2026-03-27T01:09:42,835 Created temporary directory: /tmp/pip-ephem-wheel-cache-oce_7wpa 2026-03-27T01:09:42,837 Created temporary directory: /tmp/pip-build-tracker-wx3iicog 2026-03-27T01:09:42,837 Initialized build tracking at /tmp/pip-build-tracker-wx3iicog 2026-03-27T01:09:42,838 Created build tracker: /tmp/pip-build-tracker-wx3iicog 2026-03-27T01:09:42,838 Entered build tracker: /tmp/pip-build-tracker-wx3iicog 2026-03-27T01:09:42,839 Created temporary directory: /tmp/pip-wheel-g6ljbp1r 2026-03-27T01:09:42,842 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T01:09:42,844 Created temporary directory: /tmp/pip-ephem-wheel-cache-o8svegjg 2026-03-27T01:09:42,870 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T01:09:42,874 2 location(s) to search for versions of omicverse: 2026-03-27T01:09:42,874 * https://pypi.org/simple/omicverse/ 2026-03-27T01:09:42,874 * https://www.piwheels.org/simple/omicverse/ 2026-03-27T01:09:42,874 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-27T01:09:42,875 Getting page https://pypi.org/simple/omicverse/ 2026-03-27T01:09:42,876 Found index url https://pypi.org/simple 2026-03-27T01:09:43,031 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-27T01:09:43,055 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,382 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,382 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,383 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,383 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,384 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,385 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,385 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,386 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,387 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,387 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,387 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,388 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,388 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,389 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,389 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,390 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:09:43,391 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T01:09:43,391 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T01:09:43,418 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T01:09:43,436 Collecting omicverse==2.0.7 2026-03-27T01:09:43,438 Created temporary directory: /tmp/pip-unpack-5a3mwiu5 2026-03-27T01:09:43,927 Downloading omicverse-2.0.7.tar.gz (11.8 MB) 2026-03-27T01:09:49,998 Added omicverse==2.0.7 from https://files.pythonhosted.org/packages/32/53/10f4cf98b3c583f46e1da075445322e91ba75d4d59615a2169bfed9d893f/omicverse-2.0.7.tar.gz to build tracker '/tmp/pip-build-tracker-wx3iicog' 2026-03-27T01:09:50,005 Created temporary directory: /tmp/pip-build-env-_3v7iaj1 2026-03-27T01:09:50,009 Installing build dependencies: started 2026-03-27T01:09:50,011 Running command pip subprocess to install build dependencies 2026-03-27T01:09:51,121 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T01:09:51,594 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T01:09:51,617 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T01:09:53,375 Collecting setuptools>=61 2026-03-27T01:09:53,496 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T01:09:53,764 Collecting wheel 2026-03-27T01:09:53,779 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T01:09:55,825 Collecting Cython 2026-03-27T01:09:56,587 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T01:09:57,061 Collecting packaging>=24.0 2026-03-27T01:09:57,078 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T01:10:00,060 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T01:10:07,319 Creating /tmp/pip-build-env-_3v7iaj1/overlay/local/bin 2026-03-27T01:10:07,321 changing mode of /tmp/pip-build-env-_3v7iaj1/overlay/local/bin/cygdb to 755 2026-03-27T01:10:07,323 changing mode of /tmp/pip-build-env-_3v7iaj1/overlay/local/bin/cython to 755 2026-03-27T01:10:07,326 changing mode of /tmp/pip-build-env-_3v7iaj1/overlay/local/bin/cythonize to 755 2026-03-27T01:10:07,453 changing mode of /tmp/pip-build-env-_3v7iaj1/overlay/local/bin/wheel to 755 2026-03-27T01:10:07,480 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T01:10:07,855 Installing build dependencies: finished with status 'done' 2026-03-27T01:10:07,861 Getting requirements to build wheel: started 2026-03-27T01:10:07,862 Running command Getting requirements to build wheel 2026-03-27T01:10:08,594 /tmp/pip-build-env-_3v7iaj1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:10:08,594 !! 2026-03-27T01:10:08,595 ******************************************************************************** 2026-03-27T01:10:08,596 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:10:08,597 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:10:08,598 or your builds will no longer be supported. 2026-03-27T01:10:08,599 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:10:08,599 ******************************************************************************** 2026-03-27T01:10:08,600 !! 2026-03-27T01:10:08,601 corresp(dist, value, root_dir) 2026-03-27T01:10:08,876 running egg_info 2026-03-27T01:10:08,882 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:10:08,900 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:10:08,901 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:10:08,911 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:10:08,912 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:10:09,149 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:09,227 reading manifest template 'MANIFEST.in' 2026-03-27T01:10:10,089 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:10:11,385 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:10:11,795 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:10:15,762 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:10:16,217 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:10:16,639 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:10:17,081 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:10:17,506 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:10:17,954 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:10:18,385 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:10:18,388 no previously-included directories found matching '.git' 2026-03-27T01:10:18,391 no previously-included directories found matching '.github' 2026-03-27T01:10:18,396 no previously-included directories found matching '.claude' 2026-03-27T01:10:18,400 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:10:18,404 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:10:18,408 no previously-included directories found matching '.vscode' 2026-03-27T01:10:18,412 no previously-included directories found matching 'docs' 2026-03-27T01:10:18,416 no previously-included directories found matching 'tests' 2026-03-27T01:10:18,420 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:10:18,424 no previously-included directories found matching 'READMEM' 2026-03-27T01:10:18,429 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:10:18,433 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:10:18,437 no previously-included directories found matching 'tmp' 2026-03-27T01:10:18,441 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:10:18,445 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:10:18,454 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:10:18,465 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:10:18,474 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:10:18,475 adding license file 'LICENSE' 2026-03-27T01:10:18,552 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:18,666 Getting requirements to build wheel: finished with status 'done' 2026-03-27T01:10:18,669 Created temporary directory: /tmp/pip-modern-metadata-0fbji9qe 2026-03-27T01:10:18,671 Preparing metadata (pyproject.toml): started 2026-03-27T01:10:18,673 Running command Preparing metadata (pyproject.toml) 2026-03-27T01:10:19,314 /tmp/pip-build-env-_3v7iaj1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:10:19,314 !! 2026-03-27T01:10:19,315 ******************************************************************************** 2026-03-27T01:10:19,316 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:10:19,317 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:10:19,317 or your builds will no longer be supported. 2026-03-27T01:10:19,318 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:10:19,319 ******************************************************************************** 2026-03-27T01:10:19,320 !! 2026-03-27T01:10:19,321 corresp(dist, value, root_dir) 2026-03-27T01:10:19,601 running dist_info 2026-03-27T01:10:19,612 creating /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info 2026-03-27T01:10:19,613 writing /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/PKG-INFO 2026-03-27T01:10:19,631 writing dependency_links to /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/dependency_links.txt 2026-03-27T01:10:19,633 writing entry points to /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/entry_points.txt 2026-03-27T01:10:19,643 writing requirements to /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/requires.txt 2026-03-27T01:10:19,644 writing top-level names to /tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/top_level.txt 2026-03-27T01:10:19,645 writing manifest file '/tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:19,850 reading manifest file '/tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:19,852 reading manifest template 'MANIFEST.in' 2026-03-27T01:10:20,800 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:10:22,090 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:10:22,522 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:10:26,378 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:10:26,802 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:10:27,225 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:10:27,661 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:10:28,086 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:10:28,497 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:10:28,911 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:10:28,913 no previously-included directories found matching '.git' 2026-03-27T01:10:28,916 no previously-included directories found matching '.github' 2026-03-27T01:10:28,918 no previously-included directories found matching '.claude' 2026-03-27T01:10:28,920 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:10:28,923 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:10:28,925 no previously-included directories found matching '.vscode' 2026-03-27T01:10:28,927 no previously-included directories found matching 'docs' 2026-03-27T01:10:28,929 no previously-included directories found matching 'tests' 2026-03-27T01:10:28,932 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:10:28,934 no previously-included directories found matching 'READMEM' 2026-03-27T01:10:28,936 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:10:28,939 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:10:28,941 no previously-included directories found matching 'tmp' 2026-03-27T01:10:28,944 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:10:28,946 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:10:28,950 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:10:28,956 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:10:28,960 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:10:28,961 adding license file 'LICENSE' 2026-03-27T01:10:29,016 writing manifest file '/tmp/pip-modern-metadata-0fbji9qe/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:29,019 creating '/tmp/pip-modern-metadata-0fbji9qe/omicverse-2.0.7.dist-info' 2026-03-27T01:10:29,163 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T01:10:29,178 Source in /tmp/pip-wheel-g6ljbp1r/omicverse_0fecc9bc7e024b57bc1a4fd15b77fcc6 has version 2.0.7, which satisfies requirement omicverse==2.0.7 from https://files.pythonhosted.org/packages/32/53/10f4cf98b3c583f46e1da075445322e91ba75d4d59615a2169bfed9d893f/omicverse-2.0.7.tar.gz 2026-03-27T01:10:29,179 Removed omicverse==2.0.7 from https://files.pythonhosted.org/packages/32/53/10f4cf98b3c583f46e1da075445322e91ba75d4d59615a2169bfed9d893f/omicverse-2.0.7.tar.gz from build tracker '/tmp/pip-build-tracker-wx3iicog' 2026-03-27T01:10:29,203 Created temporary directory: /tmp/pip-unpack-2x8egqfd 2026-03-27T01:10:29,204 Building wheels for collected packages: omicverse 2026-03-27T01:10:29,209 Created temporary directory: /tmp/pip-wheel-yhtkcfik 2026-03-27T01:10:29,209 Destination directory: /tmp/pip-wheel-yhtkcfik 2026-03-27T01:10:29,211 Building wheel for omicverse (pyproject.toml): started 2026-03-27T01:10:29,212 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T01:10:29,848 /tmp/pip-build-env-_3v7iaj1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:10:29,849 !! 2026-03-27T01:10:29,850 ******************************************************************************** 2026-03-27T01:10:29,850 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:10:29,851 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:10:29,851 or your builds will no longer be supported. 2026-03-27T01:10:29,852 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:10:29,853 ******************************************************************************** 2026-03-27T01:10:29,854 !! 2026-03-27T01:10:29,854 corresp(dist, value, root_dir) 2026-03-27T01:10:30,110 running bdist_wheel 2026-03-27T01:10:30,130 running build 2026-03-27T01:10:30,130 running build_py 2026-03-27T01:10:30,137 creating build/lib/omicverse 2026-03-27T01:10:30,139 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T01:10:30,142 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T01:10:30,147 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T01:10:30,150 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T01:10:30,152 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T01:10:30,154 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T01:10:30,157 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T01:10:30,160 creating build/lib/omicverse/popv 2026-03-27T01:10:30,161 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,163 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,167 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,170 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,172 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,175 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T01:10:30,177 creating build/lib/omicverse/data_files 2026-03-27T01:10:30,178 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T01:10:30,180 creating build/lib/omicverse/external 2026-03-27T01:10:30,181 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T01:10:30,184 creating build/lib/omicverse/datasets 2026-03-27T01:10:30,185 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T01:10:30,190 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T01:10:30,192 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T01:10:30,195 creating build/lib/omicverse/io 2026-03-27T01:10:30,196 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T01:10:30,198 creating build/lib/omicverse/llm 2026-03-27T01:10:30,199 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,202 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,205 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,245 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,249 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,253 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,258 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,261 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,267 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,270 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,275 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,277 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T01:10:30,282 creating build/lib/omicverse/single 2026-03-27T01:10:30,283 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T01:10:30,286 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T01:10:30,289 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T01:10:30,292 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T01:10:30,295 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T01:10:30,299 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T01:10:30,302 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T01:10:30,305 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T01:10:30,308 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T01:10:30,311 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T01:10:30,313 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T01:10:30,316 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T01:10:30,319 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T01:10:30,321 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T01:10:30,325 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T01:10:30,328 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T01:10:30,331 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T01:10:30,334 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T01:10:30,337 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T01:10:30,341 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T01:10:30,344 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T01:10:30,346 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T01:10:30,349 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T01:10:30,352 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T01:10:30,356 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T01:10:30,405 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T01:10:30,407 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T01:10:30,410 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T01:10:30,413 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T01:10:30,455 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T01:10:30,460 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T01:10:30,462 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T01:10:30,465 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T01:10:30,469 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T01:10:30,471 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T01:10:30,475 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T01:10:30,477 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T01:10:30,480 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T01:10:30,483 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T01:10:30,485 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T01:10:30,487 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T01:10:30,492 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T01:10:30,495 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T01:10:30,498 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T01:10:30,501 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,502 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,504 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,507 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,509 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,511 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,513 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,515 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,517 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,519 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:30,521 creating build/lib/omicverse/alignment 2026-03-27T01:10:30,522 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,525 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,527 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,530 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,532 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,535 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,537 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,540 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,542 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T01:10:30,545 creating build/lib/omicverse/space 2026-03-27T01:10:30,546 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T01:10:30,549 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T01:10:30,551 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T01:10:30,554 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T01:10:30,557 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T01:10:30,560 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T01:10:30,562 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T01:10:30,565 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T01:10:30,568 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T01:10:30,571 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T01:10:30,574 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T01:10:30,576 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T01:10:30,578 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T01:10:30,580 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T01:10:30,583 creating build/lib/omicverse/jarvis 2026-03-27T01:10:30,584 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,587 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,588 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,591 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,593 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,596 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,599 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,601 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,603 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,605 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,608 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T01:10:30,611 creating build/lib/omicverse/utils 2026-03-27T01:10:30,612 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,616 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,619 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,621 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,623 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,626 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,628 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,631 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,633 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,636 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,638 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,642 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,644 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,646 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,649 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,653 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,656 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,658 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,661 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,664 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,669 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,675 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,678 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,681 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,683 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,686 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,688 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,691 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,694 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,696 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,698 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,700 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,702 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,704 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T01:10:30,709 creating build/lib/omicverse/pl 2026-03-27T01:10:30,710 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,714 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,717 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,721 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,724 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,730 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,733 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,736 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,743 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,745 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,747 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,750 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,752 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,755 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,757 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,760 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,763 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,767 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,770 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,772 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T01:10:30,776 creating build/lib/omicverse/agent 2026-03-27T01:10:30,777 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T01:10:30,780 creating build/lib/omicverse/pp 