2026-03-27T01:18:25,088 Created temporary directory: /tmp/pip-ephem-wheel-cache-ikmuwic7 2026-03-27T01:18:25,090 Created temporary directory: /tmp/pip-build-tracker-lr92rzqs 2026-03-27T01:18:25,090 Initialized build tracking at /tmp/pip-build-tracker-lr92rzqs 2026-03-27T01:18:25,091 Created build tracker: /tmp/pip-build-tracker-lr92rzqs 2026-03-27T01:18:25,091 Entered build tracker: /tmp/pip-build-tracker-lr92rzqs 2026-03-27T01:18:25,092 Created temporary directory: /tmp/pip-wheel-uj50f7xa 2026-03-27T01:18:25,095 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,649 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,650 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,650 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,651 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,652 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,652 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,653 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,653 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,654 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,654 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,655 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,655 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,656 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,656 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,657 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,657 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,658 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T01:18:25,659 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T01:18:25,659 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T01:18:25,685 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T01:18:25,703 Collecting omicverse==2.0.8 2026-03-27T01:18:25,705 Created temporary directory: /tmp/pip-unpack-9zw7nd59 2026-03-27T01:18:25,938 Downloading omicverse-2.0.8.tar.gz (11.8 MB) 2026-03-27T01:18:32,418 Added omicverse==2.0.8 from https://files.pythonhosted.org/packages/93/e8/d623c7c39f0ecffb10ab75c3c9a5f6518cbacb4b80dd62b738f7ab34a029/omicverse-2.0.8.tar.gz to build tracker '/tmp/pip-build-tracker-lr92rzqs' 2026-03-27T01:18:32,426 Created temporary directory: /tmp/pip-build-env-lrazdzq5 2026-03-27T01:18:32,430 Installing build dependencies: started 2026-03-27T01:18:32,432 Running command pip subprocess to install build dependencies 2026-03-27T01:18:33,586 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T01:18:34,015 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T01:18:34,041 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T01:18:35,782 Collecting setuptools>=61 2026-03-27T01:18:35,880 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T01:18:36,147 Collecting wheel 2026-03-27T01:18:36,162 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T01:18:38,180 Collecting Cython 2026-03-27T01:18:39,176 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T01:18:39,804 Collecting packaging>=24.0 2026-03-27T01:18:39,820 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T01:18:42,786 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T01:18:49,699 Creating /tmp/pip-build-env-lrazdzq5/overlay/local/bin 2026-03-27T01:18:49,702 changing mode of /tmp/pip-build-env-lrazdzq5/overlay/local/bin/cygdb to 755 2026-03-27T01:18:49,704 changing mode of /tmp/pip-build-env-lrazdzq5/overlay/local/bin/cython to 755 2026-03-27T01:18:49,706 changing mode of /tmp/pip-build-env-lrazdzq5/overlay/local/bin/cythonize to 755 2026-03-27T01:18:49,834 changing mode of /tmp/pip-build-env-lrazdzq5/overlay/local/bin/wheel to 755 2026-03-27T01:18:49,862 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T01:18:50,234 Installing build dependencies: finished with status 'done' 2026-03-27T01:18:50,241 Getting requirements to build wheel: started 2026-03-27T01:18:50,242 Running command Getting requirements to build wheel 2026-03-27T01:18:50,966 /tmp/pip-build-env-lrazdzq5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:18:50,966 !! 2026-03-27T01:18:50,967 ******************************************************************************** 2026-03-27T01:18:50,968 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:18:50,969 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:18:50,970 or your builds will no longer be supported. 2026-03-27T01:18:50,971 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:18:50,972 ******************************************************************************** 2026-03-27T01:18:50,973 !! 2026-03-27T01:18:50,974 corresp(dist, value, root_dir) 2026-03-27T01:18:51,260 running egg_info 2026-03-27T01:18:51,267 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:18:51,286 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:18:51,289 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:18:51,299 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:18:51,300 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:18:51,564 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:18:51,625 reading manifest template 'MANIFEST.in' 2026-03-27T01:18:52,558 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:18:53,956 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:18:54,379 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:18:58,407 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:18:58,886 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:18:59,310 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:18:59,761 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:19:00,185 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:19:00,620 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:19:01,037 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:19:01,040 no previously-included directories found matching '.git' 2026-03-27T01:19:01,044 no previously-included directories found matching '.github' 2026-03-27T01:19:01,047 no previously-included directories found matching '.claude' 2026-03-27T01:19:01,051 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:19:01,055 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:19:01,060 no previously-included directories found matching '.vscode' 2026-03-27T01:19:01,065 no previously-included directories found matching 'docs' 2026-03-27T01:19:01,070 no previously-included directories found matching 'tests' 2026-03-27T01:19:01,075 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:19:01,079 no previously-included directories found matching 'READMEM' 2026-03-27T01:19:01,084 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:19:01,090 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:19:01,094 no previously-included directories found matching 'tmp' 2026-03-27T01:19:01,099 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:19:01,104 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:19:01,113 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:19:01,125 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:19:01,135 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:19:01,136 adding license file 'LICENSE' 2026-03-27T01:19:01,214 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:01,327 Getting requirements to build wheel: finished with status 'done' 2026-03-27T01:19:01,330 Created temporary directory: /tmp/pip-modern-metadata-pi76x5p5 2026-03-27T01:19:01,332 Preparing metadata (pyproject.toml): started 2026-03-27T01:19:01,334 Running command Preparing metadata (pyproject.toml) 2026-03-27T01:19:01,967 /tmp/pip-build-env-lrazdzq5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:19:01,967 !! 2026-03-27T01:19:01,968 ******************************************************************************** 2026-03-27T01:19:01,969 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:19:01,970 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:19:01,971 or your builds will no longer be supported. 2026-03-27T01:19:01,972 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:19:01,972 ******************************************************************************** 2026-03-27T01:19:01,974 !! 2026-03-27T01:19:01,974 corresp(dist, value, root_dir) 2026-03-27T01:19:02,257 running dist_info 2026-03-27T01:19:02,269 creating /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info 2026-03-27T01:19:02,270 writing /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/PKG-INFO 2026-03-27T01:19:02,287 writing dependency_links to /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/dependency_links.txt 2026-03-27T01:19:02,289 writing entry points to /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/entry_points.txt 2026-03-27T01:19:02,298 writing requirements to /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/requires.txt 2026-03-27T01:19:02,300 writing top-level names to /tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/top_level.txt 2026-03-27T01:19:02,301 writing manifest file '/tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:02,506 reading manifest file '/tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:02,508 reading manifest template 'MANIFEST.in' 2026-03-27T01:19:03,437 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:19:05,073 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:19:05,509 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:19:09,507 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:19:09,967 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:19:10,401 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:19:10,852 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:19:11,323 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:19:11,896 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:19:12,373 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:19:12,375 no previously-included directories found matching '.git' 2026-03-27T01:19:12,377 no previously-included directories found matching '.github' 2026-03-27T01:19:12,380 no previously-included directories found matching '.claude' 2026-03-27T01:19:12,382 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:19:12,384 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:19:12,386 no previously-included directories found matching '.vscode' 2026-03-27T01:19:12,388 no previously-included directories found matching 'docs' 2026-03-27T01:19:12,390 no previously-included directories found matching 'tests' 2026-03-27T01:19:12,392 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:19:12,394 no previously-included directories found matching 'READMEM' 2026-03-27T01:19:12,397 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:19:12,399 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:19:12,401 no previously-included directories found matching 'tmp' 2026-03-27T01:19:12,403 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:19:12,405 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:19:12,410 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:19:12,415 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:19:12,419 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:19:12,420 adding license file 'LICENSE' 2026-03-27T01:19:12,475 writing manifest file '/tmp/pip-modern-metadata-pi76x5p5/omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:12,478 creating '/tmp/pip-modern-metadata-pi76x5p5/omicverse-2.0.8.dist-info' 2026-03-27T01:19:12,626 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T01:19:12,640 Source in /tmp/pip-wheel-uj50f7xa/omicverse_ed492cd6d5b9400b9ca0642f923d3a03 has version 2.0.8, which satisfies requirement omicverse==2.0.8 from https://files.pythonhosted.org/packages/93/e8/d623c7c39f0ecffb10ab75c3c9a5f6518cbacb4b80dd62b738f7ab34a029/omicverse-2.0.8.tar.gz 2026-03-27T01:19:12,642 Removed omicverse==2.0.8 from https://files.pythonhosted.org/packages/93/e8/d623c7c39f0ecffb10ab75c3c9a5f6518cbacb4b80dd62b738f7ab34a029/omicverse-2.0.8.tar.gz from build tracker '/tmp/pip-build-tracker-lr92rzqs' 2026-03-27T01:19:12,666 Created temporary directory: /tmp/pip-unpack-ryn_mhxo 2026-03-27T01:19:12,666 Building wheels for collected packages: omicverse 2026-03-27T01:19:12,671 Created temporary directory: /tmp/pip-wheel-domlv4in 2026-03-27T01:19:12,671 Destination directory: /tmp/pip-wheel-domlv4in 2026-03-27T01:19:12,673 Building wheel for omicverse (pyproject.toml): started 2026-03-27T01:19:12,675 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T01:19:13,318 /tmp/pip-build-env-lrazdzq5/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T01:19:13,318 !! 2026-03-27T01:19:13,319 ******************************************************************************** 2026-03-27T01:19:13,320 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T01:19:13,321 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T01:19:13,321 or your builds will no longer be supported. 2026-03-27T01:19:13,322 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T01:19:13,323 ******************************************************************************** 2026-03-27T01:19:13,324 !! 2026-03-27T01:19:13,324 corresp(dist, value, root_dir) 2026-03-27T01:19:13,585 running bdist_wheel 2026-03-27T01:19:13,605 running build 2026-03-27T01:19:13,605 running build_py 2026-03-27T01:19:13,612 creating build/lib/omicverse 2026-03-27T01:19:13,615 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T01:19:13,617 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T01:19:13,620 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T01:19:13,623 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T01:19:13,626 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T01:19:13,630 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T01:19:13,634 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T01:19:13,638 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,639 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,642 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,644 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,646 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,648 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,651 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,653 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,655 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,657 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:13,661 creating build/lib/omicverse/pp 2026-03-27T01:19:13,662 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,665 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,668 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,671 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,674 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,676 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,679 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,682 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,684 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,686 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,688 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,691 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,694 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,697 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,701 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,704 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,707 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,709 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,713 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,716 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,718 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,721 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,724 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T01:19:13,728 creating build/lib/omicverse/bulk2single 2026-03-27T01:19:13,729 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,732 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,735 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,738 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,741 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,744 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,747 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,750 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,753 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,756 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T01:19:13,760 creating build/lib/omicverse/agent 2026-03-27T01:19:13,761 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T01:19:13,765 creating build/lib/omicverse/utils 2026-03-27T01:19:13,767 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,769 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,773 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,776 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,780 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,784 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,787 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,791 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,794 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,797 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,800 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,802 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,806 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,812 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,814 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,817 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,819 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,822 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,825 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,828 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,830 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,833 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,836 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,839 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,842 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,845 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,848 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,852 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,854 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,857 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,860 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,863 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,867 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,869 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T01:19:13,873 creating build/lib/omicverse/bulk 2026-03-27T01:19:13,874 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,878 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,881 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,883 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,886 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,889 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,891 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,894 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,898 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,901 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,904 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T01:19:13,920 creating build/lib/omicverse/fm 2026-03-27T01:19:13,921 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T01:19:13,923 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T01:19:13,925 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T01:19:13,928 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T01:19:13,931 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T01:19:13,934 creating build/lib/omicverse/alignment 2026-03-27T01:19:13,935 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,938 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,940 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,942 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,945 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,947 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,949 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,952 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,954 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T01:19:13,958 creating build/lib/omicverse/single 2026-03-27T01:19:13,959 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T01:19:13,962 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T01:19:13,964 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T01:19:13,967 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T01:19:13,970 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T01:19:13,975 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T01:19:13,978 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T01:19:13,981 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T01:19:13,984 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T01:19:13,987 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T01:19:13,990 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T01:19:13,992 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T01:19:13,995 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T01:19:13,998 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T01:19:14,001 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T01:19:14,004 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T01:19:14,006 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T01:19:14,009 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T01:19:14,011 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T01:19:14,014 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T01:19:14,016 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T01:19:14,019 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T01:19:14,022 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T01:19:14,025 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T01:19:14,028 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T01:19:14,031 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T01:19:14,034 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T01:19:14,037 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T01:19:14,042 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T01:19:14,044 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T01:19:14,047 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T01:19:14,050 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T01:19:14,054 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T01:19:14,057 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T01:19:14,060 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T01:19:14,063 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T01:19:14,066 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T01:19:14,069 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T01:19:14,072 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T01:19:14,075 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T01:19:14,078 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T01:19:14,081 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T01:19:14,085 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T01:19:14,088 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T01:19:14,097 creating build/lib/omicverse/llm 2026-03-27T01:19:14,098 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,101 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,105 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,111 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,115 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,118 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,123 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,126 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,131 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,137 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,142 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,146 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T01:19:14,150 creating build/lib/omicverse/biocontext 2026-03-27T01:19:14,151 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T01:19:14,155 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T01:19:14,159 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T01:19:14,162 creating build/lib/omicverse/datasets 2026-03-27T01:19:14,164 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T01:19:14,169 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T01:19:14,172 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T01:19:14,175 creating build/lib/omicverse/data_files 2026-03-27T01:19:14,177 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T01:19:14,180 creating build/lib/omicverse/mcp 2026-03-27T01:19:14,181 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,184 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,187 