2026-03-27T01:04:17,939 Created temporary directory: /tmp/pip-ephem-wheel-cache-cg4idmef 2026-03-27T01:04:17,941 Created temporary directory: /tmp/pip-build-tracker-r1guxdwd 2026-03-27T01:04:17,941 Initialized build tracking at /tmp/pip-build-tracker-r1guxdwd 2026-03-27T01:04:17,942 Created build tracker: /tmp/pip-build-tracker-r1guxdwd 2026-03-27T01:04:17,942 Entered build tracker: /tmp/pip-build-tracker-r1guxdwd 2026-03-27T01:04:17,943 Created temporary directory: /tmp/pip-wheel-ue629zsw 2026-03-27T01:04:17,946 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,571 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,571 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,572 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,573 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,573 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,574 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,574 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,575 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,576 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,576 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,577 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,577 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,578 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,578 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:04:18,579 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T01:04:18,580 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T01:04:18,606 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T01:04:18,623 Collecting omicverse==2.0.5 2026-03-27T01:04:18,626 Created temporary directory: /tmp/pip-unpack-zqhvghnf 2026-03-27T01:04:18,779 Downloading omicverse-2.0.5.tar.gz (11.8 MB) 2026-03-27T01:04:24,651 Added omicverse==2.0.5 from https://files.pythonhosted.org/packages/1d/8f/578ed1d2b21fb78a6dbcd7a91601bbcbcb5833413c8a014a9ce3250e7e11/omicverse-2.0.5.tar.gz to build tracker '/tmp/pip-build-tracker-r1guxdwd' 2026-03-27T01:04:24,659 Created temporary directory: /tmp/pip-build-env-vkbh9njb 2026-03-27T01:04:24,664 Installing build dependencies: started 2026-03-27T01:04:24,665 Running command pip subprocess to install build dependencies 2026-03-27T01:04:25,835 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T01:04:26,266 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T01:04:26,289 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T01:04:28,042 Collecting setuptools>=61 2026-03-27T01:04:28,124 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T01:04:28,397 Collecting wheel 2026-03-27T01:04:28,414 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T01:04:30,439 Collecting Cython 2026-03-27T01:04:31,219 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T01:04:31,681 Collecting packaging>=24.0 2026-03-27T01:04:31,697 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T01:04:34,687 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T01:04:41,797 Creating /tmp/pip-build-env-vkbh9njb/overlay/local/bin 2026-03-27T01:04:41,800 changing mode of /tmp/pip-build-env-vkbh9njb/overlay/local/bin/cygdb to 755 2026-03-27T01:04:41,802 changing mode of /tmp/pip-build-env-vkbh9njb/overlay/local/bin/cython to 755 2026-03-27T01:04:41,804 changing mode of /tmp/pip-build-env-vkbh9njb/overlay/local/bin/cythonize to 755 2026-03-27T01:04:41,938 changing mode of /tmp/pip-build-env-vkbh9njb/overlay/local/bin/wheel to 755 2026-03-27T01:04:41,967 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T01:04:42,342 Installing build dependencies: finished with status 'done' 2026-03-27T01:04:42,349 Getting requirements to build wheel: started 2026-03-27T01:04:42,350 Running command Getting requirements to build wheel 2026-03-27T01:04:43,095 /tmp/pip-build-env-vkbh9njb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:04:43,095 !! 2026-03-27T01:04:43,096 ******************************************************************************** 2026-03-27T01:04:43,097 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:04:43,098 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:04:43,099 or your builds will no longer be supported. 2026-03-27T01:04:43,100 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:04:43,101 ******************************************************************************** 2026-03-27T01:04:43,102 !! 2026-03-27T01:04:43,103 corresp(dist, value, root_dir) 2026-03-27T01:04:43,383 running egg_info 2026-03-27T01:04:43,390 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:04:43,408 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:04:43,410 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:04:43,419 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:04:43,421 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:04:43,665 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:04:44,094 reading manifest template 'MANIFEST.in' 2026-03-27T01:04:44,994 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:04:46,306 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:04:46,721 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:04:51,077 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:04:51,987 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:04:52,400 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:04:52,835 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:04:53,248 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:04:53,681 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:04:54,102 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:04:54,106 no previously-included directories found matching '.git' 2026-03-27T01:04:54,109 no previously-included directories found matching '.github' 2026-03-27T01:04:54,113 no previously-included directories found matching '.claude' 2026-03-27T01:04:54,117 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:04:54,120 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:04:54,124 no previously-included directories found matching '.vscode' 2026-03-27T01:04:54,127 no previously-included directories found matching 'docs' 2026-03-27T01:04:54,130 no previously-included directories found matching 'tests' 2026-03-27T01:04:54,134 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:04:54,137 no previously-included directories found matching 'READMEM' 2026-03-27T01:04:54,141 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:04:54,144 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:04:54,148 no previously-included directories found matching 'tmp' 2026-03-27T01:04:54,151 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:04:54,154 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:04:54,161 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:04:54,169 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:04:54,176 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:04:54,177 adding license file 'LICENSE' 2026-03-27T01:04:54,255 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:04:54,384 Getting requirements to build wheel: finished with status 'done' 2026-03-27T01:04:54,388 Created temporary directory: /tmp/pip-modern-metadata-l3bxua5g 2026-03-27T01:04:54,390 Preparing metadata (pyproject.toml): started 2026-03-27T01:04:54,392 Running command Preparing metadata (pyproject.toml) 2026-03-27T01:04:55,041 /tmp/pip-build-env-vkbh9njb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:04:55,041 !! 2026-03-27T01:04:55,043 ******************************************************************************** 2026-03-27T01:04:55,043 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:04:55,045 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:04:55,045 or your builds will no longer be supported. 2026-03-27T01:04:55,046 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:04:55,047 ******************************************************************************** 2026-03-27T01:04:55,048 !! 2026-03-27T01:04:55,049 corresp(dist, value, root_dir) 2026-03-27T01:04:55,340 running dist_info 2026-03-27T01:04:55,352 creating /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info 2026-03-27T01:04:55,353 writing /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/PKG-INFO 2026-03-27T01:04:55,371 writing dependency_links to /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/dependency_links.txt 2026-03-27T01:04:55,373 writing entry points to /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/entry_points.txt 2026-03-27T01:04:55,383 writing requirements to /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/requires.txt 2026-03-27T01:04:55,384 writing top-level names to /tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/top_level.txt 2026-03-27T01:04:55,386 writing manifest file '/tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:04:55,593 reading manifest file '/tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:04:55,595 reading manifest template 'MANIFEST.in' 2026-03-27T01:04:56,545 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:04:57,870 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:04:58,303 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:05:05,374 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:05:05,878 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:05:06,441 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:05:06,883 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:05:07,324 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:05:07,772 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:05:08,196 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:05:08,198 no previously-included directories found matching '.git' 2026-03-27T01:05:08,201 no previously-included directories found matching '.github' 2026-03-27T01:05:08,203 no previously-included directories found matching '.claude' 2026-03-27T01:05:08,205 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:05:08,207 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:05:08,210 no previously-included directories found matching '.vscode' 2026-03-27T01:05:08,212 no previously-included directories found matching 'docs' 2026-03-27T01:05:08,214 no previously-included directories found matching 'tests' 2026-03-27T01:05:08,216 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:05:08,218 no previously-included directories found matching 'READMEM' 2026-03-27T01:05:08,221 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:05:08,223 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:05:08,226 no previously-included directories found matching 'tmp' 2026-03-27T01:05:08,228 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:05:08,230 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:05:08,234 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:05:08,240 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:05:08,244 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:05:08,245 adding license file 'LICENSE' 2026-03-27T01:05:08,301 writing manifest file '/tmp/pip-modern-metadata-l3bxua5g/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:05:08,305 creating '/tmp/pip-modern-metadata-l3bxua5g/omicverse-2.0.5.dist-info' 2026-03-27T01:05:08,470 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T01:05:08,489 Source in /tmp/pip-wheel-ue629zsw/omicverse_d072dc9af4104e6d888698199b27a461 has version 2.0.5, which satisfies requirement omicverse==2.0.5 from https://files.pythonhosted.org/packages/1d/8f/578ed1d2b21fb78a6dbcd7a91601bbcbcb5833413c8a014a9ce3250e7e11/omicverse-2.0.5.tar.gz 2026-03-27T01:05:08,490 Removed omicverse==2.0.5 from https://files.pythonhosted.org/packages/1d/8f/578ed1d2b21fb78a6dbcd7a91601bbcbcb5833413c8a014a9ce3250e7e11/omicverse-2.0.5.tar.gz from build tracker '/tmp/pip-build-tracker-r1guxdwd' 2026-03-27T01:05:08,514 Created temporary directory: /tmp/pip-unpack-0qolw_e1 2026-03-27T01:05:08,515 Building wheels for collected packages: omicverse 2026-03-27T01:05:08,520 Created temporary directory: /tmp/pip-wheel-qyf30nsq 2026-03-27T01:05:08,521 Destination directory: /tmp/pip-wheel-qyf30nsq 2026-03-27T01:05:08,523 Building wheel for omicverse (pyproject.toml): started 2026-03-27T01:05:08,524 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T01:05:09,151 /tmp/pip-build-env-vkbh9njb/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:05:09,152 !! 2026-03-27T01:05:09,153 ******************************************************************************** 2026-03-27T01:05:09,153 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:05:09,154 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:05:09,154 or your builds will no longer be supported. 2026-03-27T01:05:09,155 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:05:09,156 ******************************************************************************** 2026-03-27T01:05:09,157 !! 2026-03-27T01:05:09,157 corresp(dist, value, root_dir) 2026-03-27T01:05:09,422 running bdist_wheel 2026-03-27T01:05:09,441 running build 2026-03-27T01:05:09,442 running build_py 2026-03-27T01:05:09,448 creating build/lib/omicverse 2026-03-27T01:05:09,450 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T01:05:09,452 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T01:05:09,455 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T01:05:09,458 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T01:05:09,460 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T01:05:09,463 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T01:05:09,466 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T01:05:09,468 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,469 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,472 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,473 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,475 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,477 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,479 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,481 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,483 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,485 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:09,489 creating build/lib/omicverse/pp 2026-03-27T01:05:09,490 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,493 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,495 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,498 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,500 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,503 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,506 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,508 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,511 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,513 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,515 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,518 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,520 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,523 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,527 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,530 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,532 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,534 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,537 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,539 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,541 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,544 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,546 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T01:05:09,549 creating build/lib/omicverse/bulk2single 2026-03-27T01:05:09,550 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,552 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,555 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,557 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,560 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,562 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,565 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,568 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,571 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,574 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T01:05:09,577 creating build/lib/omicverse/agent 2026-03-27T01:05:09,579 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T01:05:09,583 creating build/lib/omicverse/utils 2026-03-27T01:05:09,584 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,586 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,590 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,593 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,597 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,601 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,604 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,607 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,610 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,612 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,615 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,617 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,620 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,625 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,628 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,631 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,633 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,636 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,639 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,642 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,644 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,647 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,649 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,652 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,654 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,657 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,660 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,663 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,666 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,668 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,671 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,674 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,677 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,679 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T01:05:09,682 creating build/lib/omicverse/bulk 2026-03-27T01:05:09,684 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,687 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,689 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,691 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,694 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,696 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,698 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,701 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,704 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,707 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,710 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T01:05:09,722 creating build/lib/omicverse/fm 2026-03-27T01:05:09,723 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T01:05:09,726 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T01:05:09,728 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T01:05:09,731 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T01:05:09,734 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T01:05:09,738 creating build/lib/omicverse/alignment 2026-03-27T01:05:09,740 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,742 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,745 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,747 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,750 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,753 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,755 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,758 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,761 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T01:05:09,765 creating build/lib/omicverse/single 2026-03-27T01:05:09,766 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T01:05:09,769 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T01:05:09,772 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T01:05:09,775 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T01:05:09,779 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T01:05:09,784 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T01:05:09,788 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T01:05:09,790 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T01:05:09,794 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T01:05:09,798 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T01:05:09,800 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T01:05:09,803 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T01:05:09,806 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T01:05:09,809 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T01:05:09,813 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T01:05:09,816 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T01:05:09,818 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T01:05:09,821 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T01:05:09,824 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T01:05:09,826 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T01:05:09,829 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T01:05:09,832 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T01:05:09,835 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T01:05:09,838 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T01:05:09,841 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T01:05:09,844 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T01:05:09,847 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T01:05:09,849 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T01:05:09,854 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T01:05:09,857 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T01:05:09,860 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T01:05:09,863 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T01:05:09,866 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T01:05:09,868 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T01:05:09,871 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T01:05:09,873 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T01:05:09,876 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T01:05:09,879 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T01:05:09,881 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T01:05:09,884 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T01:05:09,886 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T01:05:09,889 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T01:05:09,891 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T01:05:09,894 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T01:05:09,902 creating build/lib/omicverse/llm 2026-03-27T01:05:09,903 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,906 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,912 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,919 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,922 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,924 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,927 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,929 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,933 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,938 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,943 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,946 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T01:05:09,949 creating build/lib/omicverse/biocontext 2026-03-27T01:05:09,950 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T01:05:09,953 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T01:05:09,956 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T01:05:09,958 creating build/lib/omicverse/datasets 2026-03-27T01:05:09,959 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T01:05:09,962 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T01:05:09,964 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T01:05:09,967 creating build/lib/omicverse/data_files 2026-03-27T01:05:09,967 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T01:05:09,971 creating build/lib/omicverse/mcp 2026-03-27T01:05:09,972 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,974 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,976 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,979 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,980 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,982 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,984 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,986 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,990 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,993 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,995 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T01:05:09,997 