2026-03-27T01:10:30,781 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,784 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,788 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,790 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,792 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,795 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,797 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,799 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,802 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,804 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,807 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,810 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,812 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,815 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,818 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,820 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,824 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,827 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,830 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,832 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,834 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,836 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,839 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T01:10:30,842 creating build/lib/omicverse/fm 2026-03-27T01:10:30,843 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T01:10:30,846 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T01:10:30,849 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T01:10:30,852 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T01:10:30,854 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T01:10:30,856 creating build/lib/omicverse/biocontext 2026-03-27T01:10:30,857 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T01:10:30,859 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T01:10:30,862 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T01:10:30,865 creating build/lib/omicverse/mcp 2026-03-27T01:10:30,866 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,868 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,871 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,872 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,876 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,878 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,881 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,883 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,885 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,888 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,890 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,892 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,895 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T01:10:30,898 creating build/lib/omicverse/bulk 2026-03-27T01:10:30,899 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,901 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,904 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,907 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,910 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,912 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,914 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,930 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,934 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,937 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,939 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T01:10:30,942 creating build/lib/omicverse/bulk2single 2026-03-27T01:10:30,943 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,946 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,949 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,952 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,955 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,957 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,960 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,963 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,966 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,970 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T01:10:30,973 creating build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,974 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,976 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,979 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,981 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,984 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,986 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,989 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,991 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,994 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,997 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:30,999 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:31,001 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:10:31,004 creating build/lib/omicverse/popv/hub 2026-03-27T01:10:31,005 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T01:10:31,008 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T01:10:31,011 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T01:10:31,013 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T01:10:31,017 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T01:10:31,020 creating build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,021 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,024 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,027 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,030 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,032 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:31,036 creating build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,037 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,040 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,042 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,045 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,048 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,051 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,054 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,057 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,060 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,062 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:10:31,067 creating build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,068 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,071 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,074 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,076 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,080 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:10:31,083 creating build/lib/omicverse/external/scMulan 2026-03-27T01:10:31,084 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:10:31,087 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:10:31,090 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:10:31,093 creating build/lib/omicverse/external/gaston 2026-03-27T01:10:31,094 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,097 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,099 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,102 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,105 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,107 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,110 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,113 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,115 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,118 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,121 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,123 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,126 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,128 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,130 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,133 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T01:10:31,137 creating build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,139 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,141 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,144 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,147 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,149 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,151 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,155 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,158 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,160 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,164 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,166 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,168 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,172 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:10:31,175 creating build/lib/omicverse/external/scSLAT 2026-03-27T01:10:31,176 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:10:31,179 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:10:31,182 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:10:31,185 creating build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,186 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,188 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,191 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,194 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,198 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,200 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:10:31,203 creating build/lib/omicverse/external/PROST 2026-03-27T01:10:31,204 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,207 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,210 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,212 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,215 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,218 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,220 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T01:10:31,222 creating build/lib/omicverse/external/STT 2026-03-27T01:10:31,223 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T01:10:31,225 creating build/lib/omicverse/external/cellanova 2026-03-27T01:10:31,226 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:10:31,229 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:10:31,231 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:10:31,233 creating build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,234 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,236 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,238 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,240 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,242 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,245 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,247 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:10:31,250 creating build/lib/omicverse/external/BINARY 2026-03-27T01:10:31,252 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:10:31,254 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:10:31,256 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:10:31,259 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:10:31,261 creating build/lib/omicverse/external/nocd 2026-03-27T01:10:31,262 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,264 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,266 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,267 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,270 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,271 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T01:10:31,274 creating build/lib/omicverse/external/tosica 2026-03-27T01:10:31,274 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T01:10:31,277 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T01:10:31,279 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T01:10:31,281 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T01:10:31,283 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T01:10:31,286 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,287 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,290 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,301 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,303 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,305 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:10:31,308 creating build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,309 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,311 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,314 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,316 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,319 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,321 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,324 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,326 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,328 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:10:31,331 creating build/lib/omicverse/external/mpl_chord 2026-03-27T01:10:31,332 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:10:31,334 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:10:31,337 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:10:31,340 creating build/lib/omicverse/external/scdiffusion 2026-03-27T01:10:31,341 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:10:31,343 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:10:31,345 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:10:31,347 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:10:31,350 creating build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,351 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,353 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,355 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,357 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,358 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,362 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,364 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,367 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,369 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,371 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,374 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,376 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:10:31,379 creating build/lib/omicverse/external/somde 2026-03-27T01:10:31,380 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T01:10:31,382 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T01:10:31,385 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T01:10:31,387 creating build/lib/omicverse/external/commot 2026-03-27T01:10:31,388 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T01:10:31,390 creating build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,391 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,393 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,396 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,398 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,400 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,402 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:10:31,404 creating build/lib/omicverse/external/GNTD 2026-03-27T01:10:31,405 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:10:31,407 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:10:31,410 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:10:31,412 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:10:31,415 creating build/lib/omicverse/external/harmony 2026-03-27T01:10:31,416 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T01:10:31,419 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T01:10:31,421 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T01:10:31,423 creating build/lib/omicverse/external/cnmf 2026-03-27T01:10:31,424 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:10:31,428 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:10:31,431 creating build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,432 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,434 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,436 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,438 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,441 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,443 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,446 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,448 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,450 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,452 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,454 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:10:31,456 creating build/lib/omicverse/external/spaco 2026-03-27T01:10:31,457 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,459 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,461 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,463 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,465 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,467 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,470 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,472 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,475 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T01:10:31,477 creating build/lib/omicverse/external/spaceflow 2026-03-27T01:10:31,478 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:10:31,479 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:10:31,481 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:10:31,484 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,485 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,487 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,489 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,492 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,494 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:10:31,496 creating build/lib/omicverse/external/CAST 2026-03-27T01:10:31,497 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,500 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,502 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,505 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,507 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,510 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,512 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T01:10:31,514 creating build/lib/omicverse/external/VIA 2026-03-27T01:10:31,515 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,521 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,523 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,529 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,531 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,537 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,542 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T01:10:31,544 creating build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,545 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,547 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,549 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,551 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,554 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,556 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,559 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,562 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,564 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,566 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,568 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,570 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,572 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,575 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,577 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:10:31,580 creating build/lib/omicverse/external/cytotrace2 2026-03-27T01:10:31,580 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:10:31,582 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:10:31,585 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:10:31,587 creating build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,588 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,590 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,592 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,595 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,597 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,599 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:31,602 creating build/lib/omicverse/external/scrublet 2026-03-27T01:10:31,603 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:10:31,605 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:10:31,608 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:10:31,610 creating build/lib/omicverse/external/bin2cell 2026-03-27T01:10:31,611 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:10:31,615 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:10:31,617 creating build/lib/omicverse/external/datacollect 2026-03-27T01:10:31,618 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:10:31,621 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:10:31,624 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:10:31,626 creating build/lib/omicverse/external/mofapy2 2026-03-27T01:10:31,627 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:10:31,629 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:10:31,631 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:10:31,633 creating build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,634 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,636 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,640 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,643 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,645 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,646 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,649 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,651 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:10:31,654 creating build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,655 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,657 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,659 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,662 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,663 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,665 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,667 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,669 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,671 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,673 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,675 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,677 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,679 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,681 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,682 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,685 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,688 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,690 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,691 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,693 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,695 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:10:31,698 creating build/lib/omicverse/external/topact 2026-03-27T01:10:31,699 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,701 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,703 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,705 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,706 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,709 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,714 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,715 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T01:10:31,717 creating build/lib/omicverse/external/flowsig 2026-03-27T01:10:31,718 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T01:10:31,721 creating build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,722 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,724 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,727 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,729 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,732 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,735 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,737 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,740 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,742 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:10:31,745 creating build/lib/omicverse/external/palantir 2026-03-27T01:10:31,746 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,748 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,750 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,753 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,755 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,757 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,760 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,761 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,765 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,767 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,769 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T01:10:31,771 creating build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,772 