 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,345 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,348 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,351 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,354 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,357 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,360 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:34,364 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,365 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,369 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,372 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,375 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,379 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,382 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,385 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:34,390 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,392 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,396 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,400 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,404 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,408 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,412 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,416 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,420 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,423 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:34,427 creating build/lib/omicverse/external/scSLAT/viz 2026-03-25T02:54:34,429 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-25T02:54:34,434 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-25T02:54:34,437 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-25T02:54:34,441 creating build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,442 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,446 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,450 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,452 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,455 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,457 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,460 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,462 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-25T02:54:34,465 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:34,466 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:34,469 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:34,471 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:34,474 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:34,475 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:34,478 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:34,481 creating build/lib/omicverse/external/space/cell2location 2026-03-25T02:54:34,483 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-25T02:54:34,485 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-25T02:54:34,489 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:34,490 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:34,493 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:34,496 creating build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,497 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,500 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,503 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,506 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,509 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:34,512 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-25T02:54:34,513 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-25T02:54:34,516 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-25T02:54:34,519 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-25T02:54:34,522 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,523 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,525 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,528 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,530 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,532 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:34,536 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-25T02:54:34,537 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-25T02:54:34,540 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-25T02:54:34,543 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-25T02:54:34,546 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:34,547 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:34,550 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:34,552 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:34,555 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:34,557 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,559 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,561 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,564 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,566 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,568 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,571 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,573 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,576 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-25T02:54:34,579 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:34,580 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:34,584 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:34,586 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:34,588 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,589 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,591 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,594 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,597 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,599 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:34,601 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:34,602 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:34,605 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:34,607 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:34,610 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:34,611 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:34,613 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:34,615 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:34,618 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,619 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,622 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,624 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,627 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,630 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:34,632 creating build/lib/omicverse/external/commot/plotting 2026-03-25T02:54:34,633 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-25T02:54:34,635 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-25T02:54:34,638 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-25T02:54:34,640 creating build/lib/omicverse/external/commot/preprocessing 2026-03-25T02:54:34,641 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-25T02:54:34,644 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-25T02:54:34,646 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-25T02:54:34,648 creating build/lib/omicverse/external/commot/tools 2026-03-25T02:54:34,649 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-25T02:54:34,652 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-25T02:54:34,655 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-25T02:54:34,658 creating build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,659 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,662 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,664 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,666 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,667 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-25T02:54:34,671 creating build/lib/omicverse/external/STT/pl 2026-03-25T02:54:34,672 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-25T02:54:34,675 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-25T02:54:34,678 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-25T02:54:34,680 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-25T02:54:34,683 creating build/lib/omicverse/external/STT/tl 2026-03-25T02:54:34,684 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-25T02:54:34,686 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-25T02:54:34,688 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-25T02:54:34,690 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-25T02:54:34,693 creating build/lib/omicverse/external/nocd/metrics 2026-03-25T02:54:34,694 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-25T02:54:34,696 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-25T02:54:34,698 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-25T02:54:34,701 creating build/lib/omicverse/external/nocd/nn 2026-03-25T02:54:34,702 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-25T02:54:34,704 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-25T02:54:34,706 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-25T02:54:34,708 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-25T02:54:34,711 creating build/lib/omicverse/external/spaco/external 2026-03-25T02:54:34,712 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-25T02:54:34,714 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-25T02:54:34,717 creating build/lib/omicverse/external/mofapy2/run 2026-03-25T02:54:34,718 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-25T02:54:34,722 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-25T02:54:34,724 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-25T02:54:34,725 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-25T02:54:34,727 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-25T02:54:34,729 creating build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,730 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,732 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,735 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,737 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,740 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-25T02:54:34,742 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,743 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,746 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,749 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,751 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,753 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,755 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-25T02:54:34,758 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,759 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,761 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,763 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,766 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,769 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,771 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,773 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,775 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,778 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,781 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,784 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,786 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,789 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,791 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,793 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,795 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,797 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,799 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:34,803 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,804 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,806 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,808 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,810 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,812 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,814 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,816 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,819 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,822 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,824 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,825 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:34,829 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,830 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,832 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,835 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,838 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,840 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,843 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,845 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,847 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,849 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,851 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,854 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,855 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,858 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,860 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,862 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,864 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,865 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,867 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:34,870 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-25T02:54:34,871 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-25T02:54:34,873 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-25T02:54:34,875 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-25T02:54:34,877 creating build/lib/omicverse/external/flowsig/plotting 2026-03-25T02:54:34,879 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-25T02:54:34,882 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-25T02:54:34,884 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,885 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,888 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,891 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,893 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,895 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,897 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:34,900 creating build/lib/omicverse/external/flowsig/utilities 2026-03-25T02:54:34,901 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-25T02:54:34,904 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-25T02:54:34,906 creating build/lib/omicverse/external/flowsig/tools 2026-03-25T02:54:34,908 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-25T02:54:34,910 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-25T02:54:34,912 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-25T02:54:34,915 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-25T02:54:34,917 creating build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:34,918 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:34,921 creating build/lib/omicverse/llm/dr 2026-03-25T02:54:34,922 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,924 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,927 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,929 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,931 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,932 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-25T02:54:34,935 creating