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,190 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,192 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,194 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,196 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,199 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,203 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,207 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,210 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,213 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,216 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T01:19:14,220 creating build/lib/omicverse/external 2026-03-27T01:19:14,221 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T01:19:14,225 creating build/lib/omicverse/pl 2026-03-27T01:19:14,226 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,230 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,235 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,238 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,241 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,244 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,247 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,250 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,252 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,260 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,263 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,266 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,270 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,273 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,279 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,282 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,287 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,290 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,294 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,297 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T01:19:14,300 creating build/lib/omicverse/io 2026-03-27T01:19:14,302 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T01:19:14,305 creating build/lib/omicverse/space 2026-03-27T01:19:14,306 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T01:19:14,310 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T01:19:14,312 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T01:19:14,315 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T01:19:14,318 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T01:19:14,321 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T01:19:14,323 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T01:19:14,326 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T01:19:14,328 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T01:19:14,331 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T01:19:14,334 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T01:19:14,337 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T01:19:14,339 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T01:19:14,342 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T01:19:14,346 creating build/lib/omicverse/jarvis 2026-03-27T01:19:14,347 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,349 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,352 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,355 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,358 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,361 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,363 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,365 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,368 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,370 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,372 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,375 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T01:19:14,377 creating build/lib/omicverse/popv 2026-03-27T01:19:14,378 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,380 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,382 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,385 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,387 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,389 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T01:19:14,392 creating build/lib/omicverse/pp/experimental 2026-03-27T01:19:14,393 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:19:14,396 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:19:14,398 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T01:19:14,401 creating build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,402 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,405 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,407 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,410 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,412 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,415 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,417 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,420 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,422 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,425 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,427 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,430 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,432 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T01:19:14,436 creating build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,437 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,440 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,441 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,443 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,446 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,449 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,451 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,454 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,456 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:14,459 creating build/lib/omicverse/utils/harness 2026-03-27T01:19:14,461 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,463 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,465 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,468 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,469 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,472 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,474 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T01:19:14,477 creating build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,478 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,480 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,482 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,485 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,488 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,490 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,492 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,495 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,497 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,499 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,501 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,504 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,507 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,510 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,512 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T01:19:14,515 creating build/lib/omicverse/bulk/_alignment 2026-03-27T01:19:14,516 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T01:19:14,519 creating build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,520 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,522 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,524 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,526 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,528 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,530 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,532 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,535 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T01:19:14,537 creating build/lib/omicverse/single/templates 2026-03-27T01:19:14,538 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T01:19:14,540 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T01:19:14,543 creating build/lib/omicverse/llm/utils 2026-03-27T01:19:14,544 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T01:19:14,547 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T01:19:14,549 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T01:19:14,552 creating build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:14,553 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:14,555 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:14,558 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:14,559 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:14,561 creating build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,562 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,564 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,567 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,568 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,571 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,573 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T01:19:14,576 creating build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,576 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,579 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,581 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,582 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,584 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,586 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T01:19:14,589 creating build/lib/omicverse/llm/dr 2026-03-27T01:19:14,590 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,592 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,595 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,597 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,599 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,600 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T01:19:14,603 creating build/lib/omicverse/llm/CellPLM 2026-03-27T01:19:14,604 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T01:19:14,606 creating build/lib/omicverse/llm/domain_research 2026-03-27T01:19:14,607 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T01:19:14,609 creating build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,610 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,613 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,616 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,618 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,622 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,624 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,626 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,630 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,633 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,636 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,638 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,641 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T01:19:14,644 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,645 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,647 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,649 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,651 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,653 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,656 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,658 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:14,661 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,662 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,664 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,666 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,668 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,670 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T01:19:14,673 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:19:14,674 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:19:14,676 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T01:19:14,679 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,680 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,683 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,685 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,688 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,690 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,692 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T01:19:14,696 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:14,697 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:14,699 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:14,702 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:19:14,703 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:19:14,706 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:19:14,708 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T01:19:14,710 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,712 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,714 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,717 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,719 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,721 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T01:19:14,724 creating build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,725 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,727 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,729 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,731 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,732 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T01:19:14,734 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:19:14,735 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:19:14,738 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T01:19:14,741 creating build/lib/omicverse/llm/dr/write 2026-03-27T01:19:14,742 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:19:14,744 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:19:14,746 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T01:19:14,748 creating build/lib/omicverse/llm/dr/research 2026-03-27T01:19:14,749 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:19:14,751 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:19:14,753 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T01:19:14,755 creating build/lib/omicverse/llm/dr/verify 2026-03-27T01:19:14,756 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T01:19:14,759 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:19:14,760 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:19:14,762 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:19:14,764 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T01:19:14,767 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,768 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,770 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,772 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,775 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,777 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,780 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T01:19:14,782 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,783 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,786 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,788 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,791 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,793 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T01:19:14,796 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:19:14,797 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:19:14,799 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T01:19:14,802 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:19:14,803 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:19:14,805 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T01:19:14,807 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:19:14,808 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:19:14,810 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:19:14,812 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:19:14,814 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T01:19:14,817 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:19:14,818 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:19:14,820 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T01:19:14,822 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:19:14,823 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:19:14,826 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:19:14,828 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T01:19:14,830 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:19:14,831 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:19:14,833 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:19:14,836 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T01:19:14,838 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,839 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,842 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,844 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,846 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,848 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:14,851 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:19:14,853 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T01:19:14,855 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T01:19:14,856 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T01:19:14,859 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,860 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,863 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,865 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,868 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,870 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,872 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,874 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T01:19:14,877 creating build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,879 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,882 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,885 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,888 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,891 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T01:19:14,894 creating build/lib/omicverse/external/nocd 2026-03-27T01:19:14,895 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,899 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,901 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,904 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,906 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,909 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T01:19:14,912 creating build/lib/omicverse/external/cytotrace2 2026-03-27T01:19:14,913 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:19:14,916 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:19:14,919 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T01:19:14,922 creating build/lib/omicverse/external/scSLAT 2026-03-27T01:19:14,923 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:19:14,926 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:19:14,928 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T01:19:14,932 creating build/lib/omicverse/external/spaceflow 2026-03-27T01:19:14,934 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:19:14,937 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:19:14,939 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T01:19:14,943 creating build/lib/omicverse/external/bulk2single 2026-03-27T01:19:14,945 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T01:19:14,948 creating build/lib/omicverse/external/tosica 2026-03-27T01:19:14,949 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T01:19:14,952 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T01:19:14,955 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T01:19:14,958 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T01:19:14,961 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T01:19:14,965 creating build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,966 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,969 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,973 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,975 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,978 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,980 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T01:19:14,983 creating build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,984 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,986 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,988 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,990 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,992 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,994 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:14,997 creating build/lib/omicverse/external/harmony 2026-03-27T01:19:14,998 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T01:19:15,000 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T01:19:15,002 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T01:19:15,006 creating build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,007 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,009 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,011 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,014 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,016 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,018 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,020 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,022 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,024 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,026 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,028 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,031 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,034 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,036 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,039 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T01:19:15,042 creating build/lib/omicverse/external/spaco 2026-03-27T01:19:15,043 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,044 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,047 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,049 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,052 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,054 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,056 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,058 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,060 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T01:19:15,063 creating build/lib/omicverse/external/VIA 2026-03-27T01:19:15,064 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,069 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,072 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,078 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,080 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,083 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,085 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T01:19:15,096 creating build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,097 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,100 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,102 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,105 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,108 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,111 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,114 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,116 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T01:19:15,119 creating build/lib/omicverse/external/commot 2026-03-27T01:19:15,121 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T01:19:15,124 creating build/lib/omicverse/external/datacollect 2026-03-27T01:19:15,125 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:19:15,128 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:19:15,131 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T01:19:15,134 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,136 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,139 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,141 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,144 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,146 