2026-03-27T04:54:51,140 Created temporary directory: /tmp/pip-ephem-wheel-cache-nufpfse2 2026-03-27T04:54:51,142 Created temporary directory: /tmp/pip-build-tracker-beq5k5gr 2026-03-27T04:54:51,142 Initialized build tracking at /tmp/pip-build-tracker-beq5k5gr 2026-03-27T04:54:51,142 Created build tracker: /tmp/pip-build-tracker-beq5k5gr 2026-03-27T04:54:51,143 Entered build tracker: /tmp/pip-build-tracker-beq5k5gr 2026-03-27T04:54:51,144 Created temporary directory: /tmp/pip-wheel-kq6m2sg3 2026-03-27T04:54:51,146 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T04:54:51,149 Created temporary directory: /tmp/pip-ephem-wheel-cache-9jkerjul 2026-03-27T04:54:51,173 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T04:54:51,176 2 location(s) to search for versions of sos-bioinfo: 2026-03-27T04:54:51,176 * https://pypi.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,176 * https://www.piwheels.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,177 Fetching project page and analyzing links: https://pypi.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,178 Getting page https://pypi.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,179 Found index url https://pypi.org/simple 2026-03-27T04:54:51,404 Fetched page https://pypi.org/simple/sos-bioinfo/ as application/vnd.pypi.simple.v1+json 2026-03-27T04:54:51,407 Found link https://files.pythonhosted.org/packages/3d/a2/2aeec5fce53ba16d24d8806f7df6904ce5c3c3354e2cda72582a2dd2c8eb/sos-bioinfo-0.9.9.2.tar.gz (from https://pypi.org/simple/sos-bioinfo/), version: 0.9.9.2 2026-03-27T04:54:51,408 Found link https://files.pythonhosted.org/packages/67/4b/1cebdd1148c93b3d46dfbca7642613350a58a647e0bdd0e9e549571ced45/sos-bioinfo-0.9.10.0.tar.gz (from https://pypi.org/simple/sos-bioinfo/), version: 0.9.10.0 2026-03-27T04:54:51,408 Found link https://files.pythonhosted.org/packages/54/8d/1697e7cfacc61c0dd4d652b4d4c58da3f2f42d0c302d1530b2eb937daeec/sos-bioinfo-0.9.10.1.tar.gz (from https://pypi.org/simple/sos-bioinfo/), version: 0.9.10.1 2026-03-27T04:54:51,409 Skipping link: No binaries permitted for sos-bioinfo: https://files.pythonhosted.org/packages/00/ed/d6dd52ec9179c762a6024a88048fdb8723656be00f48ea10b387b6219043/sos_bioinfo-0.9.10.1-py3-none-any.whl (from https://pypi.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,410 Found link https://files.pythonhosted.org/packages/73/4e/4cf4039b5176a27fb1e0c2748fe2c06da7a89a394e04a6a724fc708254c1/sos-bioinfo-0.17.4.tar.gz (from https://pypi.org/simple/sos-bioinfo/), version: 0.17.4 2026-03-27T04:54:51,410 Skipping link: No binaries permitted for sos-bioinfo: https://files.pythonhosted.org/packages/9b/43/a2cc92b1621950564fa83006c912636a71dc6a3750299336b59611a1bf01/sos_bioinfo-0.17.4-py3-none-any.whl (from https://pypi.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,411 Skipping link: No binaries permitted for sos-bioinfo: https://files.pythonhosted.org/packages/8e/79/89aa0316856adf6d9368f9a5b696f7da50a3e911f0485fcf7ad1e32fb0aa/sos_bioinfo-0.17.6-py3-none-any.whl (from https://pypi.org/simple/sos-bioinfo/) (requires-python:>=3.8) 2026-03-27T04:54:51,412 Found link https://files.pythonhosted.org/packages/45/b9/06181d9a4757167592ff3420283554d24c9a05253731c1029a23852fc066/sos_bioinfo-0.17.6.tar.gz (from https://pypi.org/simple/sos-bioinfo/) (requires-python:>=3.8), version: 0.17.6 2026-03-27T04:54:51,413 Fetching project page and analyzing links: https://www.piwheels.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,414 Getting page https://www.piwheels.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,415 Found index url https://www.piwheels.org/simple 2026-03-27T04:54:51,584 Fetched page https://www.piwheels.org/simple/sos-bioinfo/ as text/html 2026-03-27T04:54:51,587 Skipping link: No binaries permitted for sos-bioinfo: https://archive1.piwheels.org/simple/sos-bioinfo/sos_bioinfo-0.17.4-py3-none-any.whl#sha256=5fd3cfd9bef8d94273a17c25e9d3f960a6e9926319fba9890d4c19aeefb455d2 (from https://www.piwheels.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,587 Skipping link: No binaries permitted for sos-bioinfo: https://archive1.piwheels.org/simple/sos-bioinfo/sos_bioinfo-0.9.10.1-py3-none-any.whl#sha256=b95438678470c4b5559dfb2140bfa2e6a692397a50e5799d816f5c4a9d91ced8 (from https://www.piwheels.