build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,936 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,939 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,942 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,945 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,948 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,951 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,954 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,958 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,962 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,966 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,969 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,972 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-25T02:54:34,975 creating build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,977 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,981 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,984 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,986 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,990 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,992 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-25T02:54:34,994 creating build/lib/omicverse/llm/utils 2026-03-25T02:54:34,996 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-25T02:54:34,998 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-25T02:54:35,001 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-25T02:54:35,003 creating build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,004 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,006 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,009 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,011 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,013 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,016 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-25T02:54:35,018 creating build/lib/omicverse/llm/domain_research 2026-03-25T02:54:35,019 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-25T02:54:35,022 creating build/lib/omicverse/llm/CellPLM 2026-03-25T02:54:35,023 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-25T02:54:35,025 creating build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:35,026 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:35,028 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:35,030 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:35,032 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:35,035 creating build/lib/omicverse/llm/dr/retrievers 2026-03-25T02:54:35,036 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-25T02:54:35,038 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-25T02:54:35,041 creating build/lib/omicverse/llm/dr/research 2026-03-25T02:54:35,042 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-25T02:54:35,044 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-25T02:54:35,046 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-25T02:54:35,048 creating build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,049 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,051 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,053 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,055 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,057 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-25T02:54:35,059 creating build/lib/omicverse/llm/dr/verify 2026-03-25T02:54:35,061 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-25T02:54:35,064 creating build/lib/omicverse/llm/dr/write 2026-03-25T02:54:35,065 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-25T02:54:35,067 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-25T02:54:35,070 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-25T02:54:35,072 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,073 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,076 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,079 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,082 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,084 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,086 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,088 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-25T02:54:35,091 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,092 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,095 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,098 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,100 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,102 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-25T02:54:35,105 creating build/lib/omicverse/llm/scgpt/utils 2026-03-25T02:54:35,106 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-25T02:54:35,108 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-25T02:54:35,111 creating build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,112 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,115 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,117 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,120 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,122 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,125 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-25T02:54:35,128 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,129 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,131 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,133 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,135 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,137 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-25T02:54:35,140 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:35,141 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:35,144 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:35,147 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-25T02:54:35,148 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-25T02:54:35,150 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-25T02:54:35,153 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-25T02:54:35,156 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-25T02:54:35,157 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-25T02:54:35,160 creating build/lib/omicverse/llm/domain_research/write 2026-03-25T02:54:35,162 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-25T02:54:35,165 creating build/lib/omicverse/llm/CellPLM/head 2026-03-25T02:54:35,167 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-25T02:54:35,170 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-25T02:54:35,173 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-25T02:54:35,174 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-25T02:54:35,177 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-25T02:54:35,180 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-25T02:54:35,183 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,184 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,187 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,190 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,193 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,195 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,198 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-25T02:54:35,201 creating build/lib/omicverse/llm/CellPLM/model 2026-03-25T02:54:35,202 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-25T02:54:35,205 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-25T02:54:35,208 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,209 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,212 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,216 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,219 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,223 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-25T02:54:35,226 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,227 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,230 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,233 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,235 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,238 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:35,241 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-25T02:54:35,242 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-25T02:54:35,245 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-25T02:54:35,248 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-25T02:54:35,249 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-25T02:54:35,252 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-25T02:54:35,254 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-25T02:54:35,257 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-25T02:54:35,258 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-25T02:54:35,260 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-25T02:54:35,262 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-25T02:54:35,264 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-25T02:54:35,265 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-25T02:54:35,267 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-25T02:54:35,270 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-25T02:54:35,272 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-25T02:54:35,275 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,276 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,278 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,280 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,283 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,285 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,287 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,289 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:35,292 creating build/lib/omicverse/io/spatial 2026-03-25T02:54:35,293 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-25T02:54:35,296 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-25T02:54:35,299 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-25T02:54:35,301 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-25T02:54:35,304 creating build/lib/omicverse/io/single 2026-03-25T02:54:35,305 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-25T02:54:35,308 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-25T02:54:35,310 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-25T02:54:35,312 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-25T02:54:35,314 creating build/lib/omicverse/io/bulk 2026-03-25T02:54:35,315 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-25T02:54:35,317 creating build/lib/omicverse/io/general 2026-03-25T02:54:35,318 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-25T02:54:35,320 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-25T02:54:35,322 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-25T02:54:35,326 running egg_info 2026-03-25T02:54:35,337 writing omicverse.egg-info/PKG-INFO 2026-03-25T02:54:35,354 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-25T02:54:35,355 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-25T02:54:35,364 writing requirements to omicverse.egg-info/requires.txt 2026-03-25T02:54:35,366 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-25T02:54:35,557 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:35,617 reading manifest template 'MANIFEST.in' 2026-03-25T02:54:36,607 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-25T02:54:38,087 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-25T02:54:38,587 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-25T02:54:43,721 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-25T02:54:44,328 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-25T02:54:44,893 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-25T02:54:45,439 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-25T02:54:46,037 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-25T02:54:46,642 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-25T02:54:47,157 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-25T02:54:47,160 no previously-included directories found matching '.git' 2026-03-25T02:54:47,164 no previously-included directories found matching '.github' 2026-03-25T02:54:47,167 no previously-included directories found matching '.claude' 2026-03-25T02:54:47,171 no previously-included directories found matching '.pytest_cache' 2026-03-25T02:54:47,174 no previously-included directories found matching '.ruff_cache' 2026-03-25T02:54:47,177 no previously-included directories found matching '.vscode' 2026-03-25T02:54:47,180 no previously-included directories found matching 'docs' 2026-03-25T02:54:47,183 no previously-included directories found matching 'tests' 2026-03-25T02:54:47,187 no previously-included directories found matching 'OvIntelligence' 2026-03-25T02:54:47,190 no previously-included directories found matching 'READMEM' 2026-03-25T02:54:47,194 no previously-included directories found matching 'omicverse_guide' 2026-03-25T02:54:47,197 no previously-included directories found matching 'omicverse_web' 2026-03-25T02:54:47,200 no previously-included directories found matching 'tmp' 2026-03-25T02:54:47,203 no previously-included directories found matching 'tmp_omicverse' 2026-03-25T02:54:47,207 no previously-included directories found matching 'Skill_Seekers' 2026-03-25T02:54:47,213 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-25T02:54:47,221 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-25T02:54:47,227 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-25T02:54:47,228 adding license file 'LICENSE' 2026-03-25T02:54:47,298 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-25T02:54:47,395 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-25T02:54:47,398 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-25T02:54:47,400 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-25T02:54:47,403 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-25T02:54:47,405 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-25T02:54:47,408 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-25T02:54:47,411 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-25T02:54:47,416 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-25T02:54:47,419 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-25T02:54:47,490 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-25T02:54:47,492 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-25T02:54:47,495 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-25T02:54:47,497 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-25T02:54:47,500 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-25T02:54:47,502 creating build/lib/omicverse/single/templates/img 2026-03-25T02:54:47,503 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-25T02:54:47,506 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-25T02:54:47,509 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-25T02:54:47,513 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-25T02:54:47,516 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-25T02:54:47,519 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-25T02:54:47,521 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-25T02:54:47,524 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-25T02:54:47,526 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-25T02:54:47,528 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:47,535 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:47,536 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:47,629 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:47,634 