2026-03-27T04:13:28,648 Created temporary directory: /tmp/pip-ephem-wheel-cache-xesau9av 2026-03-27T04:13:28,650 Created temporary directory: /tmp/pip-build-tracker-gixt7bo2 2026-03-27T04:13:28,650 Initialized build tracking at /tmp/pip-build-tracker-gixt7bo2 2026-03-27T04:13:28,651 Created build tracker: /tmp/pip-build-tracker-gixt7bo2 2026-03-27T04:13:28,651 Entered build tracker: /tmp/pip-build-tracker-gixt7bo2 2026-03-27T04:13:28,652 Created temporary directory: /tmp/pip-wheel-qd0clar7 2026-03-27T04:13:28,654 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,189 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,190 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,190 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,191 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,191 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,192 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,192 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,193 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,194 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,194 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,195 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,195 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,195 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,196 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,196 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,197 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,198 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,198 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:13:29,199 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T04:13:29,199 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T04:13:29,225 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T04:13:29,243 Collecting omicverse==2.0.9 2026-03-27T04:13:29,246 Created temporary directory: /tmp/pip-unpack-x8nj3ypd 2026-03-27T04:13:29,399 Downloading omicverse-2.0.9.tar.gz (11.8 MB) 2026-03-27T04:13:34,876 Added omicverse==2.0.9 from https://files.pythonhosted.org/packages/7a/ea/81f7740737e87d2f4d574e67c76118abf6cc1fc2c3fd5a75bf7eb0270ad7/omicverse-2.0.9.tar.gz to build tracker '/tmp/pip-build-tracker-gixt7bo2' 2026-03-27T04:13:34,884 Created temporary directory: /tmp/pip-build-env-lxmd75kf 2026-03-27T04:13:34,888 Installing build dependencies: started 2026-03-27T04:13:34,889 Running command pip subprocess to install build dependencies 2026-03-27T04:13:36,058 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T04:13:36,469 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T04:13:36,492 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T04:13:38,270 Collecting setuptools>=61 2026-03-27T04:13:38,357 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T04:13:38,624 Collecting wheel 2026-03-27T04:13:38,639 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T04:13:40,648 Collecting Cython 2026-03-27T04:13:41,469 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T04:13:42,270 Collecting packaging>=24.0 2026-03-27T04:13:42,286 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T04:13:45,313 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T04:13:52,871 Creating /tmp/pip-build-env-lxmd75kf/overlay/local/bin 2026-03-27T04:13:52,873 changing mode of /tmp/pip-build-env-lxmd75kf/overlay/local/bin/cygdb to 755 2026-03-27T04:13:52,875 changing mode of /tmp/pip-build-env-lxmd75kf/overlay/local/bin/cython to 755 2026-03-27T04:13:52,877 changing mode of /tmp/pip-build-env-lxmd75kf/overlay/local/bin/cythonize to 755 2026-03-27T04:13:53,005 changing mode of /tmp/pip-build-env-lxmd75kf/overlay/local/bin/wheel to 755 2026-03-27T04:13:53,033 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T04:13:53,412 Installing build dependencies: finished with status 'done' 2026-03-27T04:13:53,418 Getting requirements to build wheel: started 2026-03-27T04:13:53,420 Running command Getting requirements to build wheel 2026-03-27T04:13:54,136 /tmp/pip-build-env-lxmd75kf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:13:54,137 !! 2026-03-27T04:13:54,138 ******************************************************************************** 2026-03-27T04:13:54,138 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:13:54,140 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:13:54,140 or your builds will no longer be supported. 2026-03-27T04:13:54,141 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:13:54,142 ******************************************************************************** 2026-03-27T04:13:54,143 !! 2026-03-27T04:13:54,143 corresp(dist, value, root_dir) 2026-03-27T04:13:54,425 running egg_info 2026-03-27T04:13:54,432 writing omicverse.egg-info/PKG-INFO 2026-03-27T04:13:54,450 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T04:13:54,452 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T04:13:54,461 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T04:13:54,463 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T04:13:54,722 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:13:54,783 reading manifest template 'MANIFEST.in' 2026-03-27T04:13:55,772 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:13:57,157 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:13:57,600 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:14:01,963 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:14:02,469 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:14:02,913 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:14:03,352 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:14:03,783 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:14:04,327 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:14:05,007 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:14:05,010 no previously-included directories found matching '.git' 2026-03-27T04:14:05,013 no previously-included directories found matching '.github' 2026-03-27T04:14:05,016 no previously-included directories found matching '.claude' 2026-03-27T04:14:05,018 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:14:05,021 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:14:05,024 no previously-included directories found matching '.vscode' 2026-03-27T04:14:05,027 no previously-included directories found matching 'docs' 2026-03-27T04:14:05,030 no previously-included directories found matching 'tests' 2026-03-27T04:14:05,033 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:14:05,035 no previously-included directories found matching 'READMEM' 2026-03-27T04:14:05,038 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:14:05,041 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:14:05,044 no previously-included directories found matching 'tmp' 2026-03-27T04:14:05,047 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:14:05,050 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:14:05,056 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:14:05,064 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:14:05,070 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:14:05,071 adding license file 'LICENSE' 2026-03-27T04:14:05,142 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:05,257 Getting requirements to build wheel: finished with status 'done' 2026-03-27T04:14:05,260 Created temporary directory: /tmp/pip-modern-metadata-wr0h6qzk 2026-03-27T04:14:05,263 Preparing metadata (pyproject.toml): started 2026-03-27T04:14:05,265 Running command Preparing metadata (pyproject.toml) 2026-03-27T04:14:05,942 /tmp/pip-build-env-lxmd75kf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:14:05,943 !! 2026-03-27T04:14:05,944 ******************************************************************************** 2026-03-27T04:14:05,945 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:14:05,946 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:14:05,946 or your builds will no longer be supported. 2026-03-27T04:14:05,947 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:14:05,948 ******************************************************************************** 2026-03-27T04:14:05,949 !! 2026-03-27T04:14:05,949 corresp(dist, value, root_dir) 2026-03-27T04:14:06,229 running dist_info 2026-03-27T04:14:06,240 creating /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info 2026-03-27T04:14:06,241 writing /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/PKG-INFO 2026-03-27T04:14:06,259 writing dependency_links to /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/dependency_links.txt 2026-03-27T04:14:06,260 writing entry points to /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/entry_points.txt 2026-03-27T04:14:06,270 writing requirements to /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/requires.txt 2026-03-27T04:14:06,271 writing top-level names to /tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/top_level.txt 2026-03-27T04:14:06,272 writing manifest file '/tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:06,475 reading manifest file '/tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:06,477 reading manifest template 'MANIFEST.in' 2026-03-27T04:14:07,361 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:14:09,030 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:14:09,479 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:14:13,815 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:14:14,266 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:14:14,708 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:14:15,141 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:14:15,598 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:14:16,045 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:14:16,511 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:14:16,515 no previously-included directories found matching '.git' 2026-03-27T04:14:16,518 no previously-included directories found matching '.github' 2026-03-27T04:14:16,521 no previously-included directories found matching '.claude' 2026-03-27T04:14:16,524 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:14:16,527 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:14:16,530 no previously-included directories found matching '.vscode' 2026-03-27T04:14:16,533 no previously-included directories found matching 'docs' 2026-03-27T04:14:16,536 no previously-included directories found matching 'tests' 2026-03-27T04:14:16,539 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:14:16,542 no previously-included directories found matching 'READMEM' 2026-03-27T04:14:16,545 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:14:16,548 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:14:16,551 no previously-included directories found matching 'tmp' 2026-03-27T04:14:16,553 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:14:16,555 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:14:16,560 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:14:16,565 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:14:16,569 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:14:16,570 adding license file 'LICENSE' 2026-03-27T04:14:16,624 writing manifest file '/tmp/pip-modern-metadata-wr0h6qzk/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:16,626 creating '/tmp/pip-modern-metadata-wr0h6qzk/omicverse-2.0.9.dist-info' 2026-03-27T04:14:16,773 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T04:14:16,788 Source in /tmp/pip-wheel-qd0clar7/omicverse_655933ae29d940cabb85090d472d9a4b has version 2.0.9, which satisfies requirement omicverse==2.0.9 from https://files.pythonhosted.org/packages/7a/ea/81f7740737e87d2f4d574e67c76118abf6cc1fc2c3fd5a75bf7eb0270ad7/omicverse-2.0.9.tar.gz 2026-03-27T04:14:16,789 Removed omicverse==2.0.9 from https://files.pythonhosted.org/packages/7a/ea/81f7740737e87d2f4d574e67c76118abf6cc1fc2c3fd5a75bf7eb0270ad7/omicverse-2.0.9.tar.gz from build tracker '/tmp/pip-build-tracker-gixt7bo2' 2026-03-27T04:14:16,813 Created temporary directory: /tmp/pip-unpack-xwwvq_32 2026-03-27T04:14:16,814 Building wheels for collected packages: omicverse 2026-03-27T04:14:16,818 Created temporary directory: /tmp/pip-wheel-lianafak 2026-03-27T04:14:16,818 Destination directory: /tmp/pip-wheel-lianafak 2026-03-27T04:14:16,821 Building wheel for omicverse (pyproject.toml): started 2026-03-27T04:14:16,822 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T04:14:17,456 /tmp/pip-build-env-lxmd75kf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:14:17,456 !! 2026-03-27T04:14:17,457 ******************************************************************************** 2026-03-27T04:14:17,457 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:14:17,459 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:14:17,459 or your builds will no longer be supported. 2026-03-27T04:14:17,460 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:14:17,461 ******************************************************************************** 2026-03-27T04:14:17,462 !! 2026-03-27T04:14:17,463 corresp(dist, value, root_dir) 2026-03-27T04:14:17,730 running bdist_wheel 2026-03-27T04:14:17,750 running build 2026-03-27T04:14:17,751 running build_py 2026-03-27T04:14:17,757 creating build/lib/omicverse 2026-03-27T04:14:17,759 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T04:14:17,763 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T04:14:17,765 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T04:14:17,768 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T04:14:17,771 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T04:14:17,773 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T04:14:17,776 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T04:14:17,780 creating build/lib/omicverse/popv 2026-03-27T04:14:17,781 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,783 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,786 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,788 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,791 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,793 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T04:14:17,796 creating build/lib/omicverse/io 2026-03-27T04:14:17,797 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T04:14:17,800 creating build/lib/omicverse/space 2026-03-27T04:14:17,801 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T04:14:17,804 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T04:14:17,806 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T04:14:17,808 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T04:14:17,811 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T04:14:17,814 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T04:14:17,816 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T04:14:17,819 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T04:14:17,823 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T04:14:17,824 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T04:14:17,827 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T04:14:17,830 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T04:14:17,833 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T04:14:17,836 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T04:14:17,839 creating build/lib/omicverse/jarvis 2026-03-27T04:14:17,840 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,843 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,844 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,846 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,849 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,851 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,853 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,855 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,857 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,860 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,862 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,866 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,869 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T04:14:17,871 creating build/lib/omicverse/bulk 2026-03-27T04:14:17,872 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,874 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,876 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,879 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,882 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,903 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,905 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,907 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,911 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,914 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,916 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T04:14:17,919 creating build/lib/omicverse/external 2026-03-27T04:14:17,921 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T04:14:17,923 creating build/lib/omicverse/bulk2single 2026-03-27T04:14:17,924 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,926 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,929 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,931 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,934 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,937 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,939 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,942 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,944 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,946 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T04:14:17,950 creating build/lib/omicverse/pp 2026-03-27T04:14:17,951 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,953 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,955 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,957 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,959 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,962 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,964 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,967 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,969 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,972 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,975 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,977 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,979 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,982 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,985 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,987 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,990 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,992 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,994 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,996 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T04:14:17,998 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T04:14:18,001 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T04:14:18,004 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T04:14:18,008 creating build/lib/omicverse/pl 2026-03-27T04:14:18,009 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,012 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,014 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,020 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,023 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,026 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,029 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,032 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,035 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,038 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,041 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,044 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,046 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,049 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,052 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,055 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,057 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,061 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,064 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,066 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T04:14:18,071 creating build/lib/omicverse/biocontext 2026-03-27T04:14:18,071 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T04:14:18,073 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T04:14:18,076 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T04:14:18,078 creating build/lib/omicverse/alignment 2026-03-27T04:14:18,079 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,082 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,084 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,086 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,089 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,091 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,093 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,095 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,097 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T04:14:18,100 creating build/lib/omicverse/datasets 2026-03-27T04:14:18,101 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T04:14:18,103 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T04:14:18,106 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T04:14:18,108 creating build/lib/omicverse/fm 2026-03-27T04:14:18,109 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T04:14:18,111 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T04:14:18,114 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T04:14:18,116 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T04:14:18,119 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T04:14:18,122 creating build/lib/omicverse/llm 2026-03-27T04:14:18,123 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,125 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,127 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,130 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,134 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,136 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,140 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,142 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,146 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,149 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,151 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,155 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T04:14:18,161 creating build/lib/omicverse/utils 2026-03-27T04:14:18,162 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,164 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,166 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,169 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,171 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,174 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,177 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,179 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,184 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,186 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,189 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,190 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,193 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,195 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,197 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,200 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,202 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,205 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,207 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,210 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,212 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,213 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,216 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,219 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,222 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,225 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,227 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,231 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,233 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,237 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,240 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,243 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,245 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,247 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T04:14:18,252 creating build/lib/omicverse/single 2026-03-27T04:14:18,253 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T04:14:18,261 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T04:14:18,264 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T04:14:18,267 