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,775 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,776 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,778 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,781 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,783 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,784 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:10:31,787 creating build/lib/omicverse/external/tape 2026-03-27T01:10:31,788 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,790 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,792 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,794 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,796 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,799 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T01:10:31,801 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,802 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,804 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,806 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,808 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,810 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:10:31,813 creating build/lib/omicverse/external/scanorama 2026-03-27T01:10:31,814 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:10:31,816 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:10:31,819 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:10:31,821 creating build/lib/omicverse/external/bulk2single 2026-03-27T01:10:31,822 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T01:10:31,824 creating build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,825 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,827 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,830 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,833 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,836 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,838 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,841 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,844 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,846 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:10:31,848 creating build/lib/omicverse/external/scMulan/model 2026-03-27T01:10:31,849 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:10:31,851 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:10:31,855 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T01:10:31,855 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:10:31,857 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:10:31,860 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:31,861 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:31,864 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,865 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,867 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,869 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,872 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,874 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,876 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,877 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,879 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:10:31,882 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:10:31,883 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:10:31,885 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:10:31,886 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:10:31,890 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:31,891 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:31,893 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:31,895 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:31,896 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:31,898 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:31,900 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:31,904 creating build/lib/omicverse/external/STT/pl 2026-03-27T01:10:31,905 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:10:31,908 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:10:31,912 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:10:31,914 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:10:31,917 creating build/lib/omicverse/external/STT/tl 2026-03-27T01:10:31,918 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:10:31,921 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:10:31,924 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:10:31,927 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:10:31,930 creating build/lib/omicverse/external/nocd/nn 2026-03-27T01:10:31,931 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:10:31,934 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:10:31,936 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:10:31,938 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:10:31,941 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T01:10:31,943 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:10:31,945 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:10:31,948 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:10:31,950 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:31,952 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:31,955 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,957 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,959 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,961 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,964 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,967 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,970 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,973 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,976 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,978 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,981 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,984 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,986 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,990 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,993 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,995 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:31,997 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:32,000 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:32,002 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:32,004 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:10:32,005 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:10:32,008 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:10:32,010 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:10:32,012 creating build/lib/omicverse/external/single/arboreto 2026-03-27T01:10:32,013 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:10:32,015 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:10:32,018 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:10:32,020 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:10:32,022 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:10:32,023 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:10:32,025 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:10:32,026 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:10:32,029 creating build/lib/omicverse/external/commot/plotting 2026-03-27T01:10:32,030 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:10:32,033 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:10:32,036 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:10:32,038 creating build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,039 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,042 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,043 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,046 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,048 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:10:32,050 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,051 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,053 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,056 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,059 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,061 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:32,063 creating build/lib/omicverse/external/commot/tools 2026-03-27T01:10:32,064 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:10:32,067 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:10:32,070 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:10:32,073 creating build/lib/omicverse/external/space/cell2location 2026-03-27T01:10:32,075 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:10:32,077 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:10:32,079 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,080 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,082 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,084 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,086 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,089 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,091 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,092 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,095 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:10:32,098 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,099 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,101 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,103 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,105 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,108 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:32,110 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:32,111 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:32,113 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:32,115 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:32,117 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:32,119 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:10:32,120 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:10:32,122 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:10:32,125 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:10:32,127 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:32,128 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:32,130 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:32,132 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:10:32,133 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:10:32,135 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:10:32,137 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:10:32,140 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,141 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,143 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,146 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,148 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,151 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:32,153 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:32,154 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:32,156 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:32,159 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:32,161 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:32,162 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:32,165 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:32,167 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:32,169 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:32,170 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:32,173 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:32,174 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:32,177 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,178 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,181 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,183 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,185 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,187 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:32,189 creating build/lib/omicverse/external/spaco/external 2026-03-27T01:10:32,190 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:10:32,192 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:10:32,195 creating build/lib/omicverse/external/CAST/model 2026-03-27T01:10:32,196 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:10:32,198 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:10:32,200 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:10:32,202 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,203 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,205 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,208 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,210 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,212 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,214 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:10:32,217 creating build/lib/omicverse/external/datacollect/config 2026-03-27T01:10:32,218 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:10:32,220 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:10:32,223 creating build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,224 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,226 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,228 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,230 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,233 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,235 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,238 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,240 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,241 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,244 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,246 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,248 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,250 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,252 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,254 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,257 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,259 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,263 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,266 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,269 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,271 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,274 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,276 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,278 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,280 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,282 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,284 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,287 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,289 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,291 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,294 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,296 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,298 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,300 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:10:32,304 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,305 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,307 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,310 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,312 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,315 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,317 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,319 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,322 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,324 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,326 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,329 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,331 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,334 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,336 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,338 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,340 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,343 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,345 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,348 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,350 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,353 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,355 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:10:32,357 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:32,358 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:32,361 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:32,364 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:32,367 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:32,370 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,371 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,374 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,376 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,378 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,380 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,383 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,385 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,386 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,389 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:32,391 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,392 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,395 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,398 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,400 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,402 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,404 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,406 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,409 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:32,411 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,412 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,414 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,417 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,419 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,421 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,424 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,426 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:32,428 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,429 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,431 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,434 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,436 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,438 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,440 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:10:32,443 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T01:10:32,444 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:10:32,447 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:10:32,449 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:10:32,450 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:10:32,452 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:10:32,454 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,455 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,457 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,459 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,461 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,462 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:10:32,466 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,467 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,469 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,471 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,473 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,475 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,477 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:10:32,481 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,482 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,484 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,487 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,489 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,491 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,494 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,496 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,498 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,501 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,503 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,505 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,507 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,509 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,511 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,513 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,515 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,517 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,519 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:32,522 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,523 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,525 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,527 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,529 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,531 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,534 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,536 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,537 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,539 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,541 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,543 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:32,545 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:10:32,546 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:10:32,549 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:10:32,551 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:10:32,553 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,554 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,557 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,559 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,562 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,565 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,568 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,571 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,573 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:10:32,575 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,576 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,578 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,580 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,582 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,584 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:10:32,586 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:10:32,587 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:10:32,589 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:10:32,592 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:10:32,594 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,595 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,598 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,600 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,602 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,604 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,606 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:32,608 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:10:32,609 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:10:32,612 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:10:32,614 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:10:32,615 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:10:32,618 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:10:32,620 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T01:10:32,621 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:10:32,623 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:10:32,625 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:10:32,628 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:10:32,630 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,631 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,633 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,635 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,638 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,639 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,641 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,643 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,646 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,648 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,650 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,652 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,654 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:32,656 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,657 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,659 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,662 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,664 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,666 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:32,669 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,670 