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:47,640 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:48,077 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:48,102 creating build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,103 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,106 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,109 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,111 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,114 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,117 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,121 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,123 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,126 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,129 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,131 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,134 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-25T02:54:48,137 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-25T02:54:48,140 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:48,142 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:48,146 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:48,150 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:48,151 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:48,155 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:48,159 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:48,164 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:48,165 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:48,172 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:48,180 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:48,189 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:48,190 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:48,209 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:48,228 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:48,291 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:48,294 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:48,298 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:48,302 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-25T02:54:48,305 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:48,319 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:48,325 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:48,328 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-25T02:54:48,330 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:48,379 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:48,397 creating build/lib/omicverse/llm/scfoundation/models 2026-03-25T02:54:48,398 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-25T02:54:48,401 creating build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,402 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,404 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,407 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,418 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,438 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-25T02:54:48,567 installing to build/bdist.linux-armv7l/wheel 2026-03-25T02:54:48,567 running install 2026-03-25T02:54:48,591 running install_lib 2026-03-25T02:54:48,598 creating build/bdist.linux-armv7l/wheel 2026-03-25T02:54:48,601 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-25T02:54:48,602 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:48,605 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-25T02:54:48,607 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,610 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,613 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,616 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,619 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,623 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,626 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,629 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,631 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,634 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,637 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,640 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,643 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,644 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,650 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,653 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,655 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,658 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,661 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,664 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,667 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,669 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,672 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,675 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,678 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,683 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,685 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,688 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,691 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,693 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,696 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,700 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,703 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-25T02:54:48,704 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,706 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,709 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,711 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,714 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,717 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-25T02:54:48,718 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-25T02:54:48,721 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-25T02:54:48,723 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-25T02:54:48,726 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-25T02:54:48,729 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-25T02:54:48,731 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,734 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,737 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,740 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,742 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,745 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,748 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,750 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,753 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,756 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,758 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,761 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,764 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-25T02:54:48,771 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-25T02:54:48,772 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,775 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,778 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,781 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-25T02:54:48,782 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-25T02:54:48,784 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,787 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,790 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,793 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,795 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,797 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,799 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,808 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-25T02:54:48,821 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-25T02:54:48,822 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,825 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,828 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,830 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,832 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,835 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,838 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,841 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-25T02:54:48,842 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,845 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,847 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,849 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,851 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,853 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,857 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,860 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,863 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,865 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-25T02:54:48,867 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,869 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,873 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,876 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-25T02:54:48,877 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,880 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,883 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,885 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,888 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,890 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,893 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,895 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,897 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,900 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-25T02:54:48,902 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,905 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,908 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,911 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,914 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,918 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-25T02:54:48,919 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,921 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,924 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,927 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,929 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,932 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,933 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-25T02:54:48,936 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,944 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,948 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,951 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,955 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,958 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,963 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,966 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,970 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:48,973 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-25T02:54:48,975 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,978 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,981 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,984 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,987 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,991 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,994 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:48,998 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,002 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,005 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,008 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,012 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,015 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-25T02:54:49,018 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,021 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,024 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,029 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,032 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,035 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,038 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,040 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,043 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,048 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-25T02:54:49,051 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-25T02:54:49,052 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,055 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,058 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,060 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,063 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,066 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,068 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,071 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,073 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,075 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-25T02:54:49,078 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-25T02:54:49,079 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-25T02:54:49,082 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-25T02:54:49,084 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-25T02:54:49,087 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-25T02:54:49,088 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,091 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-25T02:54:49,092 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-25T02:54:49,094 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-25T02:54:49,097 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-25T02:54:49,099 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-25T02:54:49,101 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-25T02:54:49,103 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,105 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,108 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,110 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,115 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,117 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,119 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,121 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,123 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,126 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,129 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,130 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-25T02:54:49,134 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:49,137 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-25T02:54:49,138 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-25T02:54:49,141 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-25T02:54:49,142 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,144 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,146 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,148 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,150 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,152 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,154 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,156 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-25T02:54:49,158 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-25T02:54:49,161 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-25T02:54:49,164 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-25T02:54:49,165 