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T04:14:18,269 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T04:14:18,272 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T04:14:18,273 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T04:14:18,275 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T04:14:18,278 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T04:14:18,281 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T04:14:18,284 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T04:14:18,286 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T04:14:18,289 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T04:14:18,292 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T04:14:18,294 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T04:14:18,297 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T04:14:18,299 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T04:14:18,306 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T04:14:18,309 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T04:14:18,311 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T04:14:18,314 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T04:14:18,316 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T04:14:18,319 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T04:14:18,322 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T04:14:18,324 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T04:14:18,326 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T04:14:18,329 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T04:14:18,332 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T04:14:18,334 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T04:14:18,337 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T04:14:18,339 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T04:14:18,343 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T04:14:18,346 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T04:14:18,349 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T04:14:18,352 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T04:14:18,355 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T04:14:18,358 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T04:14:18,360 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T04:14:18,364 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T04:14:18,367 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T04:14:18,370 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T04:14:18,372 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T04:14:18,374 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T04:14:18,377 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T04:14:18,380 creating build/lib/omicverse/mcp 2026-03-27T04:14:18,381 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,383 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,385 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,387 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,389 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,392 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,395 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,397 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,401 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,403 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,405 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,408 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,410 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T04:14:18,413 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,414 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,416 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,418 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,420 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,422 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,424 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,426 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,428 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,430 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:18,433 creating build/lib/omicverse/agent 2026-03-27T04:14:18,434 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T04:14:18,436 creating build/lib/omicverse/data_files 2026-03-27T04:14:18,437 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T04:14:18,440 creating build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,441 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,443 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,445 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,447 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,449 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,451 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,453 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,455 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,458 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,460 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,463 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,465 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:14:18,468 creating build/lib/omicverse/popv/hub 2026-03-27T04:14:18,469 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T04:14:18,471 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T04:14:18,473 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T04:14:18,475 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T04:14:18,477 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T04:14:18,479 creating build/lib/omicverse/io/bulk 2026-03-27T04:14:18,480 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T04:14:18,483 creating build/lib/omicverse/io/spatial 2026-03-27T04:14:18,484 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T04:14:18,485 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T04:14:18,488 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T04:14:18,491 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T04:14:18,493 creating build/lib/omicverse/io/single 2026-03-27T04:14:18,494 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T04:14:18,497 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T04:14:18,499 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T04:14:18,502 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T04:14:18,504 creating build/lib/omicverse/io/general 2026-03-27T04:14:18,505 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T04:14:18,507 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T04:14:18,508 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T04:14:18,510 creating build/lib/omicverse/jarvis/memory 2026-03-27T04:14:18,511 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T04:14:18,513 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T04:14:18,516 creating build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,517 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,519 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,522 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,524 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,526 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,528 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,530 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:14:18,532 creating build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,533 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,535 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,538 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,541 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,544 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,549 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,555 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:14:18,562 creating build/lib/omicverse/jarvis/gateway 2026-03-27T04:14:18,563 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:14:18,565 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:14:18,567 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:14:18,569 creating build/lib/omicverse/bulk/_alignment 2026-03-27T04:14:18,570 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T04:14:18,573 creating build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,574 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,576 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,578 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,581 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,582 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,584 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:14:18,587 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,588 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,590 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,592 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,595 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,597 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:14:18,599 creating build/lib/omicverse/external/scSLAT 2026-03-27T04:14:18,601 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:14:18,602 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:14:18,605 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:14:18,607 creating build/lib/omicverse/external/cytotrace2 2026-03-27T04:14:18,608 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:14:18,611 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:14:18,612 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:14:18,615 creating build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,616 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,618 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,620 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,623 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,625 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,628 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,630 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,633 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,636 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,639 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:14:18,641 creating build/lib/omicverse/external/bin2cell 2026-03-27T04:14:18,642 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T04:14:18,644 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T04:14:18,649 creating build/lib/omicverse/external/scMulan 2026-03-27T04:14:18,650 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:14:18,652 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:14:18,654 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:14:18,657 creating build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,658 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,660 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,662 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,665 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,667 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,671 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,673 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,677 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,680 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,682 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,685 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,689 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,693 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,698 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,701 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:14:18,704 creating build/lib/omicverse/external/scdiffusion 2026-03-27T04:14:18,705 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:14:18,708 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:14:18,711 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:14:18,714 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:14:18,718 creating build/lib/omicverse/external/GNTD 2026-03-27T04:14:18,720 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:14:18,723 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:14:18,726 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:14:18,729 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:14:18,733 creating build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,734 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,737 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,739 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,742 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,745 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,747 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,750 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:14:18,753 creating build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,755 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,758 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,761 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,764 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,767 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:18,770 creating build/lib/omicverse/external/somde 2026-03-27T04:14:18,772 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T04:14:18,774 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T04:14:18,777 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T04:14:18,780 creating build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,781 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,783 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,786 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,788 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,791 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,793 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:18,796 creating build/lib/omicverse/external/cellanova 2026-03-27T04:14:18,798 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:14:18,800 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:14:18,803 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:14:18,805 creating build/lib/omicverse/external/flowsig 2026-03-27T04:14:18,806 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T04:14:18,809 creating build/lib/omicverse/external/datacollect 2026-03-27T04:14:18,811 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:14:18,813 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:14:18,816 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:14:18,819 creating build/lib/omicverse/external/tosica 2026-03-27T04:14:18,821 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T04:14:18,823 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T04:14:18,826 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T04:14:18,828 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T04:14:18,831 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T04:14:18,834 creating build/lib/omicverse/external/gaston 2026-03-27T04:14:18,836 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,838 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,840 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,842 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,844 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,847 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,849 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,851 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,854 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,857 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,859 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,862 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,865 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,868 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,870 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,872 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T04:14:18,875 creating build/lib/omicverse/external/bulk2single 2026-03-27T04:14:18,876 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T04:14:18,879 creating build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,881 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,883 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,886 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,888 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,890 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,893 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:14:18,896 creating build/lib/omicverse/external/scanorama 2026-03-27T04:14:18,897 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:14:18,899 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:14:18,903 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:14:18,906 creating build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,907 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,911 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,913 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,916 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,919 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,922 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,925 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,928 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,931 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:14:18,934 creating build/lib/omicverse/external/BINARY 2026-03-27T04:14:18,936 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:14:18,938 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:14:18,940 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:14:18,943 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:14:18,946 creating build/lib/omicverse/external/mofapy2 2026-03-27T04:14:18,948 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:14:18,950 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:14:18,952 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:14:18,955 creating build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,956 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,958 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,961 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,964 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,966 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,969 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,972 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,974 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,976 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,979 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,981 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,983 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,987 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:14:18,989 creating build/lib/omicverse/external/cnmf 2026-03-27T04:14:18,990 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T04:14:18,993 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T04:14:18,998 creating build/lib/omicverse/external/topact 2026-03-27T04:14:18,999 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,002 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,004 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,007 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,010 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,012 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,015 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,018 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T04:14:19,020 creating build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,022 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,025 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,027 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,029 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,032 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,035 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,037 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,040 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:14:19,043 creating build/lib/omicverse/external/CAST 2026-03-27T04:14:19,044 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,046 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,049 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,052 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,055 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,057 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,060 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T04:14:19,063 creating build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,065 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,067 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,070 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,072 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,075 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:14:19,078 creating build/lib/omicverse/external/spaceflow 2026-03-27T04:14:19,079 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:14:19,081 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:14:19,084 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:14:19,086 creating build/lib/omicverse/external/tape 2026-03-27T04:14:19,088 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,091 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,093 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,095 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,098 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,100 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T04:14:19,103 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,105 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,107 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,114 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,117 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,120 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:14:19,123 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,124 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,127 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,129 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,131 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,134 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:14:19,137 creating build/lib/omicverse/external/PROST 2026-03-27T04:14:19,138 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,141 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,143 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,146 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,149 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,152 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,154 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T04:14:19,158 creating build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,159 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,162 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,164 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,167 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,169 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,172 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,174 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:14:19,177 creating build/lib/omicverse/external/mpl_chord 2026-03-27T04:14:19,179 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:14:19,181 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:14:19,184 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:14:19,188 creating build/lib/omicverse/external/palantir 2026-03-27T04:14:19,189 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,191 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,193 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,196 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,199 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,201 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,203 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,207 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,210 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,212 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,215 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T04:14:19,218 creating build/lib/omicverse/external/nocd 2026-03-27T04:14:19,220 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,222 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,224 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,226 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,229 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,231 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T04:14:19,234 creating build/lib/omicverse/external/STT 2026-03-27T04:14:19,235 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T04:14:19,238 creating