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T01:05:10,000 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T01:05:10,003 creating build/lib/omicverse/external 2026-03-27T01:05:10,004 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T01:05:10,007 creating build/lib/omicverse/pl 2026-03-27T01:05:10,008 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,011 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,015 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,018 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,020 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,023 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,026 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,028 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,030 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,035 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,038 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,041 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,043 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,046 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,051 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,053 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,056 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,059 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,062 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,064 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T01:05:10,067 creating build/lib/omicverse/io 2026-03-27T01:05:10,068 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T01:05:10,071 creating build/lib/omicverse/space 2026-03-27T01:05:10,071 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T01:05:10,075 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T01:05:10,077 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T01:05:10,079 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T01:05:10,082 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T01:05:10,084 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T01:05:10,086 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T01:05:10,088 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T01:05:10,090 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T01:05:10,093 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T01:05:10,095 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T01:05:10,098 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T01:05:10,100 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T01:05:10,103 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T01:05:10,106 creating build/lib/omicverse/jarvis 2026-03-27T01:05:10,107 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,109 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,112 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,115 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,117 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,120 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,121 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,124 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,126 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,128 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,131 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T01:05:10,133 creating build/lib/omicverse/popv 2026-03-27T01:05:10,134 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,136 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,138 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,141 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,143 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,146 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T01:05:10,148 creating build/lib/omicverse/pp/experimental 2026-03-27T01:05:10,149 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:05:10,152 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:05:10,154 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:05:10,156 creating build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,157 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,160 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,162 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,164 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,167 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,169 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,172 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,174 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,176 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,179 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,181 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,184 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,186 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:05:10,189 creating build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,190 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,193 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,195 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,196 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,199 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,201 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,204 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,206 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,209 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:10,211 creating build/lib/omicverse/utils/harness 2026-03-27T01:05:10,212 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,215 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,217 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,220 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,222 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,225 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,227 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T01:05:10,230 creating build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,231 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,233 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,235 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,238 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,241 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,243 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,245 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,247 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,249 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,251 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,253 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,256 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,260 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,262 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,264 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:05:10,267 creating build/lib/omicverse/bulk/_alignment 2026-03-27T01:05:10,268 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T01:05:10,270 creating build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,271 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,273 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,275 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,278 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,280 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,282 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,284 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,286 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:05:10,288 creating build/lib/omicverse/single/templates 2026-03-27T01:05:10,289 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T01:05:10,291 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T01:05:10,294 creating build/lib/omicverse/llm/utils 2026-03-27T01:05:10,295 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T01:05:10,297 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T01:05:10,300 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T01:05:10,302 creating build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:10,303 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:10,306 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:10,309 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:10,310 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:10,313 creating build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,314 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,316 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,318 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,320 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,323 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,325 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:05:10,327 creating build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,328 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,330 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,332 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,334 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,336 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,338 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:05:10,341 creating build/lib/omicverse/llm/dr 2026-03-27T01:05:10,342 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,344 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,346 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,348 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,350 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,351 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T01:05:10,354 creating build/lib/omicverse/llm/CellPLM 2026-03-27T01:05:10,354 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T01:05:10,356 creating build/lib/omicverse/llm/domain_research 2026-03-27T01:05:10,357 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T01:05:10,360 creating build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,361 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,363 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,366 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,369 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,372 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,374 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,377 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,380 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,383 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,387 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,389 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,392 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:05:10,396 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,397 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,399 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,401 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,403 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,405 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,408 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,410 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:10,412 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,413 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,415 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,417 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,419 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,421 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:05:10,424 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:05:10,425 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:05:10,427 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:05:10,429 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,430 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,433 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,435 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,438 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,440 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,442 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:05:10,445 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:10,446 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:10,449 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:10,451 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:05:10,452 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:05:10,455 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:05:10,457 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:05:10,460 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,461 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,463 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,466 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,468 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,470 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:05:10,473 creating build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,474 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,476 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,478 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,480 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,482 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:05:10,485 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:05:10,486 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:05:10,489 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:05:10,491 creating build/lib/omicverse/llm/dr/write 2026-03-27T01:05:10,492 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:05:10,495 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:05:10,496 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:05:10,499 creating build/lib/omicverse/llm/dr/research 2026-03-27T01:05:10,500 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:05:10,502 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:05:10,504 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:05:10,506 creating build/lib/omicverse/llm/dr/verify 2026-03-27T01:05:10,507 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T01:05:10,510 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:05:10,511 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:05:10,513 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:05:10,515 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:05:10,517 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,518 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,521 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,523 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,525 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,527 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,530 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:05:10,533 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,534 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,536 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,538 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,541 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,543 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:05:10,546 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:05:10,547 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:05:10,549 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:05:10,552 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:05:10,553 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:05:10,555 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:05:10,558 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:05:10,559 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:05:10,561 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:05:10,563 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:05:10,566 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:05:10,568 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:05:10,569 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:05:10,571 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:05:10,573 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:05:10,574 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:05:10,576 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:05:10,578 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:05:10,581 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:05:10,582 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:05:10,584 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:05:10,587 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:05:10,590 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,591 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,594 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,597 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,599 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,602 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:10,605 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:05:10,606 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:05:10,609 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T01:05:10,611 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T01:05:10,614 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,615 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,619 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,623 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,627 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,630 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,632 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,635 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:05:10,638 creating build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,640 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,643 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,647 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,649 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,653 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:05:10,657 creating build/lib/omicverse/external/nocd 2026-03-27T01:05:10,660 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,664 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,666 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,668 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,670 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,673 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T01:05:10,675 creating build/lib/omicverse/external/cytotrace2 2026-03-27T01:05:10,677 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:05:10,679 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:05:10,682 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:05:10,684 creating build/lib/omicverse/external/scSLAT 2026-03-27T01:05:10,686 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:05:10,688 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:05:10,690 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:05:10,693 creating build/lib/omicverse/external/spaceflow 2026-03-27T01:05:10,694 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:05:10,697 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:05:10,699 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:05:10,702 creating build/lib/omicverse/external/bulk2single 2026-03-27T01:05:10,703 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T01:05:10,706 creating build/lib/omicverse/external/tosica 2026-03-27T01:05:10,707 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T01:05:10,710 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T01:05:10,713 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T01:05:10,715 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T01:05:10,717 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T01:05:10,720 creating build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,722 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,724 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,727 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,729 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,732 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,734 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:05:10,737 creating build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,738 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,741 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,743 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,746 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,748 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,751 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:10,754 creating build/lib/omicverse/external/harmony 2026-03-27T01:05:10,755 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T01:05:10,757 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T01:05:10,760 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T01:05:10,764 creating build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,765 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,768 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,771 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,773 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,776 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,779 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,781 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,784 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,786 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,789 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,793 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,798 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,801 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,804 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,808 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:05:10,813 creating build/lib/omicverse/external/spaco 2026-03-27T01:05:10,815 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,819 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,821 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,824 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,829 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,833 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,838 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,843 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,848 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T01:05:10,854 creating build/lib/omicverse/external/VIA 2026-03-27T01:05:10,856 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,865 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,872 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,884 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,886 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,889 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,891 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T01:05:10,898 creating build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,899 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,901 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,903 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,905 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,907 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,910 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,912 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,913 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:05:10,916 creating build/lib/omicverse/external/commot 2026-03-27T01:05:10,917 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T01:05:10,920 creating build/lib/omicverse/external/datacollect 2026-03-27T01:05:10,921 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:05:10,923 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:05:10,926 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:05:10,929 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,930 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,932 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,934 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,936 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,938 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:05:10,940 creating build/lib/omicverse/external/topact 2026-03-27T01:05:10,941 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,943 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,945 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,948 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,950 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,952 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,953 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,957 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T01:05:10,960 creating build/lib/omicverse/external/flowsig 2026-03-27T01:05:10,961 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T01:05:10,963 creating build/lib/omicverse/external/PROST 2026-03-27T01:05:10,964 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,966 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,969 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,971 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,973 