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,672 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,675 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,678 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,680 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,682 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,686 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,688 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,692 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,693 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:32,696 creating build/lib/omicverse/io/single 2026-03-27T01:10:32,697 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T01:10:32,700 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T01:10:32,702 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T01:10:32,704 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T01:10:32,706 creating build/lib/omicverse/io/general 2026-03-27T01:10:32,707 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T01:10:32,709 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T01:10:32,711 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T01:10:32,714 creating build/lib/omicverse/io/spatial 2026-03-27T01:10:32,715 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T01:10:32,718 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T01:10:32,721 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T01:10:32,724 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T01:10:32,726 creating build/lib/omicverse/io/bulk 2026-03-27T01:10:32,728 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T01:10:32,730 creating build/lib/omicverse/llm/dr 2026-03-27T01:10:32,732 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,734 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,737 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,739 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,742 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,744 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T01:10:32,747 creating build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,748 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,752 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,755 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,760 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,764 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,769 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,772 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,776 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,779 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,782 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,785 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,787 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:10:32,792 creating build/lib/omicverse/llm/CellPLM 2026-03-27T01:10:32,793 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T01:10:32,797 creating build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:32,798 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:32,802 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:32,805 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:32,807 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:32,809 creating build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,810 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,813 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,815 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,817 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,818 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,820 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:10:32,823 creating build/lib/omicverse/llm/utils 2026-03-27T01:10:32,824 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T01:10:32,826 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T01:10:32,829 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T01:10:32,831 creating build/lib/omicverse/llm/domain_research 2026-03-27T01:10:32,831 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T01:10:32,834 creating build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,835 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,837 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,839 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,841 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,843 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,845 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:10:32,847 creating build/lib/omicverse/llm/dr/write 2026-03-27T01:10:32,848 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:10:32,850 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:10:32,852 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:10:32,854 creating build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,855 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,857 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,860 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,861 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,864 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:10:32,866 creating build/lib/omicverse/llm/dr/verify 2026-03-27T01:10:32,867 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T01:10:32,869 creating build/lib/omicverse/llm/dr/research 2026-03-27T01:10:32,870 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:10:32,872 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:10:32,874 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:10:32,876 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:10:32,877 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:10:32,880 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:10:32,883 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,884 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,886 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,888 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,890 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,892 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,895 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,896 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:10:32,898 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:10:32,899 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:10:32,902 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:10:32,904 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:10:32,905 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:10:32,907 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:10:32,909 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,910 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,912 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,915 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,917 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,919 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:10:32,922 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:10:32,922 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:10:32,925 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:10:32,926 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:10:32,928 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:10:32,931 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,932 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,934 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,936 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,938 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,940 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:32,943 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:10:32,944 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:10:32,946 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:10:32,948 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:10:32,950 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:10:32,951 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:10:32,953 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:10:32,955 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:10:32,958 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,958 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,961 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,963 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,965 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,967 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,969 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:10:32,971 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:10:32,972 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:10:32,974 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:10:32,976 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:10:32,977 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:10:32,979 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:10:32,981 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:10:32,983 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,984 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,986 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,988 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,990 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,992 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,995 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,997 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:32,999 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,000 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,003 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,006 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,008 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,009 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,011 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:10:33,014 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,015 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,017 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,019 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,022 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,024 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:10:33,026 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:10:33,027 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:10:33,029 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:10:33,031 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:10:33,033 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:10:33,034 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:10:33,037 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:10:33,039 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:33,039 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:33,042 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:33,044 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T01:10:33,045 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T01:10:33,047 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:10:33,048 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:10:33,050 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,051 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,054 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,056 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,058 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,061 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:10:33,063 creating build/lib/omicverse/single/templates 2026-03-27T01:10:33,064 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T01:10:33,066 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T01:10:33,069 creating build/lib/omicverse/jarvis/memory 2026-03-27T01:10:33,070 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:10:33,072 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:10:33,074 creating build/lib/omicverse/jarvis/gateway 2026-03-27T01:10:33,075 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:10:33,078 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:10:33,079 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:10:33,082 creating build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,083 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,085 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,087 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,089 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,091 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,092 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,094 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:10:33,097 creating build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,098 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,101 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,104 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,106 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,110 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,112 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,115 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:10:33,118 creating build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,119 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,121 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,123 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,126 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,128 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,130 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,132 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,135 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,136 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:33,139 creating build/lib/omicverse/utils/harness 2026-03-27T01:10:33,140 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,142 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,145 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,147 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,150 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,152 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,154 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T01:10:33,157 creating build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,157 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,160 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,162 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,165 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,167 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,170 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,172 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,175 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,177 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,179 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,182 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,184 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,187 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:10:33,190 creating build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,191 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,193 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,195 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,198 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,200 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,202 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,205 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,208 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,210 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,212 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,215 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,217 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,219 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,221 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,224 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:10:33,227 creating build/lib/omicverse/pp/experimental 2026-03-27T01:10:33,228 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:10:33,230 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:10:33,232 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:10:33,235 creating build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,236 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,237 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,239 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,241 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,243 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,245 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,248 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,249 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:10:33,252 creating build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,253 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,255 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,257 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,259 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,262 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:10:33,264 creating build/lib/omicverse/bulk/_alignment 2026-03-27T01:10:33,265 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T01:10:33,268 running egg_info 2026-03-27T01:10:33,279 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:10:33,296 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:10:33,298 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:10:33,307 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:10:33,308 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:10:33,485 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:33,545 reading manifest template 'MANIFEST.in' 2026-03-27T01:10:34,388 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:10:35,661 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:10:36,100 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:10:40,246 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:10:40,718 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:10:41,182 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:10:41,625 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:10:42,048 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:10:42,484 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:10:42,917 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:10:42,920 no previously-included directories found matching '.git' 2026-03-27T01:10:42,923 no previously-included directories found matching '.github' 2026-03-27T01:10:42,925 no previously-included directories found matching '.claude' 2026-03-27T01:10:42,928 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:10:42,931 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:10:42,934 no previously-included directories found matching '.vscode' 2026-03-27T01:10:42,937 no previously-included directories found matching 'docs' 2026-03-27T01:10:42,939 no previously-included directories found matching 'tests' 2026-03-27T01:10:42,942 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:10:42,944 no previously-included directories found matching 'READMEM' 2026-03-27T01:10:42,947 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:10:42,950 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:10:42,953 no previously-included directories found matching 'tmp' 2026-03-27T01:10:42,955 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:10:42,958 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:10:42,965 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:10:42,972 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:10:42,978 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:10:42,979 adding license file 'LICENSE' 2026-03-27T01:10:43,046 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:10:43,142 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T01:10:43,144 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T01:10:43,149 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T01:10:43,152 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T01:10:43,223 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T01:10:43,225 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:10:43,228 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T01:10:43,230 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T01:10:43,232 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T01:10:43,235 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T01:10:43,237 creating build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,238 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,241 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,244 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,256 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,270 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:10:43,282 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T01:10:43,284 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:10:43,286 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:10:43,289 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:10:43,292 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:44,110 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:44,182 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:44,185 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:44,188 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:44,191 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:10:44,193 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:44,195 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:44,200 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:44,204 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:44,204 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:44,208 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:44,214 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:44,218 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:10:44,220 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,221 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,224 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,227 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,229 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,232 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,235 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,237 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,240 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,243 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,245 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,248 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,250 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:10:44,253 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:44,254 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:44,271 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:44,291 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:44,300 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:44,301 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:44,344 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:44,393 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:44,423 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:44,441 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:44,442 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:44,680 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:44,684 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:44,691 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:44,697 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:44,699 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:44,702 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:10:44,704 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:10:44,705 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:10:44,708 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:44,730 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:44,747 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T01:10:44,749 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T01:10:44,751 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T01:10:44,754 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T01:10:44,756 creating build/lib/omicverse/single/templates/img 2026-03-27T01:10:44,757 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T01:10:44,759 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:10:44,762 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:10:44,766 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:10:44,769 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T01:10:44,872 installing to build/bdist.linux-armv7l/wheel 2026-03-27T01:10:44,873 running install 2026-03-27T01:10:44,897 running install_lib 2026-03-27T01:10:44,903 creating build/bdist.linux-armv7l/wheel 2026-03-27T01:10:44,906 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T01:10:44,908 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T01:10:44,909 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,912 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,915 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,917 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,920 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T01:10:44,922 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,924 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,926 