build/lib/omicverse/external/spaco 2026-03-27T04:14:19,240 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,242 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,244 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,246 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,249 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,251 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,254 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,256 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,258 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T04:14:19,262 creating build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,263 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,265 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,267 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,271 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,273 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,276 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,279 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,282 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,285 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,287 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,290 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,292 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:14:19,296 creating build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,297 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,300 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,302 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,305 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,308 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,311 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,313 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,316 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,319 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:14:19,323 creating build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,324 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,327 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,329 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,332 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,334 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,337 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,339 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,342 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,344 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,346 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,348 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:14:19,352 creating build/lib/omicverse/external/harmony 2026-03-27T04:14:19,353 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T04:14:19,354 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T04:14:19,357 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T04:14:19,360 creating build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,361 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,363 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,365 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,367 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,370 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,372 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,375 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,377 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,379 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:14:19,382 creating build/lib/omicverse/external/commot 2026-03-27T04:14:19,383 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T04:14:19,386 creating build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,387 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,389 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,390 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,393 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,395 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,397 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,399 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,401 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,403 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,405 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,407 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,409 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,411 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,412 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,415 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,417 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,419 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,421 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,423 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,425 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,429 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:14:19,431 creating build/lib/omicverse/external/scrublet 2026-03-27T04:14:19,432 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:14:19,434 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:14:19,437 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:14:19,440 creating build/lib/omicverse/external/VIA 2026-03-27T04:14:19,441 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,443 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,447 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,449 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,456 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,461 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,467 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T04:14:19,469 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:14:19,470 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:14:19,472 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:14:19,475 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:14:19,477 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,478 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,480 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,482 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,484 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,486 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,488 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,490 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,493 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:14:19,495 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:19,496 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:19,498 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:19,500 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:19,501 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:19,503 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:19,506 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:19,508 creating build/lib/omicverse/external/scMulan/model 2026-03-27T04:14:19,509 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T04:14:19,512 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T04:14:19,514 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T04:14:19,515 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T04:14:19,517 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T04:14:19,520 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:19,521 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:19,525 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,526 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,528 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,530 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,532 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,534 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,536 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,537 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,540 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,542 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,544 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,546 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,548 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,551 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,553 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,555 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,558 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,559 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,562 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:19,564 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:14:19,565 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:14:19,567 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:14:19,569 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:14:19,571 creating build/lib/omicverse/external/space/cell2location 2026-03-27T04:14:19,573 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T04:14:19,575 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T04:14:19,577 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:19,578 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:19,580 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:19,582 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:19,584 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:19,586 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:19,587 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:19,589 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:19,592 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,592 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,594 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,597 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,598 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,601 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:19,604 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:14:19,604 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:14:19,606 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:14:19,609 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:14:19,612 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:14:19,613 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:14:19,616 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:14:19,619 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:14:19,622 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,622 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,624 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,626 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,629 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,632 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,635 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,637 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,641 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:14:19,645 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,646 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,648 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,651 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,655 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,660 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:19,666 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:19,668 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:19,671 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:19,674 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:19,677 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,678 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,681 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,683 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,685 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,687 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:19,690 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:19,691 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:19,693 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:19,696 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:19,699 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:19,700 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:19,702 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:19,704 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:19,707 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:14:19,708 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:14:19,710 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:14:19,712 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,713 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,715 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,717 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,719 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,721 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,724 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:19,727 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:14:19,728 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:14:19,730 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:14:19,733 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T04:14:19,734 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:14:19,735 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:14:19,738 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:14:19,741 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:14:19,743 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,744 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,747 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,749 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,751 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,753 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,756 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,758 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,760 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,763 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,766 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,768 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,770 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,776 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,778 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,781 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,783 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,785 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,787 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,789 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,792 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,794 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,796 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:14:19,799 creating build/lib/omicverse/external/datacollect/config 2026-03-27T04:14:19,800 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T04:14:19,802 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T04:14:19,806 creating build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,807 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,809 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,811 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,813 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,815 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,818 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,820 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,822 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,825 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,827 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,829 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,831 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,834 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,836 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,839 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,841 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,843 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,845 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,848 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,850 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,852 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,854 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,856 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,858 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,861 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,863 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,865 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,868 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,870 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,872 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,875 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,877 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,879 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,882 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:14:19,885 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,886 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,887 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,890 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,892 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,894 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,896 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:14:19,899 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,900 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,902 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,904 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,907 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,909 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,911 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,913 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:19,916 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,917 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,919 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,921 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,923 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,925 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,928 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,930 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,932 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:19,935 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:19,936 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:19,938 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:19,940 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:19,942 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:19,945 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,946 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,948 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,950 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,953 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,955 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,957 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:14:19,960 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,961 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,963 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,965 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,968 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,970 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,972 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,975 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,977 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,979 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:19,982 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,983 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,985 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,987 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,989 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,991 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:19,994 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:19,995 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:19,997 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:19,999 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,002 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,005 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,008 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,010 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,013 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,015 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,019 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:20,021 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,022 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,024 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,025 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,027 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,029 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,032 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,034 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,036 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,037 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,040 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,042 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,044 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:20,047 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T04:14:20,048 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T04:14:20,049 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T04:14:20,053 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:14:20,054 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:14:20,055 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:14:20,058 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,059 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,061 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,062 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,065 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,068 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,071 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:14:20,073 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,074 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,077 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,079 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,081 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,083 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:14:20,086 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,087 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,089 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,092 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,094 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,096 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,099 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,101 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,103 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,106 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,109 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,111 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,114 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,117 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,120 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,122 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,125 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,127 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,130 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:20,134 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,135 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,138 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,140 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,142 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,144 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,147 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,150 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,152 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,155 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,157 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,160 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:20,163 creating build/lib/omicverse/external/CAST/model 2026-03-27T04:14:20,164 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:14:20,166 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:14:20,168 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:14:20,171 creating