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,976 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,978 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T01:05:10,981 creating build/lib/omicverse/external/scrublet 2026-03-27T01:05:10,982 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:05:10,984 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:05:10,986 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:05:10,989 creating build/lib/omicverse/external/starfysh 2026-03-27T01:05:10,990 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:10,993 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:10,996 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:10,998 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,001 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,002 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,005 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,007 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,010 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:05:11,013 creating build/lib/omicverse/external/BINARY 2026-03-27T01:05:11,014 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:05:11,016 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:05:11,018 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:05:11,020 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:05:11,023 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,024 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,027 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,029 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,034 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,036 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:05:11,039 creating build/lib/omicverse/external/STT 2026-03-27T01:05:11,040 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T01:05:11,042 creating build/lib/omicverse/external/GNTD 2026-03-27T01:05:11,043 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:05:11,046 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:05:11,048 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:05:11,050 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:05:11,053 creating build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,054 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,057 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,059 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,061 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,064 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,066 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,068 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,070 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,072 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,075 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,077 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,079 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:05:11,081 creating build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,082 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,085 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,086 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,089 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,091 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,093 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,096 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,098 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,101 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:05:11,103 creating build/lib/omicverse/external/scMulan 2026-03-27T01:05:11,104 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:05:11,107 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:05:11,108 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:05:11,111 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,112 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,115 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,117 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,119 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,121 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:05:11,123 creating build/lib/omicverse/external/bin2cell 2026-03-27T01:05:11,124 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:05:11,128 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:05:11,130 creating build/lib/omicverse/external/cnmf 2026-03-27T01:05:11,131 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:05:11,135 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:05:11,139 creating build/lib/omicverse/external/scdiffusion 2026-03-27T01:05:11,140 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:05:11,142 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:05:11,144 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:05:11,146 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:05:11,149 creating build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,150 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,152 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,154 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,156 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,157 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,159 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,161 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:05:11,164 creating build/lib/omicverse/external/cellanova 2026-03-27T01:05:11,165 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:05:11,167 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:05:11,169 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:05:11,172 creating build/lib/omicverse/external/tape 2026-03-27T01:05:11,173 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,175 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,177 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,179 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,181 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,183 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T01:05:11,187 creating build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,188 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,190 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,192 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,194 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,196 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,198 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,201 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,203 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,205 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,207 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,209 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,211 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,213 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:05:11,216 creating build/lib/omicverse/external/gaston 2026-03-27T01:05:11,217 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,219 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,222 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,224 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,226 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,227 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,229 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,232 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,234 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,235 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,237 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,239 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,242 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,244 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,246 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,248 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T01:05:11,251 creating build/lib/omicverse/external/somde 2026-03-27T01:05:11,252 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T01:05:11,255 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T01:05:11,257 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T01:05:11,261 creating build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,263 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,266 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,268 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,271 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,274 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,318 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:05:11,323 creating build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,324 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,328 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,331 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,334 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,337 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,340 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,342 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,345 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,348 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,351 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,354 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:05:11,358 creating build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,359 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,362 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,368 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,372 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,374 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,377 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,380 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,383 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,386 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:05:11,390 creating build/lib/omicverse/external/mofapy2 2026-03-27T01:05:11,392 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:05:11,394 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:05:11,396 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:05:11,400 creating build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,401 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,404 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,406 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,409 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,412 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:11,417 creating build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,418 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,421 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,423 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,425 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,427 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,429 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,432 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,435 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,438 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,440 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:05:11,443 creating build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,444 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,446 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,448 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,450 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,452 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,453 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,455 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:05:11,458 creating build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,459 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,461 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,463 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,465 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,467 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,470 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,471 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,473 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,475 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,477 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,479 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,481 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,482 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,484 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,486 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,488 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,490 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,492 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,495 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,497 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,499 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:05:11,501 creating build/lib/omicverse/external/palantir 2026-03-27T01:05:11,502 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,505 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,508 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,510 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,513 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,517 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,520 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,522 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,524 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,526 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,528 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T01:05:11,531 creating build/lib/omicverse/external/scanorama 2026-03-27T01:05:11,532 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:05:11,535 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:05:11,537 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:05:11,540 creating build/lib/omicverse/external/CAST 2026-03-27T01:05:11,542 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,545 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,548 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,551 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,553 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,555 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,558 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T01:05:11,561 creating build/lib/omicverse/external/mpl_chord 2026-03-27T01:05:11,562 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:05:11,565 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:05:11,567 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:05:11,570 creating build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,572 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,575 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,577 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,581 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,583 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:05:11,586 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T01:05:11,587 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:05:11,590 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:05:11,592 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:05:11,594 creating build/lib/omicverse/external/nocd/nn 2026-03-27T01:05:11,596 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:05:11,598 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:05:11,600 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:05:11,603 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:05:11,605 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:05:11,607 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:05:11,609 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:05:11,612 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:05:11,615 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,616 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,619 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,622 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,624 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,626 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,629 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,631 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,634 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:05:11,636 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:11,637 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:11,640 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:11,643 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:11,645 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:11,647 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:11,649 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:11,652 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,654 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,656 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,659 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,662 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,665 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:11,668 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,670 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,673 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,675 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,678 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,680 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,683 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,685 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,688 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,690 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,692 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,695 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,698 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:11,702 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,703 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,705 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,709 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,713 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,717 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,720 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,723 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,725 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,728 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,731 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:11,735 creating build/lib/omicverse/external/spaco/external 2026-03-27T01:05:11,737 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:05:11,740 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:05:11,742 creating build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,744 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,747 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,749 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,751 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,753 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:05:11,756 creating build/lib/omicverse/external/commot/plotting 2026-03-27T01:05:11,756 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:05:11,760 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:05:11,761 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:05:11,765 creating build/lib/omicverse/external/commot/tools 2026-03-27T01:05:11,766 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:05:11,769 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:05:11,771 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:05:11,775 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:05:11,776 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:05:11,778 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:05:11,780 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:05:11,783 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,784 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,786 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,789 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,790 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,793 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:11,798 creating build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,799 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,802 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,804 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,807 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,809 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,812 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,815 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,817 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,819 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,822 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,824 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,826 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,829 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,831 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,833 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,836 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,838 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,840 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,842 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,844 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,847 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,849 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,852 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,853 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,856 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,859 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,861 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,863 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,865 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,867 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,869 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,872 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,874 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,876 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:05:11,879 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,880 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,883 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,885 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,888 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,890 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,892 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,894 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,897 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,899 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,902 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,903 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,906 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,908 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,911 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,913 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,916 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,918 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,921 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,923 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,925 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,927 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,930 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:05:11,933 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,934 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,936 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,938 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,940 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,942 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,945 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:05:11,948 creating build/lib/omicverse/external/datacollect/config 2026-03-27T01:05:11,949 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:05:11,951 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:05:11,953 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,954 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,957 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,959 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,962 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,964 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,966 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,968 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,971 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,973 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:11,976 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,977 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,980 