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-25T02:54:49,169 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-25T02:54:49,170 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,174 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,176 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,182 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,184 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,188 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,191 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,194 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,197 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,201 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,204 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,207 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,210 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,212 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,218 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,220 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,223 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,226 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,229 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,232 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-25T02:54:49,235 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:49,238 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-25T02:54:49,239 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,242 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,245 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,247 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,250 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,253 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,256 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,259 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,261 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,264 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,267 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,269 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,271 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,273 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-25T02:54:49,275 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:49,278 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-25T02:54:49,279 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,282 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,284 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,287 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,288 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,291 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,295 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,297 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,301 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,304 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,306 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,309 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,311 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,315 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,318 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,320 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,323 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,326 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,329 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,332 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,335 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-25T02:54:49,336 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-25T02:54:49,339 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-25T02:54:49,341 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-25T02:54:49,343 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,346 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,350 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-25T02:54:49,352 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-25T02:54:49,354 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,357 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,359 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,362 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,365 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,367 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,371 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,374 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,376 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-25T02:54:49,380 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-25T02:54:49,382 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-25T02:54:49,383 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,386 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,389 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,392 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,394 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,397 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,400 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,403 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,406 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,409 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,412 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,415 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-25T02:54:49,418 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-25T02:54:49,419 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-25T02:54:49,421 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-25T02:54:49,423 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-25T02:54:49,427 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-25T02:54:49,430 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-25T02:54:49,432 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,434 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,436 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,439 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,441 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,443 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-25T02:54:49,447 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-25T02:54:49,448 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,451 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,454 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,456 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,459 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,463 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-25T02:54:49,466 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-25T02:54:49,468 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-25T02:54:49,473 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-25T02:54:49,475 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,481 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,484 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,487 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-25T02:54:49,489 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,493 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,497 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,500 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,503 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,506 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,508 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-25T02:54:49,511 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,513 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,516 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-25T02:54:49,517 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-25T02:54:49,520 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-25T02:54:49,522 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-25T02:54:49,523 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,525 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,527 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,529 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,531 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,533 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,535 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-25T02:54:49,537 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,540 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,542 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,545 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-25T02:54:49,548 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-25T02:54:49,550 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-25T02:54:49,551 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-25T02:54:49,553 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-25T02:54:49,556 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-25T02:54:49,558 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-25T02:54:49,559 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,562 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,564 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,567 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,570 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,573 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,576 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,578 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,580 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,582 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,586 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-25T02:54:49,588 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-25T02:54:49,589 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-25T02:54:49,593 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-25T02:54:49,596 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-25T02:54:49,599 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-25T02:54:49,600 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-25T02:54:49,604 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-25T02:54:49,607 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-25T02:54:49,609 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-25T02:54:49,611 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,613 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,616 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-25T02:54:49,617 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,621 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,623 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,625 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,629 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,632 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,634 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,638 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-25T02:54:49,640 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,642 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,644 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,646 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,649 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,651 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,653 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,656 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,657 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,660 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-25T02:54:49,662 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-25T02:54:49,664 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-25T02:54:49,666 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-25T02:54:49,668 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-25T02:54:49,670 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-25T02:54:49,672 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,675 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-25T02:54:49,676 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-25T02:54:49,678 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-25T02:54:49,681 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-25T02:54:49,683 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,685 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,687 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,689 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,691 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,694 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,696 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,698 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-25T02:54:49,700 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-25T02:54:49,701 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,704 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,706 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,709 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,712 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,714 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,718 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,721 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,724 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-25T02:54:49,726 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-25T02:54:49,727 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,730 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,733 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,735 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,738 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,740 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,742 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-25T02:54:49,746 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-25T02:54:49,747 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-25T02:54:49,750 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-25T02:54:49,754 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-25T02:54:49,757 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-25T02:54:49,760 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-25T02:54:49,764 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-25T02:54:49,765 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,769 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,773 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,776 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,779 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,783 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,786 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,790 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,794 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,796 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-25T02:54:49,800 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-25T02:54:49,802 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-25T02:54:49,804 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-25T02:54:49,807 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-25T02:54:49,810 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-25T02:54:49,814 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-25T02:54:49,816 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-25T02:54:49,818 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,822 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,825 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,829 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-25T02:54:49,831 