build/lib/omicverse/external/single/arboreto 2026-03-27T04:14:20,173 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:14:20,175 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:14:20,178 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:14:20,181 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:14:20,184 creating build/lib/omicverse/external/nocd/nn 2026-03-27T04:14:20,186 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:14:20,189 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:14:20,191 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:14:20,194 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:14:20,198 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T04:14:20,199 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:14:20,202 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:14:20,205 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:14:20,208 creating build/lib/omicverse/external/STT/pl 2026-03-27T04:14:20,209 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:14:20,213 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:14:20,215 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:14:20,218 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:14:20,221 creating build/lib/omicverse/external/STT/tl 2026-03-27T04:14:20,222 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:14:20,224 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:14:20,227 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:14:20,229 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:14:20,233 creating build/lib/omicverse/external/spaco/external 2026-03-27T04:14:20,234 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T04:14:20,237 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T04:14:20,240 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:20,241 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:20,245 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,246 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,248 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,250 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,253 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,257 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:20,261 creating build/lib/omicverse/external/commot/plotting 2026-03-27T04:14:20,262 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:14:20,265 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:14:20,267 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:14:20,271 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:14:20,272 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:14:20,275 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:14:20,277 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:14:20,280 creating build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,281 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,284 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,286 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,287 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,290 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:14:20,292 creating build/lib/omicverse/external/commot/tools 2026-03-27T04:14:20,293 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:14:20,295 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:14:20,299 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:14:20,303 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:14:20,304 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:14:20,306 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:14:20,308 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:14:20,311 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:14:20,312 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:14:20,314 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:14:20,316 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:14:20,319 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,320 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,322 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,323 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,325 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,327 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:14:20,330 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,331 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,334 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,336 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,337 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,340 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,342 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,345 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,347 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:14:20,350 creating build/lib/omicverse/pp/experimental 2026-03-27T04:14:20,351 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:14:20,353 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:14:20,356 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:14:20,358 creating build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,359 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,361 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,363 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,365 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,367 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,369 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,371 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,374 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:14:20,376 creating build/lib/omicverse/llm/dr 2026-03-27T04:14:20,377 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,379 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,381 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,383 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,385 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,387 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T04:14:20,389 creating build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,390 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,392 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,395 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,397 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,398 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,401 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:14:20,403 creating build/lib/omicverse/llm/domain_research 2026-03-27T04:14:20,404 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T04:14:20,407 creating build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,408 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,409 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,412 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,414 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,416 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,418 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:14:20,420 creating build/lib/omicverse/llm/utils 2026-03-27T04:14:20,421 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T04:14:20,423 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T04:14:20,425 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T04:14:20,428 creating build/lib/omicverse/llm/CellPLM 2026-03-27T04:14:20,428 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T04:14:20,431 creating build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:20,431 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:20,434 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:20,436 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:20,437 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:20,440 creating build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,441 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,445 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,447 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,449 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,452 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,454 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,457 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,462 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,465 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,468 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,470 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,473 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:14:20,476 creating build/lib/omicverse/llm/dr/verify 2026-03-27T04:14:20,477 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T04:14:20,479 creating build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,480 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,482 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,484 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,486 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,488 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:14:20,490 creating build/lib/omicverse/llm/dr/write 2026-03-27T04:14:20,491 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:14:20,493 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:14:20,495 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:14:20,498 creating build/lib/omicverse/llm/dr/research 2026-03-27T04:14:20,499 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:14:20,501 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:14:20,503 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:14:20,505 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:14:20,506 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:14:20,508 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:14:20,512 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,513 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,515 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,516 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,519 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,521 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:14:20,523 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:20,524 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:20,526 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:20,529 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,530 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,532 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,535 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,537 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,539 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,541 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:14:20,544 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:14:20,545 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:14:20,548 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:14:20,550 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:14:20,552 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:14:20,553 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:14:20,555 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:14:20,558 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T04:14:20,559 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T04:14:20,562 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T04:14:20,563 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T04:14:20,565 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,566 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,569 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,571 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,574 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,576 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:14:20,579 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:14:20,580 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:14:20,582 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:14:20,584 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:14:20,586 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:14:20,587 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:14:20,589 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:14:20,591 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:14:20,593 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:14:20,594 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:14:20,596 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:14:20,597 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:14:20,600 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:14:20,602 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:14:20,603 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:14:20,605 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:14:20,607 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:14:20,608 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:14:20,610 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:14:20,613 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:14:20,614 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:14:20,616 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:14:20,617 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:14:20,620 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,621 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,623 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,625 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,628 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,630 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:14:20,633 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:14:20,634 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:14:20,636 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:14:20,639 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,640 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,643 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,645 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,647 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,649 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,651 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:14:20,654 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,655 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,657 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,660 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,662 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,664 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:20,666 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,667 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,669 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,671 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,673 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,675 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,677 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,679 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:20,682 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,683 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,685 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,687 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,689 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,691 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,693 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,696 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:14:20,699 creating build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,700 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,703 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,705 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,709 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,711 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,714 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,716 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,719 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,722 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,724 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,727 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,729 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,731 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:14:20,735 creating build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,736 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,738 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,740 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,742 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,745 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,747 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,750 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,753 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,754 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:20,757 creating build/lib/omicverse/utils/harness 2026-03-27T04:14:20,758 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,760 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,762 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,764 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,767 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,769 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,771 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T04:14:20,774 creating build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,775 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,777 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,780 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,782 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,785 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,787 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,789 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,792 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,795 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,797 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,800 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,802 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,805 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,808 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,810 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:14:20,813 creating build/lib/omicverse/single/templates 2026-03-27T04:14:20,814 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T04:14:20,816 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T04:14:20,819 creating build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,820 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,821 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,823 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,825 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,827 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:14:20,832 running egg_info 2026-03-27T04:14:20,842 writing omicverse.egg-info/PKG-INFO 2026-03-27T04:14:20,859 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T04:14:20,861 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T04:14:20,870 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T04:14:20,871 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T04:14:21,056 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:21,117 reading manifest template 'MANIFEST.in' 2026-03-27T04:14:22,038 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:14:23,624 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:14:24,089 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:14:28,780 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:14:29,236 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:14:29,692 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:14:30,138 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:14:30,600 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:14:31,340 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:14:31,843 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:14:31,846 no previously-included directories found matching '.git' 2026-03-27T04:14:31,849 no previously-included directories found matching '.github' 2026-03-27T04:14:31,852 no previously-included directories found matching '.claude' 2026-03-27T04:14:31,855 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:14:31,858 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:14:31,861 no previously-included directories found matching '.vscode' 2026-03-27T04:14:31,863 no previously-included directories found matching 'docs' 2026-03-27T04:14:31,866 no previously-included directories found matching 'tests' 2026-03-27T04:14:31,869 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:14:31,872 no previously-included directories found matching 'READMEM' 2026-03-27T04:14:31,875 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:14:31,878 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:14:31,881 no previously-included directories found matching 'tmp' 2026-03-27T04:14:31,884 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:14:31,887 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:14:31,893 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:14:31,901 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:14:31,907 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:14:31,910 adding license file 'LICENSE' 2026-03-27T04:14:31,978 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:14:32,078 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T04:14:32,081 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T04:14:32,083 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T04:14:32,085 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T04:14:32,088 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T04:14:32,090 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:14:32,093 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T04:14:32,095 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T04:14:32,101 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T04:14:32,103 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T04:14:32,180 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T04:14:32,182 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:14:32,184 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T04:14:32,187 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T04:14:32,190 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:33,539 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:33,564 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:14:33,566 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,567 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,571 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,573 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,576 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,578 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,581 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,584 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,587 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,590 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,593 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,595 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,598 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:14:33,601 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:33,607 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:33,608 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:33,692 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:33,697 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:33,702 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:33,703 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:33,711 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:33,718 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:33,726 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:33,726 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:33,745 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:33,764 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:33,782 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:33,785 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:33,787 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:33,790 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:14:33,793 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:33,795 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:33,799 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:33,802 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:33,803 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:33,807 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:33,812 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:33,816 