2026-03-27T01:06:35,158 Created temporary directory: /tmp/pip-ephem-wheel-cache-q7vzj18q 2026-03-27T01:06:35,160 Created temporary directory: /tmp/pip-build-tracker-0zmr20we 2026-03-27T01:06:35,160 Initialized build tracking at /tmp/pip-build-tracker-0zmr20we 2026-03-27T01:06:35,161 Created build tracker: /tmp/pip-build-tracker-0zmr20we 2026-03-27T01:06:35,161 Entered build tracker: /tmp/pip-build-tracker-0zmr20we 2026-03-27T01:06:35,162 Created temporary directory: /tmp/pip-wheel-z3w08kz9 2026-03-27T01:06:35,165 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,970 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,970 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,971 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,972 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,972 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,973 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,973 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,974 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,975 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,975 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,976 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,976 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,977 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,977 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:06:35,978 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T01:06:35,978 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T01:06:36,004 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T01:06:36,022 Collecting omicverse==2.0.6 2026-03-27T01:06:36,025 Created temporary directory: /tmp/pip-unpack-ujm7ll3m 2026-03-27T01:06:36,187 Downloading omicverse-2.0.6.tar.gz (11.8 MB) 2026-03-27T01:06:42,056 Added omicverse==2.0.6 from https://files.pythonhosted.org/packages/01/a3/1e902d50ed0c58a8777951194aedb82d691af5d431809ebfd0e137ac0ef8/omicverse-2.0.6.tar.gz to build tracker '/tmp/pip-build-tracker-0zmr20we' 2026-03-27T01:06:42,063 Created temporary directory: /tmp/pip-build-env-q56s62sp 2026-03-27T01:06:42,068 Installing build dependencies: started 2026-03-27T01:06:42,069 Running command pip subprocess to install build dependencies 2026-03-27T01:06:43,346 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T01:06:43,823 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T01:06:43,849 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T01:06:45,622 Collecting setuptools>=61 2026-03-27T01:06:45,695 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T01:06:45,969 Collecting wheel 2026-03-27T01:06:45,989 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T01:06:48,063 Collecting Cython 2026-03-27T01:06:48,983 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T01:06:49,602 Collecting packaging>=24.0 2026-03-27T01:06:49,618 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T01:06:52,610 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T01:06:59,731 Creating /tmp/pip-build-env-q56s62sp/overlay/local/bin 2026-03-27T01:06:59,733 changing mode of /tmp/pip-build-env-q56s62sp/overlay/local/bin/cygdb to 755 2026-03-27T01:06:59,735 changing mode of /tmp/pip-build-env-q56s62sp/overlay/local/bin/cython to 755 2026-03-27T01:06:59,737 changing mode of /tmp/pip-build-env-q56s62sp/overlay/local/bin/cythonize to 755 2026-03-27T01:06:59,872 changing mode of /tmp/pip-build-env-q56s62sp/overlay/local/bin/wheel to 755 2026-03-27T01:06:59,901 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T01:07:00,281 Installing build dependencies: finished with status 'done' 2026-03-27T01:07:00,288 Getting requirements to build wheel: started 2026-03-27T01:07:00,289 Running command Getting requirements to build wheel 2026-03-27T01:07:01,029 /tmp/pip-build-env-q56s62sp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:07:01,029 !! 2026-03-27T01:07:01,030 ******************************************************************************** 2026-03-27T01:07:01,030 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:07:01,032 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:07:01,032 or your builds will no longer be supported. 2026-03-27T01:07:01,033 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:07:01,034 ******************************************************************************** 2026-03-27T01:07:01,035 !! 2026-03-27T01:07:01,036 corresp(dist, value, root_dir) 2026-03-27T01:07:01,318 running egg_info 2026-03-27T01:07:01,324 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:07:01,342 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:07:01,344 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:07:01,354 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:07:01,355 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:07:01,597 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:01,958 reading manifest template 'MANIFEST.in' 2026-03-27T01:07:02,872 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:07:04,243 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:07:04,685 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:07:10,968 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:07:11,454 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:07:11,908 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:07:12,347 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:07:12,789 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:07:13,251 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:07:13,705 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:07:13,709 no previously-included directories found matching '.git' 2026-03-27T01:07:13,713 no previously-included directories found matching '.github' 2026-03-27T01:07:13,716 no previously-included directories found matching '.claude' 2026-03-27T01:07:13,720 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:07:13,723 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:07:13,727 no previously-included directories found matching '.vscode' 2026-03-27T01:07:13,730 no previously-included directories found matching 'docs' 2026-03-27T01:07:13,733 no previously-included directories found matching 'tests' 2026-03-27T01:07:13,737 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:07:13,740 no previously-included directories found matching 'READMEM' 2026-03-27T01:07:13,744 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:07:13,747 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:07:13,750 no previously-included directories found matching 'tmp' 2026-03-27T01:07:13,754 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:07:13,757 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:07:13,764 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:07:13,772 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:07:13,779 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:07:13,779 adding license file 'LICENSE' 2026-03-27T01:07:13,851 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:13,968 Getting requirements to build wheel: finished with status 'done' 2026-03-27T01:07:13,972 Created temporary directory: /tmp/pip-modern-metadata-6sv7q5el 2026-03-27T01:07:13,974 Preparing metadata (pyproject.toml): started 2026-03-27T01:07:13,976 Running command Preparing metadata (pyproject.toml) 2026-03-27T01:07:14,632 /tmp/pip-build-env-q56s62sp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:07:14,632 !! 2026-03-27T01:07:14,634 ******************************************************************************** 2026-03-27T01:07:14,635 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:07:14,636 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:07:14,636 or your builds will no longer be supported. 2026-03-27T01:07:14,638 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:07:14,638 ******************************************************************************** 2026-03-27T01:07:14,640 !! 2026-03-27T01:07:14,640 corresp(dist, value, root_dir) 2026-03-27T01:07:14,926 running dist_info 2026-03-27T01:07:14,937 creating /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info 2026-03-27T01:07:14,938 writing /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/PKG-INFO 2026-03-27T01:07:14,956 writing dependency_links to /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/dependency_links.txt 2026-03-27T01:07:14,958 writing entry points to /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/entry_points.txt 2026-03-27T01:07:14,967 writing requirements to /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/requires.txt 2026-03-27T01:07:14,968 writing top-level names to /tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/top_level.txt 2026-03-27T01:07:14,970 writing manifest file '/tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:15,174 reading manifest file '/tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:15,176 reading manifest template 'MANIFEST.in' 2026-03-27T01:07:16,069 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:07:17,353 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:07:17,800 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:07:23,035 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:07:23,480 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:07:23,936 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:07:24,403 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:07:24,884 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:07:25,299 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:07:25,713 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:07:25,715 no previously-included directories found matching '.git' 2026-03-27T01:07:25,717 no previously-included directories found matching '.github' 2026-03-27T01:07:25,720 no previously-included directories found matching '.claude' 2026-03-27T01:07:25,722 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:07:25,724 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:07:25,726 no previously-included directories found matching '.vscode' 2026-03-27T01:07:25,729 no previously-included directories found matching 'docs' 2026-03-27T01:07:25,731 no previously-included directories found matching 'tests' 2026-03-27T01:07:25,733 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:07:25,736 no previously-included directories found matching 'READMEM' 2026-03-27T01:07:25,738 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:07:25,740 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:07:25,743 no previously-included directories found matching 'tmp' 2026-03-27T01:07:25,745 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:07:25,747 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:07:25,752 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:07:25,757 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:07:25,762 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:07:25,763 adding license file 'LICENSE' 2026-03-27T01:07:25,818 writing manifest file '/tmp/pip-modern-metadata-6sv7q5el/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:25,821 creating '/tmp/pip-modern-metadata-6sv7q5el/omicverse-2.0.6.dist-info' 2026-03-27T01:07:25,967 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T01:07:25,981 Source in /tmp/pip-wheel-z3w08kz9/omicverse_e4dd65d5ef794f16be28ed5459610c95 has version 2.0.6, which satisfies requirement omicverse==2.0.6 from https://files.pythonhosted.org/packages/01/a3/1e902d50ed0c58a8777951194aedb82d691af5d431809ebfd0e137ac0ef8/omicverse-2.0.6.tar.gz 2026-03-27T01:07:25,982 Removed omicverse==2.0.6 from https://files.pythonhosted.org/packages/01/a3/1e902d50ed0c58a8777951194aedb82d691af5d431809ebfd0e137ac0ef8/omicverse-2.0.6.tar.gz from build tracker '/tmp/pip-build-tracker-0zmr20we' 2026-03-27T01:07:26,006 Created temporary directory: /tmp/pip-unpack-dx5w6dyu 2026-03-27T01:07:26,007 Building wheels for collected packages: omicverse 2026-03-27T01:07:26,025 Created temporary directory: /tmp/pip-wheel-qntv84oj 2026-03-27T01:07:26,026 Destination directory: /tmp/pip-wheel-qntv84oj 2026-03-27T01:07:26,028 Building wheel for omicverse (pyproject.toml): started 2026-03-27T01:07:26,029 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T01:07:26,693 /tmp/pip-build-env-q56s62sp/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:07:26,693 !! 2026-03-27T01:07:26,694 ******************************************************************************** 2026-03-27T01:07:26,695 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:07:26,696 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:07:26,696 or your builds will no longer be supported. 2026-03-27T01:07:26,697 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:07:26,698 ******************************************************************************** 2026-03-27T01:07:26,699 !! 2026-03-27T01:07:26,699 corresp(dist, value, root_dir) 2026-03-27T01:07:26,979 running bdist_wheel 2026-03-27T01:07:26,999 running build 2026-03-27T01:07:27,000 running build_py 2026-03-27T01:07:27,007 creating build/lib/omicverse 2026-03-27T01:07:27,009 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T01:07:27,012 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T01:07:27,016 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T01:07:27,019 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T01:07:27,022 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T01:07:27,026 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T01:07:27,028 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T01:07:27,031 creating build/lib/omicverse/agent 2026-03-27T01:07:27,032 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T01:07:27,035 creating build/lib/omicverse/pp 2026-03-27T01:07:27,036 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,039 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,042 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,045 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,047 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,050 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,053 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,055 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,058 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,061 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,064 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,066 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,069 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,071 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,074 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,078 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,082 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,086 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,089 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,091 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,093 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,097 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,099 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T01:07:27,102 creating build/lib/omicverse/space 2026-03-27T01:07:27,103 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T01:07:27,106 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T01:07:27,109 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T01:07:27,112 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T01:07:27,115 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T01:07:27,117 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T01:07:27,120 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T01:07:27,122 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T01:07:27,124 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T01:07:27,127 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T01:07:27,130 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T01:07:27,133 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T01:07:27,134 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T01:07:27,137 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T01:07:27,140 creating build/lib/omicverse/llm 2026-03-27T01:07:27,141 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,146 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,150 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,154 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,157 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,162 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,164 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,169 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,172 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,174 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,177 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,179 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T01:07:27,182 creating build/lib/omicverse/bulk 2026-03-27T01:07:27,183 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,186 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,203 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,205 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,207 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,209 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,212 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,215 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,218 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,220 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,223 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T01:07:27,225 creating build/lib/omicverse/pl 2026-03-27T01:07:27,226 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,229 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,232 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,238 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,243 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,247 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,249 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,252 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,256 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,258 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,261 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,264 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,266 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,268 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,271 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,274 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,277 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,280 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,284 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,286 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T01:07:27,290 creating build/lib/omicverse/datasets 2026-03-27T01:07:27,292 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T01:07:27,294 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T01:07:27,297 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T01:07:27,300 creating build/lib/omicverse/jarvis 2026-03-27T01:07:27,301 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,303 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,305 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,309 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,312 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,314 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,317 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,319 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,321 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,323 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,325 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T01:07:27,329 creating build/lib/omicverse/fm 2026-03-27T01:07:27,330 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T01:07:27,332 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T01:07:27,335 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T01:07:27,338 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T01:07:27,341 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T01:07:27,344 creating build/lib/omicverse/alignment 2026-03-27T01:07:27,345 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,348 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,350 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,352 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,355 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,357 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,360 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,363 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,365 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T01:07:27,368 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,369 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,371 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,373 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,375 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,378 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,379 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,381 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,384 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,385 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:27,388 creating build/lib/omicverse/popv 2026-03-27T01:07:27,389 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,391 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,394 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,396 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,398 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,401 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T01:07:27,404 creating build/lib/omicverse/mcp 2026-03-27T01:07:27,404 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,407 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,409 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,411 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,415 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,417 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,420 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,422 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,425 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,427 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,429 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,432 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,434 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T01:07:27,437 creating build/lib/omicverse/external 2026-03-27T01:07:27,438 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T01:07:27,441 creating build/lib/omicverse/io 2026-03-27T01:07:27,442 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T01:07:27,444 creating build/lib/omicverse/bulk2single 2026-03-27T01:07:27,445 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,448 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,451 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,454 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,457 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,460 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,462 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,464 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,467 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,470 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T01:07:27,472 creating build/lib/omicverse/biocontext 2026-03-27T01:07:27,473 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T01:07:27,476 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T01:07:27,478 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T01:07:27,482 creating build/lib/omicverse/utils 2026-03-27T01:07:27,483 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,485 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,487 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,490 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,492 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,494 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,496 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,499 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,502 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,505 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,507 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,510 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,513 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,515 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,518 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,520 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,522 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,524 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,527 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,529 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,533 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,535 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,537 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,540 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,542 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,545 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,547 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,551 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,554 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,557 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,560 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,563 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,566 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,569 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T01:07:27,572 creating build/lib/omicverse/data_files 2026-03-27T01:07:27,573 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T01:07:27,577 creating build/lib/omicverse/single 2026-03-27T01:07:27,578 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T01:07:27,581 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T01:07:27,584 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T01:07:27,586 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T01:07:27,589 