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-25T02:54:49,833 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-25T02:54:49,836 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-25T02:54:49,839 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,842 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,845 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,847 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-25T02:54:49,850 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-25T02:54:49,851 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-25T02:54:49,854 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-25T02:54:49,857 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-25T02:54:49,860 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-25T02:54:49,862 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-25T02:54:49,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-25T02:54:49,866 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-25T02:54:49,869 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-25T02:54:49,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-25T02:54:49,876 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,878 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,880 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,883 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,886 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,888 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,891 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,893 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,896 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,899 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,902 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,904 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,907 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-25T02:54:49,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:49,911 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:49,917 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:49,924 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-25T02:54:50,007 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,008 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,011 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,014 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,019 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,022 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,025 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,029 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,035 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,038 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,040 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,042 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-25T02:54:50,046 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,047 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,049 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,051 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,054 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,056 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-25T02:54:50,059 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-25T02:54:50,061 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-25T02:54:50,063 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-25T02:54:50,065 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-25T02:54:50,067 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-25T02:54:50,070 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-25T02:54:50,071 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,074 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,079 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,085 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,091 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,094 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,100 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-25T02:54:50,103 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-25T02:54:50,104 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,106 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,108 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,111 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,114 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,116 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,119 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-25T02:54:50,122 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-25T02:54:50,124 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-25T02:54:50,125 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-25T02:54:50,128 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-25T02:54:50,130 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-25T02:54:50,131 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-25T02:54:50,134 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-25T02:54:50,136 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-25T02:54:50,138 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-25T02:54:50,142 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-25T02:54:50,143 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:50,145 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:51,223 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:51,248 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-25T02:54:51,251 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-25T02:54:51,254 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-25T02:54:51,255 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,258 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,262 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,264 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,266 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,268 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,269 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,272 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,274 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,277 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,279 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,281 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-25T02:54:51,284 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-25T02:54:51,285 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,288 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,290 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,292 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,294 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,296 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,298 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,301 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,303 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,306 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,307 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-25T02:54:51,310 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-25T02:54:51,312 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-25T02:54:51,314 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-25T02:54:51,325 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-25T02:54:51,328 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-25T02:54:51,330 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-25T02:54:51,332 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-25T02:54:51,333 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-25T02:54:51,335 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-25T02:54:51,337 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-25T02:54:51,339 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-25T02:54:51,342 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-25T02:54:51,343 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-25T02:54:51,345 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-25T02:54:51,347 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-25T02:54:51,349 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-25T02:54:51,351 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-25T02:54:51,353 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,354 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,356 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,358 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,360 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,362 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,364 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-25T02:54:51,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-25T02:54:51,367 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-25T02:54:51,370 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-25T02:54:51,373 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-25T02:54:51,376 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-25T02:54:51,377 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-25T02:54:51,379 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-25T02:54:51,382 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-25T02:54:51,383 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,386 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,389 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,392 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,394 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,396 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-25T02:54:51,399 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-25T02:54:51,400 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,402 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,404 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,407 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,409 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,411 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,415 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,417 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,420 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,422 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,424 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,427 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-25T02:54:51,430 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-25T02:54:51,433 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-25T02:54:51,435 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,438 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,440 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,442 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,445 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,448 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,451 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,453 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,456 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,458 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,460 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,463 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,465 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,467 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,470 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,472 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,474 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,477 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,479 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,481 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,484 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,487 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-25T02:54:51,489 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-25T02:54:51,493 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-25T02:54:51,494 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,496 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,499 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,503 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-25T02:54:51,504 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-25T02:54:51,506 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-25T02:54:51,509 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-25T02:54:51,511 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-25T02:54:51,513 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,515 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,518 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,520 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,522 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,523 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,526 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,528 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,531 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,534 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,535 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-25T02:54:51,538 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,540 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,543 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,545 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,548 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,550 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,554 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,555 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,558 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,561 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,563 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,566 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,568 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,570 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,572 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-25T02:54:51,575 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,577 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,579 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,582 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,584 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,586 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,589 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,591 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,594 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,595 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,597 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,599 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,602 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,604 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,606 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,608 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-25T02:54:51,610 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,613 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,615 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,618 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,620 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,623 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,625 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,628 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,630 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,632 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,634 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,636 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,639 