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:33,823 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:33,825 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:33,828 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:14:33,831 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:33,854 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:33,873 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T04:14:33,874 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T04:14:33,876 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T04:14:33,878 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T04:14:33,881 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T04:14:33,883 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T04:14:33,886 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T04:14:33,888 creating build/lib/omicverse/single/templates/img 2026-03-27T04:14:33,889 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T04:14:33,891 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:14:33,894 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:14:33,897 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:14:33,900 creating build/lib/omicverse/data_files/TF 2026-03-27T04:14:33,901 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:14:33,904 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:14:33,906 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:14:33,917 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T04:14:33,932 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T04:14:34,045 installing to build/bdist.linux-armv7l/wheel 2026-03-27T04:14:34,046 running install 2026-03-27T04:14:34,069 running install_lib 2026-03-27T04:14:34,074 creating build/bdist.linux-armv7l/wheel 2026-03-27T04:14:34,077 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T04:14:34,078 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:34,081 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:34,083 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T04:14:34,084 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,087 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T04:14:34,089 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,091 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,093 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,096 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,098 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,101 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,104 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,106 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,109 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,111 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,113 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,115 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:14:34,117 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,120 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,122 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,124 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,127 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T04:14:34,128 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:14:34,129 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:14:34,131 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:14:34,133 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:14:34,136 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:14:34,138 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:14:34,140 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:34,143 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T04:14:34,144 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T04:14:34,147 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T04:14:34,148 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T04:14:34,151 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T04:14:34,152 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:14:34,154 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:14:34,157 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:14:34,161 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:14:34,164 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T04:14:34,165 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:14:34,167 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:14:34,169 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:14:34,172 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:14:34,174 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T04:14:34,176 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:14:34,178 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:14:34,180 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:14:34,182 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T04:14:34,183 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,186 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,187 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,189 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,192 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,196 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,199 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,202 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,205 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,207 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,209 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,212 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,215 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,217 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:14:34,220 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T04:14:34,221 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,224 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,226 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T04:14:34,227 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T04:14:34,229 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T04:14:34,231 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,233 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,236 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,238 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,241 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,244 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T04:14:34,246 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,248 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,250 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,252 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,254 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,255 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,257 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:14:34,259 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,262 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T04:14:34,263 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,264 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,267 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,270 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,273 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,277 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,279 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:14:34,283 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,285 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,287 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,290 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,292 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,296 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,298 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,300 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,303 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T04:14:34,304 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:14:34,307 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:14:34,309 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:14:34,311 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:14:34,313 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:34,316 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T04:14:34,317 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,320 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T04:14:34,321 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T04:14:34,323 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,325 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,328 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,330 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,342 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,344 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,346 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,349 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,352 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,354 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:14:34,358 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T04:14:34,359 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T04:14:34,360 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,362 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,365 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,367 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,369 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,371 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:14:34,374 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,375 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,377 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,379 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,381 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,383 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:14:34,385 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T04:14:34,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T04:14:34,389 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:14:34,391 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T04:14:34,392 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:14:34,394 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:14:34,397 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:14:34,400 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T04:14:34,402 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,404 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:34,408 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:34,411 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T04:14:34,413 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,415 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,417 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,420 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,423 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:34,424 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:34,427 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:34,429 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:14:34,432 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,435 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:14:34,438 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:14:34,440 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:14:34,443 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T04:14:34,444 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:14:34,447 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:14:34,450 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:14:34,453 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T04:14:34,454 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,456 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,459 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,462 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,465 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,469 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,471 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,475 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,478 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,481 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:14:34,485 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T04:14:34,486 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T04:14:34,488 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T04:14:34,494 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T04:14:34,496 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:14:34,498 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:14:34,501 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T04:14:34,503 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T04:14:34,506 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T04:14:34,508 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:14:34,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T04:14:34,513 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T04:14:34,516 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T04:14:34,519 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T04:14:34,521 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:34,523 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:34,799 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:35,248 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:14:35,252 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T04:14:35,253 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,255 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,257 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,260 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,262 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,265 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,267 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,270 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,273 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,276 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,278 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,281 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,283 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,286 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,287 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:14:35,290 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T04:14:35,291 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,293 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,295 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,297 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,299 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,301 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,302 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,304 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,306 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,309 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,311 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,313 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,315 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,318 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,320 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,322 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,325 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,327 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,329 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:14:35,331 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:14:35,333 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T04:14:35,334 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:14:35,336 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:14:35,338 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:14:35,340 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:14:35,342 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:14:35,344 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:14:35,347 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T04:14:35,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T04:14:35,350 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T04:14:35,352 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:35,353 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:35,355 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:35,357 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:35,359 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:14:35,362 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:35,363 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:35,365 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T04:14:35,367 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T04:14:35,370 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,371 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,373 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,376 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,377 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,380 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:14:35,383 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T04:14:35,384 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:14:35,385 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:14:35,388 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:14:35,390 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T04:14:35,391 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:14:35,393 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:14:35,396 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:14:35,398 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,399 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,401 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,403 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,405 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,408 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,410 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,412 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,414 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:14:35,417 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T04:14:35,418 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,421 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:35,422 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:35,423 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:35,426 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:14:35,428 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,430 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,433 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,436 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,439 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:14:35,441 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,442 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,445 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,446 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,448 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,451 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:14:35,454 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:35,455 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:35,458 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:35,460 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:14:35,463 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:35,464 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:35,466 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:35,470 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:14:35,473 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T04:14:35,474 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:14:35,477 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:14:35,479 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:14:35,481 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:14:35,484 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T04:14:35,485 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,487 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,489 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,491 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,493 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,495 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,497 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:14:35,500 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T04:14:35,501 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,503 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,504 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,507 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,509 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,511 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:14:35,514 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T04:14:35,515 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:14:35,517 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:14:35,519 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:14:35,522 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T04:14:35,523 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,525 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,526 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,528 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,531 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,533 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,534 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:14:35,537 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T04:14:35,538 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:14:35,540 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:14:35,542 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:14:35,545 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T04:14:35,546 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T04:14:35,548 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T04:14:35,549 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T04:14:35,552 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T04:14:35,554 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,555 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,557 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,559 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,561 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,563 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,565 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:14:35,569 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T04:14:35,570 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T04:14:35,572 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T04:14:35,574 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T04:14:35,575 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:14:35,577 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:14:35,580 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:14:35,583 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:14:35,585 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T04:14:35,586 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:14:35,589 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T04:14:35,590 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,592 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,594 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,596 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,598 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,600 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,603 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,605 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,608 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,610 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,612 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,615 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,617 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,620 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,622 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,624 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,626 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,628 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,631 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,633 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,635 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,638 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:14:35,640 