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T01:19:15,149 creating build/lib/omicverse/external/topact 2026-03-27T01:19:15,151 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,153 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,155 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,159 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,162 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,164 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,166 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,170 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T01:19:15,173 creating build/lib/omicverse/external/flowsig 2026-03-27T01:19:15,175 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T01:19:15,178 creating build/lib/omicverse/external/PROST 2026-03-27T01:19:15,179 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,182 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,185 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,187 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,190 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,193 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,196 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T01:19:15,199 creating build/lib/omicverse/external/scrublet 2026-03-27T01:19:15,200 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:19:15,203 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:19:15,206 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T01:19:15,209 creating build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,211 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,214 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,217 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,220 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,224 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,226 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,228 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,231 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,234 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T01:19:15,237 creating build/lib/omicverse/external/BINARY 2026-03-27T01:19:15,239 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:19:15,241 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:19:15,244 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:19:15,246 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T01:19:15,249 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,251 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,254 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,257 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,264 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,267 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T01:19:15,270 creating build/lib/omicverse/external/STT 2026-03-27T01:19:15,271 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T01:19:15,274 creating build/lib/omicverse/external/GNTD 2026-03-27T01:19:15,275 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:19:15,278 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:19:15,280 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:19:15,282 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T01:19:15,286 creating build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,287 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,289 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,292 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,294 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,297 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,300 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,303 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,305 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,308 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,311 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,314 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,317 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T01:19:15,320 creating build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,321 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,324 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,326 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,329 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,332 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,335 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,338 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,341 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,344 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T01:19:15,347 creating build/lib/omicverse/external/scMulan 2026-03-27T01:19:15,348 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:19:15,351 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:19:15,353 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T01:19:15,357 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,358 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,361 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,364 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,366 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,368 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T01:19:15,371 creating build/lib/omicverse/external/bin2cell 2026-03-27T01:19:15,372 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:19:15,376 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T01:19:15,379 creating build/lib/omicverse/external/cnmf 2026-03-27T01:19:15,380 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:19:15,384 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T01:19:15,387 creating build/lib/omicverse/external/scdiffusion 2026-03-27T01:19:15,389 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:19:15,391 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:19:15,394 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:19:15,396 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T01:19:15,399 creating build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,401 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,403 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,406 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,408 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,410 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,412 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,415 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T01:19:15,421 creating build/lib/omicverse/external/cellanova 2026-03-27T01:19:15,422 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:19:15,425 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:19:15,427 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T01:19:15,431 creating build/lib/omicverse/external/tape 2026-03-27T01:19:15,432 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,435 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,438 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,440 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,443 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,446 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T01:19:15,449 creating build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,451 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,453 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,456 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,458 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,461 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,463 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,466 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,469 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,472 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,474 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,476 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,478 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,480 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T01:19:15,484 creating build/lib/omicverse/external/gaston 2026-03-27T01:19:15,486 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,488 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,491 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,493 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,495 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,497 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,500 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,503 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,505 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,507 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,509 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,512 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,515 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,517 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,519 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,522 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T01:19:15,524 creating build/lib/omicverse/external/somde 2026-03-27T01:19:15,525 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T01:19:15,527 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T01:19:15,529 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T01:19:15,532 creating build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,533 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,536 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,537 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,539 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,541 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,544 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T01:19:15,547 creating build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,548 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,551 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,554 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,557 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,558 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,560 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,562 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,564 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,567 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,569 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,571 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T01:19:15,574 creating build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,574 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,577 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,581 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,583 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,585 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,587 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,590 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,593 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,595 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T01:19:15,598 creating build/lib/omicverse/external/mofapy2 2026-03-27T01:19:15,599 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:19:15,601 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:19:15,603 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T01:19:15,605 creating build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,606 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,609 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,610 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,613 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,615 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:15,618 creating build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,619 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,622 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,624 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,627 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,628 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,631 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,634 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,636 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,639 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,643 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T01:19:15,645 creating build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,646 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,648 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,650 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,652 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,653 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,655 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,657 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T01:19:15,660 creating build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,661 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,662 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,665 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,666 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,669 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,672 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,674 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,675 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,677 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,679 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,681 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,683 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,685 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,687 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,689 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,691 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,693 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,695 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,697 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,700 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,701 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T01:19:15,704 creating build/lib/omicverse/external/palantir 2026-03-27T01:19:15,705 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,707 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,710 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,712 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,716 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,719 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,722 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,723 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,725 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,727 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,729 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T01:19:15,731 creating build/lib/omicverse/external/scanorama 2026-03-27T01:19:15,732 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:19:15,735 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:19:15,737 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T01:19:15,740 creating build/lib/omicverse/external/CAST 2026-03-27T01:19:15,741 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,744 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,747 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,750 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,752 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,754 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,757 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T01:19:15,761 creating build/lib/omicverse/external/mpl_chord 2026-03-27T01:19:15,762 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:19:15,765 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:19:15,767 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T01:19:15,769 creating build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,770 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,773 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,775 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,778 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,780 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T01:19:15,783 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T01:19:15,784 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:19:15,786 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:19:15,788 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T01:19:15,790 creating build/lib/omicverse/external/nocd/nn 2026-03-27T01:19:15,791 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:19:15,793 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:19:15,795 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:19:15,797 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T01:19:15,800 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:19:15,801 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:19:15,803 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:19:15,805 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T01:19:15,808 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,808 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,811 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,813 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,815 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,817 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,819 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,821 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,823 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T01:19:15,826 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:15,826 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:15,829 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:15,831 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:15,833 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:15,834 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:15,836 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:15,839 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,840 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,842 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,844 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,847 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,849 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:15,852 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,854 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,856 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,858 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,860 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,862 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,864 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,867 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,868 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,870 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,872 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,874 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,876 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:15,879 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,880 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,882 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,885 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,890 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,893 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,895 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,897 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,900 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,903 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,906 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:15,910 creating build/lib/omicverse/external/spaco/external 2026-03-27T01:19:15,911 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:19:15,914 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T01:19:15,916 creating build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,917 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,920 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,922 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,924 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,926 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T01:19:15,929 creating build/lib/omicverse/external/commot/plotting 2026-03-27T01:19:15,930 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:19:15,932 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:19:15,934 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T01:19:15,937 creating build/lib/omicverse/external/commot/tools 2026-03-27T01:19:15,938 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:19:15,942 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:19:15,944 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T01:19:15,947 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:19:15,948 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:19:15,950 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:19:15,952 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T01:19:15,954 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,955 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,957 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,960 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,961 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,964 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:15,969 creating build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,970 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,972 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,975 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,977 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,980 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,984 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,986 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,989 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,992 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,995 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,997 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:15,999 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,002 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,004 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,006 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,009 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,011 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,013 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,015 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,017 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,020 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,022 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,024 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,026 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,028 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,031 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,033 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,036 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,039 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,041 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,043 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,046 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,048 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,051 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T01:19:16,055 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,056 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,059 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,061 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,064 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,066 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,069 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,071 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,074 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,076 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,079 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,081 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,083 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,086 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,088 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,091 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,093 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,095 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,098 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,100 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,102 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,104 