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,982 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,984 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,987 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,989 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,991 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,994 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:11,996 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:11,997 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:12,000 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:12,002 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:12,003 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:12,006 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,007 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,010 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,012 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,014 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,016 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,018 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,020 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:12,023 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,024 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,026 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,028 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,031 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,032 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,035 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:05:12,037 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:05:12,038 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:05:12,040 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:05:12,043 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:05:12,044 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:05:12,047 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:05:12,049 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T01:05:12,050 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:05:12,052 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:05:12,054 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:05:12,056 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:05:12,059 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,060 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,062 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,064 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,067 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,069 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,070 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:12,074 creating build/lib/omicverse/external/single/arboreto 2026-03-27T01:05:12,075 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:05:12,078 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:05:12,080 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:05:12,081 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:05:12,084 creating build/lib/omicverse/external/STT/tl 2026-03-27T01:05:12,085 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:05:12,087 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:05:12,089 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:05:12,091 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:05:12,094 creating build/lib/omicverse/external/STT/pl 2026-03-27T01:05:12,095 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:05:12,097 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:05:12,099 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:05:12,102 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:05:12,105 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:12,106 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:12,108 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T01:05:12,109 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:05:12,111 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:05:12,114 creating build/lib/omicverse/external/scMulan/model 2026-03-27T01:05:12,115 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:05:12,118 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:05:12,122 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:12,124 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:12,128 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:05:12,129 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:05:12,132 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:05:12,135 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:05:12,138 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,139 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,141 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,143 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,146 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,149 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,151 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,154 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,156 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,159 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,162 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,164 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,167 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,169 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,171 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,174 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,177 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,181 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,183 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:12,187 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,188 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,191 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,193 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,197 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,199 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,202 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:05:12,205 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:05:12,206 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:05:12,209 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:05:12,212 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,213 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,215 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,217 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,221 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,223 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:05:12,226 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T01:05:12,227 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:05:12,229 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:05:12,235 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,236 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,238 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,241 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,244 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,247 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,249 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,251 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,254 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,257 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,260 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,262 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:12,265 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,267 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,271 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,273 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,276 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,279 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,281 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,284 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,287 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,289 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,291 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,295 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,297 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,300 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,303 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,306 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,308 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,311 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,313 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:12,318 creating build/lib/omicverse/external/space/cell2location 2026-03-27T01:05:12,320 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:05:12,322 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:05:12,326 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:05:12,327 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:05:12,329 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:05:12,332 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:05:12,335 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,337 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,339 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,341 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,345 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,347 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:12,351 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:12,352 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:12,355 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:12,357 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:12,359 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:12,362 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,363 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,367 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,369 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,373 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,376 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:12,379 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:12,381 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:12,383 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:12,387 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,388 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,391 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,394 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,397 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,399 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,401 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,404 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,407 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:05:12,410 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:05:12,412 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:05:12,415 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:05:12,417 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:05:12,420 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:12,421 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:12,424 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:12,427 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:12,429 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,430 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,432 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,433 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,436 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,437 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:12,440 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:12,441 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:12,444 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:12,446 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:12,448 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:12,449 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:12,452 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:12,456 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:12,458 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:05:12,459 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:05:12,461 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:05:12,464 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:05:12,466 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:05:12,467 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:05:12,470 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:05:12,471 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:05:12,474 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,475 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,479 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,482 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,484 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,486 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,489 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,491 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,493 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:05:12,497 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,498 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,499 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,502 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,504 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,506 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:05:12,508 creating build/lib/omicverse/external/CAST/model 2026-03-27T01:05:12,509 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:05:12,511 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:05:12,513 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:05:12,515 creating build/lib/omicverse/io/bulk 2026-03-27T01:05:12,516 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T01:05:12,519 creating build/lib/omicverse/io/single 2026-03-27T01:05:12,520 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T01:05:12,522 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T01:05:12,523 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T01:05:12,526 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T01:05:12,529 creating build/lib/omicverse/io/general 2026-03-27T01:05:12,530 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T01:05:12,532 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T01:05:12,534 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T01:05:12,536 creating build/lib/omicverse/io/spatial 2026-03-27T01:05:12,537 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T01:05:12,540 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T01:05:12,541 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T01:05:12,545 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T01:05:12,548 creating build/lib/omicverse/jarvis/memory 2026-03-27T01:05:12,549 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:05:12,551 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:05:12,553 creating build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,554 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,556 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,558 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,561 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,562 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,564 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,566 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:05:12,568 creating build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,569 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,571 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,574 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,577 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,579 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,582 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,585 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:05:12,589 creating build/lib/omicverse/jarvis/gateway 2026-03-27T01:05:12,590 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:05:12,592 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:05:12,594 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:05:12,596 creating build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,597 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,599 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,601 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,604 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,606 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,608 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,610 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,612 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,615 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,618 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,620 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,623 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:05:12,626 creating build/lib/omicverse/popv/hub 2026-03-27T01:05:12,627 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T01:05:12,629 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T01:05:12,631 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T01:05:12,633 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T01:05:12,635 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T01:05:12,639 running egg_info 2026-03-27T01:05:12,651 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:05:12,669 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:05:12,670 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:05:12,679 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:05:12,681 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:05:12,859 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:05:12,919 reading manifest template 'MANIFEST.in' 2026-03-27T01:05:13,781 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:05:15,094 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:05:15,530 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:05:20,274 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:05:20,714 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:05:21,155 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:05:21,595 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:05:22,071 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:05:22,555 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:05:23,022 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:05:23,025 no previously-included directories found matching '.git' 2026-03-27T01:05:23,028 no previously-included directories found matching '.github' 2026-03-27T01:05:23,031 no previously-included directories found matching '.claude' 2026-03-27T01:05:23,034 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:05:23,037 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:05:23,040 no previously-included directories found matching '.vscode' 2026-03-27T01:05:23,043 no previously-included directories found matching 'docs' 2026-03-27T01:05:23,046 no previously-included directories found matching 'tests' 2026-03-27T01:05:23,049 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:05:23,052 no previously-included directories found matching 'READMEM' 2026-03-27T01:05:23,055 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:05:23,058 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:05:23,061 no previously-included directories found matching 'tmp' 2026-03-27T01:05:23,064 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:05:23,067 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:05:23,073 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:05:23,081 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:05:23,087 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:05:23,088 adding license file 'LICENSE' 2026-03-27T01:05:23,157 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:05:23,253 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:05:23,255 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T01:05:23,258 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T01:05:23,260 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T01:05:23,265 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T01:05:23,268 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T01:05:23,343 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T01:05:23,345 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T01:05:23,348 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T01:05:23,350 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T01:05:23,353 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T01:05:23,356 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T01:05:23,359 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T01:05:23,362 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T01:05:23,364 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T01:05:23,367 creating build/lib/omicverse/single/templates/img 2026-03-27T01:05:23,368 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T01:05:23,370 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:05:23,373 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:05:23,377 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:05:23,380 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:23,387 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:23,389 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:23,392 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:05:23,394 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:05:23,395 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:05:23,397 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:23,426 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:23,452 creating build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,453 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,458 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,463 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,482 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,500 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:05:23,517 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:05:23,520 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:05:23,523 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:05:23,526 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T01:05:23,528 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:23,535 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:23,537 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:23,668 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:23,673 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:23,903 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:23,905 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:23,910 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:23,915 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:23,917 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:23,925 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:23,933 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:23,946 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,948 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,951 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,954 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,958 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,961 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,965 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,969 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,972 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,976 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,979 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,982 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,986 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:05:23,990 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:23,993 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:23,997 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:24,001 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:05:24,004 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:24,439 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:24,466 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:24,467 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:24,475 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:24,483 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:24,490 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:24,491 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:24,509 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:24,526 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:24,543 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:05:24,647 installing to build/bdist.linux-armv7l/wheel 2026-03-27T01:05:24,648 running install 2026-03-27T01:05:24,671 running install_lib 2026-03-27T01:05:24,677 creating build/bdist.linux-armv7l/wheel 2026-03-27T01:05:24,679 