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T04:14:35,641 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T04:14:35,643 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T04:14:35,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T04:14:35,646 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,649 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,651 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,653 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,655 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,658 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,660 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,662 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,665 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,667 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,669 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,672 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:14:35,674 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:14:35,677 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:14:35,679 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:14:35,681 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:14:35,685 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T04:14:35,686 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,688 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,690 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,692 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,695 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,697 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,700 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,701 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,703 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,705 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,707 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,709 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,711 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,713 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:14:35,715 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,718 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,720 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,722 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,724 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,726 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,729 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,731 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,733 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,735 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,738 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,740 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,743 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,745 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,747 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,749 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,751 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,754 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,756 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,757 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,759 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,761 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,764 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,766 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,768 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,771 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,773 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:14:35,775 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,778 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,780 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,783 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T04:14:35,784 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:14:35,786 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:14:35,788 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:14:35,791 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:14:35,793 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,796 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,798 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,800 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,802 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,805 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,808 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,809 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,810 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,813 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,815 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,817 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,819 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:14:35,821 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:14:35,824 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,825 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,827 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,830 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,832 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,835 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,837 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,839 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,842 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,844 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:14:35,847 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T04:14:35,848 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,850 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,852 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,854 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,857 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,858 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:14:35,861 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T04:14:35,862 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:14:35,865 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:14:35,866 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:14:35,869 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:14:35,871 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:14:35,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T04:14:35,875 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,877 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,879 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,881 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,882 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,884 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,886 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,888 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,891 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,893 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,895 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,899 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,902 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,904 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,906 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,908 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:14:35,910 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T04:14:35,911 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T04:14:35,913 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,914 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,916 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,919 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,921 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,922 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:14:35,925 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,926 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,928 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,930 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,933 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,940 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,943 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,946 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,948 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,951 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,953 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,956 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:14:35,959 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:35,960 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:35,962 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:35,963 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:35,968 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:35,975 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:14:36,087 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,089 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,091 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,094 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,097 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,100 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,103 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,105 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,108 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,110 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,113 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:14:36,116 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T04:14:36,117 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,120 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,122 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,124 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,125 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,128 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:14:36,131 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T04:14:36,132 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:14:36,134 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:14:36,137 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:14:36,140 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T04:14:36,141 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,144 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,146 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,148 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,151 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,153 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,156 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,158 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,160 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:14:36,163 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T04:14:36,164 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:14:36,166 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:14:36,168 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:14:36,171 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:14:36,174 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T04:14:36,175 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:14:36,177 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:14:36,179 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T04:14:36,180 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T04:14:36,182 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T04:14:36,186 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:36,187 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:36,188 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:36,207 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:36,231 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:14:36,254 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:36,264 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:36,272 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:14:36,280 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:14:36,282 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T04:14:36,283 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T04:14:36,284 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T04:14:36,287 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,288 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,289 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,291 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,293 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,296 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,298 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:14:36,300 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T04:14:36,301 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:14:36,304 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:14:36,306 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,307 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,310 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,312 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,314 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,316 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,318 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,321 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,323 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,325 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,328 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,330 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,332 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,335 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,337 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,339 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,342 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,343 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,346 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:14:36,348 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:14:36,350 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,351 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,354 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,355 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,357 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,359 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,361 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,364 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,366 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,367 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,369 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,372 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:14:36,373 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:14:36,375 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:14:36,378 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T04:14:36,379 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,381 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,382 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,385 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,387 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,389 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,391 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,392 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,394 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,396 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,398 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,400 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,402 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:14:36,405 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T04:14:36,406 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T04:14:36,408 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T04:14:36,412 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T04:14:36,413 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,416 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,418 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,420 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,423 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,425 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,427 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,429 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:14:36,431 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T04:14:36,432 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,435 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,437 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,438 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,441 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,443 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,445 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,447 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:14:36,450 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T04:14:36,451 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,453 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,455 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,457 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,460 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T04:14:36,461 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:14:36,462 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:14:36,464 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:14:36,466 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,468 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,471 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:14:36,474 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T04:14:36,475 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:14:36,477 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:14:36,479 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:14:36,481 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:14:36,484 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:14:36,486 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T04:14:36,487 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:14:36,489 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:14:36,492 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:14:36,494 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T04:14:36,495 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,498 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,499 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,502 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,504 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,506 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:14:36,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T04:14:36,510 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:14:36,512 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:14:36,517 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:14:36,520 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:14:36,522 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:14:36,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T04:14:36,525 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:14:36,527 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:14:36,528 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:14:36,531 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:14:36,533 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:14:36,536 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T04:14:36,537 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,539 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,541 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,543 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,545 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,547 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,550 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:14:36,553 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T04:14:36,554 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,556 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,558 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,560 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,563 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,565 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,567 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:14:36,570 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T04:14:36,571 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:14:36,573 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:14:36,575 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:14:36,578 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T04:14:36,579 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T04:14:36,581 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:14:36,582 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:14:36,584 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:14:36,586 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:14:36,589 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T04:14:36,590 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,592 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,593 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,595 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,598 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,600 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,602 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,606 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,608 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,610 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,613 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:14:36,615 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T04:14:36,616 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,618 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,620 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,622 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T04:14:36,623 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:14:36,625 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:14:36,627 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:14:36,629 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:14:36,632 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T04:14:36,633 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:14:36,634 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:14:36,636 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:14:36,638 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,640 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,642 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:14:36,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T04:14:36,646 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T04:14:36,648 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T04:14:36,649 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:14:36,652 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:14:36,653 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:14:36,656 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:14:36,659 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T04:14:36,660 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:14:36,661 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:14:36,664 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:14:36,666 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:14:36,669 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T04:14:36,670 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,672 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,674 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,676 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,679 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T04:14:36,680 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T04:14:36,682 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T04:14:36,685 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,686 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,688 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,690 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,692 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:14:36,695 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T04:14:36,696 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,698 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,700 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,703 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,705 