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,106 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T01:19:16,109 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,110 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,113 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,114 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,117 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,119 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,122 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T01:19:16,125 creating build/lib/omicverse/external/datacollect/config 2026-03-27T01:19:16,126 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:19:16,128 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T01:19:16,131 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,132 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,134 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,137 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,139 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,142 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,144 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,146 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,149 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,151 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:16,154 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,155 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,157 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,159 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,161 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,163 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,166 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,168 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,170 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:16,173 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:16,174 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:16,176 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:16,179 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:16,180 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:16,183 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,184 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,188 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,190 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,193 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,195 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,197 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,199 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:16,202 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,203 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,206 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,208 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,210 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,212 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,215 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T01:19:16,218 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:19:16,219 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:19:16,221 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T01:19:16,223 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:19:16,224 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:19:16,227 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T01:19:16,229 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T01:19:16,230 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:19:16,232 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:19:16,234 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:19:16,237 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T01:19:16,240 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,241 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,244 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,246 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,248 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,251 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,252 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:16,256 creating build/lib/omicverse/external/single/arboreto 2026-03-27T01:19:16,258 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:19:16,261 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:19:16,262 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:19:16,264 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T01:19:16,267 creating build/lib/omicverse/external/STT/tl 2026-03-27T01:19:16,268 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:19:16,271 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:19:16,273 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:19:16,275 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T01:19:16,278 creating build/lib/omicverse/external/STT/pl 2026-03-27T01:19:16,279 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:19:16,281 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:19:16,283 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:19:16,286 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T01:19:16,289 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:16,289 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:16,292 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T01:19:16,293 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:19:16,295 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T01:19:16,297 creating build/lib/omicverse/external/scMulan/model 2026-03-27T01:19:16,298 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:19:16,300 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T01:19:16,304 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:16,305 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:16,309 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:19:16,310 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:19:16,312 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:19:16,314 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T01:19:16,317 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,318 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,320 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,322 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,324 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,326 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,328 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,330 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,332 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,334 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,337 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,339 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,341 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,343 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,345 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,348 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,350 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,353 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,355 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:16,358 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,359 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,361 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,362 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,365 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,367 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,369 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T01:19:16,372 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:19:16,373 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:19:16,375 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T01:19:16,377 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,378 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,380 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,382 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,385 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,387 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T01:19:16,389 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T01:19:16,390 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:19:16,392 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T01:19:16,397 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,398 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,400 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,402 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,404 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,406 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,407 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,409 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,412 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,414 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,416 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,418 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:16,420 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,421 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,424 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,426 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,429 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,432 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,433 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,436 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,438 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,440 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,441 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,444 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,446 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,448 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,450 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,453 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,455 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,457 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,459 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:16,463 creating build/lib/omicverse/external/space/cell2location 2026-03-27T01:19:16,464 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:19:16,466 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T01:19:16,469 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:19:16,470 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:19:16,472 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:19:16,475 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T01:19:16,477 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,478 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,480 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,483 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,485 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,487 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:16,490 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:16,491 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:16,493 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:16,495 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:16,497 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:16,499 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,500 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,503 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,505 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,508 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,510 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:16,513 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:16,514 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:16,516 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:16,519 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,520 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,522 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,524 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,526 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,528 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,530 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,532 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,535 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T01:19:16,538 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:19:16,538 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:19:16,541 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:19:16,543 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T01:19:16,545 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:16,546 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:16,549 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:16,552 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:16,554 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,555 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,557 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,558 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,561 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,562 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:16,566 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:16,567 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:16,570 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:16,572 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:16,574 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:16,575 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:16,578 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:16,581 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:16,584 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:19:16,585 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:19:16,587 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:19:16,589 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T01:19:16,592 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:19:16,593 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:19:16,596 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:19:16,597 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T01:19:16,600 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,601 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,604 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,608 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,610 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,612 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,614 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,617 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,619 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T01:19:16,622 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,623 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,624 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,627 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,628 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,630 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T01:19:16,632 creating build/lib/omicverse/external/CAST/model 2026-03-27T01:19:16,633 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:19:16,635 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:19:16,637 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T01:19:16,639 creating build/lib/omicverse/io/bulk 2026-03-27T01:19:16,640 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T01:19:16,643 creating build/lib/omicverse/io/single 2026-03-27T01:19:16,644 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T01:19:16,646 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T01:19:16,647 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T01:19:16,650 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T01:19:16,653 creating build/lib/omicverse/io/general 2026-03-27T01:19:16,654 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T01:19:16,656 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T01:19:16,658 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T01:19:16,660 creating build/lib/omicverse/io/spatial 2026-03-27T01:19:16,661 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T01:19:16,664 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T01:19:16,666 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T01:19:16,668 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T01:19:16,671 creating build/lib/omicverse/jarvis/memory 2026-03-27T01:19:16,672 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:19:16,674 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T01:19:16,676 creating build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,677 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,679 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,681 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,683 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,685 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,686 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,688 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T01:19:16,690 creating build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,691 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,693 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,696 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,699 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,702 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,705 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,708 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T01:19:16,712 creating build/lib/omicverse/jarvis/gateway 2026-03-27T01:19:16,713 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:19:16,716 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:19:16,717 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T01:19:16,720 creating build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,721 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,723 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,725 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,727 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,730 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,732 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,734 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,736 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,738 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,740 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,742 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,745 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T01:19:16,748 creating build/lib/omicverse/popv/hub 2026-03-27T01:19:16,749 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T01:19:16,750 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T01:19:16,752 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T01:19:16,754 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T01:19:16,756 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T01:19:16,760 running egg_info 2026-03-27T01:19:16,771 writing omicverse.egg-info/PKG-INFO 2026-03-27T01:19:16,788 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T01:19:16,790 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T01:19:16,799 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T01:19:16,800 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T01:19:16,982 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:17,042 reading manifest template 'MANIFEST.in' 2026-03-27T01:19:17,970 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T01:19:19,329 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T01:19:19,799 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T01:19:23,988 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T01:19:24,479 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T01:19:24,953 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T01:19:25,421 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T01:19:25,888 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T01:19:26,352 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T01:19:26,843 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T01:19:26,846 no previously-included directories found matching '.git' 2026-03-27T01:19:26,849 no previously-included directories found matching '.github' 2026-03-27T01:19:26,852 no previously-included directories found matching '.claude' 2026-03-27T01:19:26,855 no previously-included directories found matching '.pytest_cache' 2026-03-27T01:19:26,858 no previously-included directories found matching '.ruff_cache' 2026-03-27T01:19:26,861 no previously-included directories found matching '.vscode' 2026-03-27T01:19:26,864 no previously-included directories found matching 'docs' 2026-03-27T01:19:26,867 no previously-included directories found matching 'tests' 2026-03-27T01:19:26,870 no previously-included directories found matching 'OvIntelligence' 2026-03-27T01:19:26,873 no previously-included directories found matching 'READMEM' 2026-03-27T01:19:26,876 no previously-included directories found matching 'omicverse_guide' 2026-03-27T01:19:26,880 no previously-included directories found matching 'omicverse_web' 2026-03-27T01:19:26,882 no previously-included directories found matching 'tmp' 2026-03-27T01:19:26,885 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T01:19:26,888 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T01:19:26,894 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T01:19:26,902 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T01:19:26,909 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T01:19:26,909 adding license file 'LICENSE' 2026-03-27T01:19:26,977 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T01:19:27,077 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T01:19:27,080 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T01:19:27,083 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T01:19:27,085 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T01:19:27,090 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T01:19:27,093 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T01:19:27,187 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T01:19:27,190 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T01:19:27,192 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T01:19:27,195 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T01:19:27,198 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T01:19:27,201 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T01:19:27,204 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T01:19:27,206 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T01:19:27,208 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T01:19:27,211 creating build/lib/omicverse/single/templates/img 2026-03-27T01:19:27,212 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T01:19:27,214 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:19:27,218 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:19:27,221 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T01:19:27,225 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:27,231 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:27,234 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:27,237 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T01:19:27,239 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:19:27,240 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T01:19:27,242 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:27,267 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:27,285 creating build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,286 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,289 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,292 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,302 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,319 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T01:19:27,331 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T01:19:27,333 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:19:27,336 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T01:19:27,339 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T01:19:27,341 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:27,346 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:27,347 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:27,430 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:27,435 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:27,442 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:27,444 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:27,448 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:27,452 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:27,454 