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T01:07:27,592 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T01:07:27,595 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T01:07:27,597 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T01:07:27,600 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T01:07:27,603 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T01:07:27,606 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T01:07:27,608 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T01:07:27,611 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T01:07:27,615 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T01:07:27,618 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T01:07:27,621 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T01:07:27,624 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T01:07:27,626 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T01:07:27,630 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T01:07:27,636 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T01:07:27,640 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T01:07:27,643 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T01:07:27,646 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T01:07:27,648 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T01:07:27,651 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T01:07:27,654 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T01:07:27,657 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T01:07:27,661 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T01:07:27,663 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T01:07:27,665 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T01:07:27,670 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T01:07:27,674 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T01:07:27,678 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T01:07:27,680 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T01:07:27,683 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T01:07:27,685 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T01:07:27,694 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T01:07:27,697 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T01:07:27,700 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T01:07:27,702 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T01:07:27,705 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T01:07:27,708 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T01:07:27,711 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T01:07:27,714 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T01:07:27,717 creating build/lib/omicverse/pp/experimental 2026-03-27T01:07:27,719 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:07:27,722 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:07:27,725 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:07:27,728 creating build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,729 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,733 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,737 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,740 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,744 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,748 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,751 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,755 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,758 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,763 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,768 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,771 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:07:27,775 creating build/lib/omicverse/llm/CellPLM 2026-03-27T01:07:27,777 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T01:07:27,781 creating build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:27,782 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:27,786 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:27,789 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:27,793 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:27,797 creating build/lib/omicverse/llm/dr 2026-03-27T01:07:27,798 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,802 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,804 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,807 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,810 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,814 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T01:07:27,817 creating build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,819 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,823 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,827 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,830 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,834 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,836 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:07:27,840 creating build/lib/omicverse/llm/utils 2026-03-27T01:07:27,841 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T01:07:27,845 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T01:07:27,848 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T01:07:27,852 creating build/lib/omicverse/llm/domain_research 2026-03-27T01:07:27,854 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T01:07:27,856 creating build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,858 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,860 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,863 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,865 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,867 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,870 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:07:27,872 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,874 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,877 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,879 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,881 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,884 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,887 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,890 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:07:27,892 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:07:27,894 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:07:27,896 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:07:27,899 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,900 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,903 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,905 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,908 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,911 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:27,914 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:07:27,916 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:07:27,918 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:07:27,921 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,922 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,925 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,928 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,931 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,934 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:07:27,937 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:07:27,938 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:07:27,941 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:07:27,944 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:07:27,945 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:07:27,948 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:07:27,950 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:07:27,953 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:07:27,954 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:07:27,956 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:07:27,959 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:07:27,961 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:07:27,962 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:07:27,965 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:07:27,967 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:07:27,969 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:07:27,971 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,972 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,975 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,977 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,979 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,981 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,984 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:07:27,986 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:07:27,987 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:07:27,989 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:07:27,991 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:07:27,994 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:27,996 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:27,998 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,001 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,003 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,005 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,007 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,009 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:28,012 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:07:28,013 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:07:28,016 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:07:28,019 creating build/lib/omicverse/llm/dr/verify 2026-03-27T01:07:28,020 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T01:07:28,023 creating build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,024 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,026 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,028 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,030 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,031 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:07:28,034 creating build/lib/omicverse/llm/dr/write 2026-03-27T01:07:28,034 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:07:28,037 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:07:28,039 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:07:28,042 creating build/lib/omicverse/llm/dr/research 2026-03-27T01:07:28,043 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:07:28,045 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:07:28,047 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:07:28,049 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,050 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,054 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,056 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,058 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,061 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,064 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:07:28,066 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:07:28,068 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:07:28,070 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:07:28,073 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:07:28,075 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,076 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,078 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,081 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,083 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,085 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:07:28,087 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:28,088 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:28,091 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:28,094 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:07:28,095 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:07:28,098 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:07:28,100 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:07:28,101 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:07:28,104 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T01:07:28,105 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T01:07:28,107 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,108 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,111 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,114 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,116 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,118 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:07:28,121 creating build/lib/omicverse/bulk/_alignment 2026-03-27T01:07:28,122 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T01:07:28,125 creating build/lib/omicverse/jarvis/memory 2026-03-27T01:07:28,126 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:07:28,129 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:07:28,132 creating build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,133 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,136 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,138 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,140 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,142 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,144 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,146 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:07:28,148 creating build/lib/omicverse/jarvis/gateway 2026-03-27T01:07:28,149 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:07:28,151 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:07:28,154 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:07:28,157 creating build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,158 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,161 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,164 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,169 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,174 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,177 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,180 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:07:28,182 creating build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,183 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,186 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,188 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,190 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,192 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,195 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,197 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,199 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:07:28,201 creating build/lib/omicverse/popv/hub 2026-03-27T01:07:28,202 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T01:07:28,205 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T01:07:28,207 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T01:07:28,210 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T01:07:28,211 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T01:07:28,214 creating build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,215 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,217 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,220 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,222 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,224 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,226 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,229 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,231 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,233 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,235 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,237 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,240 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:07:28,242 creating build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,243 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,246 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,249 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,251 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,253 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:07:28,256 creating build/lib/omicverse/external/scSLAT 2026-03-27T01:07:28,257 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:07:28,259 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:07:28,261 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:07:28,264 creating build/lib/omicverse/external/gaston 2026-03-27T01:07:28,265 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,267 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,269 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,272 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,274 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,276 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,279 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,281 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,283 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,285 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,287 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,289 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,291 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,293 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,294 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,297 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T01:07:28,299 creating build/lib/omicverse/external/spaceflow 2026-03-27T01:07:28,300 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:07:28,302 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:07:28,305 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:07:28,307 creating build/lib/omicverse/external/scrublet 2026-03-27T01:07:28,308 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:07:28,311 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:07:28,313 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:07:28,316 creating build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,317 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,319 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,321 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,324 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,326 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,328 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:07:28,331 creating build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,333 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,335 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,338 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,340 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,342 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,345 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,346 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,349 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,351 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,354 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,356 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,358 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,360 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,363 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,365 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:07:28,368 creating build/lib/omicverse/external/bin2cell 2026-03-27T01:07:28,369 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:07:28,372 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:07:28,375 creating build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,376 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,377 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,379 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,382 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,384 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,386 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,388 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:07:28,391 creating build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,392 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,394 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,397 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,399 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,402 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,404 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,406 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,409 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,411 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,414 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,416 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:07:28,418 creating build/lib/omicverse/external/GNTD 2026-03-27T01:07:28,420 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:07:28,422 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:07:28,424 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:07:28,426 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:07:28,429 creating build/lib/omicverse/external/harmony 2026-03-27T01:07:28,430 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T01:07:28,433 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T01:07:28,436 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T01:07:28,439 creating build/lib/omicverse/external/mpl_chord 2026-03-27T01:07:28,440 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:07:28,442 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:07:28,444 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:07:28,447 creating build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,448 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,451 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,453 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,456 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,458 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:07:28,461 creating build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,462 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,464 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,465 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,468 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,471 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,473 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,476 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,477 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,479 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,481 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,483 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,485 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,488 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:07:28,490 creating build/lib/omicverse/external/spaco 2026-03-27T01:07:28,491 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,493 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,496 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,498 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,500 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,502 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,504 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,507 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,509 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T01:07:28,512 creating build/lib/omicverse/external/cellanova 2026-03-27T01:07:28,513 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:07:28,516 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:07:28,518 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:07:28,520 creating build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,521 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,524 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,527 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,530 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,532 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,535 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,537 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,539 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,542 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:07:28,544 creating build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,545 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,548 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,550 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,553 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,555 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,557 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,561 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,563 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:07:28,567 creating build/lib/omicverse/external/tosica 2026-03-27T01:07:28,568 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T01:07:28,572 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T01:07:28,575 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T01:07:28,578 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T01:07:28,581 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T01:07:28,584 creating build/lib/omicverse/external/somde 2026-03-27T01:07:28,586 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T01:07:28,589 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T01:07:28,592 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T01:07:28,595 creating build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,596 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,600 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,603 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,606 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,609 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:28,612 creating build/lib/omicverse/external/cnmf 2026-03-27T01:07:28,613 