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T01:05:24,681 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T01:05:24,682 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,684 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,686 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,688 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,690 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,692 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,694 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,696 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,698 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,700 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:05:24,702 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:24,705 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T01:05:24,706 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,708 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,711 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,714 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,716 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,719 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,722 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,725 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,727 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,730 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,732 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,735 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,737 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,741 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,744 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,747 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,749 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,750 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,753 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,756 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,758 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T01:05:24,759 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:05:24,762 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:05:24,764 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:05:24,766 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,768 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,770 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:05:24,773 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T01:05:24,774 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,777 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,779 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,781 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,784 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,786 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,789 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,791 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,793 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,796 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:05:24,799 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:24,802 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T01:05:24,803 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T01:05:24,805 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:24,809 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T01:05:24,810 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,812 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,815 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,818 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,821 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,824 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,827 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,830 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,833 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,835 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,837 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,839 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,843 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T01:05:24,844 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,846 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,849 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,851 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,854 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,857 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,860 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,862 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,865 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,867 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,870 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,872 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,875 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:05:24,877 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,883 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,885 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,888 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,889 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,892 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,895 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,897 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,899 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,901 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,903 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,906 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,908 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,910 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,913 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T01:05:24,914 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,917 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,919 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,921 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,923 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,925 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,927 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,930 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,932 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,934 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:05:24,937 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,940 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,942 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T01:05:24,943 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,945 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,948 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,950 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,952 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,955 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,957 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:05:24,959 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,962 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,964 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:24,967 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T01:05:24,968 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,970 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,972 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,975 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,977 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,979 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,981 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,984 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,986 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,988 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,990 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,994 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,997 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:24,999 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:25,002 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:05:25,004 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:25,007 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:25,009 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:05:25,013 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T01:05:25,014 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,016 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,019 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,021 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,023 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,025 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,027 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,030 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T01:05:25,031 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T01:05:25,033 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,035 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,038 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,040 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:05:25,065 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T01:05:25,066 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:05:25,068 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:05:25,070 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:05:25,073 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:05:25,076 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:05:25,079 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T01:05:25,080 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,082 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,084 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,087 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,089 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,091 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,093 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,096 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:05:25,099 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T01:05:25,100 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,103 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,105 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,107 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,110 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,113 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,115 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,118 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,121 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:05:25,124 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T01:05:25,126 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,129 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,131 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,134 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,137 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,143 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,147 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,150 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,152 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,156 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,158 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,160 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,163 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,166 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,168 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,171 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,173 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,175 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,177 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,181 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,183 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,186 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,188 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,192 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,194 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,197 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,200 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,203 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,206 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,210 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,213 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,215 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,219 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,222 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,225 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,227 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,230 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,232 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,235 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,238 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,241 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,243 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,246 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,248 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,251 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:05:25,258 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T01:05:25,259 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,261 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,264 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,266 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,269 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T01:05:25,270 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:05:25,273 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:05:25,275 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:05:25,279 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:05:25,282 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,284 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:05:25,287 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T01:05:25,288 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,290 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,294 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,299 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T01:05:25,300 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:05:25,303 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:05:25,305 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:05:25,308 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,310 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,313 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T01:05:25,315 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,317 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,319 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,322 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,324 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,327 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,328 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,330 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,333 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,335 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,337 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,340 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,342 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:05:25,345 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,353 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,356 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T01:05:25,357 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T01:05:25,359 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:05:25,363 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,367 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,369 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T01:05:25,371 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,374 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,375 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,377 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,379 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,382 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,384 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:05:25,387 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T01:05:25,388 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:05:25,390 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:05:25,393 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,395 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T01:05:25,396 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,399 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,400 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,403 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,405 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,406 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:05:25,409 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,411 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,413 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,415 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:05:25,417 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:25,418 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:25,465 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:25,468 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:25,471 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:05:25,497 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T01:05:25,498 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:05:25,501 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:05:25,503 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:05:25,507 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T01:05:25,508 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,511 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,514 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,516 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,518 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,522 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,523 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,526 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,529 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,531 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,534 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:05:25,537 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:05:25,539 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,543 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,550 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T01:05:25,552 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T01:05:25,554 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:05:25,556 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:05:25,559 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:05:25,561 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:05:25,563 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:05:25,565 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,567 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,570 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,572 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,575 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T01:05:25,576 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:05:25,580 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:05:25,583 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T01:05:25,584 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:05:25,587 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:05:25,589 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:05:25,592 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T01:05:25,593 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:05:25,595 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:05:25,597 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:05:25,600 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T01:05:25,602 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T01:05:25,604 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,606 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:05:25,609 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T01:05:25,611 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T01:05:25,612 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:05:25,614 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:05:25,617 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:05:25,619 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,621 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,623 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,626 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,628 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,630 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,633 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:05:25,635 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,636 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,639 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,641 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,643 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,645 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:05:25,648 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T01:05:25,649 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:05:25,651 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:05:25,654 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T01:05:25,655 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:05:25,657 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:05:25,660 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T01:05:25,661 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:05:25,663 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:05:25,664 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:05:25,667 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:05:25,669 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T01:05:25,670 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T01:05:25,671 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:05:25,673 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:05:25,676 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T01:05:25,677 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:05:25,679 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:05:25,681 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:05:25,684 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T01:05:25,686 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:05:25,691 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:05:25,693 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:05:25,696 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,699 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,704 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,709 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,714 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,720 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:05:25,723 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T01:05:25,724 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T01:05:25,726 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T01:05:25,727 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T01:05:25,730 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T01:05:25,731 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T01:05:25,733 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T01:05:25,735 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,736 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,739 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,741 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,743 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,745 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,747 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,749 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:05:25,751 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,753 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,756 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,758 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,761 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,763 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,766 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,769 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,771 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,774 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,776 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,779 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:05:25,782 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,785 