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:27,458 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:27,464 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:27,471 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,472 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,474 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,477 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,479 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,482 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,485 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,488 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,491 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,494 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,496 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,499 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,501 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T01:19:27,504 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:27,507 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:27,510 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:27,512 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T01:19:27,515 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:28,298 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:28,378 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:28,379 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:28,390 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:28,399 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:28,407 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:28,411 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:28,461 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:28,490 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:28,527 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T01:19:28,632 installing to build/bdist.linux-armv7l/wheel 2026-03-27T01:19:28,633 running install 2026-03-27T01:19:28,656 running install_lib 2026-03-27T01:19:28,662 creating build/bdist.linux-armv7l/wheel 2026-03-27T01:19:28,664 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T01:19:28,666 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T01:19:28,667 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,670 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,671 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,673 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,675 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,677 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,679 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,681 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,683 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,685 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T01:19:28,687 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:28,690 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T01:19:28,691 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,694 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,697 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,700 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,702 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,705 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,708 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,710 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,712 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,715 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,717 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,720 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,723 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,726 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,730 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,733 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,735 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,737 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,741 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,743 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,745 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T01:19:28,746 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:19:28,749 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:19:28,751 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T01:19:28,753 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,756 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,758 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T01:19:28,761 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T01:19:28,762 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,764 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,767 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,769 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,771 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,773 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,776 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,779 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,781 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,784 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T01:19:28,787 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:28,791 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T01:19:28,792 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T01:19:28,794 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:28,798 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T01:19:28,799 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,801 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,804 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,807 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,810 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,813 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,815 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,818 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,821 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,823 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,825 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,827 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,831 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T01:19:28,832 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,835 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,837 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,839 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,842 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,846 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,848 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,851 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,853 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,855 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,858 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,861 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,863 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T01:19:28,865 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,869 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,871 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,874 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,875 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,878 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,880 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,882 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,884 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,886 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,888 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,891 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,893 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,895 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,898 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T01:19:28,899 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,902 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,906 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,907 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,909 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,911 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,914 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,916 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,919 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,921 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T01:19:28,924 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,927 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,930 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T01:19:28,931 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,933 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,935 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,938 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,940 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,943 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,945 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T01:19:28,947 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,949 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,951 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:28,954 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T01:19:28,956 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,958 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,960 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,964 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,967 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,970 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,972 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,976 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,978 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,980 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,982 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,987 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,990 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,992 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,995 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T01:19:28,997 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:29,000 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:29,002 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T01:19:29,005 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T01:19:29,006 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,009 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,011 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,013 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,015 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,017 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,019 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,022 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T01:19:29,023 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T01:19:29,024 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,027 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,030 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,032 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T01:19:29,059 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T01:19:29,060 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:19:29,062 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:19:29,064 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:19:29,067 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:19:29,070 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T01:19:29,074 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T01:19:29,075 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,077 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,079 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,082 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,084 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,086 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,088 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,092 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T01:19:29,095 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T01:19:29,096 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,099 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,102 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,105 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,108 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,111 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,114 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,116 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,120 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T01:19:29,124 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T01:19:29,125 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,129 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,132 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,135 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,139 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,145 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,149 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,152 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,156 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,160 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,163 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,166 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,170 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,173 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,176 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,181 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,183 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,186 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,188 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,191 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,193 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,196 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,198 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,201 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,204 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,206 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,209 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,211 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,214 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,219 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,221 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,223 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,226 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,229 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,231 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,234 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,237 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,239 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,241 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,243 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,246 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,248 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,250 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,253 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,255 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T01:19:29,262 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T01:19:29,263 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,265 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,267 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,269 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,272 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T01:19:29,273 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:19:29,276 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:19:29,278 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:19:29,281 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T01:19:29,284 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,286 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T01:19:29,289 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T01:19:29,291 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,293 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,297 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,302 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T01:19:29,303 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:19:29,305 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:19:29,308 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T01:19:29,310 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,312 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,316 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T01:19:29,317 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,319 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,322 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,324 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,327 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,329 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,331 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,333 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,335 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,337 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,340 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,343 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,345 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T01:19:29,347 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,355 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,357 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T01:19:29,359 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T01:19:29,361 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T01:19:29,364 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,368 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,371 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T01:19:29,372 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,375 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,376 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,378 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,380 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,383 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,386 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T01:19:29,388 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T01:19:29,390 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:19:29,392 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T01:19:29,394 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,397 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T01:19:29,399 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,402 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,404 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,407 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,409 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,411 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T01:19:29,415 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,417 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,419 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,422 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T01:19:29,424 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:29,425 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:29,445 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:29,448 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:29,450 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T01:19:29,479 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T01:19:29,480 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:19:29,482 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:19:29,484 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T01:19:29,487 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T01:19:29,488 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,490 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,492 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,494 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,496 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,499 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,500 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,502 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,504 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,507 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,509 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T01:19:29,512 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T01:19:29,514 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,518 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,523 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T01:19:29,525 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T01:19:29,526 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:19:29,528 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:19:29,530 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:19:29,531 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:19:29,533 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T01:19:29,535 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,537 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,539 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,541 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,544 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T01:19:29,545 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:19:29,548 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T01:19:29,551 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T01:19:29,552 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:19:29,554 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:19:29,556 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T01:19:29,559 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T01:19:29,560 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:19:29,562 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:19:29,564 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T01:19:29,567 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T01:19:29,568 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T01:19:29,570 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,572 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T01:19:29,575 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T01:19:29,576 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T01:19:29,577 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:19:29,579 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:19:29,581 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T01:19:29,583 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,584 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,587 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,589 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,591 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,594 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,596 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T01:19:29,598 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,599 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,602 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,603 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,606 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,608 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T01:19:29,611 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T01:19:29,612 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:19:29,614 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T01:19:29,617 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T01:19:29,618 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:19:29,620 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T01:19:29,623 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T01:19:29,624 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:19:29,626 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:19:29,627 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:19:29,630 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T01:19:29,632 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T01:19:29,634 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T01:19:29,635 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:19:29,637 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T01:19:29,639 