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:07:28,618 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:07:28,623 creating build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,624 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,627 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,629 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,632 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,636 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,638 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,641 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,644 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,647 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,650 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,652 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,655 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:07:28,659 creating build/lib/omicverse/external/scanorama 2026-03-27T01:07:28,660 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:07:28,663 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:07:28,665 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:07:28,667 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,668 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,670 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,672 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,674 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,676 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:07:28,678 creating build/lib/omicverse/external/scMulan 2026-03-27T01:07:28,679 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:07:28,682 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:07:28,684 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:07:28,687 creating build/lib/omicverse/external/tape 2026-03-27T01:07:28,688 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,690 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,692 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,694 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,697 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,699 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T01:07:28,701 creating build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,702 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,704 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,706 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,708 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,710 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,712 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,714 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:07:28,716 creating build/lib/omicverse/external/cytotrace2 2026-03-27T01:07:28,717 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:07:28,719 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:07:28,721 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:07:28,724 creating build/lib/omicverse/external/VIA 2026-03-27T01:07:28,725 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,730 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,732 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,736 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,741 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,744 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,750 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T01:07:28,752 creating build/lib/omicverse/external/nocd 2026-03-27T01:07:28,753 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,756 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,758 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,760 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,763 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,765 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T01:07:28,767 creating build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,769 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,771 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,774 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,777 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,779 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,782 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:28,784 creating build/lib/omicverse/external/BINARY 2026-03-27T01:07:28,785 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:07:28,788 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:07:28,790 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:07:28,793 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:07:28,796 creating build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,797 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,800 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,803 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,806 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,809 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,812 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,815 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,818 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,820 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,823 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:07:28,826 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,827 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,830 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,832 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,834 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,837 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:07:28,839 creating build/lib/omicverse/external/datacollect 2026-03-27T01:07:28,840 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:07:28,844 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:07:28,847 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:07:28,850 creating build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,851 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,854 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,857 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,860 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,862 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,865 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,869 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,872 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,875 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:07:28,878 creating build/lib/omicverse/external/topact 2026-03-27T01:07:28,879 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,882 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,884 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,886 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,889 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,893 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,895 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,898 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T01:07:28,900 creating build/lib/omicverse/external/bulk2single 2026-03-27T01:07:28,901 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T01:07:28,904 creating build/lib/omicverse/external/PROST 2026-03-27T01:07:28,905 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,908 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,911 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,914 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,916 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,919 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,922 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T01:07:28,925 creating build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,926 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,929 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,931 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,933 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,936 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,938 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,940 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,942 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,945 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,947 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,949 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,952 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,955 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,958 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,960 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,962 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,965 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,968 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,970 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,972 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,975 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:07:28,977 creating build/lib/omicverse/external/mofapy2 2026-03-27T01:07:28,979 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:07:28,981 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:07:28,983 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:07:28,986 creating build/lib/omicverse/external/flowsig 2026-03-27T01:07:28,987 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T01:07:28,990 creating build/lib/omicverse/external/STT 2026-03-27T01:07:28,991 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T01:07:28,994 creating build/lib/omicverse/external/commot 2026-03-27T01:07:28,995 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T01:07:28,998 creating build/lib/omicverse/external/CEFCON 2026-03-27T01:07:28,999 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,002 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,005 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,008 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,011 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,013 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,016 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,019 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,022 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:07:29,025 creating build/lib/omicverse/external/scdiffusion 2026-03-27T01:07:29,026 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:07:29,029 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:07:29,031 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:07:29,033 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:07:29,036 creating build/lib/omicverse/external/palantir 2026-03-27T01:07:29,038 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,041 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,044 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,046 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,049 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,054 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,056 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,058 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,060 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,063 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,065 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T01:07:29,067 creating build/lib/omicverse/external/CAST 2026-03-27T01:07:29,068 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,071 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,073 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,076 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,078 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,081 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,083 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T01:07:29,087 creating build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,088 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,090 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,092 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,095 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,097 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,099 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:07:29,101 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,102 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,105 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,111 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,113 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,115 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:07:29,118 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,119 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,121 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,123 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,125 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,127 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,130 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,132 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,134 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:07:29,136 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:07:29,137 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:07:29,140 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:07:29,142 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:07:29,145 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:29,146 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:29,148 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:29,150 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:29,151 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:29,154 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:29,156 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:29,158 creating build/lib/omicverse/external/space/cell2location 2026-03-27T01:07:29,160 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:07:29,162 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:07:29,165 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:29,166 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:29,169 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:29,171 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:29,172 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:29,174 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:29,176 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:29,178 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:29,181 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:07:29,182 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:07:29,185 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:07:29,187 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:07:29,189 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,190 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,193 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,195 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,197 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,200 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:29,202 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,203 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,206 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,209 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,212 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,215 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:29,217 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:07:29,218 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:07:29,221 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:07:29,223 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:07:29,225 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,226 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,229 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,231 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,233 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,236 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,238 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,240 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,242 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:07:29,244 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:29,245 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:29,248 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:29,251 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:29,253 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,254 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,256 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,259 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,262 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,264 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:29,267 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:29,268 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:29,271 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:29,273 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:29,276 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:29,278 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:29,281 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:29,284 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:29,287 creating build/lib/omicverse/external/spaco/external 2026-03-27T01:07:29,288 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:07:29,291 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:07:29,294 creating build/lib/omicverse/external/scMulan/model 2026-03-27T01:07:29,296 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:07:29,299 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:07:29,303 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T01:07:29,304 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:07:29,307 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:07:29,310 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:29,312 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:29,316 creating build/lib/omicverse/external/nocd/nn 2026-03-27T01:07:29,317 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:07:29,320 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:07:29,322 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:07:29,324 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:07:29,327 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T01:07:29,328 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:07:29,330 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:07:29,332 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:07:29,335 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,336 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,338 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,341 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,343 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,346 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,348 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,351 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,353 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,356 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,358 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,361 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,364 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,367 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,370 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,373 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,376 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,378 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,381 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,384 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,387 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,390 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,392 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:07:29,397 creating build/lib/omicverse/external/datacollect/config 2026-03-27T01:07:29,398 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:07:29,401 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:07:29,403 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,405 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,408 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,410 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,413 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,416 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,419 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:07:29,423 creating build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,425 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,428 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,430 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,433 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,436 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,439 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,442 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,445 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,447 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,450 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,453 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,456 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,459 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,462 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,465 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,467 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,469 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,471 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,473 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,476 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,478 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,480 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,483 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,485 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,488 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,490 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,492 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,495 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,497 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,500 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,502 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,505 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,507 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,509 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:07:29,512 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,513 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,515 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,518 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,520 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,523 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,525 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:07:29,528 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,529 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,531 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,533 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,536 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,538 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,540 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,542 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:29,544 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:29,545 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:29,548 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:29,550 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:29,552 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:29,555 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,556 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,559 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,561 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,564 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,566 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,568 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,571 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,574 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,576 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:29,579 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,580 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,583 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,586 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,588 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,591 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,594 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,596 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,599 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:29,601 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,602 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,604 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,607 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,608 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,611 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:29,614 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,615 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,617 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,620 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,624 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,627 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,629 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,631 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,634 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,637 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,640 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:29,643 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,644 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,646 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,648 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,651 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,654 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,656 