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,929 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,931 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,933 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,936 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,938 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,941 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,943 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,945 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,948 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:10:44,951 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T01:10:44,952 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:10:44,954 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:10:44,956 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:10:44,958 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:10:44,961 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:10:44,963 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,965 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:10:44,968 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T01:10:44,969 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:10:44,971 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:10:44,973 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:10:44,976 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T01:10:44,977 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:10:44,980 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:10:44,995 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:10:45,006 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:10:45,009 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:10:45,021 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:10:45,097 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:10:45,103 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T01:10:45,104 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T01:10:45,105 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,108 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,109 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,112 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,114 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,116 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:10:45,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T01:10:45,120 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,122 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,125 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,127 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,130 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,132 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,134 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,137 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,139 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,141 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:10:45,144 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T01:10:45,145 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:10:45,148 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:10:45,150 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:10:45,152 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:10:45,155 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:10:45,158 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T01:10:45,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T01:10:45,161 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:10:45,163 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:10:45,165 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:10:45,168 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:10:45,171 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T01:10:45,172 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:45,174 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:45,176 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:45,621 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:10:45,663 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T01:10:45,664 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:10:45,666 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:10:45,669 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:10:45,671 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T01:10:45,673 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,675 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,677 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,680 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,682 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,684 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,686 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,689 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,691 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,693 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,696 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,698 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,700 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,702 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,704 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,706 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:10:45,709 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T01:10:45,711 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,713 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,715 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,718 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,720 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,721 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,724 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,727 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,729 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,731 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,734 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,736 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,738 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:10:45,741 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T01:10:45,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T01:10:45,745 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,747 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,749 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,752 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,754 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,757 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:45,758 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:45,760 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:10:45,762 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,765 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:45,766 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:45,769 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:45,771 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:10:45,774 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,776 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:10:45,778 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:10:45,781 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:10:45,783 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T01:10:45,785 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:10:45,787 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:10:45,789 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:10:45,792 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:10:45,794 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T01:10:45,796 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,798 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,800 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,803 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,806 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,808 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:10:45,811 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T01:10:45,812 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,814 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,817 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,820 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,823 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,825 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,828 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:10:45,831 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T01:10:45,832 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T01:10:45,834 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:10:45,837 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:10:45,840 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:10:45,842 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:10:45,845 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T01:10:45,846 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:10:45,848 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:10:45,851 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:10:45,854 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:10:45,856 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T01:10:45,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T01:10:45,859 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:10:45,862 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:10:45,864 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:10:45,867 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T01:10:45,868 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,870 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,872 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,875 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,877 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,879 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,881 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:10:45,884 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T01:10:45,885 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:10:45,888 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:10:45,890 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:10:45,893 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:10:45,895 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T01:10:45,897 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T01:10:45,901 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:10:45,904 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:10:45,906 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:10:45,908 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:10:45,910 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,913 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,915 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,918 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T01:10:45,919 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:10:45,922 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:10:45,924 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:10:45,926 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,928 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:10:45,931 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T01:10:45,932 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:10:45,935 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:10:45,937 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:10:45,939 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:10:45,941 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:10:45,944 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T01:10:45,945 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:10:45,948 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:10:45,953 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:10:45,955 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:10:45,958 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:10:45,960 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T01:10:45,961 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,963 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,966 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T01:10:45,967 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:10:45,969 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:10:45,972 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:10:45,974 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:10:45,976 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:10:45,978 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,980 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,983 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,985 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,987 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,990 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,992 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:10:45,995 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T01:10:45,996 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:10:45,998 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:10:46,000 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:10:46,003 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T01:10:46,004 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:10:46,006 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:10:46,008 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:10:46,010 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:10:46,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,014 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,016 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,018 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,020 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,022 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,025 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,028 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,030 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,032 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,034 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,036 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,038 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,040 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,043 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,045 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,047 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,049 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,051 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:10:46,054 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T01:10:46,056 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:10:46,058 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:10:46,061 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:10:46,063 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T01:10:46,065 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T01:10:46,067 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:10:46,069 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:10:46,072 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:10:46,074 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:10:46,077 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T01:10:46,078 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,080 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,083 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,085 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,087 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,089 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,091 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,094 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,096 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,098 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,101 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,103 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:10:46,106 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T01:10:46,107 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:10:46,110 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:10:46,112 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:10:46,114 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T01:10:46,116 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T01:10:46,117 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T01:10:46,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T01:10:46,120 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:46,122 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:46,125 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:46,128 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:10:46,133 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:46,134 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:46,137 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:10:46,140 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:10:46,142 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:10:46,144 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:10:46,147 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T01:10:46,148 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:10:46,151 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:10:46,154 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:10:46,156 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T01:10:46,157 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:10:46,159 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:10:46,161 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:10:46,165 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:10:46,167 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:10:46,169 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,170 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,172 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,174 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,177 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,179 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:10:46,182 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T01:10:46,183 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:10:46,186 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:10:46,189 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:10:46,191 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T01:10:46,193 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T01:10:46,194 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,196 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,198 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,201 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,203 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,204 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:10:46,207 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T01:10:46,209 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T01:10:46,210 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,211 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,213 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,216 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,218 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,220 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,222 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,224 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,226 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:10:46,229 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,230 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,233 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,235 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,236 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,239 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:10:46,241 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:46,242 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:46,244 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:46,247 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:46,249 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:10:46,251 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:10:46,254 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T01:10:46,255 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:10:46,258 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:10:46,260 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:10:46,262 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:46,263 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:46,266 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:10:46,268 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T01:10:46,269 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:10:46,271 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:10:46,274 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:10:46,276 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T01:10:46,277 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,279 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,282 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:46,283 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:46,285 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:46,288 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:10:46,290 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:46,291 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:46,294 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:46,296 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:10:46,299 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:46,300 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:46,302 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:46,304 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:10:46,306 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,309 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,312 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,313 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,316 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,318 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,321 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,322 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:10:46,324 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,326 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:10:46,328 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:10:46,330 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T01:10:46,331 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:10:46,333 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:10:46,335 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:10:46,337 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:10:46,340 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T01:10:46,341 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:10:46,344 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:10:46,346 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:10:46,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T01:10:46,350 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:10:46,354 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:10:46,357 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T01:10:46,358 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,360 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,363 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,365 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,368 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,370 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,372 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,375 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,377 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,380 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,382 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:10:46,385 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T01:10:46,386 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T01:10:46,387 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:10:46,389 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:10:46,392 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,394 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,395 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,397 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,399 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,402 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,404 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,406 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,409 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:10:46,411 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T01:10:46,412 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:10:46,414 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:10:46,415 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:10:46,419 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,420 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,422 