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T01:19:29,640 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:19:29,642 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:19:29,644 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T01:19:29,646 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T01:19:29,647 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:19:29,650 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:19:29,652 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T01:19:29,655 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,656 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,659 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,662 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,663 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,666 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T01:19:29,669 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T01:19:29,670 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T01:19:29,673 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T01:19:29,674 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T01:19:29,676 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T01:19:29,677 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T01:19:29,680 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T01:19:29,681 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,682 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,685 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,687 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,690 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,692 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,694 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,696 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T01:19:29,698 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,701 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,703 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,706 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,710 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,712 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,714 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,718 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,721 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,724 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,726 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,729 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T01:19:29,732 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,737 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,739 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T01:19:29,741 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:29,744 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T01:19:29,745 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:19:29,748 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:19:29,750 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T01:19:29,753 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T01:19:29,754 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:19:29,757 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:19:29,759 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T01:19:29,760 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:29,764 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T01:19:29,765 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T01:19:29,766 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:19:29,787 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:19:29,789 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:19:29,799 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:19:29,811 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T01:19:29,813 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:19:29,815 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:19:29,817 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:19:29,896 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:19:29,898 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T01:19:29,906 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T01:19:29,907 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,910 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,913 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,916 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,919 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,921 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,923 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,926 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,931 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,935 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,938 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,942 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T01:19:29,943 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:19:29,946 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:19:29,949 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:19:29,952 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:19:29,956 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T01:19:29,959 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,962 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T01:19:29,965 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:29,969 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T01:19:29,974 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T01:19:29,977 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T01:19:29,979 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T01:19:29,981 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:19:29,984 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:19:29,987 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T01:19:29,990 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:29,993 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:29,997 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:30,000 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:30,003 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:30,007 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T01:19:30,009 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:19:30,012 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:19:30,014 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:19:30,018 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T01:19:30,021 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T01:19:30,024 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T01:19:30,026 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:19:30,029 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:19:30,032 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T01:19:30,035 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T01:19:30,037 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T01:19:30,039 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:19:30,042 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:19:30,046 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T01:19:30,049 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T01:19:30,050 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,053 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,056 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,059 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,061 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,065 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:30,066 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:30,069 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:30,072 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T01:19:30,075 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,078 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:30,079 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:30,082 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T01:19:30,084 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,087 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T01:19:30,089 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:19:30,092 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:19:30,094 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T01:19:30,098 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T01:19:30,099 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:19:30,101 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:19:30,103 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T01:19:30,107 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T01:19:30,109 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T01:19:30,111 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,112 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,115 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,117 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,120 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,123 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T01:19:30,126 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,128 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,131 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:30,133 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:30,236 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:30,242 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T01:19:30,247 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,249 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,251 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,253 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,255 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,257 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,259 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,261 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,263 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,265 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,267 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T01:19:30,270 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,271 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,273 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,276 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,279 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,282 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,284 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,287 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,289 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,291 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,294 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,297 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T01:19:30,304 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T01:19:30,305 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:19:30,308 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:19:30,310 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:19:30,312 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:19:30,314 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T01:19:30,317 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T01:19:30,318 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,320 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,322 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,324 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,327 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,329 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T01:19:30,332 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T01:19:30,333 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,335 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,337 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,338 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,341 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,342 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,345 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T01:19:30,347 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T01:19:30,348 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:19:30,350 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:19:30,352 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T01:19:30,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T01:19:30,357 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,359 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,361 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,364 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,365 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,368 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,369 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,371 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,373 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,375 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,378 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,380 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,383 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,385 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,388 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T01:19:30,391 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T01:19:30,392 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,393 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,396 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,398 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,400 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,402 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,404 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,406 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,408 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T01:19:30,409 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:19:30,412 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T01:19:30,414 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T01:19:30,417 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T01:19:30,418 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,425 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,430 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,439 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,440 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,443 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,445 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T01:19:30,453 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T01:19:30,455 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,457 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,459 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,462 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,465 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,467 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,470 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,471 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T01:19:30,475 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T01:19:30,476 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T01:19:30,478 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:19:30,480 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:19:30,482 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:19:30,484 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:19:30,486 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T01:19:30,489 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T01:19:30,490 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:19:30,493 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:19:30,494 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T01:19:30,497 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T01:19:30,500 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T01:19:30,501 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:19:30,504 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:19:30,506 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T01:19:30,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T01:19:30,510 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:19:30,513 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T01:19:30,515 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T01:19:30,516 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:30,518 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:30,521 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T01:19:30,526 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:30,527 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:30,531 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:30,536 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T01:19:30,540 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:19:30,542 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T01:19:30,545 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,546 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,548 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,551 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,553 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,556 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T01:19:30,559 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T01:19:30,560 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:19:30,564 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T01:19:30,565 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,567 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,570 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,572 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,574 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,577 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,579 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,581 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,584 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,587 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,589 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,591 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,594 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,596 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,599 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,601 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,603 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,606 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,608 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,610 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,613 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,615 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,618 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,620 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,621 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,624 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,627 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,629 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,631 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,633 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,636 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,638 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,641 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T01:19:30,644 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,645 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,647 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,650 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,652 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,654 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,657 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,659 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,662 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T01:19:30,664 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,667 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,670 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T01:19:30,671 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:19:30,673 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:19:30,676 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:19:30,678 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T01:19:30,681 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,683 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,685 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,688 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,690 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,693 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,694 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,697 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,699 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,701 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,703 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,706 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,707 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T01:19:30,710 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,711 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,714 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,716 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,718 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,720 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,722 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T01:19:30,725 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,727 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,729 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,731 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T01:19:30,734 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T01:19:30,735 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,738 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,740 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,743 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,745 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,748 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,750 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,752 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,755 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,757 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,759 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,762 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,765 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,767 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,770 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,772 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,774 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,777 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,779 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,781 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,784 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,786 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T01:19:30,789 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T01:19:30,790 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,793 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,795 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,798 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,801 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,803 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T01:19:30,806 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:19:30,808 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:19:30,811 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:19:30,814 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T01:19:30,815 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,818 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,820 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,823 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,825 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,827 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,830 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,832 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,835 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,837 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,840 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,842 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T01:19:30,845 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T01:19:30,846 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:19:30,848 