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,787 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:05:25,790 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:25,792 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T01:05:25,793 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:05:25,796 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:05:25,798 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:05:25,801 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T01:05:25,802 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:05:25,805 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:05:25,807 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:05:25,809 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:25,812 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T01:05:25,813 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T01:05:25,814 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:05:25,829 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:05:25,831 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:05:25,842 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:05:25,854 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:05:25,856 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:05:25,857 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:05:25,860 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:05:25,935 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:05:25,937 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:05:25,942 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T01:05:25,943 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,946 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,948 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,950 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,952 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,954 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,955 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,958 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,961 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,964 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,967 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,970 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T01:05:25,971 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:05:25,974 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:05:25,976 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:05:25,978 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:05:25,980 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:05:25,982 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,984 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:05:25,987 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:25,989 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:05:25,993 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T01:05:25,994 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T01:05:25,996 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T01:05:25,997 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:05:25,999 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:05:26,001 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:05:26,002 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,004 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,006 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,008 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,010 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,012 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T01:05:26,013 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:05:26,015 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:05:26,017 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:05:26,019 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:05:26,021 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:05:26,023 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T01:05:26,024 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:05:26,026 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:05:26,028 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:05:26,031 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T01:05:26,032 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T01:05:26,033 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:05:26,035 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:05:26,038 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:05:26,041 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T01:05:26,042 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,045 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,047 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,049 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,051 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,054 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:26,055 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:26,057 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:26,059 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:05:26,061 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,064 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:26,065 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:26,066 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:05:26,068 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,071 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:05:26,072 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:05:26,074 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:05:26,076 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:05:26,079 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T01:05:26,080 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:05:26,082 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:05:26,084 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:05:26,087 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T01:05:26,088 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T01:05:26,090 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,091 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,093 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,095 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,097 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,100 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:05:26,103 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,104 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,107 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:26,108 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:26,191 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:26,199 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:05:26,203 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,205 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,207 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,209 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,211 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,213 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,215 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,217 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,218 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,221 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,223 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:05:26,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,227 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,229 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,233 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,236 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,239 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,241 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,244 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,246 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,249 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,251 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,254 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:05:26,260 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T01:05:26,261 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:05:26,263 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:05:26,266 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:05:26,268 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:05:26,270 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:05:26,273 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T01:05:26,274 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,276 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,278 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,280 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,283 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,285 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:05:26,288 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T01:05:26,289 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,291 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,293 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,295 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,297 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,299 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,302 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:05:26,305 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T01:05:26,306 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:05:26,307 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:05:26,310 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:05:26,313 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T01:05:26,314 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,317 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,319 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,321 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,323 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,326 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,327 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,329 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,331 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,333 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,336 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,340 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,343 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,346 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,350 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:05:26,353 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T01:05:26,355 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,357 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,360 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,363 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,366 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,368 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,370 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,373 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,375 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T01:05:26,377 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:05:26,380 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:05:26,382 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:05:26,385 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T01:05:26,387 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,394 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,399 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,407 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,410 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,413 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,415 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:05:26,427 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T01:05:26,429 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,432 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,435 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,439 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,442 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,446 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,449 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,451 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:05:26,456 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T01:05:26,458 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T01:05:26,460 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:05:26,464 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:05:26,466 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:05:26,470 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:05:26,473 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:05:26,476 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T01:05:26,478 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:05:26,482 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:05:26,485 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:05:26,489 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T01:05:26,492 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T01:05:26,494 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:05:26,499 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:05:26,502 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:05:26,507 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T01:05:26,509 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:05:26,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T01:05:26,514 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T01:05:26,517 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:26,519 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:26,524 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:05:26,530 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:26,532 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:26,536 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:26,542 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:05:26,546 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:05:26,549 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:05:26,552 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,553 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,556 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,559 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,561 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,564 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:05:26,567 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T01:05:26,569 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:05:26,573 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T01:05:26,574 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,577 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,579 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,582 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,584 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,587 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,590 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,592 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,595 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,598 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,600 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,603 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,606 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,608 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,611 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,613 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,616 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,619 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,621 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,623 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,626 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,629 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,631 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,634 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,635 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,638 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,641 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,643 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,646 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,648 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,651 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,653 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,656 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:05:26,659 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,661 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,663 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,666 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,668 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,671 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,674 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,676 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,679 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:05:26,681 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,684 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,687 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T01:05:26,689 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:05:26,692 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:05:26,694 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:05:26,696 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:05:26,699 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,701 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,704 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,706 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,709 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,712 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,713 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,716 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,719 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,721 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,724 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,726 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,728 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:05:26,731 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,732 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,735 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,738 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,740 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,743 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,746 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:05:26,748 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,751 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,755 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,758 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:05:26,762 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T01:05:26,763 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,766 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,769 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,771 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,774 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,777 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,779 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,782 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,784 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,787 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,789 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,792 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,795 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,797 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,800 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,802 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,805 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,808 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,811 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,813 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,816 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,818 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:05:26,821 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T01:05:26,823 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,825 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,827 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,830 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,833 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,836 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:05:26,839 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:05:26,842 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:05:26,844 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:05:26,848 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T01:05:26,849 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,852 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,855 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,857 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,859 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,862 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,865 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,868 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,871 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,873 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,876 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,879 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:05:26,882 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T01:05:26,883 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:05:26,885 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:05:26,887 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:05:26,891 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T01:05:26,892 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:05:26,895 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:05:26,897 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:05:26,899 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:05:26,901 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:05:26,904 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T01:05:26,905 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,907 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,909 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,913 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,915 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,917 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,919 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,922 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:05:26,926 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T01:05:26,927 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T01:05:26,929 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:05:26,931 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:05:26,935 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T01:05:26,937 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:05:26,940 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:05:26,942 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T01:05:26,944 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T01:05:26,946 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:05:26,948 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:05:26,950 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:05:26,952 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:05:26,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,957 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,959 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,961 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,964 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,966 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,968 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:05:26,972 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T01:05:26,974 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,976 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,979 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,981 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,984 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,986 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,989 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:05:26,992 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T01:05:26,994 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T01:05:26,996 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:05:26,999 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:05:27,000 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:05:27,002 