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,588 Skipping link: No binaries permitted for sos-bioinfo: https://archive1.piwheels.org/simple/sos-bioinfo/sos_bioinfo-0.9.10.0-py3-none-any.whl#sha256=8a331aaccf2d29e3fb65d296ea5ecdb1d2ac6d2d876a1aab8cfbeb23a7886bb0 (from https://www.piwheels.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,589 Skipping link: No binaries permitted for sos-bioinfo: https://archive1.piwheels.org/simple/sos-bioinfo/sos_bioinfo-0.9.9.2-py3-none-any.whl#sha256=7369b81e3df7a7e8a17b632964b0c86b0e7601404ee9a671d4e449675d6310f6 (from https://www.piwheels.org/simple/sos-bioinfo/) 2026-03-27T04:54:51,589 Skipping link: not a file: https://www.piwheels.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,590 Skipping link: not a file: https://pypi.org/simple/sos-bioinfo/ 2026-03-27T04:54:51,609 Given no hashes to check 1 links for project 'sos-bioinfo': discarding no candidates 2026-03-27T04:54:51,627 Collecting sos-bioinfo==0.17.6 2026-03-27T04:54:51,629 Created temporary directory: /tmp/pip-unpack-1tv01x7h 2026-03-27T04:54:51,778 Downloading sos_bioinfo-0.17.6.tar.gz (4.2 kB) 2026-03-27T04:54:51,813 Added sos-bioinfo==0.17.6 from https://files.pythonhosted.org/packages/45/b9/06181d9a4757167592ff3420283554d24c9a05253731c1029a23852fc066/sos_bioinfo-0.17.6.tar.gz to build tracker '/tmp/pip-build-tracker-beq5k5gr' 2026-03-27T04:54:51,818 Created temporary directory: /tmp/pip-build-env-vn_xfnt4 2026-03-27T04:54:51,823 Installing build dependencies: started 2026-03-27T04:54:51,824 Running command pip subprocess to install build dependencies 2026-03-27T04:54:52,941 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T04:54:53,346 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T04:54:53,369 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T04:54:55,146 Collecting setuptools>=61.0 2026-03-27T04:54:55,224 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T04:54:55,495 Collecting wheel 2026-03-27T04:54:55,511 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T04:54:55,696 Collecting packaging>=24.0 2026-03-27T04:54:55,714 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T04:54:58,648 Installing collected packages: setuptools, packaging, wheel 2026-03-27T04:55:02,016 Creating /tmp/pip-build-env-vn_xfnt4/overlay/local/bin 2026-03-27T04:55:02,018 changing mode of /tmp/pip-build-env-vn_xfnt4/overlay/local/bin/wheel to 755 2026-03-27T04:55:02,039 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T04:55:02,315 Installing build dependencies: finished with status 'done' 2026-03-27T04:55:02,322 Getting requirements to build wheel: started 2026-03-27T04:55:02,323 Running command Getting requirements to build wheel 2026-03-27T04:55:02,914 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:02,914 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:02,915 Entry point `*.bam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:02,916 Entry point `*.sam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:02,920 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:55:02,921 !! 2026-03-27T04:55:02,922 ******************************************************************************** 2026-03-27T04:55:02,922 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:55:02,923 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:55:02,924 or your builds will no longer be supported. 2026-03-27T04:55:02,924 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:02,925 ******************************************************************************** 2026-03-27T04:55:02,926 !! 2026-03-27T04:55:02,926 corresp(dist, value, root_dir) 2026-03-27T04:55:03,002 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:03,003 !! 2026-03-27T04:55:03,004 ******************************************************************************** 2026-03-27T04:55:03,004 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:03,005 License :: OSI Approved :: BSD License 2026-03-27T04:55:03,007 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:03,007 ******************************************************************************** 2026-03-27T04:55:03,008 !! 