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,658 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,660 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,662 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,665 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,667 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,669 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:29,672 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:07:29,673 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:07:29,676 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:07:29,679 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:07:29,682 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,683 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,685 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,688 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,690 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,692 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:07:29,695 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:07:29,696 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:07:29,699 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:07:29,702 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:07:29,705 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,706 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,709 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,712 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,715 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,718 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,723 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,726 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,729 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:07:29,732 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,733 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,736 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,738 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,741 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,744 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:07:29,746 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T01:07:29,748 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:07:29,751 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:07:29,753 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,754 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,758 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,760 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,763 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,765 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,767 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:07:29,769 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:07:29,770 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:07:29,772 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:07:29,775 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,776 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,778 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,781 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,783 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,785 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,788 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,790 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,793 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,795 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,797 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,800 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,803 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,805 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,808 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,811 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,813 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,816 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,818 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:29,821 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,822 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,824 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,826 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,829 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,830 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,832 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,834 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,836 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,839 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,842 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,844 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:29,847 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T01:07:29,848 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:07:29,851 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:07:29,854 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:07:29,856 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:07:29,858 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:07:29,859 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:07:29,862 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:07:29,864 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:07:29,865 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:07:29,868 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:07:29,871 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,872 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,875 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,878 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,880 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,882 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,885 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:29,887 creating build/lib/omicverse/external/STT/pl 2026-03-27T01:07:29,888 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:07:29,891 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:07:29,894 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:07:29,896 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:07:29,899 creating build/lib/omicverse/external/STT/tl 2026-03-27T01:07:29,900 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:07:29,902 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:07:29,905 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:07:29,907 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:07:29,909 creating build/lib/omicverse/external/commot/tools 2026-03-27T01:07:29,910 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:07:29,913 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:07:29,916 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:07:29,919 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,920 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,923 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,925 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,927 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,930 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:29,933 creating build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,934 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,937 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,939 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,941 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,943 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:07:29,946 creating build/lib/omicverse/external/commot/plotting 2026-03-27T01:07:29,947 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:07:29,949 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:07:29,951 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:07:29,955 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:07:29,956 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:07:29,958 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:07:29,961 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:07:29,964 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:29,965 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:29,968 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:07:29,969 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:07:29,971 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:07:29,973 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:07:29,976 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,976 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,979 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,981 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,983 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,985 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,988 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,990 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,992 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,994 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,996 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:29,998 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,000 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,002 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,005 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,007 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,009 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,011 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,013 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:30,017 creating build/lib/omicverse/external/CAST/model 2026-03-27T01:07:30,018 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:07:30,020 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:07:30,022 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:07:30,024 creating build/lib/omicverse/external/single/arboreto 2026-03-27T01:07:30,025 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:07:30,028 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:07:30,030 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:07:30,032 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:07:30,034 creating build/lib/omicverse/io/bulk 2026-03-27T01:07:30,034 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T01:07:30,037 creating build/lib/omicverse/io/spatial 2026-03-27T01:07:30,038 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T01:07:30,040 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T01:07:30,043 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T01:07:30,045 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T01:07:30,048 creating build/lib/omicverse/io/general 2026-03-27T01:07:30,049 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T01:07:30,050 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T01:07:30,052 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T01:07:30,054 creating build/lib/omicverse/io/single 2026-03-27T01:07:30,055 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T01:07:30,057 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T01:07:30,060 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T01:07:30,063 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T01:07:30,066 creating build/lib/omicverse/utils/harness 2026-03-27T01:07:30,067 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,069 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,071 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,074 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,077 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,080 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,083 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T01:07:30,085 creating build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,086 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,089 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,092 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,095 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,098 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,100 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,102 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,104 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,107 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:30,109 creating build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,110 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,114 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,116 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,118 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,121 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,124 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,126 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,128 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,131 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,133 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,136 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,139 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,141 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:07:30,144 creating build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,145 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,147 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,149 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,152 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,155 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,157 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,160 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,163 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,166 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,169 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,171 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,174 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,177 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,182 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,189 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:07:30,193 creating build/lib/omicverse/single/templates 2026-03-27T01:07:30,194 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T01:07:30,197 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T01:07:30,203 running egg_info 2026-03-27T01:07:30,220 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:07:30,248 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:07:30,250 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:07:30,265 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:07:30,266 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:07:30,462 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:30,525 reading manifest template 'MANIFEST.in' 2026-03-27T01:07:31,461 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:07:32,849 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:07:33,328 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:07:37,494 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:07:38,062 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:07:38,514 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:07:38,975 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:07:39,445 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:07:39,897 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:07:40,356 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:07:40,360 no previously-included directories found matching '.git' 2026-03-27T01:07:40,363 no previously-included directories found matching '.github' 2026-03-27T01:07:40,366 no previously-included directories found matching '.claude' 2026-03-27T01:07:40,369 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:07:40,373 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:07:40,376 no previously-included directories found matching '.vscode' 2026-03-27T01:07:40,379 no previously-included directories found matching 'docs' 2026-03-27T01:07:40,382 no previously-included directories found matching 'tests' 2026-03-27T01:07:40,385 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:07:40,389 no previously-included directories found matching 'READMEM' 2026-03-27T01:07:40,392 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:07:40,395 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:07:40,399 no previously-included directories found matching 'tmp' 2026-03-27T01:07:40,402 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:07:40,405 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:07:40,411 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:07:40,419 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:07:40,425 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:07:40,426 adding license file 'LICENSE' 2026-03-27T01:07:40,495 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:07:40,595 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T01:07:40,597 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T01:07:40,599 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T01:07:40,602 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T01:07:40,605 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:07:40,607 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T01:07:40,609 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T01:07:40,614 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T01:07:40,617 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T01:07:40,689 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T01:07:40,692 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:40,698 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:40,701 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:40,704 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:07:40,706 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:07:40,707 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:07:40,709 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:40,735 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:40,750 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T01:07:40,752 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:07:40,754 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:07:40,757 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:07:40,759 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:07:40,762 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:41,865 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:41,894 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,895 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,898 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,901 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,903 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,906 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,909 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,912 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,914 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,918 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,920 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,923 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,925 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:07:41,929 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:41,935 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:41,936 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:42,040 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:42,044 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:42,050 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:42,051 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:42,059 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:42,073 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:42,083 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:42,084 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:42,127 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:42,170 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:42,205 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:42,207 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:42,211 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:42,214 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:42,215 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:42,219 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:42,223 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:42,229 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:42,232 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:42,234 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:42,237 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:07:42,239 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T01:07:42,242 creating build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,243 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,246 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,249 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,309 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,328 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:07:42,339 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T01:07:42,343 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T01:07:42,345 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T01:07:42,348 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T01:07:42,351 creating build/lib/omicverse/single/templates/img 2026-03-27T01:07:42,352 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T01:07:42,354 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:07:42,358 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:07:42,362 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:07:42,470 installing to build/bdist.linux-armv7l/wheel 2026-03-27T01:07:42,470 running install 2026-03-27T01:07:42,495 running install_lib 2026-03-27T01:07:42,501 creating build/bdist.linux-armv7l/wheel 2026-03-27T01:07:42,504 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T01:07:42,506 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T01:07:42,507 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T01:07:42,511 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T01:07:42,512 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,517 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,520 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,523 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,526 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,529 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,532 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,534 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,537 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,540 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,543 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,546 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,549 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,552 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,555 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,559 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,563 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T01:07:42,565 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:07:42,568 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:07:42,570 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:07:42,573 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,578 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,581 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,584 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,586 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,589 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,592 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:07:42,594 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T01:07:42,596 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,599 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,602 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,605 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,608 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,610 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,613 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,616 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,619 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,623 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,627 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,630 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,632 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,635 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:07:42,638 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T01:07:42,639 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,645 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T01:07:42,646 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,650 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,656 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,660 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,661 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,664 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,666 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,668 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,671 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,673 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,675 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:07:42,677 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,680 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,684 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,686 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,688 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,690 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,693 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,697 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,699 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:07:42,701 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,705 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,708 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,728 