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:05:27,005 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T01:05:27,007 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:05:27,009 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:05:27,012 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:05:27,015 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T01:05:27,016 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,019 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,022 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,025 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,028 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,030 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,032 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,035 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,038 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:05:27,041 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T01:05:27,042 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:05:27,044 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:05:27,047 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:05:27,049 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:05:27,052 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T01:05:27,053 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:05:27,056 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:05:27,059 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:05:27,065 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:05:27,067 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:05:27,069 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T01:05:27,072 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T01:05:27,074 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T01:05:27,076 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T01:05:27,078 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:05:27,080 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:05:27,083 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:05:27,085 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:05:27,087 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T01:05:27,088 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:05:27,091 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:05:27,093 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:05:27,096 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:05:27,099 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T01:05:27,100 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:05:27,103 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:05:27,105 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:05:27,107 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:05:27,111 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T01:05:27,112 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,115 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,117 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,119 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,122 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,125 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,127 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,129 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,132 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,136 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,138 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,141 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:05:27,143 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T01:05:27,145 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,148 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,150 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,153 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,156 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,158 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,161 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,165 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T01:05:27,166 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:05:27,169 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:05:27,172 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:05:27,174 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:05:27,176 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:05:27,179 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,181 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:05:27,184 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T01:05:27,186 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:05:27,189 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T01:05:27,190 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:05:27,192 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:05:27,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T01:05:27,196 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:05:27,199 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:05:27,201 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:05:27,204 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T01:05:27,206 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:27,207 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:27,233 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:27,670 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:05:27,672 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:05:27,676 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,677 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,680 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,682 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,684 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,687 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:05:27,689 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T01:05:27,690 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:05:27,695 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:05:27,697 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T01:05:27,699 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:05:27,702 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:05:27,706 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T01:05:27,707 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:05:27,710 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T01:05:27,711 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:05:27,714 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:05:27,717 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:05:27,718 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:05:27,721 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,723 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,725 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,727 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,730 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,732 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,734 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,737 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,739 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,742 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,744 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,746 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,749 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,751 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,753 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,755 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,758 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,761 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,764 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:05:27,766 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:05:27,768 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:05:27,772 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T01:05:27,773 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,776 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,778 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,780 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,782 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,784 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,786 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:05:27,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T01:05:27,791 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:05:27,793 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:05:27,796 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:05:27,799 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T01:05:27,800 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,803 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,805 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,807 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,810 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,813 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:05:27,816 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T01:05:27,817 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,819 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,822 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,824 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,826 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,828 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,831 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,834 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,836 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,839 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,841 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,843 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,845 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:05:27,849 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T01:05:27,850 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,852 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,855 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,857 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,860 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,862 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,864 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,867 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,869 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,871 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,873 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,876 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,878 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,880 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,882 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,885 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:05:27,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T01:05:27,889 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:05:27,891 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:05:27,893 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:05:27,897 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T01:05:27,898 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,900 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,902 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,905 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,907 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,910 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:05:27,913 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T01:05:27,915 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,918 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,921 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,923 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,925 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,927 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,929 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,932 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,934 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,936 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,938 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:05:27,941 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T01:05:27,942 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,944 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,947 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,950 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,952 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,954 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,956 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,958 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,961 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:05:27,964 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T01:05:27,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,966 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,968 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,970 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,973 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,974 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,977 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:05:27,979 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:05:27,981 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:05:27,983 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:05:27,985 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T01:05:27,986 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:05:27,989 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:05:27,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T01:05:27,992 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:27,994 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:27,996 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:27,997 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,000 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,002 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,003 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,005 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,008 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,010 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,012 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,014 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:05:28,016 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:05:28,018 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:05:28,019 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:05:28,023 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,024 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,027 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,029 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,031 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,034 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,036 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,038 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,041 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,043 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,044 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,047 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,049 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,051 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,053 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,056 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,057 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,060 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,062 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:05:28,064 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:05:28,066 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:05:28,068 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T01:05:28,069 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:05:28,071 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:05:28,074 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:28,076 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:28,083 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:28,091 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:28,093 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:28,157 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:28,175 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:05:28,196 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:05:28,205 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T01:05:28,207 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T01:05:28,208 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T01:05:28,209 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:05:28,211 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:05:28,214 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:05:28,216 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,217 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,219 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,221 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,223 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,225 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:05:28,227 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:05:28,230 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:28,231 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:28,233 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:28,235 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:28,237 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:05:28,239 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T01:05:28,240 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,243 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:28,244 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:28,247 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:28,249 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:05:28,252 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,253 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,255 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,257 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,260 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,261 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:05:28,264 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:28,265 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:28,268 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:28,270 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:05:28,272 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,274 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,277 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:28,278 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:28,280 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:28,283 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:05:28,284 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,287 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,290 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:05:28,293 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:28,294 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:28,296 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:05:28,298 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,299 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,302 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,304 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,306 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,308 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,310 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,312 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,315 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:05:28,317 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:05:28,321 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T01:05:28,322 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:05:28,324 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:05:28,327 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:05:28,329 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T01:05:28,330 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,332 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,334 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,336 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,339 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,341 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:05:28,344 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T01:05:28,345 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,347 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,350 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,352 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,354 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,356 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,359 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,361 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,364 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,366 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:05:28,369 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T01:05:28,370 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,372 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,374 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,376 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,377 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,379 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,381 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:05:28,383 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T01:05:28,384 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,386 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,388 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,390 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,393 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T01:05:28,394 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:05:28,396 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:05:28,399 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:05:28,402 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,404 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T01:05:28,408 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:05:28,410 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:05:28,412 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:05:28,414 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,416 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,418 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,420 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,422 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,424 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,426 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T01:05:28,427 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,430 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,433 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,435 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,437 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,439 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,442 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,444 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:05:28,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T01:05:28,448 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:05:28,450 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:05:28,452 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:05:28,453 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:05:28,455 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:05:28,457 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,459 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,461 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,462 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,464 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,466 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,469 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,471 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,473 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:05:28,475 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T01:05:28,476 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,478 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,481 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,483 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,486 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,488 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,491 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,493 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,494 