2026-03-27T04:55:03,009 dist._finalize_license_expression() 2026-03-27T04:55:03,010 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:03,010 !! 2026-03-27T04:55:03,012 ******************************************************************************** 2026-03-27T04:55:03,012 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:03,014 License :: OSI Approved :: BSD License 2026-03-27T04:55:03,015 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:03,016 ******************************************************************************** 2026-03-27T04:55:03,017 !! 2026-03-27T04:55:03,018 self._finalize_license_expression() 2026-03-27T04:55:03,018 running egg_info 2026-03-27T04:55:03,022 writing src/sos_bioinfo.egg-info/PKG-INFO 2026-03-27T04:55:03,026 writing dependency_links to src/sos_bioinfo.egg-info/dependency_links.txt 2026-03-27T04:55:03,028 writing entry points to src/sos_bioinfo.egg-info/entry_points.txt 2026-03-27T04:55:03,030 writing requirements to src/sos_bioinfo.egg-info/requires.txt 2026-03-27T04:55:03,031 writing top-level names to src/sos_bioinfo.egg-info/top_level.txt 2026-03-27T04:55:03,054 reading manifest file 'src/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:03,056 reading manifest template 'MANIFEST.in' 2026-03-27T04:55:03,058 warning: no files found matching 'setup.py' 2026-03-27T04:55:03,067 warning: no files found matching '*.js' under directory 'src' 2026-03-27T04:55:03,072 warning: no files found matching '*.tpl' under directory 'src' 2026-03-27T04:55:03,077 warning: no files found matching '*.m' under directory 'src' 2026-03-27T04:55:03,077 warning: no files found matching '*.vim' under directory 'misc' 2026-03-27T04:55:03,078 warning: no files found matching '*.py' under directory 'misc' 2026-03-27T04:55:03,079 warning: no files found matching '*.js' under directory 'misc' 2026-03-27T04:55:03,079 warning: no files found matching '*.png' under directory 'misc' 2026-03-27T04:55:03,080 warning: no files found matching '*.vim' under directory 'test' 2026-03-27T04:55:03,082 warning: no files found matching '*.js' under directory 'test' 2026-03-27T04:55:03,082 warning: no files found matching '*.ipynb' under directory 'docs/src' 2026-03-27T04:55:03,083 warning: no files found matching '*.png' under directory 'docs/src' 2026-03-27T04:55:03,083 warning: no files found matching '*.jpg' under directory 'docs/src' 2026-03-27T04:55:03,084 warning: no files found matching '*.sos' under directory 'docs/src' 2026-03-27T04:55:03,084 no previously-included directories found matching '*/.sos' 2026-03-27T04:55:03,085 warning: no previously-included files matching '*~' found anywhere in distribution 2026-03-27T04:55:03,085 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-03-27T04:55:03,086 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-03-27T04:55:03,086 warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution 2026-03-27T04:55:03,087 adding license file 'LICENSE' 2026-03-27T04:55:03,089 writing manifest file 'src/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:03,185 Getting requirements to build wheel: finished with status 'done' 2026-03-27T04:55:03,189 Created temporary directory: /tmp/pip-modern-metadata-4vwugv0y 2026-03-27T04:55:03,191 Preparing metadata (pyproject.toml): started 2026-03-27T04:55:03,192 Running command Preparing metadata (pyproject.toml) 2026-03-27T04:55:03,743 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:03,743 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:03,744 Entry point `*.bam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:03,745 Entry point `*.sam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:03,749 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:55:03,749 !! 2026-03-27T04:55:03,751 ******************************************************************************** 2026-03-27T04:55:03,751 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:55:03,752 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:55:03,753 or your builds will no longer be supported. 2026-03-27T04:55:03,754 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:03,754 ******************************************************************************** 2026-03-27T04:55:03,755 !! 