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T01:19:30,850 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T01:19:30,854 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T01:19:30,855 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:19:30,857 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:19:30,859 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:19:30,861 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:19:30,863 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T01:19:30,866 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T01:19:30,867 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,869 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,871 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,874 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,876 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,878 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,880 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,883 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T01:19:30,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T01:19:30,888 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T01:19:30,889 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:19:30,891 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T01:19:30,893 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T01:19:30,894 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:19:30,897 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T01:19:30,899 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T01:19:30,901 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T01:19:30,902 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:19:30,904 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:19:30,906 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:19:30,908 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T01:19:30,911 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,912 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,915 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,916 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,919 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,921 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,923 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T01:19:30,926 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T01:19:30,927 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,929 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,932 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,934 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,936 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,939 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,941 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T01:19:30,944 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T01:19:30,945 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T01:19:30,946 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:19:30,949 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:19:30,951 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:19:30,953 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T01:19:30,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T01:19:30,957 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:19:30,959 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:19:30,962 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T01:19:30,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T01:19:30,966 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,968 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,972 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,974 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,977 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,979 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,981 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,984 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,987 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T01:19:30,990 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T01:19:30,991 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:19:30,993 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:19:30,996 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:19:30,998 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T01:19:31,001 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T01:19:31,002 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:19:31,005 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:19:31,007 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:19:31,013 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:19:31,015 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T01:19:31,017 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T01:19:31,020 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T01:19:31,021 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T01:19:31,023 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T01:19:31,024 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:19:31,027 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:19:31,029 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:19:31,031 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T01:19:31,034 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T01:19:31,034 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:19:31,037 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:19:31,039 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:19:31,042 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T01:19:31,045 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T01:19:31,046 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:19:31,049 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:19:31,051 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:19:31,052 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T01:19:31,055 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T01:19:31,056 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,059 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,061 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,063 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,065 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,068 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,070 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,072 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,074 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,077 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,080 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,081 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T01:19:31,084 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T01:19:31,085 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,087 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,089 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,091 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,094 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,096 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,099 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,102 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T01:19:31,103 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:19:31,105 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:19:31,107 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:19:31,109 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:19:31,112 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T01:19:31,114 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,116 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T01:19:31,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T01:19:31,121 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:19:31,124 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T01:19:31,126 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:19:31,128 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T01:19:31,131 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T01:19:31,132 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:19:31,135 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T01:19:31,138 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:19:31,141 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T01:19:31,143 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:31,165 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:31,193 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:31,645 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T01:19:31,648 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T01:19:31,652 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,653 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,656 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,658 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,661 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,663 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T01:19:31,668 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T01:19:31,669 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:19:31,674 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T01:19:31,677 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T01:19:31,679 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:19:31,684 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T01:19:31,687 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T01:19:31,689 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:19:31,692 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T01:19:31,693 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:19:31,697 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:19:31,700 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T01:19:31,701 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:19:31,704 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,705 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,708 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,710 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,712 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,714 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,715 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,717 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,719 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,721 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,724 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,726 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,728 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,730 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,732 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,734 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,736 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,739 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,741 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T01:19:31,744 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:19:31,745 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T01:19:31,749 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T01:19:31,750 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,752 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,754 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,756 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,757 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,759 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,761 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T01:19:31,764 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T01:19:31,765 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:19:31,767 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:19:31,769 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T01:19:31,771 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T01:19:31,772 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,775 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,777 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,779 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,781 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,784 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T01:19:31,787 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T01:19:31,788 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,790 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,792 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,794 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,796 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,798 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,800 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,803 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,805 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,807 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,809 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,811 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,813 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T01:19:31,817 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T01:19:31,818 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,820 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,822 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,824 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,826 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,828 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,830 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,832 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,834 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,836 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,838 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,840 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,842 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,844 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,846 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,848 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T01:19:31,850 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T01:19:31,851 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:19:31,854 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:19:31,855 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T01:19:31,858 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T01:19:31,859 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,862 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,863 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,865 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,868 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,870 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T01:19:31,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T01:19:31,875 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,877 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,880 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,882 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,884 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,887 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,889 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,891 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,893 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,895 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,897 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T01:19:31,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T01:19:31,901 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,903 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,906 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,909 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,911 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,913 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,915 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,918 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,920 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T01:19:31,923 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T01:19:31,925 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,926 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,928 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,930 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,933 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,934 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,937 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T01:19:31,939 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:19:31,941 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:19:31,943 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T01:19:31,945 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T01:19:31,946 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:19:31,948 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T01:19:31,950 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T01:19:31,952 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,953 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,955 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,957 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,959 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,961 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,963 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,965 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,968 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,969 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,972 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,974 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T01:19:31,975 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:19:31,977 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:19:31,979 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:19:31,982 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,983 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,987 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,989 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,991 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,993 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,995 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:31,998 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,000 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,002 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,003 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,006 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,008 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,010 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,012 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,014 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,016 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,018 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,021 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T01:19:32,023 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:19:32,025 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T01:19:32,028 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T01:19:32,029 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:19:32,031 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T01:19:32,034 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:32,036 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:32,043 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:32,051 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:32,054 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:32,076 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:32,096 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T01:19:32,115 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T01:19:32,123 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T01:19:32,124 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T01:19:32,126 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T01:19:32,127 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:19:32,129 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:19:32,132 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T01:19:32,134 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,135 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,137 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,139 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,142 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,143 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T01:19:32,146 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:19:32,148 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:32,149 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:32,152 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:32,154 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:32,156 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T01:19:32,159 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T01:19:32,160 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,164 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:32,165 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:32,168 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:32,170 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T01:19:32,172 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,173 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,175 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,177 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,180 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,181 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T01:19:32,185 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:32,186 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:32,188 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:32,190 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T01:19:32,192 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,194 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,197 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:32,198 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:32,200 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:32,203 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T01:19:32,205 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,207 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,210 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T01:19:32,213 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:32,214 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:32,216 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T01:19:32,219 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,220 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,222 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,224 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,226 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,228 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,230 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,232 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,234 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T01:19:32,237 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T01:19:32,240 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T01:19:32,241 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:19:32,243 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:19:32,246 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T01:19:32,248 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T01:19:32,249 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,252 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,253 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,256 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,258 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,260 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T01:19:32,263 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T01:19:32,264 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,266 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,269 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,271 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,272 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,275 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,277 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,279 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,283 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,286 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T01:19:32,288 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T01:19:32,289 