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,496 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,497 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:05:28,500 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T01:05:28,501 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:05:28,503 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:05:28,505 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:05:28,508 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T01:05:28,509 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,512 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,515 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T01:05:28,516 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:05:28,518 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:05:28,519 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:05:28,522 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,524 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,526 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,528 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,530 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:05:28,533 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T01:05:28,534 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:05:28,536 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:05:28,538 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:05:28,541 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T01:05:28,541 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:05:28,544 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:05:28,546 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:05:28,548 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:05:28,550 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:05:28,553 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T01:05:28,554 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,557 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,561 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,564 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,566 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,569 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,571 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,574 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,576 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,584 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,587 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,589 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,592 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,595 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,601 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,603 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,607 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,609 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,613 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,615 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:05:28,618 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T01:05:28,620 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T01:05:28,621 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T01:05:28,623 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T01:05:28,624 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:05:28,626 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:05:28,627 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:05:28,630 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:05:28,632 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T01:05:28,634 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T01:05:28,635 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:05:28,637 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:05:28,639 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:05:28,641 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T01:05:28,642 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:05:28,644 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:05:28,646 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:05:28,649 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:05:28,652 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T01:05:28,653 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,656 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,658 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,663 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,666 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,670 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,672 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,675 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,678 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,681 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,685 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,688 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,691 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,695 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:05:28,699 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T01:05:28,701 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,703 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,707 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,712 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T01:05:28,713 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:05:28,716 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:05:28,718 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,721 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,725 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T01:05:28,726 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,728 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,731 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,734 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,736 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,739 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,741 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:05:28,743 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,747 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,749 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,752 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,756 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T01:05:28,757 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,759 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,763 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,766 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,769 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,772 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,775 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:05:28,779 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,782 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,784 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,787 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,789 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,792 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T01:05:28,793 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:05:28,795 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:05:28,797 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:05:28,799 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:05:28,802 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T01:05:28,803 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,805 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,807 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,810 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T01:05:28,811 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,814 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,816 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,818 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,820 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,822 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,824 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,827 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,829 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,831 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,834 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,836 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:05:28,838 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,841 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,844 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T01:05:28,845 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:05:28,847 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:05:28,849 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:05:28,852 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:05:28,853 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:05:28,856 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:05:28,858 running install_egg_info 2026-03-27T01:05:28,864 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.5-py3.11.egg-info 2026-03-27T01:05:28,878 running install_scripts 2026-03-27T01:05:28,892 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.5.dist-info/WHEEL 2026-03-27T01:05:28,895 creating '/tmp/pip-wheel-qyf30nsq/.tmp-ogxkvoa4/omicverse-2.0.5-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T01:05:28,899 adding 'omicverse/__init__.py' 2026-03-27T01:05:28,901 adding 'omicverse/_lazy_loader.py' 2026-03-27T01:05:28,903 adding 'omicverse/_monitor.py' 2026-03-27T01:05:28,909 adding 'omicverse/_registry.py' 2026-03-27T01:05:28,914 adding 'omicverse/_settings.py' 2026-03-27T01:05:28,917 adding 'omicverse/claw.py' 2026-03-27T01:05:28,919 adding 'omicverse/cli.py' 2026-03-27T01:05:28,921 adding 'omicverse/agent/__init__.py' 2026-03-27T01:05:28,924 adding 'omicverse/alignment/STAR.py' 2026-03-27T01:05:28,925 adding 'omicverse/alignment/__init__.py' 2026-03-27T01:05:28,927 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T01:05:28,929 adding 'omicverse/alignment/fastp.py' 2026-03-27T01:05:28,931 adding 'omicverse/alignment/featureCount.py' 2026-03-27T01:05:28,933 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T01:05:28,937 adding 'omicverse/alignment/kb_api.py' 2026-03-27T01:05:28,939 adding 'omicverse/alignment/pipeline.py' 2026-03-27T01:05:28,940 adding 'omicverse/alignment/prefetch.py' 2026-03-27T01:05:28,942 adding 'omicverse/biocontext/__init__.py' 2026-03-27T01:05:28,944 adding 'omicverse/biocontext/_client.py' 2026-03-27T01:05:28,947 adding 'omicverse/biocontext/_tools.py' 2026-03-27T01:05:28,951 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T01:05:28,955 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T01:05:28,959 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T01:05:28,960 adding 'omicverse/bulk/__init__.py' 2026-03-27T01:05:29,003 adding 'omicverse/bulk/_chm13.py' 2026-03-27T01:05:29,008 adding 'omicverse/bulk/_combat.py' 2026-03-27T01:05:29,010 adding 'omicverse/bulk/_decov.py' 2026-03-27T01:05:29,012 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T01:05:29,017 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T01:05:29,019 adding 'omicverse/bulk/_network.py' 2026-03-27T01:05:29,021 adding 'omicverse/bulk/_tcga.py' 2026-03-27T01:05:29,022 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T01:05:29,024 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T01:05:29,028 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T01:05:29,029 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T01:05:29,032 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T01:05:29,037 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T01:05:29,041 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T01:05:29,043 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T01:05:29,046 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T01:05:29,048 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T01:05:29,050 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T01:05:29,052 adding 'omicverse/data_files/README.md' 2026-03-27T01:05:29,092 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T01:05:29,095 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T01:05:29,611 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T01:05:29,643 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T01:05:29,646 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T01:05:29,649 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T01:05:29,672 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T01:05:29,714 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T01:05:29,754 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T01:05:29,760 adding 'omicverse/datasets/__init__.py' 2026-03-27T01:05:29,765 adding 'omicverse/datasets/_datasets.py' 2026-03-27T01:05:29,767 adding 'omicverse/datasets/_signatures.py' 2026-03-27T01:05:29,770 adding 'omicverse/external/__init__.py' 2026-03-27T01:05:29,772 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T01:05:29,773 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T01:05:29,774 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T01:05:29,777 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T01:05:29,779 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T01:05:29,782 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T01:05:29,785 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T01:05:29,787 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T01:05:29,789 adding 'omicverse/external/CAST/main.py' 2026-03-27T01:05:29,792 adding 'omicverse/external/CAST/utils.py' 2026-03-27T01:05:29,794 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T01:05:29,795 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T01:05:29,796 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T01:05:29,798 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T01:05:29,800 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T01:05:29,801 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T01:05:29,803 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T01:05:29,805 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T01:05:29,808 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T01:05:29,810 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T01:05:29,813 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T01:05:29,815 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T01:05:29,817 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T01:05:29,819 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T01:05:29,821 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T01:05:29,824 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T01:05:29,826 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T01:05:29,829 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T01:05:29,831 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T01:05:29,832 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T01:05:29,834 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T01:05:29,836 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T01:05:29,838 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T01:05:29,840 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T01:05:29,841 adding 'omicverse/external/GraphST/model.py' 2026-03-27T01:05:29,843 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T01:05:29,844 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T01:05:29,846 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T01:05:29,848 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T01:05:29,849 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T01:05:29,850 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T01:05:29,852 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T01:05:29,853 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T01:05:29,855 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T01:05:29,856 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T01:05:29,858 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T01:05:29,860 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T01:05:29,862 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T01:05:29,863 adding 'omicverse/external/PROST/layers.py' 2026-03-27T01:05:29,865 adding 'omicverse/external/PROST/model.py' 2026-03-27T01:05:29,867 adding 'omicverse/external/PROST/plot.py' 2026-03-27T01:05:29,870 adding 'omicverse/external/PROST/utils.py' 2026-03-27T01:05:29,872 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T01:05:29,874 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T01:05:29,876 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T01:05:29,877 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T01:05:29,900 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T01:05:29,903 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T01:05:29,905 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T01:05:29,906 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T01:05:29,908 adding 'omicverse/external/SEACells/core.py' 2026-03-27T01:05:29,911 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T01:05:29,914 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T01:05:29,915 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T01:05:29,917 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T01:05:29,919 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T01:05:29,922 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T01:05:29,924 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T01:05:29,925 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T01:05:29,927 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T01:05:29,928 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T01:05:29,929 adding 'omicverse/external/SEACells/version.py' 2026-03-27T01:05:29,931 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T01:05:29,932 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T01:05:29,934 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T01:05:29,935 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T01:05:29,937 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T01:05:29,939 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T01:05:29,941 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T01:05:29,943 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T01:05:29,945 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T01:05:29,947 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T01:05:29,949 adding 'omicverse/external/STT/__init__.py' 2026-03-27T01:05:29,950 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T01:05:29,953 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T01:05:29,955 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T01:05:29,957 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T01:05:29,959 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T01:05:29,961 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T01:05:29,963 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T01:05:29,964 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T01:05:29,966 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T01:05:29,968 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T01:05:29,969 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T01:05:29,971 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T01:05:29,973 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T01:05:29,975 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T01:05:29,976 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T01:05:29,978 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T01:05:30,000 adding 'omicverse/external/VIA/core.py' 2026-03-27T01:05:30,003 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T01:05:30,027 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T01:05:30,053 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T01:05:30,067 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T01:05:30,070 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T01:05:30,071 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T01:05:30,084 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T01:05:30,087 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T01:05:30,088 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T01:05:30,090 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T01:05:30,092 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T01:05:30,093 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T01:05:30,095 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T01:05:30,096 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T01:05:30,098 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T01:05:30,099 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T01:05:30,101 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T01:05:30,103 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-03-27T01:05:30,104 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-03-27T01:05:30,106 adding 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2026-03-27T01:05:31,420 adding 'omicverse/external/gseapy/plot.py' 2026-03-27T01:05:31,421 adding 'omicverse/external/gseapy/stats.py' 2026-03-27T01:05:31,423 adding 'omicverse/external/gseapy/utils.py' 2026-03-27T01:05:31,424 adding 'omicverse/external/harmony/__init__.py' 2026-03-27T01:05:31,428 adding 'omicverse/external/harmony/harmony.py' 2026-03-27T01:05:31,429 adding 'omicverse/external/harmony/lisi.py' 2026-03-27T01:05:31,431 adding 'omicverse/external/hotspot/__init__.py' 2026-03-27T01:05:31,432 adding 'omicverse/external/hotspot/bernoulli_model.py' 2026-03-27T01:05:31,433 adding 'omicverse/external/hotspot/danb_model.py' 2026-03-27T01:05:31,436 adding 'omicverse/external/hotspot/hotspot.py' 2026-03-27T01:05:31,438 adding 'omicverse/external/hotspot/knn.py' 2026-03-27T01:05:31,439 adding 'omicverse/external/hotspot/local_stats.py' 2026-03-27T01:05:31,442 adding 'omicverse/external/hotspot/local_stats_pairs.py' 2026-03-27T01:05:31,444 adding 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2026-03-27T01:05:31,512 adding 'omicverse/external/latentvelo/plotting/__init__.py' 2026-03-27T01:05:31,514 adding 'omicverse/external/latentvelo/plotting/metrics.py' 2026-03-27T01:05:31,516 adding 'omicverse/external/latentvelo/plotting/scatter_stream.py' 2026-03-27T01:05:31,517 adding 'omicverse/external/latentvelo/tools/__init__.py' 2026-03-27T01:05:31,519 adding 'omicverse/external/latentvelo/tools/batch_correction.py' 2026-03-27T01:05:31,520 adding 'omicverse/external/latentvelo/tools/cell_trajectories.py' 2026-03-27T01:05:31,522 adding 'omicverse/external/latentvelo/tools/check_velocity.py' 2026-03-27T01:05:31,523 adding 'omicverse/external/latentvelo/tools/trad_velocity.py' 2026-03-27T01:05:31,525 adding 'omicverse/external/mofapy2/__init__.py' 2026-03-27T01:05:31,526 adding 'omicverse/external/mofapy2/config.py' 2026-03-27T01:05:31,527 adding 'omicverse/external/mofapy2/version.py' 2026-03-27T01:05:31,528 adding 'omicverse/external/mofapy2/build_model/__init__.py' 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2026-03-27T01:05:32,385 adding 'omicverse/external/nocd/utils.py' 2026-03-27T01:05:32,387 adding 'omicverse/external/nocd/metrics/__init__.py' 2026-03-27T01:05:32,388 adding 'omicverse/external/nocd/metrics/supervised.py' 2026-03-27T01:05:32,390 adding 'omicverse/external/nocd/metrics/unsupervised.py' 2026-03-27T01:05:32,392 adding 'omicverse/external/nocd/nn/__init__.py' 2026-03-27T01:05:32,393 adding 'omicverse/external/nocd/nn/decoder.py' 2026-03-27T01:05:32,394 adding 'omicverse/external/nocd/nn/gcn.py' 2026-03-27T01:05:32,396 adding 'omicverse/external/nocd/nn/imrpoved_gcn.py' 2026-03-27T01:05:32,398 adding 'omicverse/external/palantir/__init__.py' 2026-03-27T01:05:32,399 adding 'omicverse/external/palantir/config.py' 2026-03-27T01:05:32,402 adding 'omicverse/external/palantir/core.py' 2026-03-27T01:05:32,404 adding 'omicverse/external/palantir/io.py' 2026-03-27T01:05:32,414 adding 'omicverse/external/palantir/plot.py' 2026-03-27T01:05:32,416 adding 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2026-03-27T01:05:32,446 adding 'omicverse/external/pyscenic/prune.py' 2026-03-27T01:05:32,447 adding 'omicverse/external/pyscenic/rss.py' 2026-03-27T01:05:32,450 adding 'omicverse/external/pyscenic/transform.py' 2026-03-27T01:05:32,453 adding 'omicverse/external/pyscenic/utils.py' 2026-03-27T01:05:32,455 adding 'omicverse/external/scMulan/__init__.py' 2026-03-27T01:05:32,457 adding 'omicverse/external/scMulan/scMulan.py' 2026-03-27T01:05:32,459 adding 'omicverse/external/scMulan/scMulan_npu.py' 2026-03-27T01:05:32,461 adding 'omicverse/external/scMulan/model/model.py' 2026-03-27T01:05:32,463 adding 'omicverse/external/scMulan/model/model_kvcache.py' 2026-03-27T01:05:34,171 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv' 2026-03-27T01:05:34,356 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py' 2026-03-27T01:05:34,500 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt' 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