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,707 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,710 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,712 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,714 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,716 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,718 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,720 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:14:36,724 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T04:14:36,725 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,727 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,729 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,732 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,734 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,737 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T04:14:36,738 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:14:36,741 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:14:36,743 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:14:36,745 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:14:36,747 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:14:36,750 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,753 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,755 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,757 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:14:36,761 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T04:14:36,762 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,764 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,766 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,768 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,771 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,773 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,775 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,777 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,779 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,782 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,784 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:14:36,787 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T04:14:36,788 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:14:36,790 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:14:36,793 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:14:36,796 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T04:14:36,797 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,799 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,801 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,804 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,806 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,808 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,812 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,814 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,817 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:14:36,821 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T04:14:36,822 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T04:14:36,825 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,826 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,828 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,831 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,834 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,837 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:14:36,841 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T04:14:36,843 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:14:36,847 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:14:36,849 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:14:36,854 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T04:14:36,855 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:14:36,859 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:14:36,862 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T04:14:36,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T04:14:36,867 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:36,869 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:36,874 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:36,880 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:14:36,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:36,887 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:36,893 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:14:36,897 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:14:36,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T04:14:36,902 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:14:36,905 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:14:36,907 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:14:36,910 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:14:36,913 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:14:36,916 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T04:14:36,917 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:14:36,920 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:14:36,924 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:14:36,928 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T04:14:36,930 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,932 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,934 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,937 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,940 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,944 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,946 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,948 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,950 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,953 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T04:14:36,957 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:14:36,960 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:14:36,962 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:14:36,965 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,968 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,970 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,973 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T04:14:36,974 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:14:36,977 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:14:36,979 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:14:36,982 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,985 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:36,988 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T04:14:36,990 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:14:36,992 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:14:36,994 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:14:36,997 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:14:36,999 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:14:37,002 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,004 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,006 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,008 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,011 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T04:14:37,012 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,016 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,019 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,020 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,023 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,025 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,028 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,030 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:14:37,034 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,036 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:14:37,038 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T04:14:37,039 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:14:37,041 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:14:37,044 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:14:37,047 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T04:14:37,048 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,050 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,054 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,056 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,062 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,069 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,077 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:14:37,080 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T04:14:37,081 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,083 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,086 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,089 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,092 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,095 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,097 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,100 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,102 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,104 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:14:37,107 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T04:14:37,108 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,110 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,113 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,115 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,117 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,121 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,124 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,126 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,129 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,132 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,135 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,137 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,139 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,142 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,145 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T04:14:37,146 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:14:37,148 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:14:37,151 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:14:37,153 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,155 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,158 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,160 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,162 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,164 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,167 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,170 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,172 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:14:37,176 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T04:14:37,177 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,179 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,182 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,188 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,191 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,194 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,197 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,200 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,202 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,206 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,209 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,211 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,214 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,217 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,219 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,223 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,225 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,229 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,232 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,234 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:14:37,239 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T04:14:37,240 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:14:37,242 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:14:37,245 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:14:37,248 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T04:14:37,249 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,251 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,253 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,255 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,258 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,261 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,264 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,266 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,268 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:14:37,271 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:37,273 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T04:14:37,274 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:14:37,276 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:14:37,279 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:14:37,281 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:37,288 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T04:14:37,289 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:14:37,291 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:14:37,294 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T04:14:37,296 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,298 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,299 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,301 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,303 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,305 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,307 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,309 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:14:37,311 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:14:37,314 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:14:37,317 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:14:37,320 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T04:14:37,321 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,323 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,325 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,329 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,334 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T04:14:37,335 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T04:14:37,336 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T04:14:37,339 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,341 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,343 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,346 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,348 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,350 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T04:14:37,351 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:14:37,353 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:14:37,355 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:14:37,358 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:14:37,360 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:14:37,362 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T04:14:37,363 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:14:37,366 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:14:37,368 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:14:37,371 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T04:14:37,372 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:14:37,374 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:14:37,376 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:14:37,379 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:14:37,382 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T04:14:37,383 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T04:14:37,387 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T04:14:37,393 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T04:14:37,395 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,400 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,407 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,415 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,419 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,426 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,434 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,440 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,444 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:14:37,450 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:37,452 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:37,456 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:37,489 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:37,492 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:14:37,517 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T04:14:37,518 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,521 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,525 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,531 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,533 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,535 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:14:37,539 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T04:14:37,540 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:14:37,544 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:14:37,546 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:14:37,549 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,553 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T04:14:37,554 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T04:14:37,557 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T04:14:37,560 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,563 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:14:37,565 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,568 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T04:14:37,569 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T04:14:37,572 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T04:14:37,573 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T04:14:37,576 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T04:14:37,577 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T04:14:37,580 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,583 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,586 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,590 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,592 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,596 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T04:14:37,597 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,599 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,602 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,604 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,606 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,609 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,612 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,614 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,617 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:14:37,620 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,622 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,625 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:14:37,627 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T04:14:37,629 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:14:37,631 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:14:37,634 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:14:37,637 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:37,641 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T04:14:37,643 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T04:14:37,645 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T04:14:37,647 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:14:37,649 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:14:37,651 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:14:37,654 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T04:14:37,655 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:14:37,658 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:14:37,661 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:14:37,665 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T04:14:37,666 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:14:37,669 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:14:37,671 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:14:37,675 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:14:37,680 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T04:14:37,682 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T04:14:37,686 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T04:14:37,694 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T04:14:37,696 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T04:14:37,702 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T04:14:37,706 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T04:14:37,708 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:14:37,710 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:14:37,713 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:14:37,718 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,720 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,724 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,730 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,950 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,954 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:14:37,959 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T04:14:37,961 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T04:14:37,964 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T04:14:37,968 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,970 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,974 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,977 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,981 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,984 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,987 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:14:37,992 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:37,994 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:37,997 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:38,001 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:38,005 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:38,008 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:14:38,012 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T04:14:38,014 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,018 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,021 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,025 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,027 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,039 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,042 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,043 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,045 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,047 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,049 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,051 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,052 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,054 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:14:38,057 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,059 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:14:38,063 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T04:14:38,064 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T04:14:38,066 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:14:38,073 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T04:14:38,074 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,077 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,079 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,081 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,084 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,085 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,087 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,089 