2026-03-27T04:55:03,756 corresp(dist, value, root_dir) 2026-03-27T04:55:03,823 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:03,824 !! 2026-03-27T04:55:03,825 ******************************************************************************** 2026-03-27T04:55:03,825 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:03,826 License :: OSI Approved :: BSD License 2026-03-27T04:55:03,828 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:03,828 ******************************************************************************** 2026-03-27T04:55:03,830 !! 2026-03-27T04:55:03,830 dist._finalize_license_expression() 2026-03-27T04:55:03,830 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:03,831 !! 2026-03-27T04:55:03,832 ******************************************************************************** 2026-03-27T04:55:03,832 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:03,833 License :: OSI Approved :: BSD License 2026-03-27T04:55:03,834 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:03,834 ******************************************************************************** 2026-03-27T04:55:03,835 !! 2026-03-27T04:55:03,836 self._finalize_license_expression() 2026-03-27T04:55:03,836 running dist_info 2026-03-27T04:55:03,847 creating /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info 2026-03-27T04:55:03,847 writing /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/PKG-INFO 2026-03-27T04:55:03,852 writing dependency_links to /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/dependency_links.txt 2026-03-27T04:55:03,853 writing entry points to /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/entry_points.txt 2026-03-27T04:55:03,855 writing requirements to /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/requires.txt 2026-03-27T04:55:03,856 writing top-level names to /tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/top_level.txt 2026-03-27T04:55:03,857 writing manifest file '/tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:03,877 reading manifest file '/tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:03,879 reading manifest template 'MANIFEST.in' 2026-03-27T04:55:03,880 warning: no files found matching 'setup.py' 2026-03-27T04:55:03,888 warning: no files found matching '*.js' under directory 'src' 2026-03-27T04:55:03,893 warning: no files found matching '*.tpl' under directory 'src' 2026-03-27T04:55:03,898 warning: no files found matching '*.m' under directory 'src' 2026-03-27T04:55:03,898 warning: no files found matching '*.vim' under directory 'misc' 2026-03-27T04:55:03,899 warning: no files found matching '*.py' under directory 'misc' 2026-03-27T04:55:03,900 warning: no files found matching '*.js' under directory 'misc' 2026-03-27T04:55:03,900 warning: no files found matching '*.png' under directory 'misc' 2026-03-27T04:55:03,901 warning: no files found matching '*.vim' under directory 'test' 2026-03-27T04:55:03,903 warning: no files found matching '*.js' under directory 'test' 2026-03-27T04:55:03,903 warning: no files found matching '*.ipynb' under directory 'docs/src' 2026-03-27T04:55:03,904 warning: no files found matching '*.png' under directory 'docs/src' 2026-03-27T04:55:03,904 warning: no files found matching '*.jpg' under directory 'docs/src' 2026-03-27T04:55:03,905 warning: no files found matching '*.sos' under directory 'docs/src' 2026-03-27T04:55:03,906 no previously-included directories found matching '*/.sos' 2026-03-27T04:55:03,906 warning: no previously-included files matching '*~' found anywhere in distribution 2026-03-27T04:55:03,907 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-03-27T04:55:03,907 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-03-27T04:55:03,908 warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution 2026-03-27T04:55:03,909 adding license file 'LICENSE' 2026-03-27T04:55:03,912 writing manifest file '/tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:03,912 creating '/tmp/pip-modern-metadata-4vwugv0y/sos_bioinfo-0.17.6.dist-info' 2026-03-27T04:55:04,035 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T04:55:04,040 Source in /tmp/pip-wheel-kq6m2sg3/sos-bioinfo_01d1c67c647c44f8b7891f458b9b5c33 