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T01:07:42,730 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T01:07:42,731 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:07:42,733 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:07:42,736 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,737 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,739 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,741 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,743 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,745 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:07:42,748 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T01:07:42,749 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:07:42,751 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:07:42,753 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,754 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,757 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,759 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,762 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,764 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:07:42,766 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T01:07:42,767 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:07:42,769 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:07:42,771 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T01:07:42,772 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:07:42,775 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:07:42,776 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:07:42,779 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T01:07:42,780 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:07:42,782 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:07:42,784 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:07:42,786 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T01:07:42,787 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:07:42,790 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:07:42,792 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:07:42,794 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:07:42,796 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,797 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,800 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,802 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,804 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,806 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,808 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:07:42,811 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T01:07:42,812 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:07:42,814 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:07:42,816 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:07:42,818 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T01:07:42,820 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T01:07:42,821 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,823 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,825 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,827 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,839 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,842 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T01:07:42,843 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T01:07:42,846 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,847 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,849 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,852 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,854 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,856 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,858 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,860 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:07:42,862 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,865 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,867 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:07:42,869 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T01:07:42,870 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,873 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T01:07:42,874 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:07:42,877 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:07:42,879 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,881 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,883 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,885 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T01:07:42,886 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T01:07:42,889 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T01:07:42,890 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:07:42,892 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:07:42,894 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:07:42,895 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:07:42,897 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:07:42,899 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T01:07:42,900 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:07:42,902 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:07:42,904 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:07:42,906 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,909 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T01:07:42,910 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:07:42,912 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:07:42,914 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:07:42,916 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:07:42,917 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,921 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,924 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:42,929 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T01:07:42,931 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T01:07:42,932 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,935 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,937 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,938 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,941 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,944 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:07:42,946 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:42,949 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T01:07:42,950 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:07:42,952 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:07:42,955 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:07:42,957 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:42,959 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:42,961 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,962 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,964 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,966 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,968 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,970 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:07:42,972 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:42,973 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:42,976 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:43,036 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:43,068 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:07:43,070 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T01:07:43,071 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:07:43,074 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:07:43,076 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:43,078 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:43,080 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:07:43,082 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:43,085 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T01:07:43,086 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:07:43,088 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:07:43,091 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:07:43,093 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:43,096 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T01:07:43,097 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T01:07:43,098 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T01:07:43,101 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T01:07:43,102 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T01:07:43,104 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T01:07:43,105 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:43,108 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T01:07:43,109 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,112 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,113 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,116 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,118 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,120 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,122 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:07:43,125 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,126 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,128 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,130 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,133 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:07:43,134 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:43,136 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:07:43,139 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T01:07:43,140 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,143 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,154 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,157 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,159 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,161 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,163 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,166 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,169 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,172 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,176 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T01:07:43,177 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T01:07:43,179 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:07:43,182 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T01:07:43,184 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,187 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,191 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,199 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,204 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,208 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,211 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,214 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,218 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,221 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,223 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,227 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,230 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,232 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,235 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,238 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,242 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,246 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,251 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,255 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:07:43,261 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:43,264 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T01:07:43,266 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:07:43,269 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:07:43,274 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:07:43,276 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:43,281 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T01:07:43,282 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,285 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,288 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T01:07:43,290 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:07:43,293 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:07:43,295 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,298 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,301 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,305 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,308 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,311 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,314 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,316 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,319 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T01:07:43,321 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,324 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,326 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,328 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,330 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,333 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,335 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:07:43,338 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T01:07:43,339 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:07:43,342 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:07:43,345 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:07:43,347 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,350 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,354 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T01:07:43,355 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,359 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,362 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,366 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,370 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,373 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,377 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:07:43,378 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,380 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,383 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:07:43,386 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T01:07:43,387 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:07:43,390 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:07:43,393 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T01:07:43,394 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,396 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,398 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,400 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,402 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,404 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,406 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,408 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:07:43,410 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:07:43,413 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:07:43,416 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:07:43,418 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T01:07:43,419 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,422 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,424 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,426 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,429 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,431 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,434 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,436 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,439 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:07:43,441 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T01:07:43,442 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,444 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,446 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,448 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,451 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,453 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,454 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,457 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,458 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,460 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:07:43,462 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:43,464 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:43,467 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:43,470 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T01:07:43,471 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,473 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,476 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T01:07:43,477 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:07:43,480 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:07:43,482 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:07:43,484 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:07:43,486 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:07:43,487 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,489 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,492 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,495 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T01:07:43,496 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,498 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,500 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,502 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,504 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,506 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,508 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,510 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,512 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,514 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,517 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,519 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:07:43,521 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:07:43,523 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T01:07:43,524 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,526 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,528 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,530 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,534 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,537 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T01:07:43,538 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:07:43,540 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:07:43,543 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:07:43,545 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:07:43,547 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:07:43,549 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,552 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,554 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,557 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,559 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,561 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,564 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,567 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:07:43,570 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T01:07:43,572 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T01:07:43,573 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T01:07:43,575 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,577 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,579 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,581 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,584 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:43,585 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:43,587 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:07:43,589 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:43,590 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:43,593 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:43,595 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:07:43,596 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,599 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,601 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,602 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:07:43,605 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T01:07:43,606 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:07:43,609 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:07:43,610 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:07:43,612 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:07:43,614 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:07:43,616 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:07:43,618 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T01:07:43,619 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,622 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,623 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,626 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,627 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,630 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,632 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,634 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,636 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,637 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,639 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,641 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,643 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,645 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,647 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,649 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:07:43,651 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T01:07:43,652 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:07:43,654 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:07:43,656 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:07:43,658 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T01:07:43,659 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:07:43,662 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:07:43,665 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:07:43,667 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T01:07:43,668 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,670 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,672 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,675 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,677 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,679 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:07:43,682 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T01:07:43,683 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T01:07:43,685 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:43,686 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:43,689 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:07:43,691 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:43,692 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:43,695 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:43,697 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:43,699 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:07:43,701 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T01:07:43,703 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:07:43,705 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:07:43,707 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:07:43,710 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,711 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,713 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,715 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,717 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,720 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:07:43,722 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T01:07:43,723 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,727 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:43,728 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:43,731 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:43,734 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:07:43,736 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,739 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,740 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,742 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,745 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,747 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,749 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:07:43,751 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,753 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,756 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:43,757 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:43,760 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:43,762 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:07:43,765 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:43,766 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:43,768 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:43,771 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:07:43,772 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,774 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:07:43,777 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T01:07:43,778 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:07:43,780 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:07:43,782 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:07:43,784 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,785 