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,091 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,093 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,095 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,097 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:14:38,100 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,102 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,106 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,109 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,112 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,115 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,118 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,121 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:14:38,124 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:14:38,128 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T04:14:38,129 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,131 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,134 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,137 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,140 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T04:14:38,141 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,144 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,147 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,150 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,153 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,155 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,158 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,161 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,164 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,166 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,169 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,172 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,175 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:14:38,178 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,180 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,183 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,186 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,191 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,193 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,196 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,198 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,201 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,203 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,205 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,208 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,211 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T04:14:38,212 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,214 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,216 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,218 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,221 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,223 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,225 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,228 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,230 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,232 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:14:38,234 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,238 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,241 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,243 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,245 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,247 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,250 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T04:14:38,251 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,253 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,255 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,257 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,259 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,262 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,263 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:14:38,266 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,269 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,271 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T04:14:38,272 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,274 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,276 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,278 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,281 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,284 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,286 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,288 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,291 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,293 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,296 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,298 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,302 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,304 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,307 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:14:38,309 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,312 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,314 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,317 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,320 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,324 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,327 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,330 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,332 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,334 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:14:38,338 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T04:14:38,338 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,345 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,348 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,350 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,352 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,355 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,357 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,359 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,361 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,364 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,367 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,369 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,372 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,374 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,377 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,379 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,382 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,387 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,390 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,393 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,395 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,397 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,401 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,404 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T04:14:38,405 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,407 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,409 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,412 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T04:14:38,413 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:14:38,418 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:14:38,421 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:14:38,424 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:14:38,428 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,431 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,434 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:14:38,439 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,443 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,450 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,491 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,494 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,496 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,499 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,501 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,506 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,508 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,511 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,514 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,516 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,520 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,523 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,525 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,528 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,531 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,534 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,536 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,538 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,542 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:14:38,546 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T04:14:38,547 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,548 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,551 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,553 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T04:14:38,554 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:14:38,556 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:14:38,558 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:14:38,561 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:14:38,563 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:14:38,566 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,568 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,570 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,573 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,576 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,580 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,581 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,584 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,586 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,588 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:14:38,591 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T04:14:38,592 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,594 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,596 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,598 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,600 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,602 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,604 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,606 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,608 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,611 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:14:38,613 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T04:14:38,615 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T04:14:38,617 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T04:14:38,618 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:14:38,621 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:14:38,625 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T04:14:38,626 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:14:38,630 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:14:38,632 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:14:38,642 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:14:38,659 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:14:38,679 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:14:38,776 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:14:38,783 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:14:38,785 running install_egg_info 2026-03-27T04:14:38,793 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.9-py3.11.egg-info 2026-03-27T04:14:38,809 running install_scripts 2026-03-27T04:14:38,826 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.9.dist-info/WHEEL 2026-03-27T04:14:38,830 creating '/tmp/pip-wheel-lianafak/.tmp-oifdzttj/omicverse-2.0.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T04:14:38,835 adding 'omicverse/__init__.py' 2026-03-27T04:14:38,838 adding 'omicverse/_lazy_loader.py' 2026-03-27T04:14:38,841 adding 'omicverse/_monitor.py' 2026-03-27T04:14:38,850 adding 'omicverse/_registry.py' 2026-03-27T04:14:38,856 adding 'omicverse/_settings.py' 2026-03-27T04:14:38,859 adding 'omicverse/claw.py' 2026-03-27T04:14:38,861 adding 'omicverse/cli.py' 2026-03-27T04:14:38,864 adding 'omicverse/agent/__init__.py' 2026-03-27T04:14:38,867 adding 'omicverse/alignment/STAR.py' 2026-03-27T04:14:38,868 adding 'omicverse/alignment/__init__.py' 2026-03-27T04:14:38,870 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T04:14:38,873 adding 'omicverse/alignment/fastp.py' 2026-03-27T04:14:38,875 adding 'omicverse/alignment/featureCount.py' 2026-03-27T04:14:38,877 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T04:14:38,882 adding 'omicverse/alignment/kb_api.py' 2026-03-27T04:14:38,884 adding 'omicverse/alignment/pipeline.py' 2026-03-27T04:14:38,886 adding 'omicverse/alignment/prefetch.py' 2026-03-27T04:14:38,888 adding 'omicverse/biocontext/__init__.py' 2026-03-27T04:14:38,889 adding 'omicverse/biocontext/_client.py' 2026-03-27T04:14:38,892 adding 'omicverse/biocontext/_tools.py' 2026-03-27T04:14:38,897 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T04:14:38,901 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T04:14:38,905 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T04:14:38,907 adding 'omicverse/bulk/__init__.py' 2026-03-27T04:14:38,948 adding 'omicverse/bulk/_chm13.py' 2026-03-27T04:14:38,954 adding 'omicverse/bulk/_combat.py' 2026-03-27T04:14:38,956 adding 'omicverse/bulk/_decov.py' 2026-03-27T04:14:38,958 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T04:14:38,963 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T04:14:38,965 adding 'omicverse/bulk/_network.py' 2026-03-27T04:14:38,968 adding 'omicverse/bulk/_tcga.py' 2026-03-27T04:14:38,970 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T04:14:38,972 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T04:14:38,975 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T04:14:38,977 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T04:14:38,980 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T04:14:38,985 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T04:14:38,990 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T04:14:38,993 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T04:14:38,995 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T04:14:38,998 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T04:14:39,000 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T04:14:39,003 adding 'omicverse/data_files/README.md' 2026-03-27T04:14:39,045 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T04:14:39,048 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T04:14:39,568 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T04:14:39,601 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T04:14:39,604 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T04:14:39,607 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T04:14:39,631 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T04:14:39,673 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T04:14:39,714 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T04:14:39,720 adding 'omicverse/datasets/__init__.py' 2026-03-27T04:14:39,726 adding 'omicverse/datasets/_datasets.py' 2026-03-27T04:14:39,728 adding 'omicverse/datasets/_signatures.py' 2026-03-27T04:14:39,731 adding 'omicverse/external/__init__.py' 2026-03-27T04:14:39,734 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T04:14:39,735 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T04:14:39,737 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T04:14:39,740 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T04:14:39,742 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T04:14:39,745 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T04:14:39,750 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T04:14:39,752 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T04:14:39,754 adding 'omicverse/external/CAST/main.py' 2026-03-27T04:14:39,757 adding 'omicverse/external/CAST/utils.py' 2026-03-27T04:14:39,759 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T04:14:39,761 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T04:14:39,763 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T04:14:39,765 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T04:14:39,767 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T04:14:39,768 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T04:14:39,770 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T04:14:39,773 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T04:14:39,777 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T04:14:39,779 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T04:14:39,782 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T04:14:39,784 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T04:14:39,787 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T04:14:39,789 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T04:14:39,792 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T04:14:39,795 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T04:14:39,798 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T04:14:39,801 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T04:14:39,804 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T04:14:39,806 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T04:14:39,808 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T04:14:39,810 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T04:14:39,813 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T04:14:39,815 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T04:14:39,817 adding 'omicverse/external/GraphST/model.py' 2026-03-27T04:14:39,819 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T04:14:39,820 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T04:14:39,822 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T04:14:39,824 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T04:14:39,826 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T04:14:39,828 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T04:14:39,830 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T04:14:39,831 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T04:14:39,833 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T04:14:39,835 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T04:14:39,838 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T04:14:39,839 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T04:14:39,842 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T04:14:39,844 adding 'omicverse/external/PROST/layers.py' 2026-03-27T04:14:39,846 adding 'omicverse/external/PROST/model.py' 2026-03-27T04:14:39,848 adding 'omicverse/external/PROST/plot.py' 2026-03-27T04:14:39,852 adding 'omicverse/external/PROST/utils.py' 2026-03-27T04:14:39,854 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T04:14:39,857 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T04:14:39,859 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T04:14:39,861 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T04:14:39,885 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T04:14:39,889 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T04:14:39,891 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T04:14:39,893 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T04:14:39,897 adding 'omicverse/external/SEACells/core.py' 2026-03-27T04:14:39,903 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T04:14:39,908 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T04:14:39,910 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T04:14:39,912 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T04:14:39,914 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T04:14:39,918 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T04:14:39,920 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T04:14:39,921 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T04:14:39,923 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T04:14:39,925 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T04:14:39,926 adding 'omicverse/external/SEACells/version.py' 2026-03-27T04:14:39,929 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T04:14:39,931 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T04:14:39,932 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T04:14:39,934 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T04:14:39,936 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T04:14:39,939 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T04:14:39,942 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T04:14:39,944 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T04:14:39,947 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T04:14:39,950 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T04:14:39,953 adding 'omicverse/external/STT/__init__.py' 2026-03-27T04:14:39,956 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T04:14:39,960 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T04:14:39,963 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T04:14:39,966 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T04:14:39,968 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T04:14:39,970 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T04:14:39,973 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T04:14:39,975 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T04:14:39,977 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T04:14:39,979 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T04:14:39,981 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T04:14:39,982 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T04:14:39,985 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T04:14:39,987 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T04:14:39,989 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T04:14:39,990 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T04:14:40,012 adding 'omicverse/external/VIA/core.py' 2026-03-27T04:14:40,016 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T04:14:40,040 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T04:14:40,067 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T04:14:40,082 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T04:14:40,084 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T04:14:40,086 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T04:14:40,100 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T04:14:40,103 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T04:14:40,106 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T04:14:40,108 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T04:14:40,110 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T04:14:40,112 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T04:14:40,114 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T04:14:40,116 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T04:14:40,118 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T04:14:40,120 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T04:14:40,123 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T04:14:40,125 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-03-27T04:14:40,127 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-03-27T04:14:40,129 adding 'omicverse/external/bulk2single/pybayesprism/optim.py' 2026-03-27T04:14:40,132 adding 'omicverse/external/bulk2single/pybayesprism/prism.py' 2026-03-27T04:14:40,134 adding 'omicverse/external/bulk2single/pybayesprism/process_input.py' 2026-03-27T04:14:40,135 adding 'omicverse/external/bulk2single/pybayesprism/references.py' 2026-03-27T04:14:40,137 adding 'omicverse/external/bulk2single/pybayesprism/run.py' 2026-03-27T04:14:40,139 adding 'omicverse/external/bulk2single/pybayesprism/theta_post.py' 2026-03-27T04:14:40,839 adding 'omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt' 2026-03-27T04:14:40,892 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt' 2026-03-27T04:14:40,919 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt' 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