has version 0.17.6, which satisfies requirement sos-bioinfo==0.17.6 from https://files.pythonhosted.org/packages/45/b9/06181d9a4757167592ff3420283554d24c9a05253731c1029a23852fc066/sos_bioinfo-0.17.6.tar.gz 2026-03-27T04:55:04,041 Removed sos-bioinfo==0.17.6 from https://files.pythonhosted.org/packages/45/b9/06181d9a4757167592ff3420283554d24c9a05253731c1029a23852fc066/sos_bioinfo-0.17.6.tar.gz from build tracker '/tmp/pip-build-tracker-beq5k5gr' 2026-03-27T04:55:04,046 Created temporary directory: /tmp/pip-unpack-sbhjg0c2 2026-03-27T04:55:04,046 Building wheels for collected packages: sos-bioinfo 2026-03-27T04:55:04,051 Created temporary directory: /tmp/pip-wheel-49l9jq3j 2026-03-27T04:55:04,051 Destination directory: /tmp/pip-wheel-49l9jq3j 2026-03-27T04:55:04,053 Building wheel for sos-bioinfo (pyproject.toml): started 2026-03-27T04:55:04,054 Running command Building wheel for sos-bioinfo (pyproject.toml) 2026-03-27T04:55:04,634 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:04,634 `sos_bioinfo.preview:preview_bam [sam]` - using extras for entry points is not recommended 2026-03-27T04:55:04,635 Entry point `*.bam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:04,635 Entry point `*.sam,1` does not follow recommended pattern: [\w.-]+ 2026-03-27T04:55:04,640 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:55:04,640 !! 2026-03-27T04:55:04,642 ******************************************************************************** 2026-03-27T04:55:04,642 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:55:04,643 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:55:04,644 or your builds will no longer be supported. 2026-03-27T04:55:04,645 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:04,646 ******************************************************************************** 2026-03-27T04:55:04,647 !! 2026-03-27T04:55:04,648 corresp(dist, value, root_dir) 2026-03-27T04:55:04,709 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:04,709 !! 2026-03-27T04:55:04,710 ******************************************************************************** 2026-03-27T04:55:04,711 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:04,712 License :: OSI Approved :: BSD License 2026-03-27T04:55:04,713 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:04,714 ******************************************************************************** 2026-03-27T04:55:04,715 !! 2026-03-27T04:55:04,715 dist._finalize_license_expression() 2026-03-27T04:55:04,716 /tmp/pip-build-env-vn_xfnt4/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-03-27T04:55:04,717 !! 2026-03-27T04:55:04,718 ******************************************************************************** 2026-03-27T04:55:04,718 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-03-27T04:55:04,719 License :: OSI Approved :: BSD License 2026-03-27T04:55:04,721 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:55:04,721 ******************************************************************************** 2026-03-27T04:55:04,722 !! 2026-03-27T04:55:04,723 self._finalize_license_expression() 2026-03-27T04:55:04,723 running bdist_wheel 2026-03-27T04:55:04,735 running build 2026-03-27T04:55:04,735 running build_py 2026-03-27T04:55:04,741 creating build/lib/sos_bioinfo 2026-03-27T04:55:04,744 copying src/sos_bioinfo/preview.py -> build/lib/sos_bioinfo 2026-03-27T04:55:04,746 copying src/sos_bioinfo/__init__.py -> build/lib/sos_bioinfo 2026-03-27T04:55:04,747 copying src/sos_bioinfo/_version.py -> build/lib/sos_bioinfo 2026-03-27T04:55:04,749 running egg_info 2026-03-27T04:55:04,758 writing src/sos_bioinfo.egg-info/PKG-INFO 2026-03-27T04:55:04,761 writing dependency_links to src/sos_bioinfo.egg-info/dependency_links.txt 2026-03-27T04:55:04,763 writing entry points to src/sos_bioinfo.egg-info/entry_points.txt 2026-03-27T04:55:04,764 writing requirements to src/sos_bioinfo.egg-info/requires.txt 2026-03-27T04:55:04,765 writing top-level names to src/sos_bioinfo.egg-info/top_level.txt 2026-03-27T04:55:04,776 reading manifest file 'src/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:04,779 reading manifest template 'MANIFEST.in' 2026-03-27T04:55:04,780 