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,788 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,790 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,792 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,794 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,797 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,799 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,801 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:07:43,803 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:07:43,805 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:07:43,808 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T01:07:43,809 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,812 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,814 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,817 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,819 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,821 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,823 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,825 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,828 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,830 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,832 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,834 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,836 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,839 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,841 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:07:43,843 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T01:07:43,844 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:07:43,848 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:07:43,850 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T01:07:43,851 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,853 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,855 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,858 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,860 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,862 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,864 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:07:43,866 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T01:07:43,867 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,869 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,872 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,874 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,876 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,878 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,880 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,883 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,885 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,888 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,890 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:07:43,892 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T01:07:43,894 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:07:43,895 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:07:43,898 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:07:43,900 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:07:43,902 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T01:07:43,903 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:07:43,906 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:07:43,909 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:07:43,911 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T01:07:43,912 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:07:43,914 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:07:43,916 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:07:43,919 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T01:07:43,921 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:07:43,923 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:07:43,925 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:07:43,928 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:07:43,930 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:07:43,932 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T01:07:43,933 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,935 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,937 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,939 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,942 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,944 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,946 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,948 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,950 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,952 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,954 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,956 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,959 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:07:43,961 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T01:07:43,962 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,964 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,967 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,969 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T01:07:43,970 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:07:43,973 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:07:43,974 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,977 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,979 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,980 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,983 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,985 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:07:43,988 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T01:07:43,989 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:07:43,991 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:07:43,993 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:07:43,995 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T01:07:43,996 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:43,999 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,002 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,005 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,007 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,009 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,012 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,014 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,016 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:07:44,019 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T01:07:44,020 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,022 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,025 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,027 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,029 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,031 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,034 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,036 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:07:44,039 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T01:07:44,040 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:07:44,043 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:07:44,045 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:07:44,047 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:07:44,050 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:07:44,052 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T01:07:44,053 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:07:44,055 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:07:44,058 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:07:44,060 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T01:07:44,061 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,063 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,065 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,068 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,070 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,072 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:07:44,074 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T01:07:44,075 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:07:44,079 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:07:44,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T01:07:44,083 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,085 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,087 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,089 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,092 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,094 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,095 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,097 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,100 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,103 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,104 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,107 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:07:44,110 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T01:07:44,111 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:07:44,114 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:07:44,116 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:07:44,118 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T01:07:44,119 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:07:44,121 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:07:44,122 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:07:44,125 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:07:44,126 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:07:44,129 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T01:07:44,130 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T01:07:44,132 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:07:44,134 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:07:44,136 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:07:44,139 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:07:44,142 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T01:07:44,143 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:07:44,145 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:07:44,147 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T01:07:44,148 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:44,150 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:44,177 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:44,852 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:07:44,855 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:07:44,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T01:07:44,858 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,860 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,863 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,865 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,867 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,870 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:07:44,872 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T01:07:44,873 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,875 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,876 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,878 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,880 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,882 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,884 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:07:44,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T01:07:44,887 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:07:44,889 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:07:44,891 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:07:44,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T01:07:44,895 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,900 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,902 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,906 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,912 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,915 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,922 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:07:44,925 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T01:07:44,926 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,928 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,931 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T01:07:44,932 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:07:44,934 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:07:44,937 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:07:44,939 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:07:44,942 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T01:07:44,943 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:07:44,945 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:07:44,946 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:07:44,948 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,950 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,952 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,954 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:07:44,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T01:07:44,957 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,959 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,961 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,964 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,967 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,968 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,970 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:07:44,972 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T01:07:44,974 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:07:44,975 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:07:44,978 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:07:44,980 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:07:44,982 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T01:07:44,983 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,986 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,989 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,991 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,993 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,996 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:44,998 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:45,000 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:45,002 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:45,005 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:07:45,007 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,008 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,010 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,012 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,014 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,016 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:07:45,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T01:07:45,019 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:07:45,022 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T01:07:45,023 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,026 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,029 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,032 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,034 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,036 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,038 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,041 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,043 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,045 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,048 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,050 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,053 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,055 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,058 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,060 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,062 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,064 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,066 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,068 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,071 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,072 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:07:45,075 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T01:07:45,076 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,079 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,081 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,084 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,086 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,089 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,091 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,094 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,096 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,098 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,100 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,103 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:07:45,105 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:07:45,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T01:07:45,109 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:07:45,111 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:07:45,112 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:07:45,115 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T01:07:45,116 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,118 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,120 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,123 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,125 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,127 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:07:45,130 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T01:07:45,131 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,133 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,136 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,138 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,141 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,143 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,145 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,147 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,149 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,152 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,154 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,158 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,159 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,161 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,163 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,166 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,168 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,170 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:07:45,172 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,174 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,177 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,178 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,180 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,182 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,184 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,187 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,189 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,191 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:07:45,193 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,195 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,197 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,200 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T01:07:45,201 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:07:45,204 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:07:45,206 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:07:45,208 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:07:45,210 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,213 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,215 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,217 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,219 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,222 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,224 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,226 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,229 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,231 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,233 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,235 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:07:45,237 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,239 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,242 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,245 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,247 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,249 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,252 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,254 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,256 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,259 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,261 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,263 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,266 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,268 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,270 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,273 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,274 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,276 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,278 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,280 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,283 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,285 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,287 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,289 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:07:45,291 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:07:45,294 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:07:45,296 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:07:45,299 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T01:07:45,300 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,303 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,305 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,307 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,310 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,312 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,315 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,318 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,320 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:07:45,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T01:07:45,324 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,326 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,328 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,329 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,332 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,335 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,338 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,339 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:07:45,342 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T01:07:45,343 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,344 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,347 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,349 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,351 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,353 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:07:45,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,357 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,359 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,362 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,364 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,370 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,372 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,375 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,376 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,380 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,383 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,386 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:07:45,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,389 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,392 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,394 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,396 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,398 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,400 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,403 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,405 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:45,408 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:45,414 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:45,504 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:07:45,509 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,513 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,515 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,518 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:07:45,521 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T01:07:45,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T01:07:45,525 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,529 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,532 