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,640 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,643 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,645 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,648 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,650 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,652 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,655 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,657 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,659 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-25T02:54:51,661 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-25T02:54:51,664 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-25T02:54:51,665 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-25T02:54:51,667 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-25T02:54:51,670 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-25T02:54:51,672 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-25T02:54:51,674 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-25T02:54:51,675 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-25T02:54:51,678 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-25T02:54:51,680 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-25T02:54:51,682 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-25T02:54:51,685 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-25T02:54:51,686 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,689 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:51,690 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:51,693 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:51,695 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-25T02:54:51,697 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,699 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,701 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,703 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,706 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:51,707 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:51,709 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-25T02:54:51,711 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,713 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,715 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-25T02:54:51,717 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-25T02:54:51,719 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-25T02:54:51,722 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-25T02:54:51,723 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,726 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,729 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,732 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,734 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,737 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,739 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,742 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,744 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-25T02:54:51,747 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-25T02:54:51,748 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,750 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,752 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,754 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,757 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,759 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,762 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,764 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,766 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,769 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,772 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,774 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,776 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,779 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,781 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-25T02:54:51,783 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-25T02:54:51,785 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,788 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,790 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,793 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,796 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,799 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-25T02:54:51,803 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-25T02:54:51,806 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-25T02:54:51,809 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:51,811 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:51,816 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-25T02:54:51,818 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-25T02:54:51,820 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,822 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,825 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:51,826 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:51,829 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:51,832 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-25T02:54:51,834 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,835 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,837 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,840 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,843 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,845 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-25T02:54:51,848 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:51,849 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:51,852 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:51,854 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-25T02:54:51,856 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,859 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:51,860 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:51,863 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:51,865 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-25T02:54:51,868 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,870 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,873 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-25T02:54:51,876 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-25T02:54:51,877 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-25T02:54:51,879 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-25T02:54:51,881 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-25T02:54:51,884 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,885 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,887 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,889 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,891 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,894 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-25T02:54:51,897 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-25T02:54:51,898 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-25T02:54:51,900 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-25T02:54:51,903 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-25T02:54:51,906 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:51,907 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:51,909 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:51,911 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:51,913 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-25T02:54:51,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,917 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,919 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,921 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,923 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,925 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,928 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,930 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,932 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-25T02:54:51,934 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-25T02:54:51,936 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-25T02:54:51,940 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-25T02:54:51,941 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-25T02:54:51,945 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-25T02:54:51,947 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-25T02:54:51,949 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,952 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,955 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,957 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,960 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,963 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,966 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-25T02:54:51,970 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,971 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,975 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,979 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,981 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,984 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-25T02:54:51,988 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-25T02:54:51,990 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:51,993 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:51,998 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,001 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,004 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,008 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,010 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,013 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-25T02:54:52,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-25T02:54:52,020 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-25T02:54:52,023 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-25T02:54:52,026 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-25T02:54:52,031 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-25T02:54:52,033 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-25T02:54:52,036 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-25T02:54:52,040 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-25T02:54:52,043 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-25T02:54:52,046 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-25T02:54:52,051 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-25T02:54:52,052 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,056 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,059 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,061 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,064 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,067 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-25T02:54:52,070 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-25T02:54:52,071 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-25T02:54:52,075 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-25T02:54:52,077 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-25T02:54:52,081 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-25T02:54:52,083 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,084 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,087 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,090 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,093 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,096 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-25T02:54:52,098 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-25T02:54:52,100 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-25T02:54:52,103 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-25T02:54:52,106 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-25T02:54:52,109 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-25T02:54:52,111 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-25T02:54:52,113 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-25T02:54:52,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:52,117 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:52,123 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:52,127 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-25T02:54:52,132 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:52,134 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:52,138 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-25T02:54:52,142 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-25T02:54:52,145 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-25T02:54:52,148 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-25T02:54:52,150 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-25T02:54:52,152 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-25T02:54:52,156 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-25T02:54:52,159 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-25T02:54:52,162 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-25T02:54:52,163 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-25T02:54:52,167 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-25T02:54:52,169 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-25T02:54:52,171 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-25T02:54:52,173 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-25T02:54:52,176 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-25T02:54:52,179 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-25T02:54:52,181 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-25T02:54:52,184 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-25T02:54:52,187 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-25T02:54:52,190 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-25T02:54:52,192 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-25T02:54:52,193 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-25T02:54:52,197 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-25T02:54:52,200 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-25T02:54:52,202 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-25T02:54:52,205 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-25T02:54:52,207 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-25T02:54:52,209 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-25T02:54:52,212 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-25T02:54:52,214 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-25T02:54:52,217 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-25T02:54:52,220 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-25T02:54:52,221 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,225 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-25T02:54:52,226 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-25T02:54:52,228 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-25T02:54:52,231 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-25T02:54:52,234 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-25T02:54:52,235 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-25T02:54:52,238 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-25T02:54:52,240 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-25T02:54:52,242 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-25T02:54:52,244 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,247 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,249 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,252 