warning: no files found matching 'setup.py' 2026-03-27T04:55:04,788 warning: no files found matching '*.js' under directory 'src' 2026-03-27T04:55:04,793 warning: no files found matching '*.tpl' under directory 'src' 2026-03-27T04:55:04,797 warning: no files found matching '*.m' under directory 'src' 2026-03-27T04:55:04,798 warning: no files found matching '*.vim' under directory 'misc' 2026-03-27T04:55:04,798 warning: no files found matching '*.py' under directory 'misc' 2026-03-27T04:55:04,799 warning: no files found matching '*.js' under directory 'misc' 2026-03-27T04:55:04,799 warning: no files found matching '*.png' under directory 'misc' 2026-03-27T04:55:04,800 warning: no files found matching '*.vim' under directory 'test' 2026-03-27T04:55:04,802 warning: no files found matching '*.js' under directory 'test' 2026-03-27T04:55:04,802 warning: no files found matching '*.ipynb' under directory 'docs/src' 2026-03-27T04:55:04,803 warning: no files found matching '*.png' under directory 'docs/src' 2026-03-27T04:55:04,803 warning: no files found matching '*.jpg' under directory 'docs/src' 2026-03-27T04:55:04,804 warning: no files found matching '*.sos' under directory 'docs/src' 2026-03-27T04:55:04,805 no previously-included directories found matching '*/.sos' 2026-03-27T04:55:04,805 warning: no previously-included files matching '*~' found anywhere in distribution 2026-03-27T04:55:04,806 warning: no previously-included files matching '*.pyc' found anywhere in distribution 2026-03-27T04:55:04,806 warning: no previously-included files matching '*.pyo' found anywhere in distribution 2026-03-27T04:55:04,807 warning: no previously-included files matching '.ipynb_checkpoints' found anywhere in distribution 2026-03-27T04:55:04,808 adding license file 'LICENSE' 2026-03-27T04:55:04,810 writing manifest file 'src/sos_bioinfo.egg-info/SOURCES.txt' 2026-03-27T04:55:04,822 installing to build/bdist.linux-armv7l/wheel 2026-03-27T04:55:04,823 running install 2026-03-27T04:55:04,845 running install_lib 2026-03-27T04:55:04,851 creating build/bdist.linux-armv7l/wheel 2026-03-27T04:55:04,853 creating build/bdist.linux-armv7l/wheel/sos_bioinfo 2026-03-27T04:55:04,854 copying build/lib/sos_bioinfo/preview.py -> build/bdist.linux-armv7l/wheel/./sos_bioinfo 2026-03-27T04:55:04,856 copying build/lib/sos_bioinfo/__init__.py -> build/bdist.linux-armv7l/wheel/./sos_bioinfo 2026-03-27T04:55:04,858 copying build/lib/sos_bioinfo/_version.py -> build/bdist.linux-armv7l/wheel/./sos_bioinfo 2026-03-27T04:55:04,860 running install_egg_info 2026-03-27T04:55:04,865 Copying src/sos_bioinfo.egg-info to build/bdist.linux-armv7l/wheel/./sos_bioinfo-0.17.6-py3.11.egg-info 2026-03-27T04:55:04,878 running install_scripts 2026-03-27T04:55:04,889 creating build/bdist.linux-armv7l/wheel/sos_bioinfo-0.17.6.dist-info/WHEEL 2026-03-27T04:55:04,891 creating '/tmp/pip-wheel-49l9jq3j/.tmp-as__grto/sos_bioinfo-0.17.6-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T04:55:04,894 adding 'sos_bioinfo/__init__.py' 2026-03-27T04:55:04,895 adding 'sos_bioinfo/_version.py' 2026-03-27T04:55:04,896 adding 'sos_bioinfo/preview.py' 2026-03-27T04:55:04,899 adding 'sos_bioinfo-0.17.6.dist-info/licenses/LICENSE' 2026-03-27T04:55:04,900 adding 'sos_bioinfo-0.17.6.dist-info/METADATA' 2026-03-27T04:55:04,901 adding 'sos_bioinfo-0.17.6.dist-info/WHEEL' 2026-03-27T04:55:04,902 adding 'sos_bioinfo-0.17.6.dist-info/entry_points.txt' 2026-03-27T04:55:04,903 adding 'sos_bioinfo-0.17.6.dist-info/top_level.txt' 2026-03-27T04:55:04,904 adding 'sos_bioinfo-0.17.6.dist-info/RECORD' 2026-03-27T04:55:04,905 removing build/bdist.linux-armv7l/wheel 2026-03-27T04:55:05,005 Building wheel for sos-bioinfo (pyproject.toml): finished with status 'done' 2026-03-27T04:55:05,010 Created wheel for sos-bioinfo: filename=sos_bioinfo-0.17.6-py3-none-any.whl size=4179 sha256=c0ff8fb46365416a211f525a65fbf7b34ae7ab9c2fa4a77341f358cd51b16078 2026-03-27T04:55:05,011 Stored in directory: /tmp/pip-ephem-wheel-cache-9jkerjul/wheels/99/e7/c4/7e657d19910fe8eccf13ba44cedd17fb50de7561c5fd1d45cd 2026-03-27T04:55:05,020 Successfully built sos-bioinfo 2026-03-27T04:55:05,023 Removed build tracker: '/tmp/pip-build-tracker-beq5k5gr'