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,291 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,293 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,295 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,297 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,299 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,301 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T01:19:32,304 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T01:19:32,305 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,307 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,309 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,311 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,315 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T01:19:32,316 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:19:32,318 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:19:32,320 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T01:19:32,323 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,326 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,328 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T01:19:32,329 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:19:32,331 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:19:32,333 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T01:19:32,336 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,337 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,340 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,342 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,344 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,346 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,348 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T01:19:32,349 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,353 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,356 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,358 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,360 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,363 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,366 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,368 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T01:19:32,371 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T01:19:32,372 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:19:32,374 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:19:32,377 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:19:32,378 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:19:32,380 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T01:19:32,382 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,384 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,387 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,389 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,391 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,393 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,395 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,398 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,400 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T01:19:32,403 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T01:19:32,404 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,406 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,409 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,411 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,415 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,418 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,421 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,423 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,425 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,427 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,429 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T01:19:32,431 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T01:19:32,432 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:19:32,435 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:19:32,437 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T01:19:32,441 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T01:19:32,442 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,445 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,448 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T01:19:32,449 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:19:32,451 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:19:32,453 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T01:19:32,455 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,458 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,460 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,462 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,464 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T01:19:32,467 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T01:19:32,468 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:19:32,471 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:19:32,473 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T01:19:32,476 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T01:19:32,477 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:19:32,480 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:19:32,482 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:19:32,484 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:19:32,486 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T01:19:32,490 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T01:19:32,491 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,494 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,499 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,502 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,504 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,508 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,510 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,513 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,515 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,521 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,524 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,526 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,530 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,532 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,537 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,540 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,544 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,547 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,552 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,554 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T01:19:32,558 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T01:19:32,560 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T01:19:32,561 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T01:19:32,564 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T01:19:32,566 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:19:32,568 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:19:32,570 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:19:32,573 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T01:19:32,576 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T01:19:32,579 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T01:19:32,580 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:19:32,583 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:19:32,585 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T01:19:32,588 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T01:19:32,589 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:19:32,592 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:19:32,594 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:19:32,597 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T01:19:32,601 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T01:19:32,602 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,606 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,609 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,612 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,615 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,618 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,621 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,624 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,626 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,630 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,633 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,635 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,638 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,641 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T01:19:32,645 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T01:19:32,647 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,649 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,652 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,656 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T01:19:32,657 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:19:32,660 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T01:19:32,663 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,665 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,669 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T01:19:32,670 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,673 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,675 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,678 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,680 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,682 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,685 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T01:19:32,687 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,690 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,692 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,695 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,699 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T01:19:32,700 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,702 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,706 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,710 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,713 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,716 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,720 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T01:19:32,724 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,727 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,729 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,732 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,735 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,737 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,740 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T01:19:32,741 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:19:32,744 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:19:32,746 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T01:19:32,749 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T01:19:32,751 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T01:19:32,753 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,755 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,758 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,761 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T01:19:32,762 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,765 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,768 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,770 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,773 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,775 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,778 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,780 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,783 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,785 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,788 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,791 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T01:19:32,793 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,796 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,799 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T01:19:32,801 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:19:32,803 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:19:32,805 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:19:32,808 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:19:32,810 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T01:19:32,813 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T01:19:32,815 running install_egg_info 2026-03-27T01:19:32,821 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.8-py3.11.egg-info 2026-03-27T01:19:32,836 running install_scripts 2026-03-27T01:19:32,850 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.8.dist-info/WHEEL 2026-03-27T01:19:32,854 creating '/tmp/pip-wheel-domlv4in/.tmp-y1nt7y75/omicverse-2.0.8-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T01:19:32,858 adding 'omicverse/__init__.py' 2026-03-27T01:19:32,860 adding 'omicverse/_lazy_loader.py' 2026-03-27T01:19:32,862 adding 'omicverse/_monitor.py' 2026-03-27T01:19:32,869 adding 'omicverse/_registry.py' 2026-03-27T01:19:32,875 adding 'omicverse/_settings.py' 2026-03-27T01:19:32,878 adding 'omicverse/claw.py' 2026-03-27T01:19:32,880 adding 'omicverse/cli.py' 2026-03-27T01:19:32,882 adding 'omicverse/agent/__init__.py' 2026-03-27T01:19:32,885 adding 'omicverse/alignment/STAR.py' 2026-03-27T01:19:32,886 adding 'omicverse/alignment/__init__.py' 2026-03-27T01:19:32,888 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T01:19:32,889 adding 'omicverse/alignment/fastp.py' 2026-03-27T01:19:32,892 adding 'omicverse/alignment/featureCount.py' 2026-03-27T01:19:32,894 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T01:19:32,897 adding 'omicverse/alignment/kb_api.py' 2026-03-27T01:19:32,899 adding 'omicverse/alignment/pipeline.py' 2026-03-27T01:19:32,901 adding 'omicverse/alignment/prefetch.py' 2026-03-27T01:19:32,903 adding 'omicverse/biocontext/__init__.py' 2026-03-27T01:19:32,904 adding 'omicverse/biocontext/_client.py' 2026-03-27T01:19:32,907 adding 'omicverse/biocontext/_tools.py' 2026-03-27T01:19:32,912 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T01:19:32,915 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T01:19:32,918 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T01:19:32,921 adding 'omicverse/bulk/__init__.py' 2026-03-27T01:19:32,967 adding 'omicverse/bulk/_chm13.py' 2026-03-27T01:19:32,972 adding 'omicverse/bulk/_combat.py' 2026-03-27T01:19:32,974 adding 'omicverse/bulk/_decov.py' 2026-03-27T01:19:32,976 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T01:19:32,980 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T01:19:32,982 adding 'omicverse/bulk/_network.py' 2026-03-27T01:19:32,985 adding 'omicverse/bulk/_tcga.py' 2026-03-27T01:19:32,986 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T01:19:32,988 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T01:19:32,992 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T01:19:32,993 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T01:19:32,996 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T01:19:33,001 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T01:19:33,005 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T01:19:33,007 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T01:19:33,010 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T01:19:33,012 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T01:19:33,014 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T01:19:33,016 adding 'omicverse/data_files/README.md' 2026-03-27T01:19:33,056 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T01:19:33,059 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T01:19:33,609 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T01:19:33,641 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T01:19:33,644 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T01:19:33,647 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T01:19:33,670 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T01:19:33,712 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T01:19:33,752 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T01:19:33,758 adding 'omicverse/datasets/__init__.py' 2026-03-27T01:19:33,763 adding 'omicverse/datasets/_datasets.py' 2026-03-27T01:19:33,765 adding 'omicverse/datasets/_signatures.py' 2026-03-27T01:19:33,768 adding 'omicverse/external/__init__.py' 2026-03-27T01:19:33,770 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T01:19:33,771 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T01:19:33,772 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T01:19:33,775 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T01:19:33,777 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T01:19:33,780 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T01:19:33,784 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T01:19:33,785 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T01:19:33,787 adding 'omicverse/external/CAST/main.py' 2026-03-27T01:19:33,790 adding 'omicverse/external/CAST/utils.py' 2026-03-27T01:19:33,792 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T01:19:33,794 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T01:19:33,795 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T01:19:33,796 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T01:19:33,798 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T01:19:33,800 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T01:19:33,801 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T01:19:33,804 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T01:19:33,807 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T01:19:33,809 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T01:19:33,812 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T01:19:33,814 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T01:19:33,816 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T01:19:33,818 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T01:19:33,820 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T01:19:33,823 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T01:19:33,825 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T01:19:33,827 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T01:19:33,830 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T01:19:33,831 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T01:19:33,833 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T01:19:33,834 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T01:19:33,837 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T01:19:33,838 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T01:19:33,840 adding 'omicverse/external/GraphST/model.py' 2026-03-27T01:19:33,842 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T01:19:33,843 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T01:19:33,844 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T01:19:33,846 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T01:19:33,847 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T01:19:33,849 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T01:19:33,850 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T01:19:33,851 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T01:19:33,852 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T01:19:33,854 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T01:19:33,856 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T01:19:33,857 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T01:19:33,859 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T01:19:33,861 adding 'omicverse/external/PROST/layers.py' 2026-03-27T01:19:33,862 adding 'omicverse/external/PROST/model.py' 2026-03-27T01:19:33,864 adding 'omicverse/external/PROST/plot.py' 2026-03-27T01:19:33,868 adding 'omicverse/external/PROST/utils.py' 2026-03-27T01:19:33,869 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T01:19:33,872 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T01:19:33,873 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T01:19:33,875 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T01:19:33,898 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T01:19:33,901 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T01:19:33,902 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T01:19:33,904 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T01:19:33,906 adding 'omicverse/external/SEACells/core.py' 2026-03-27T01:19:33,909 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T01:19:33,912 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T01:19:33,913 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T01:19:33,915 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T01:19:33,917 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T01:19:33,920 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T01:19:33,922 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T01:19:33,923 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T01:19:33,925 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T01:19:33,926 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T01:19:33,927 adding 'omicverse/external/SEACells/version.py' 2026-03-27T01:19:33,929 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T01:19:33,930 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T01:19:33,932 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T01:19:33,933 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T01:19:33,936 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T01:19:33,938 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T01:19:33,940 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T01:19:33,942 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T01:19:33,944 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T01:19:33,946 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T01:19:33,948 adding 'omicverse/external/STT/__init__.py' 2026-03-27T01:19:33,950 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T01:19:33,953 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T01:19:33,955 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T01:19:33,957 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T01:19:33,959 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T01:19:33,961 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T01:19:33,963 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T01:19:33,965 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T01:19:33,966 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T01:19:33,968 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T01:19:33,970 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T01:19:33,971 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T01:19:33,974 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T01:19:33,976 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T01:19:33,977 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T01:19:33,979 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T01:19:34,000 adding 'omicverse/external/VIA/core.py' 2026-03-27T01:19:34,004 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T01:19:34,029 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T01:19:34,055 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T01:19:34,069 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T01:19:34,072 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T01:19:34,073 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T01:19:34,087 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T01:19:34,089 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T01:19:34,091 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T01:19:34,093 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T01:19:34,095 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T01:19:34,096 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T01:19:34,097 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T01:19:34,099 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T01:19:34,101 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T01:19:34,102 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T01:19:34,104 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T01:19:34,106 adding 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