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,424 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,426 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,428 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:10:46,431 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T01:10:46,432 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T01:10:46,433 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:10:46,436 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:10:46,438 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:10:46,439 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,442 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,444 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,446 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,449 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,451 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,453 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:10:46,456 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T01:10:46,457 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,462 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,465 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,469 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,472 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,477 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,482 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:10:46,484 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T01:10:46,485 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,488 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,489 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,492 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,494 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,496 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,499 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,502 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,504 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,506 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,508 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,510 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,513 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,515 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,518 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:10:46,521 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T01:10:46,522 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:10:46,525 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:10:46,528 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:10:46,530 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T01:10:46,532 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,534 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,537 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,539 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,542 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,544 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,546 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:10:46,550 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T01:10:46,551 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:10:46,554 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:10:46,557 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:10:46,560 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T01:10:46,561 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:10:46,566 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:10:46,569 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T01:10:46,570 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:10:46,574 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T01:10:46,575 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,579 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,582 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,584 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,587 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,590 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,593 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,596 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,598 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,601 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,604 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,607 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:10:46,610 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:10:46,614 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T01:10:46,615 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,617 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,619 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,621 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,623 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,625 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:10:46,628 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T01:10:46,629 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:10:46,631 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:10:46,633 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:10:46,635 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:10:46,638 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T01:10:46,639 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,642 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,644 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,646 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,649 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,651 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,653 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,655 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,657 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,660 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,662 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,664 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T01:10:46,665 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:10:46,668 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:10:46,670 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:10:46,672 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:10:46,674 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,676 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,679 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,681 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,684 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,686 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,688 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,691 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,693 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,696 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,698 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,701 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,702 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,705 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,708 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,710 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,712 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,715 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,717 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,719 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,722 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:10:46,724 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,727 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,729 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,731 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,734 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,736 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,739 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,744 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,746 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,748 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,751 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,753 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,756 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,759 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,762 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:10:46,764 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,766 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,768 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,771 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,772 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,774 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,776 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,778 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,782 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,785 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,787 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:10:46,789 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,792 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,793 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,795 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,798 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,800 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,803 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,805 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:10:46,806 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:10:46,809 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T01:10:46,810 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,813 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,815 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,818 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,820 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,823 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,825 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,827 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,830 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,832 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,834 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,836 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,839 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,841 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,843 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,845 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,848 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,850 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,852 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,855 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,857 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,859 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:10:46,861 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:10:46,864 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T01:10:46,866 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:10:46,868 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T01:10:46,869 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:10:46,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:46,875 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:46,885 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:46,886 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:46,911 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:46,940 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:10:46,964 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:46,973 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:10:46,981 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:10:46,983 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T01:10:46,985 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:10:46,987 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:10:46,989 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T01:10:46,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:46,993 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:46,996 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:46,999 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,001 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,003 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,006 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,009 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,011 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,015 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,018 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,020 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,022 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,025 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,027 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,029 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,032 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,035 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,037 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:10:47,040 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,041 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,044 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,046 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,048 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,051 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,054 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,056 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,059 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,061 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,063 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,065 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:10:47,067 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:10:47,069 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:10:47,072 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:10:47,074 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:10:47,076 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:10:47,079 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:10:47,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,083 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,086 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,088 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,090 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,093 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,095 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:10:47,098 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:10:47,100 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T01:10:47,102 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,104 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,107 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,110 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,112 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,114 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,117 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,119 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:10:47,123 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T01:10:47,124 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,127 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,129 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,132 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,134 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,136 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,138 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,140 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,142 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,144 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,147 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T01:10:47,148 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:10:47,151 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:10:47,153 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:10:47,156 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,158 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,160 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,162 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,164 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,167 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,170 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T01:10:47,172 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,174 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,176 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,179 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,182 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,186 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,189 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,191 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:10:47,193 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,196 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T01:10:47,198 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:10:47,200 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:10:47,202 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:10:47,204 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:10:47,206 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:10:47,208 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,210 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,213 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,215 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:10:47,218 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T01:10:47,219 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:10:47,222 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:10:47,224 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:10:47,227 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T01:10:47,228 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,231 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,233 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,235 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,237 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,240 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,244 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,246 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:10:47,249 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T01:10:47,251 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,252 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,255 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,258 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,260 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,263 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,265 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:10:47,268 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T01:10:47,269 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:10:47,272 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:10:47,275 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T01:10:47,276 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:10:47,279 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:10:47,281 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T01:10:47,283 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:10:47,285 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:10:47,288 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:10:47,290 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:10:47,292 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T01:10:47,295 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T01:10:47,296 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,299 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,301 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,304 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,307 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,310 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,313 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,316 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,318 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:10:47,322 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T01:10:47,324 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,327 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,330 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,334 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,337 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,340 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,344 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,347 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,352 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,355 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,358 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:10:47,361 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T01:10:47,365 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T01:10:47,367 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,370 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,372 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,375 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,379 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,382 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,385 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:10:47,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T01:10:47,390 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,393 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,396 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,399 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,402 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,405 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:10:47,409 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T01:10:47,410 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:10:47,414 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:10:47,416 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:10:47,419 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:10:47,421 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:10:47,424 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T01:10:47,426 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:10:47,428 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:10:47,431 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:10:47,434 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T01:10:47,436 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,438 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,440 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,442 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,445 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,448 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:47,449 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:47,460 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:47,554 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:10:47,558 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,560 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,562 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,565 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,567 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,569 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,572 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,573 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:10:47,575 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T01:10:47,577 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,578 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,581 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,584 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,587 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,588 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:10:47,591 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,592 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,595 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,597 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,600 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,606 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,608 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,610 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,614 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,617 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,620 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,622 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:10:47,625 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T01:10:47,626 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,628 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,630 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,633 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,636 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,638 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,641 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,644 