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,254 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-25T02:54:52,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-25T02:54:52,259 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,261 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,264 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,266 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,268 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,271 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,274 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,277 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,279 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,282 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,284 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,287 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,290 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-25T02:54:52,293 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-25T02:54:52,294 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,297 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,300 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,302 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,304 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,306 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-25T02:54:52,310 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-25T02:54:52,311 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,314 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,317 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,320 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,322 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,324 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,326 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-25T02:54:52,330 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-25T02:54:52,333 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-25T02:54:52,334 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,336 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-25T02:54:52,339 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-25T02:54:52,340 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,342 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,344 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,346 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,349 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,351 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,353 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,356 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,358 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,361 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,363 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,366 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,368 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,371 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,372 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,375 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-25T02:54:52,377 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-25T02:54:52,378 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-25T02:54:52,381 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-25T02:54:52,383 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:52,384 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:52,394 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:52,404 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:52,405 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:52,430 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:52,454 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-25T02:54:52,471 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-25T02:54:52,478 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-25T02:54:52,482 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-25T02:54:52,485 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-25T02:54:52,486 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-25T02:54:52,489 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-25T02:54:52,491 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-25T02:54:52,494 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-25T02:54:52,495 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,497 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,499 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,501 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,504 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,506 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,508 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,510 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,512 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,515 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,517 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,520 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,523 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,525 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,528 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,530 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,532 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,535 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,537 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-25T02:54:52,539 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-25T02:54:52,541 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-25T02:54:52,543 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-25T02:54:52,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,548 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,550 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,552 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,554 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,556 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,558 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,560 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,562 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,565 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,567 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,569 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-25T02:54:52,571 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-25T02:54:52,573 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-25T02:54:52,575 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,576 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,579 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,582 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,585 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,587 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,589 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-25T02:54:52,591 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-25T02:54:52,593 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-25T02:54:52,594 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-25T02:54:52,597 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-25T02:54:52,599 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-25T02:54:52,601 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-25T02:54:52,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,604 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,606 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,609 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,612 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,614 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,616 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,618 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,620 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,622 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,624 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,627 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,629 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,631 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,633 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,635 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,637 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,639 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,641 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-25T02:54:52,643 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-25T02:54:52,645 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-25T02:54:52,647 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-25T02:54:52,650 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-25T02:54:52,652 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-25T02:54:52,653 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-25T02:54:52,656 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-25T02:54:52,658 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-25T02:54:52,660 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-25T02:54:52,662 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-25T02:54:52,663 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-25T02:54:52,665 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-25T02:54:52,668 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,669 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,672 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,675 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,677 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,680 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,681 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-25T02:54:52,684 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-25T02:54:52,685 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-25T02:54:52,688 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-25T02:54:52,690 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-25T02:54:52,692 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-25T02:54:52,694 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-25T02:54:52,696 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-25T02:54:52,699 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-25T02:54:52,700 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-25T02:54:52,702 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-25T02:54:52,705 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-25T02:54:52,706 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,708 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,710 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,713 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,715 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,719 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,721 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,723 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-25T02:54:52,726 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-25T02:54:52,727 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,729 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,732 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,734 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,736 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,739 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-25T02:54:52,741 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-25T02:54:52,742 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,746 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-25T02:54:52,748 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-25T02:54:52,750 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-25T02:54:52,753 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-25T02:54:52,756 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-25T02:54:52,758 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-25T02:54:52,760 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,763 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,766 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,770 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,774 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,778 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,782 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,785 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-25T02:54:52,788 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:52,794 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-25T02:54:52,795 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:52,803 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-25T02:54:52,805 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,808 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,813 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-25T02:54:52,815 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-25T02:54:52,819 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-25T02:54:52,824 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-25T02:54:52,826 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-25T02:54:52,829 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-25T02:54:52,832 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-25T02:54:52,835 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,839 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-25T02:54:52,841 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-25T02:54:52,845 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-25T02:54:52,848 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-25T02:54:52,851 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-25T02:54:52,854 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-25T02:54:52,858 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-25T02:54:52,860 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-25T02:54:52,865 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-25T02:54:52,867 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-25T02:54:52,870 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-25T02:54:52,873 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-25T02:54:52,875 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,878 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,880 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-25T02:54:52,882 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:52,885 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-25T02:54:52,886 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,888 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,891 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,893 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,895 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,897 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,900 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,901 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-25T02:54:52,904 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,906 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,909 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,912 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,915 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,917 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,920 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,924 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,927 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,929 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,932 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,935 