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,535 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,538 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,542 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,545 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:07:45,549 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T01:07:45,550 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,553 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,556 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,558 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,561 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,565 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T01:07:45,567 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:07:45,570 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:07:45,573 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:07:45,576 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,578 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,581 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,584 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,587 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T01:07:45,589 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:07:45,591 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:07:45,593 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:07:45,596 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:07:45,598 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:07:45,601 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,604 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,608 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,611 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T01:07:45,612 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:07:45,614 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:07:45,617 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:07:45,618 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,620 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,622 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,624 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,627 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T01:07:45,628 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,630 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,633 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,635 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,638 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,641 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,643 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,646 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:07:45,648 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,650 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,652 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,654 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,656 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:07:45,658 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T01:07:45,660 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T01:07:45,661 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:07:45,663 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:07:45,666 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,667 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,669 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,672 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,674 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,677 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,679 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,681 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,683 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,686 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,688 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,690 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,693 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,695 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,697 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,700 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,702 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,705 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,707 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:07:45,709 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,710 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,712 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,714 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,716 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,718 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,720 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,722 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,723 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,726 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,729 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,730 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:07:45,732 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:07:45,734 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:07:45,736 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:07:45,738 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T01:07:45,740 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:45,741 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:45,748 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:45,755 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:45,756 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:45,777 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:45,799 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:07:45,820 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:07:45,827 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:07:45,831 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:07:45,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,834 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,837 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,839 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,842 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,844 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,846 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:07:45,848 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T01:07:45,849 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:07:45,851 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:07:45,853 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:07:45,854 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:07:45,856 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:07:45,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T01:07:45,860 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T01:07:45,861 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:07:45,863 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:07:45,865 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:07:45,867 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:07:45,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T01:07:45,870 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:07:45,872 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:07:45,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T01:07:45,875 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:07:45,878 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:07:45,880 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,881 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,884 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,886 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,889 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,890 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,893 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:07:45,894 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T01:07:45,897 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T01:07:45,898 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T01:07:45,899 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:07:45,902 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:07:45,904 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:07:45,906 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:07:45,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T01:07:45,910 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:07:45,912 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:07:45,915 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:07:45,916 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:07:45,918 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T01:07:45,920 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T01:07:45,922 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T01:07:45,923 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:07:45,927 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:07:45,930 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:07:45,932 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,933 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,935 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,938 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,940 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,942 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:07:45,944 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T01:07:45,945 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:07:45,948 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:07:45,951 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:07:45,952 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:07:45,954 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:07:45,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T01:07:45,957 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:07:45,960 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:07:45,962 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:07:45,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T01:07:45,967 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T01:07:45,968 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T01:07:45,970 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:45,971 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:45,976 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:45,979 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:07:45,984 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:45,985 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:45,988 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:07:45,991 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:07:45,994 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:07:45,996 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:07:45,998 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T01:07:46,000 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T01:07:46,001 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,004 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,006 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,008 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,012 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T01:07:46,013 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:07:46,015 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:07:46,018 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:07:46,020 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:07:46,023 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:07:46,024 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,026 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,029 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,031 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,033 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:07:46,036 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T01:07:46,037 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:07:46,039 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:07:46,041 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:07:46,043 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T01:07:46,044 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:07:46,047 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:07:46,049 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:07:46,051 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,052 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,054 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,057 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,059 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,062 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,064 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,066 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,069 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,071 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,073 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,075 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,077 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,079 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,081 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,083 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,086 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,087 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,089 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:07:46,092 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:07:46,095 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T01:07:46,096 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,099 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,101 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,103 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,106 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,109 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,111 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,113 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,115 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,118 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,119 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:07:46,122 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T01:07:46,123 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,125 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,128 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T01:07:46,129 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:07:46,131 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:07:46,133 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:07:46,135 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,137 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,140 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,142 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,144 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:07:46,146 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T01:07:46,148 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T01:07:46,149 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:07:46,152 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:07:46,155 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:07:46,156 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:07:46,158 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T01:07:46,159 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,161 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,164 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,166 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,169 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,170 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:07:46,172 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T01:07:46,175 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T01:07:46,176 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:07:46,178 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:07:46,184 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:07:46,186 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:07:46,188 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:07:46,190 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T01:07:46,192 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T01:07:46,193 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T01:07:46,195 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T01:07:46,196 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:07:46,199 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:07:46,201 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:07:46,203 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:07:46,205 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T01:07:46,206 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:07:46,208 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:07:46,210 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:07:46,212 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T01:07:46,213 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:07:46,215 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:07:46,217 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:07:46,220 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:07:46,221 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T01:07:46,223 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:46,226 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T01:07:46,227 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,229 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,232 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,235 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,238 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,240 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,243 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,244 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,247 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,249 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:07:46,252 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T01:07:46,253 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:07:46,256 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:07:46,258 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:07:46,261 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T01:07:46,262 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,265 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,266 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,269 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,270 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,273 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,274 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,277 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,280 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,282 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,284 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,287 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,290 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,292 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,296 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,300 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T01:07:46,302 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,305 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,308 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,311 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,314 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,318 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,321 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:07:46,323 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,326 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T01:07:46,327 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,331 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,335 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,338 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,341 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,344 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,347 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,349 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,353 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,356 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:07:46,358 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,361 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,364 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,368 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,372 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,376 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,379 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,381 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,384 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,387 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,390 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,395 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,397 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,400 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,403 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T01:07:46,404 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,407 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,410 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,412 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,415 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,417 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,420 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,422 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,425 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,427 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,430 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,432 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,435 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:07:46,437 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,440 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,442 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,445 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:07:46,448 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T01:07:46,449 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,451 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,454 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,456 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,458 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,460 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,463 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,465 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,468 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,471 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,473 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,476 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,478 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,481 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,484 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:07:46,487 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T01:07:46,488 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:07:46,490 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:07:46,495 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:07:46,497 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T01:07:46,499 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:07:46,518 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:07:46,532 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:07:46,535 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:07:46,554 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:07:46,556 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:07:46,637 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:07:46,640 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T01:07:46,641 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,643 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,646 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,648 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,650 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,653 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,655 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,657 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,660 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,662 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,665 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,667 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,670 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,674 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,676 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,679 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,682 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,684 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,687 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,692 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,695 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,698 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,700 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,703 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,706 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,709 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,711 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,714 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,717 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,719 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,723 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,726 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,729 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,732 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,734 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T01:07:46,735 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,738 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,739 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,742 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T01:07:46,743 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:07:46,745 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:07:46,748 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:07:46,751 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:07:46,754 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,756 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,758 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:07:46,760 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,762 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,770 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,773 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,775 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,778 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,780 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,782 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,785 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,787 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,789 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:07:46,792 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:07:46,794 running install_egg_info 2026-03-27T01:07:46,800 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.6-py3.11.egg-info 2026-03-27T01:07:46,813 running install_scripts 2026-03-27T01:07:46,826 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.6.dist-info/WHEEL 2026-03-27T01:07:46,829 creating '/tmp/pip-wheel-qntv84oj/.tmp-1btntus6/omicverse-2.0.