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,648 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:10:47,650 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:47,653 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T01:10:47,654 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:10:47,658 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:10:47,660 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:10:47,662 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T01:10:47,663 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T01:10:47,664 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:10:47,667 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:10:47,669 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:10:47,671 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:10:47,674 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T01:10:47,675 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:10:47,676 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:10:47,678 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:10:47,680 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T01:10:47,681 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:10:47,684 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:10:47,687 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:10:47,689 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:10:47,691 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T01:10:47,693 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T01:10:47,694 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T01:10:47,696 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:47,700 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T01:10:47,701 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T01:10:47,702 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,705 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T01:10:47,706 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:10:47,708 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:10:47,711 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:10:47,713 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T01:10:47,714 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:10:47,716 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:10:47,718 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:10:47,720 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:10:47,722 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:10:47,724 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T01:10:47,725 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T01:10:47,727 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,730 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T01:10:47,731 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:10:47,733 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:10:47,735 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:10:47,737 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,739 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,741 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,743 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:10:47,745 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T01:10:47,746 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:10:47,749 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:10:47,751 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:47,754 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:47,757 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T01:10:47,758 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,761 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,764 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,765 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,767 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,769 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,771 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,774 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,777 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,779 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:10:47,781 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,784 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,787 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,790 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,793 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,796 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,798 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,801 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,803 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,805 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:10:47,808 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T01:10:47,810 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T01:10:47,811 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:10:47,813 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:10:47,815 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T01:10:47,816 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:10:47,819 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:10:47,821 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,822 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,825 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,827 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,829 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,832 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:10:47,834 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T01:10:47,835 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:10:47,837 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:10:47,839 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:10:47,841 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:10:47,844 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,845 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,847 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,849 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,852 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,854 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:10:47,857 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T01:10:47,858 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:10:47,860 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:10:47,862 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:10:47,864 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T01:10:47,865 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:10:47,867 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:10:47,869 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:10:47,872 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,873 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,876 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,878 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,880 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,882 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,884 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:10:47,887 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T01:10:47,888 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:10:47,890 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:10:47,892 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T01:10:47,893 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:10:47,895 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:10:47,897 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:10:47,899 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T01:10:47,901 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:47,905 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:47,909 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T01:10:47,911 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,912 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,914 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,916 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,919 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,921 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,924 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,926 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:10:47,927 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,929 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,932 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,934 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,940 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,942 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T01:10:47,944 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T01:10:47,946 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,949 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,951 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:10:47,954 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T01:10:47,956 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T01:10:47,958 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,961 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,965 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,967 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,969 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,972 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:10:47,974 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:47,978 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,979 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,982 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,984 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,987 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,989 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:10:47,991 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:47,994 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T01:10:47,996 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:10:47,999 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:10:48,001 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:10:48,004 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T01:10:48,005 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:10:48,009 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:10:48,011 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:48,013 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:48,016 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:48,017 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:48,020 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:48,044 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:48,066 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:10:48,068 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:48,070 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:10:48,073 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,078 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T01:10:48,079 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:10:48,082 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:10:48,086 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:10:48,088 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,136 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,139 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,144 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,149 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T01:10:48,151 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T01:10:48,153 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T01:10:48,156 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T01:10:48,160 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T01:10:48,161 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T01:10:48,164 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,171 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T01:10:48,173 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,177 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,179 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,183 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,186 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,190 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,194 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:10:48,197 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,200 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,203 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,207 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,210 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:10:48,212 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,216 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:10:48,220 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:48,223 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:48,227 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T01:10:48,229 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,232 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,235 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,238 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,241 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,244 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,247 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,250 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,253 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,255 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,258 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,261 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,264 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,267 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,269 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,272 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,275 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,278 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,280 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,283 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,285 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,288 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,290 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,292 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,295 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,298 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,301 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,303 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,306 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,308 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,315 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,318 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,321 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,324 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,326 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,329 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,332 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T01:10:48,333 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,335 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,337 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,340 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,343 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T01:10:48,344 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:10:48,346 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:10:48,348 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:10:48,351 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:10:48,354 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,356 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:10:48,358 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,360 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,363 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,366 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,368 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,370 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,375 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,377 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,380 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:10:48,382 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:48,385 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T01:10:48,386 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,388 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,389 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,392 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,394 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,396 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,398 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,400 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,402 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,404 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:10:48,406 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T01:10:48,407 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,410 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,412 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,415 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,417 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,419 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,421 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,424 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,426 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:10:48,428 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T01:10:48,429 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,431 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,434 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,436 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,439 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,442 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,444 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,447 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,449 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,452 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,454 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,456 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,458 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,461 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:10:48,463 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T01:10:48,464 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,467 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T01:10:48,468 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:10:48,471 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:10:48,473 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,475 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,478 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,479 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,482 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,484 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,486 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,490 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T01:10:48,491 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:10:48,494 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:10:48,496 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:10:48,498 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T01:10:48,499 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,502 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,504 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,505 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,507 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,509 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,511 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:10:48,513 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,515 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,517 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,519 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,521 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,524 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,526 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:10:48,529 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T01:10:48,530 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,533 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,536 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,539 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,542 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,545 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,549 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:10:48,552 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T01:10:48,553 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,556 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,560 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,564 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T01:10:48,565 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,567 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,570 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,572 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,575 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,577 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,580 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,582 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,585 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,586 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:10:48,589 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,591 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,593 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,595 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,599 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T01:10:48,600 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,602 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,605 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,607 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,610 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,612 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,614 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:10:48,616 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,619 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,621 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,623 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,627 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,629 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,631 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,633 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,636 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,639 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,641 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,644 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,646 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,650 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,654 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,657 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,660 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,662 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,664 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,666 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,669 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,671 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,673 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,675 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,677 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,680 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T01:10:48,681 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,684 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,686 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,689 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,691 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,693 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,696 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,698 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,701 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,704 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,706 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,708 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,711 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:10:48,713 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,715 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:10:48,719 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T01:10:48,720 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,722 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,724 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,727 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,729 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,731 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,734 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,737 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,739 