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-25T02:54:52,938 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-25T02:54:52,939 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,941 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,943 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,947 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,948 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,950 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,953 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,956 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,959 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-25T02:54:52,962 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,965 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,967 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-25T02:54:52,969 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-25T02:54:52,971 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-25T02:54:52,973 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-25T02:54:52,976 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-25T02:54:52,978 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-25T02:54:52,979 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:52,981 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:52,985 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-25T02:54:52,986 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-25T02:54:52,988 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-25T02:54:52,991 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:52,994 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-25T02:54:52,995 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:52,998 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:53,000 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:53,002 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:53,005 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:53,007 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-25T02:54:53,010 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,011 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,013 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,015 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,017 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,020 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-25T02:54:53,023 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:53,026 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:53,027 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:53,049 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:53,052 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:53,069 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-25T02:54:53,071 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:53,074 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-25T02:54:53,075 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-25T02:54:53,077 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-25T02:54:53,080 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-25T02:54:53,082 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-25T02:54:53,085 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-25T02:54:53,086 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-25T02:54:53,088 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-25T02:54:53,091 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-25T02:54:53,092 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-25T02:54:53,094 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-25T02:54:53,097 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-25T02:54:53,098 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-25T02:54:53,100 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-25T02:54:53,103 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-25T02:54:53,106 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-25T02:54:53,107 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-25T02:54:53,109 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-25T02:54:53,111 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-25T02:54:53,114 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,115 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,118 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,120 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,122 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,125 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,127 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-25T02:54:53,130 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-25T02:54:53,131 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-25T02:54:53,134 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-25T02:54:53,136 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,137 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,140 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,142 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,145 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,147 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-25T02:54:53,150 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,151 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,154 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,156 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,158 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,161 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-25T02:54:53,163 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-25T02:54:53,164 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-25T02:54:53,167 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-25T02:54:53,170 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-25T02:54:53,171 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-25T02:54:53,174 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-25T02:54:53,176 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-25T02:54:53,178 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-25T02:54:53,179 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-25T02:54:53,182 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-25T02:54:53,184 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-25T02:54:53,186 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-25T02:54:53,188 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-25T02:54:53,189 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-25T02:54:53,192 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-25T02:54:53,194 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-25T02:54:53,196 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-25T02:54:53,199 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,202 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,205 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,208 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,210 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,212 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,218 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-25T02:54:53,219 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-25T02:54:53,220 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-25T02:54:53,223 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,225 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,227 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,229 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,232 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,238 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,240 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,244 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,245 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,248 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,250 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,253 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,255 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,258 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,261 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-25T02:54:53,264 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-25T02:54:53,266 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,272 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,274 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,278 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-25T02:54:53,281 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:53,285 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-25T02:54:53,288 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-25T02:54:53,289 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-25T02:54:53,296 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-25T02:54:53,298 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-25T02:54:53,301 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-25T02:54:53,302 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-25T02:54:53,305 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-25T02:54:53,308 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-25T02:54:53,325 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-25T02:54:53,339 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-25T02:54:53,356 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-25T02:54:53,359 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-25T02:54:53,447 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-25T02:54:53,450 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-25T02:54:53,451 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-25T02:54:53,454 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-25T02:54:53,458 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-25T02:54:53,460 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-25T02:54:53,463 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-25T02:54:53,464 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-25T02:54:53,466 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-25T02:54:53,469 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-25T02:54:53,471 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-25T02:54:53,473 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-25T02:54:53,474 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-25T02:54:53,477 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-25T02:54:53,478 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-25T02:54:53,480 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-25T02:54:53,482 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-25T02:54:53,484 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-25T02:54:53,487 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-25T02:54:53,488 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,490 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,493 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,495 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,496 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,499 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,502 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,504 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,507 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,509 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-25T02:54:53,512 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-25T02:54:53,513 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-25T02:54:53,516 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-25T02:54:53,518 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-25T02:54:53,521 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-25T02:54:53,526 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-25T02:54:53,529 running install_egg_info 2026-03-25T02:54:53,534 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.4-py3.11.egg-info 2026-03-25T02:54:53,550 running install_scripts 2026-03-25T02:54:53,565 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.4.dist-info/WHEEL 2026-03-25T02:54:53,568 creating '/tmp/pip-wheel-nx546t_e/.tmp-qcc6oj3e/omicverse-2.0.4-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-25T02:54:53,572 adding 'omicverse/__init__.py' 2026-03-25T02:54:53,574 adding 'omicverse/_lazy_loader.py' 2026-03-25T02:54:53,577 adding 'omicverse/_monitor.py' 2026-03-25T02:54:53,586 adding 'omicverse/_registry.py' 2026-03-25T02:54:53,594 adding 'omicverse/_settings.py' 2026-03-25T02:54:53,598 adding 'omicverse/claw.py' 2026-03-25T02:54:53,600 adding 'omicverse/cli.py' 2026-03-25T02:54:53,604 adding 'omicverse/agent/__init__.py' 2026-03-25T02:54:53,607 adding 'omicverse/alignment/STAR.py' 2026-03-25T02:54:53,609 adding 'omicverse/alignment/__init__.py' 2026-03-25T02:54:53,612 adding 'omicverse/alignment/_cli_utils.py' 2026-03-25T02:54:53,615 adding 'omicverse/alignment/fastp.py' 2026-03-25T02:54:53,618 adding 'omicverse/alignment/featureCount.py' 2026-03-25T02:54:53,621 adding 'omicverse/alignment/fq_dump.py' 2026-03-25T02:54:53,626 adding 'omicverse/alignment/kb_api.py' 2026-03-25T02:54:53,629 adding 'omicverse/alignment/pipeline.py' 2026-03-25T02:54:53,631 adding 'omicverse/alignment/prefetch.py' 2026-03-25T02:54:53,634 adding 'omicverse/biocontext/__init__.py' 2026-03-25T02:54:53,636 adding 'omicverse/biocontext/_client.py' 2026-03-25T02:54:53,640 adding 'omicverse/biocontext/_tools.py' 2026-03-25T02:54:53,647 adding 'omicverse/bulk/_Deseq2.py' 2026-03-25T02:54:53,652 adding 'omicverse/bulk/_Enrichment.py' 2026-03-25T02:54:53,657 adding 'omicverse/bulk/_Gene_module.py' 2026-03-25T02:54:53,659 adding 'omicverse/bulk/__init__.py' 2026-03-25T02:54:53,707 adding 'omicverse/bulk/_chm13.py' 2026-03-25T02:54:53,713 adding 'omicverse/bulk/_combat.py' 2026-03-25T02:54:53,715 adding 'omicverse/bulk/_decov.py' 2026-03-25T02:54:53,717 adding 'omicverse/bulk/_df_apply.py' 2026-03-25T02:54:53,723 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-25T02:54:53,725 adding 'omicverse/bulk/_network.py' 2026-03-25T02:54:53,727 adding 'omicverse/bulk/_tcga.py' 2026-03-25T02:54:53,729 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-25T02:54:53,731 adding 'omicverse/bulk2single/__init__.py' 2026-03-25T02:54:53,734 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-25T02:54:53,736 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-25T02:54:53,738 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-25T02:54:53,743 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-25T02:54:53,747 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-25T02:54:53,749 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'omicverse-2.0.4.dist-info/licenses/LICENSE' 2026-03-25T02:55:01,701 adding 'omicverse-2.0.4.dist-info/METADATA' 2026-03-25T02:55:01,702 adding 'omicverse-2.0.4.dist-info/WHEEL' 2026-03-25T02:55:01,703 adding 'omicverse-2.0.4.dist-info/entry_points.txt' 2026-03-25T02:55:01,704 adding 'omicverse-2.0.4.dist-info/top_level.txt' 2026-03-25T02:55:01,724 adding 'omicverse-2.0.4.dist-info/RECORD' 2026-03-25T02:55:01,939 removing build/bdist.linux-armv7l/wheel 2026-03-25T02:55:02,700 Building wheel for omicverse (pyproject.toml): finished with status 'done' 2026-03-25T02:55:02,992 Created wheel for omicverse: filename=omicverse-2.0.4-py3-none-any.whl size=12531495 sha256=657fd2ad468f937dae31b60fc0aad569496226c29286de1ba8041c8513b59318 2026-03-25T02:55:02,994 Stored in directory: /tmp/pip-ephem-wheel-cache-g895i8rt/wheels/93/ff/87/0ffceb7626c88356828aec48745289cb965cce15cacb89665b 2026-03-25T02:55:03,072 Successfully built omicverse 2026-03-25T02:55:03,577 Removed build tracker: '/tmp/pip-build-tracker-41ei_24_'