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T01:07:46,832 adding 'omicverse/__init__.py' 2026-03-27T01:07:46,834 adding 'omicverse/_lazy_loader.py' 2026-03-27T01:07:46,836 adding 'omicverse/_monitor.py' 2026-03-27T01:07:46,842 adding 'omicverse/_registry.py' 2026-03-27T01:07:46,847 adding 'omicverse/_settings.py' 2026-03-27T01:07:46,850 adding 'omicverse/claw.py' 2026-03-27T01:07:46,851 adding 'omicverse/cli.py' 2026-03-27T01:07:46,853 adding 'omicverse/agent/__init__.py' 2026-03-27T01:07:46,856 adding 'omicverse/alignment/STAR.py' 2026-03-27T01:07:46,857 adding 'omicverse/alignment/__init__.py' 2026-03-27T01:07:46,859 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T01:07:46,861 adding 'omicverse/alignment/fastp.py' 2026-03-27T01:07:46,863 adding 'omicverse/alignment/featureCount.py' 2026-03-27T01:07:46,865 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T01:07:46,869 adding 'omicverse/alignment/kb_api.py' 2026-03-27T01:07:46,871 adding 'omicverse/alignment/pipeline.py' 2026-03-27T01:07:46,873 adding 'omicverse/alignment/prefetch.py' 2026-03-27T01:07:46,875 adding 'omicverse/biocontext/__init__.py' 2026-03-27T01:07:46,876 adding 'omicverse/biocontext/_client.py' 2026-03-27T01:07:46,879 adding 'omicverse/biocontext/_tools.py' 2026-03-27T01:07:46,884 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T01:07:46,887 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T01:07:46,891 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T01:07:46,892 adding 'omicverse/bulk/__init__.py' 2026-03-27T01:07:46,934 adding 'omicverse/bulk/_chm13.py' 2026-03-27T01:07:46,940 adding 'omicverse/bulk/_combat.py' 2026-03-27T01:07:46,942 adding 'omicverse/bulk/_decov.py' 2026-03-27T01:07:46,943 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T01:07:46,948 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T01:07:46,950 adding 'omicverse/bulk/_network.py' 2026-03-27T01:07:46,952 adding 'omicverse/bulk/_tcga.py' 2026-03-27T01:07:46,954 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T01:07:46,956 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T01:07:46,959 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T01:07:46,961 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T01:07:46,964 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T01:07:46,968 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T01:07:46,972 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T01:07:46,975 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T01:07:46,977 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T01:07:46,979 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T01:07:46,981 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T01:07:46,983 adding 'omicverse/data_files/README.md' 2026-03-27T01:07:47,023 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T01:07:47,026 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T01:07:47,543 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T01:07:47,574 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T01:07:47,578 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T01:07:47,580 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T01:07:47,604 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T01:07:47,645 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T01:07:47,686 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T01:07:47,692 adding 'omicverse/datasets/__init__.py' 2026-03-27T01:07:47,697 adding 'omicverse/datasets/_datasets.py' 2026-03-27T01:07:47,699 adding 'omicverse/datasets/_signatures.py' 2026-03-27T01:07:47,702 adding 'omicverse/external/__init__.py' 2026-03-27T01:07:47,704 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T01:07:47,706 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T01:07:47,707 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T01:07:47,709 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T01:07:47,712 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T01:07:47,715 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T01:07:47,719 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T01:07:47,720 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T01:07:47,722 adding 'omicverse/external/CAST/main.py' 2026-03-27T01:07:47,725 adding 'omicverse/external/CAST/utils.py' 2026-03-27T01:07:47,727 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T01:07:47,728 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T01:07:47,729 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T01:07:47,731 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T01:07:47,733 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T01:07:47,734 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T01:07:47,736 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T01:07:47,738 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T01:07:47,741 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T01:07:47,743 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T01:07:47,746 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T01:07:47,748 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T01:07:47,750 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T01:07:47,752 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T01:07:47,755 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T01:07:47,757 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T01:07:47,759 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T01:07:47,762 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T01:07:47,764 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T01:07:47,765 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T01:07:47,767 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T01:07:47,769 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T01:07:47,771 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T01:07:47,773 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T01:07:47,774 adding 'omicverse/external/GraphST/model.py' 2026-03-27T01:07:47,776 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T01:07:47,777 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T01:07:47,779 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T01:07:47,780 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T01:07:47,782 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T01:07:47,783 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T01:07:47,785 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T01:07:47,786 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T01:07:47,788 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T01:07:47,789 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T01:07:47,791 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T01:07:47,793 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T01:07:47,795 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T01:07:47,797 adding 'omicverse/external/PROST/layers.py' 2026-03-27T01:07:47,798 adding 'omicverse/external/PROST/model.py' 2026-03-27T01:07:47,800 adding 'omicverse/external/PROST/plot.py' 2026-03-27T01:07:47,804 adding 'omicverse/external/PROST/utils.py' 2026-03-27T01:07:47,806 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T01:07:47,808 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T01:07:47,810 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T01:07:47,811 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T01:07:47,834 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T01:07:47,838 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T01:07:47,839 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T01:07:47,841 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T01:07:47,842 adding 'omicverse/external/SEACells/core.py' 2026-03-27T01:07:47,846 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T01:07:47,849 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T01:07:47,850 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T01:07:47,852 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T01:07:47,854 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T01:07:47,857 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T01:07:47,859 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T01:07:47,860 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T01:07:47,862 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T01:07:47,863 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T01:07:47,865 adding 'omicverse/external/SEACells/version.py' 2026-03-27T01:07:47,866 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T01:07:47,868 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T01:07:47,869 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T01:07:47,871 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T01:07:47,872 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T01:07:47,874 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T01:07:47,877 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T01:07:47,879 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T01:07:47,880 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T01:07:47,882 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T01:07:47,884 adding 'omicverse/external/STT/__init__.py' 2026-03-27T01:07:47,885 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T01:07:47,889 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T01:07:47,890 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T01:07:47,893 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T01:07:47,895 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T01:07:47,896 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T01:07:47,898 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T01:07:47,900 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T01:07:47,902 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T01:07:47,903 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T01:07:47,905 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T01:07:47,906 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T01:07:47,909 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T01:07:47,910 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T01:07:47,912 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T01:07:47,913 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T01:07:47,935 adding 'omicverse/external/VIA/core.py' 2026-03-27T01:07:47,938 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T01:07:47,962 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T01:07:47,988 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T01:07:48,003 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T01:07:48,005 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T01:07:48,007 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T01:07:48,020 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T01:07:48,022 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T01:07:48,024 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T01:07:48,026 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T01:07:48,028 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T01:07:48,029 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T01:07:48,030 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T01:07:48,032 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T01:07:48,034 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T01:07:48,035 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T01:07:48,037 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T01:07:48,038 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-03-27T01:07:48,040 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-03-27T01:07:48,042 adding 'omicverse/external/bulk2single/pybayesprism/optim.py' 2026-03-27T01:07:48,044 adding 'omicverse/external/bulk2single/pybayesprism/prism.py' 2026-03-27T01:07:48,046 adding 'omicverse/external/bulk2single/pybayesprism/process_input.py' 2026-03-27T01:07:48,047 adding 'omicverse/external/bulk2single/pybayesprism/references.py' 2026-03-27T01:07:48,048 adding 'omicverse/external/bulk2single/pybayesprism/run.py' 2026-03-27T01:07:48,049 adding 'omicverse/external/bulk2single/pybayesprism/theta_post.py' 2026-03-27T01:07:48,741 adding 'omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt' 2026-03-27T01:07:48,793 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt' 2026-03-27T01:07:48,820 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt' 2026-03-27T01:07:48,823 adding 'omicverse/external/bulk2single/scSemiProfiler/__init__.py' 2026-03-27T01:07:48,828 adding 'omicverse/external/bulk2single/scSemiProfiler/fast_generator.py' 2026-03-27T01:07:48,829 adding 'omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py' 2026-03-27T01:07:48,868 adding 'omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt' 2026-03-27T01:07:48,874 adding 'omicverse/external/bulk2single/scSemiProfiler/inference.py' 2026-03-27T01:07:48,878 adding 'omicverse/external/bulk2single/scSemiProfiler/initial_setup.py' 2026-03-27T01:07:48,882 adding 'omicverse/external/bulk2single/scSemiProfiler/oldinference.py' 2026-03-27T01:07:48,884 adding 'omicverse/external/bulk2single/scSemiProfiler/representative_selection.py' 2026-03-27T01:07:48,887 adding 'omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py' 2026-03-27T01:07:48,895 adding 'omicverse/external/bulk2single/scSemiProfiler/utils.py' 2026-03-27T01:07:48,901 adding 'omicverse/external/bulk2single/scSemiProfiler/vaegan.py' 2026-03-27T01:07:48,903 adding 'omicverse/external/cellanova/__init__.py' 2026-03-27T01:07:48,906 adding 'omicverse/external/cellanova/model.py' 2026-03-27T01:07:48,908 adding 'omicverse/external/cellanova/utils.py' 2026-03-27T01:07:48,919 adding 'omicverse/external/cnmf/cnmf.py' 2026-03-27T01:07:48,923 adding 'omicverse/external/cnmf/preprocess.py' 2026-03-27T01:07:48,928 adding 'omicverse/external/commot/__init__.py' 2026-03-27T01:07:48,929 adding 'omicverse/external/commot/_optimal_transport/__init__.py' 2026-03-27T01:07:48,932 adding 'omicverse/external/commot/_optimal_transport/_cot.py' 2026-03-27T01:07:48,934 adding 'omicverse/external/commot/_optimal_transport/_unot.py' 2026-03-27T01:07:48,936 adding 'omicverse/external/commot/_optimal_transport/_unot_torch.py' 2026-03-27T01:07:48,938 adding 'omicverse/external/commot/_optimal_transport/_usot.py' 2026-03-27T01:07:48,940 adding 'omicverse/external/commot/_utils/__init__.py' 2026-03-27T01:07:48,941 adding 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2026-03-27T01:07:49,628 adding 'omicverse/external/gseapy/plot.py' 2026-03-27T01:07:49,630 adding 'omicverse/external/gseapy/stats.py' 2026-03-27T01:07:49,631 adding 'omicverse/external/gseapy/utils.py' 2026-03-27T01:07:49,633 adding 'omicverse/external/harmony/__init__.py' 2026-03-27T01:07:49,637 adding 'omicverse/external/harmony/harmony.py' 2026-03-27T01:07:49,638 adding 'omicverse/external/harmony/lisi.py' 2026-03-27T01:07:49,640 adding 'omicverse/external/hotspot/__init__.py' 2026-03-27T01:07:49,642 adding 'omicverse/external/hotspot/bernoulli_model.py' 2026-03-27T01:07:49,643 adding 'omicverse/external/hotspot/danb_model.py' 2026-03-27T01:07:49,646 adding 'omicverse/external/hotspot/hotspot.py' 2026-03-27T01:07:49,648 adding 'omicverse/external/hotspot/knn.py' 2026-03-27T01:07:49,650 adding 'omicverse/external/hotspot/local_stats.py' 2026-03-27T01:07:49,653 adding 'omicverse/external/hotspot/local_stats_pairs.py' 2026-03-27T01:07:49,656 adding 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2026-03-27T01:07:49,726 adding 'omicverse/external/latentvelo/plotting/__init__.py' 2026-03-27T01:07:49,728 adding 'omicverse/external/latentvelo/plotting/metrics.py' 2026-03-27T01:07:49,730 adding 'omicverse/external/latentvelo/plotting/scatter_stream.py' 2026-03-27T01:07:49,731 adding 'omicverse/external/latentvelo/tools/__init__.py' 2026-03-27T01:07:49,733 adding 'omicverse/external/latentvelo/tools/batch_correction.py' 2026-03-27T01:07:49,734 adding 'omicverse/external/latentvelo/tools/cell_trajectories.py' 2026-03-27T01:07:49,735 adding 'omicverse/external/latentvelo/tools/check_velocity.py' 2026-03-27T01:07:49,737 adding 'omicverse/external/latentvelo/tools/trad_velocity.py' 2026-03-27T01:07:49,739 adding 'omicverse/external/mofapy2/__init__.py' 2026-03-27T01:07:49,740 adding 'omicverse/external/mofapy2/config.py' 2026-03-27T01:07:49,741 adding 'omicverse/external/mofapy2/version.py' 2026-03-27T01:07:49,743 adding 'omicverse/external/mofapy2/build_model/__init__.py' 2026-03-27T01:07:49,744 adding 'omicverse/external/mofapy2/build_model/build_model.py' 2026-03-27T01:07:49,747 adding 'omicverse/external/mofapy2/build_model/init_model.py' 2026-03-27T01:07:49,750 adding 'omicverse/external/mofapy2/build_model/save_model.py' 2026-03-27T01:07:49,752 adding 'omicverse/external/mofapy2/build_model/train_model.py' 2026-03-27T01:07:49,753 adding 'omicverse/external/mofapy2/build_model/utils.py' 2026-03-27T01:07:49,757 adding 'omicverse/external/mofapy2/core/BayesNet.py' 2026-03-27T01:07:49,758 adding 'omicverse/external/mofapy2/core/__init__.py' 2026-03-27T01:07:49,760 adding 'omicverse/external/mofapy2/core/gp_utils.py' 2026-03-27T01:07:49,761 adding 'omicverse/external/mofapy2/core/gpu_utils.py' 2026-03-27T01:07:49,763 adding 'omicverse/external/mofapy2/core/utils.py' 2026-03-27T01:07:49,765 adding 'omicverse/external/mofapy2/core/distributions/__init__.py' 2026-03-27T01:07:49,766 adding 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adding 'omicverse/external/mofapy2/core/nodes/ZgU_node.py' 2026-03-27T01:07:49,812 adding 'omicverse/external/mofapy2/core/nodes/__init__.py' 2026-03-27T01:07:49,814 adding 'omicverse/external/mofapy2/core/nodes/basic_nodes.py' 2026-03-27T01:07:49,815 adding 'omicverse/external/mofapy2/core/nodes/multiview_nodes.py' 2026-03-27T01:07:49,818 adding 'omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py' 2026-03-27T01:07:49,820 adding 'omicverse/external/mofapy2/core/nodes/variational_nodes.py' 2026-03-27T01:07:49,821 adding 'omicverse/external/mofapy2/run/__init__.py' 2026-03-27T01:07:49,829 adding 'omicverse/external/mofapy2/run/entry_point.py' 2026-03-27T01:07:49,965 adding 'omicverse/external/mofapy2/run/test_data/view_0.txt' 2026-03-27T01:07:50,102 adding 'omicverse/external/mofapy2/run/test_data/view_1.txt' 2026-03-27T01:07:50,238 adding 'omicverse/external/mofapy2/run/test_data/view_2.txt' 2026-03-27T01:07:50,348 adding 'omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt' 2026-03-27T01:07:50,465 adding 'omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt' 2026-03-27T01:07:50,580 adding 'omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt' 2026-03-27T01:07:50,588 adding 'omicverse/external/mofapy2/simulate/__init__.py' 2026-03-27T01:07:50,589 adding 'omicverse/external/mofapy2/simulate/simulate_mofa.py' 2026-03-27T01:07:50,592 adding 'omicverse/external/mpl_chord/chord_diagram.py' 2026-03-27T01:07:50,594 adding 'omicverse/external/mpl_chord/gradient.py' 2026-03-27T01:07:50,595 adding 'omicverse/external/mpl_chord/utilities.py' 2026-03-27T01:07:50,598 adding 'omicverse/external/nocd/__init__.py' 2026-03-27T01:07:50,599 adding 'omicverse/external/nocd/data.py' 2026-03-27T01:07:50,600 adding 'omicverse/external/nocd/generate.py' 2026-03-27T01:07:50,602 adding 'omicverse/external/nocd/sampler.py' 2026-03-27T01:07:50,603 adding 'omicverse/external/nocd/train.py' 2026-03-27T01:07:50,605 adding 'omicverse/external/nocd/utils.py' 2026-03-27T01:07:50,606 adding 'omicverse/external/nocd/metrics/__init__.py' 2026-03-27T01:07:50,608 adding 'omicverse/external/nocd/metrics/supervised.py' 2026-03-27T01:07:50,609 adding 'omicverse/external/nocd/metrics/unsupervised.py' 2026-03-27T01:07:50,611 adding 'omicverse/external/nocd/nn/__init__.py' 2026-03-27T01:07:50,613 adding 'omicverse/external/nocd/nn/decoder.py' 2026-03-27T01:07:50,614 adding 'omicverse/external/nocd/nn/gcn.py' 2026-03-27T01:07:50,615 adding 'omicverse/external/nocd/nn/imrpoved_gcn.py' 2026-03-27T01:07:50,617 adding 'omicverse/external/palantir/__init__.py' 2026-03-27T01:07:50,618 adding 'omicverse/external/palantir/config.py' 2026-03-27T01:07:50,622 adding 'omicverse/external/palantir/core.py' 2026-03-27T01:07:50,623 adding 'omicverse/external/palantir/io.py' 2026-03-27T01:07:50,633 adding 'omicverse/external/palantir/plot.py' 2026-03-27T01:07:50,636 adding 'omicverse/external/palantir/plot_utils.py' 2026-03-27T01:07:50,637 adding 'omicverse/external/palantir/preprocess.py' 2026-03-27T01:07:50,640 adding 'omicverse/external/palantir/presults.py' 2026-03-27T01:07:50,644 adding 'omicverse/external/palantir/utils.py' 2026-03-27T01:07:50,646 adding 'omicverse/external/palantir/validation.py' 2026-03-27T01:07:50,647 adding 'omicverse/external/palantir/version.py' 2026-03-27T01:07:50,651 adding 'omicverse/external/pyscenic/_version.py' 2026-03-27T01:07:50,653 adding 'omicverse/external/pyscenic/binarization.py' 2026-03-27T01:07:50,654 adding 'omicverse/external/pyscenic/diptest.py' 2026-03-27T01:07:50,656 adding 'omicverse/external/pyscenic/export.py' 2026-03-27T01:07:50,658 adding 'omicverse/external/pyscenic/featureseq.py' 2026-03-27T01:07:50,659 adding 'omicverse/external/pyscenic/log.py' 2026-03-27T01:07:50,661 adding 'omicverse/external/pyscenic/math.py' 2026-03-27T01:07:50,662 adding 'omicverse/external/pyscenic/plotting.py' 2026-03-27T01:07:50,664 adding 'omicverse/external/pyscenic/prune.py' 2026-03-27T01:07:50,666 adding 'omicverse/external/pyscenic/rss.py' 2026-03-27T01:07:50,668 adding 'omicverse/external/pyscenic/transform.py' 2026-03-27T01:07:50,671 adding 'omicverse/external/pyscenic/utils.py' 2026-03-27T01:07:50,673 adding 'omicverse/external/scMulan/__init__.py' 2026-03-27T01:07:50,675 adding 'omicverse/external/scMulan/scMulan.py' 2026-03-27T01:07:50,677 adding 'omicverse/external/scMulan/scMulan_npu.py' 2026-03-27T01:07:50,679 adding 'omicverse/external/scMulan/model/model.py' 2026-03-27T01:07:50,681 adding 'omicverse/external/scMulan/model/model_kvcache.py' 2026-03-27T01:07:52,396 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv' 2026-03-27T01:07:52,581 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py' 2026-03-27T01:07:52,725 adding 'omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt' 2026-03-27T01:07:52,737 adding 'omicverse/external/scMulan/utils/hf_tokenizer.py' 2026-03-27T01:07:52,738 adding 'omicverse/external/scMulan/utils/utils.py' 2026-03-27T01:07:52,740 adding 'omicverse/external/scSLAT/__init__.py' 2026-03-27T01:07:52,742 adding 'omicverse/external/scSLAT/metrics.py' 2026-03-27T01:07:52,743 adding 'omicverse/external/scSLAT/utils.py' 2026-03-27T01:07:52,745 adding 'omicverse/external/scSLAT/model/__init__.py' 2026-03-27T01:07:52,746 adding 'omicverse/external/scSLAT/model/batch.py' 2026-03-27T01:07:52,748 adding 'omicverse/external/scSLAT/model/graphmodel.py' 2026-03-27T01:07:52,750 adding 'omicverse/external/scSLAT/model/loaddata.py' 2026-03-27T01:07:52,751 adding 'omicverse/external/scSLAT/model/loss.py' 2026-03-27T01:07:52,752 adding 'omicverse/external/scSLAT/model/preprocess.py' 2026-03-27T01:07:52,754 adding 'omicverse/external/scSLAT/model/train.py' 2026-03-27T01:07:52,756 adding 'omicverse/external/scSLAT/model/utils.py' 2026-03-27T01:07:52,758 adding 'omicverse/external/scSLAT/model/graphconv/__init__.py' 2026-03-27T01:07:52,759 adding 'omicverse/external/scSLAT/model/graphconv/combnet.py' 2026-03-27T01:07:52,761 adding 'omicverse/external/scSLAT/model/prematch/__init__.py' 2026-03-27T01:07:52,762 adding 'omicverse/external/scSLAT/model/prematch/icp.py' 2026-03-27T01:07:52,764 adding 'omicverse/external/scSLAT/model/prematch/utils.py' 2026-03-27T01:07:52,766 adding 'omicverse/external/scSLAT/viz/__init__.py' 2026-03-27T01:07:52,767 adding 'omicverse/external/scSLAT/viz/color.py' 2026-03-27T01:07:52,771 adding 'omicverse/external/scSLAT/viz/multi_dataset.py' 2026-03-27T01:07:52,773 adding 'omicverse/external/scanorama/__init__.py' 2026-03-27T01:07:52,777 adding 'omicverse/external/scanorama/scanorama.py' 2026-03-27T01:07:52,778 adding 'omicverse/external/scanorama/utils.py' 2026-03-27T01:07:52,780 adding 'omicverse/external/scdiffusion/cell_sample.py' 2026-03-27T01:07:52,782 adding 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