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,741 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,744 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,746 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,748 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,750 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,753 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:10:48,756 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T01:10:48,757 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,761 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,763 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,766 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,769 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,774 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,777 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,779 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,784 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,787 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,789 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,792 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,794 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,796 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,799 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,801 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,804 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,807 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,810 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,812 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:10:48,815 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T01:10:48,816 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T01:10:48,819 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:48,822 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T01:10:48,823 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,825 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,829 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,832 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,834 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,836 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,839 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,841 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,843 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,845 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,849 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,852 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,854 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,856 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,859 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,861 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,865 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,868 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T01:10:48,869 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:10:48,871 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:10:48,874 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:10:48,876 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,880 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,881 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,884 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,886 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,888 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:10:48,891 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T01:10:48,892 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:10:48,896 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:10:48,899 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:10:48,902 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:10:48,904 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T01:10:48,905 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,907 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,909 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,911 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,913 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,915 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,917 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,919 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:10:48,921 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:10:48,923 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T01:10:48,924 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:10:48,926 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:10:48,929 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:10:48,932 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T01:10:48,933 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,937 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,940 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,943 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,947 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,950 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,954 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,956 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,959 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,963 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,965 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,968 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,971 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T01:10:48,973 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:10:48,976 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:10:48,979 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:10:48,981 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:10:48,984 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:10:48,986 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:10:48,988 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:10:48,992 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T01:10:48,994 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:48,997 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,000 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,004 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T01:10:49,005 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T01:10:49,007 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,010 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,013 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,017 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,034 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,037 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,039 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,041 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:10:49,044 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T01:10:49,045 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,048 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,050 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,052 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,055 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,057 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,059 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,062 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,064 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,067 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:10:49,069 running install_egg_info 2026-03-27T01:10:49,074 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.7-py3.11.egg-info 2026-03-27T01:10:49,089 running install_scripts 2026-03-27T01:10:49,104 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.7.dist-info/WHEEL 2026-03-27T01:10:49,107 creating '/tmp/pip-wheel-yhtkcfik/.tmp-4whyziqu/omicverse-2.0.7-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T01:10:49,110 adding 'omicverse/__init__.py' 2026-03-27T01:10:49,112 adding 'omicverse/_lazy_loader.py' 2026-03-27T01:10:49,114 adding 'omicverse/_monitor.py' 2026-03-27T01:10:49,120 adding 'omicverse/_registry.py' 2026-03-27T01:10:49,125 adding 'omicverse/_settings.py' 2026-03-27T01:10:49,129 adding 'omicverse/claw.py' 2026-03-27T01:10:49,130 adding 'omicverse/cli.py' 2026-03-27T01:10:49,132 adding 'omicverse/agent/__init__.py' 2026-03-27T01:10:49,135 adding 'omicverse/alignment/STAR.py' 2026-03-27T01:10:49,137 adding 'omicverse/alignment/__init__.py' 2026-03-27T01:10:49,139 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T01:10:49,140 adding 'omicverse/alignment/fastp.py' 2026-03-27T01:10:49,143 adding 'omicverse/alignment/featureCount.py' 2026-03-27T01:10:49,144 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T01:10:49,148 adding 'omicverse/alignment/kb_api.py' 2026-03-27T01:10:49,150 adding 'omicverse/alignment/pipeline.py' 2026-03-27T01:10:49,152 adding 'omicverse/alignment/prefetch.py' 2026-03-27T01:10:49,153 adding 'omicverse/biocontext/__init__.py' 2026-03-27T01:10:49,155 adding 'omicverse/biocontext/_client.py' 2026-03-27T01:10:49,158 adding 'omicverse/biocontext/_tools.py' 2026-03-27T01:10:49,163 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T01:10:49,166 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T01:10:49,169 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T01:10:49,171 adding 'omicverse/bulk/__init__.py' 2026-03-27T01:10:49,212 adding 'omicverse/bulk/_chm13.py' 2026-03-27T01:10:49,218 adding 'omicverse/bulk/_combat.py' 2026-03-27T01:10:49,220 adding 'omicverse/bulk/_decov.py' 2026-03-27T01:10:49,221 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T01:10:49,226 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T01:10:49,228 adding 'omicverse/bulk/_network.py' 2026-03-27T01:10:49,230 adding 'omicverse/bulk/_tcga.py' 2026-03-27T01:10:49,232 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T01:10:49,234 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T01:10:49,237 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T01:10:49,238 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T01:10:49,241 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T01:10:49,246 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T01:10:49,250 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T01:10:49,253 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T01:10:49,255 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T01:10:49,257 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T01:10:49,260 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T01:10:49,261 adding 'omicverse/data_files/README.md' 2026-03-27T01:10:49,302 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T01:10:49,305 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T01:10:49,822 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T01:10:49,853 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T01:10:49,856 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T01:10:49,859 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T01:10:49,882 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T01:10:49,924 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T01:10:49,964 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T01:10:49,970 adding 'omicverse/datasets/__init__.py' 2026-03-27T01:10:49,976 adding 'omicverse/datasets/_datasets.py' 2026-03-27T01:10:49,977 adding 'omicverse/datasets/_signatures.py' 2026-03-27T01:10:49,980 adding 'omicverse/external/__init__.py' 2026-03-27T01:10:49,982 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T01:10:49,984 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T01:10:49,985 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T01:10:49,988 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T01:10:49,990 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T01:10:49,992 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T01:10:49,996 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T01:10:49,998 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T01:10:50,000 adding 'omicverse/external/CAST/main.py' 2026-03-27T01:10:50,003 adding 'omicverse/external/CAST/utils.py' 2026-03-27T01:10:50,004 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T01:10:50,006 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T01:10:50,007 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T01:10:50,009 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T01:10:50,011 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T01:10:50,012 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T01:10:50,014 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T01:10:50,016 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T01:10:50,019 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T01:10:50,021 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T01:10:50,024 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T01:10:50,026 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T01:10:50,028 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T01:10:50,030 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T01:10:50,032 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T01:10:50,035 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T01:10:50,037 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T01:10:50,040 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T01:10:50,042 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T01:10:50,043 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T01:10:50,045 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T01:10:50,047 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T01:10:50,049 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T01:10:50,051 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T01:10:50,052 adding 'omicverse/external/GraphST/model.py' 2026-03-27T01:10:50,054 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T01:10:50,055 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T01:10:50,057 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T01:10:50,059 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T01:10:50,060 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T01:10:50,062 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T01:10:50,063 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T01:10:50,065 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T01:10:50,066 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T01:10:50,067 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T01:10:50,069 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T01:10:50,070 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T01:10:50,072 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T01:10:50,074 adding 'omicverse/external/PROST/layers.py' 2026-03-27T01:10:50,075 adding 'omicverse/external/PROST/model.py' 2026-03-27T01:10:50,077 adding 'omicverse/external/PROST/plot.py' 2026-03-27T01:10:50,081 adding 'omicverse/external/PROST/utils.py' 2026-03-27T01:10:50,082 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T01:10:50,085 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T01:10:50,086 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T01:10:50,088 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T01:10:50,111 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T01:10:50,114 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T01:10:50,116 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T01:10:50,117 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T01:10:50,119 adding 'omicverse/external/SEACells/core.py' 2026-03-27T01:10:50,122 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T01:10:50,125 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T01:10:50,127 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T01:10:50,128 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T01:10:50,130 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T01:10:50,134 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T01:10:50,135 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T01:10:50,137 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T01:10:50,139 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T01:10:50,140 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T01:10:50,141 adding 'omicverse/external/SEACells/version.py' 2026-03-27T01:10:50,143 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T01:10:50,144 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T01:10:50,146 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T01:10:50,147 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T01:10:50,149 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T01:10:50,151 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T01:10:50,153 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T01:10:50,156 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T01:10:50,157 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T01:10:50,159 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T01:10:50,161 adding 'omicverse/external/STT/__init__.py' 2026-03-27T01:10:50,163 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T01:10:50,166 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T01:10:50,168 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T01:10:50,170 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T01:10:50,172 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T01:10:50,173 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T01:10:50,176 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T01:10:50,177 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T01:10:50,179 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T01:10:50,181 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T01:10:50,182 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T01:10:50,184 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T01:10:50,186 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T01:10:50,188 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T01:10:50,189 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T01:10:50,191 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T01:10:50,213 adding 'omicverse/external/VIA/core.py' 2026-03-27T01:10:50,216 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T01:10:50,241 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T01:10:50,267 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T01:10:50,282 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T01:10:50,284 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T01:10:50,286 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T01:10:50,299 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T01:10:50,302 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T01:10:50,304 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T01:10:50,306 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T01:10:50,307 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T01:10:50,309 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T01:10:50,310 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T01:10:50,312 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T01:10:50,314 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T01:10:50,315 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T01:10:50,317 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T01:10:50,319 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-03-27T01:10:50,320 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-03-27T01:10:50,322 adding 'omicverse/external/bulk2single/pybayesprism/optim.py' 2026-03-27T01:10:50,324 adding 'omicverse/external/bulk2single/pybayesprism/prism.py' 2026-03-27T01:10:50,326 adding 'omicverse/external/bulk2single/pybayesprism/process_input.py' 2026-03-27T01:10:50,327 adding 'omicverse/external/bulk2single/pybayesprism/references.py' 2026-03-27T01:10:50,329 adding 'omicverse/external/bulk2single/pybayesprism/run.py' 2026-03-27T01:10:50,330 adding 'omicverse/external/bulk2single/pybayesprism/theta_post.py' 2026-03-27T01:10:51,024 adding 'omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt' 2026-03-27T01:10:51,076 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt' 2026-03-27T01:10:51,102 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt' 2026-03-27T01:10:51,106 adding 'omicverse/external/bulk2single/scSemiProfiler/__init__.py' 2026-03-27T01:10:51,110 adding 'omicverse/external/bulk2single/scSemiProfiler/fast_generator.py' 2026-03-27T01:10:51,112 adding 'omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py' 2026-03-27T01:10:51,151 adding 'omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt' 2026-03-27T01:10:51,156 adding 'omicverse/external/bulk2single/scSemiProfiler/inference.py' 2026-03-27T01:10:51,158 adding 'omicverse/external/bulk2single/scSemiProfiler/initial_setup.py' 2026-03-27T01:10:51,162 adding 'omicverse/external/bulk2single/scSemiProfiler/oldinference.py' 2026-03-27T01:10:51,164 adding 'omicverse/external/bulk2single/scSemiProfiler/representative_selection.py' 2026-03-27T01:10:51,166 adding 'omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py' 2026-03-27T01:10:51,175 adding 'omicverse/external/bulk2single/scSemiProfiler/utils.py' 2026-03-27T01:10:51,180 adding 'omicverse/external/bulk2single/scSemiProfiler/vaegan.py' 2026-03-27T01:10:51,182 adding 'omicverse/external/cellanova/__init__.py' 2026-03-27T01:10:51,184 adding 'omicverse/external/cellanova/model.py' 2026-03-27T01:10:51,185 adding 'omicverse/external/cellanova/utils.py' 2026-03-27T01:10:51,194 adding 'omicverse/external/cnmf/cnmf.py' 2026-03-27T01:10:51,197 adding 'omicverse/external/cnmf/preprocess.py' 2026-03-27T01:10:51,199 adding 'omicverse/external/commot/__init__.py' 2026-03-27T01:10:51,201 adding 'omicverse/external/commot/_optimal_transport/__init__.py' 2026-03-27T01:10:51,203 adding 'omicverse/external/commot/_optimal_transport/_cot.py' 2026-03-27T01:10:51,205 adding 'omicverse/external/commot/_optimal_transport/_unot.py' 2026-03-27T01:10:51,207 adding 'omicverse/external/commot/_optimal_transport/_unot_torch.py' 2026-03-27T01:10:51,209 adding 'omicverse/external/commot/_optimal_transport/_usot.py' 2026-03-27T01:10:51,210 adding 'omicverse/external/commot/_utils/__init__.py' 2026-03-27T01:10:51,212 adding 'omicverse/external/commot/_utils/_binarization.py' 2026-03-27T01:10:51,213 adding 'omicverse/external/commot/_utils/_clustering.py' 2026-03-27T01:10:51,216 adding 'omicverse/external/commot/_utils/_plotting.py' 2026-03-27T01:10:51,218 adding 'omicverse/external/commot/_utils/_similarity.py' 2026-03-27T01:10:51,220 adding 'omicverse/external/commot/plotting/__init__.py' 2026-03-27T01:10:51,223 adding 'omicverse/external/commot/plotting/_plotting.py' 2026-03-27T01:10:51,227 adding 'omicverse/external/commot/plotting/_streamtube.py' 2026-03-27T01:10:51,229 adding 'omicverse/external/commot/preprocessing/__init__.py' 2026-03-27T01:10:51,231 adding 'omicverse/external/commot/preprocessing/_infer_spatial.py' 2026-03-27T01:10:51,232 adding 'omicverse/external/commot/preprocessing/_ligand_receptor_database.py' 2026-03-27T01:10:51,240 adding 'omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv' 2026-03-27T01:10:51,247 adding 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'omicverse/utils/ovagent/runtime.py' 2026-03-27T01:10:57,022 adding 'omicverse/utils/ovagent/session_context.py' 2026-03-27T01:10:57,024 adding 'omicverse/utils/ovagent/subagent_controller.py' 2026-03-27T01:10:57,030 adding 'omicverse/utils/ovagent/tool_runtime.py' 2026-03-27T01:10:57,035 adding 'omicverse/utils/ovagent/turn_controller.py' 2026-03-27T01:10:57,037 adding 'omicverse/utils/ovagent/workflow.py' 2026-03-27T01:10:57,041 adding 'omicverse/utils/verifier/README.md' 2026-03-27T01:10:57,043 adding 'omicverse/utils/verifier/__init__.py' 2026-03-27T01:10:57,044 adding 'omicverse/utils/verifier/__main__.py' 2026-03-27T01:10:57,047 adding 'omicverse/utils/verifier/cli.py' 2026-03-27T01:10:57,049 adding 'omicverse/utils/verifier/data_structures.py' 2026-03-27T01:10:57,052 adding 'omicverse/utils/verifier/end_to_end_verifier.py' 2026-03-27T01:10:57,054 adding 'omicverse/utils/verifier/llm_skill_selector.py' 2026-03-27T01:10:57,057 adding 'omicverse/utils/verifier/notebook_task_extractor.py' 2026-03-27T01:10:57,059 adding 'omicverse/utils/verifier/skill_description_loader.py' 2026-03-27T01:10:57,061 adding 'omicverse/utils/verifier/skill_description_quality.py' 2026-03-27T01:10:57,069 adding 'omicverse-2.0.7.dist-info/licenses/LICENSE' 2026-03-27T01:10:57,078 adding 'omicverse-2.0.7.dist-info/METADATA' 2026-03-27T01:10:57,079 adding 'omicverse-2.0.7.dist-info/WHEEL' 2026-03-27T01:10:57,080 adding 'omicverse-2.0.7.dist-info/entry_points.txt' 2026-03-27T01:10:57,081 adding 'omicverse-2.0.7.dist-info/top_level.txt' 2026-03-27T01:10:57,101 adding 'omicverse-2.0.7.dist-info/RECORD' 2026-03-27T01:10:57,244 removing build/bdist.linux-armv7l/wheel 2026-03-27T01:10:57,701 Building wheel for omicverse (pyproject.toml): finished with status 'done' 2026-03-27T01:10:57,955 Created wheel for omicverse: filename=omicverse-2.0.7-py3-none-any.whl size=12543536 sha256=1249c8e77b514e839b76cac868270747c211af6f3fbbb0b305656d59e6149933 2026-03-27T01:10:57,956 Stored in directory: /tmp/pip-ephem-wheel-cache-o8svegjg/wheels/4b/ad/ac/dd295bc271ef3a20dd92224b8ca946539a3614e6425011daca 2026-03-27T01:10:58,035 Successfully built omicverse 2026-03-27T01:10:58,327 Removed build tracker: '/tmp/pip-build-tracker-wx3iicog'