2026-03-27T04:56:50,377 Created temporary directory: /tmp/pip-ephem-wheel-cache-ej8od5hc 2026-03-27T04:56:50,380 Created temporary directory: /tmp/pip-build-tracker-b3xicb1m 2026-03-27T04:56:50,380 Initialized build tracking at /tmp/pip-build-tracker-b3xicb1m 2026-03-27T04:56:50,381 Created build tracker: /tmp/pip-build-tracker-b3xicb1m 2026-03-27T04:56:50,381 Entered build tracker: /tmp/pip-build-tracker-b3xicb1m 2026-03-27T04:56:50,382 Created temporary directory: /tmp/pip-wheel-cfcct__t 2026-03-27T04:56:50,384 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T04:56:50,387 Created temporary directory: /tmp/pip-ephem-wheel-cache-7sph86tz 2026-03-27T04:56:50,409 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T04:56:50,413 2 location(s) to search for versions of omicverse: 2026-03-27T04:56:50,413 * https://pypi.org/simple/omicverse/ 2026-03-27T04:56:50,413 * https://www.piwheels.org/simple/omicverse/ 2026-03-27T04:56:50,413 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-27T04:56:50,414 Getting page https://pypi.org/simple/omicverse/ 2026-03-27T04:56:50,416 Found index url https://pypi.org/simple 2026-03-27T04:56:50,564 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-27T04:56:50,588 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.2-py3-none-any.whl#sha256=46204165e625355c881fae9a0289295de89da868f61777f89430b974c5e49502 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,897 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,897 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,898 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,898 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,899 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,899 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,900 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,900 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,901 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,902 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,902 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,902 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,903 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,903 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,904 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,904 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,905 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,905 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,906 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T04:56:50,906 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T04:56:50,907 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T04:56:50,934 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T04:56:50,952 Collecting omicverse==2.0.10rc1 2026-03-27T04:56:50,955 Created temporary directory: /tmp/pip-unpack-1877g3i5 2026-03-27T04:56:51,089 Downloading omicverse-2.0.10rc1.tar.gz (11.9 MB) 2026-03-27T04:56:56,964 Added omicverse==2.0.10rc1 from https://files.pythonhosted.org/packages/aa/d7/22b5e11c5e13612e94de197af56d206f274e1e46f2abfaba0ec9da911e86/omicverse-2.0.10rc1.tar.gz to build tracker '/tmp/pip-build-tracker-b3xicb1m' 2026-03-27T04:56:56,972 Created temporary directory: /tmp/pip-build-env-56l2553w 2026-03-27T04:56:56,976 Installing build dependencies: started 2026-03-27T04:56:56,977 Running command pip subprocess to install build dependencies 2026-03-27T04:56:58,161 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T04:56:58,946 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T04:56:58,981 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T04:57:00,765 Collecting setuptools>=61 2026-03-27T04:57:00,856 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T04:57:01,133 Collecting wheel 2026-03-27T04:57:01,147 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T04:57:03,188 Collecting Cython 2026-03-27T04:57:04,049 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T04:57:04,509 Collecting packaging>=24.0 2026-03-27T04:57:04,524 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T04:57:07,547 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T04:57:14,957 Creating /tmp/pip-build-env-56l2553w/overlay/local/bin 2026-03-27T04:57:14,959 changing mode of /tmp/pip-build-env-56l2553w/overlay/local/bin/cygdb to 755 2026-03-27T04:57:14,962 changing mode of /tmp/pip-build-env-56l2553w/overlay/local/bin/cython to 755 2026-03-27T04:57:14,964 changing mode of /tmp/pip-build-env-56l2553w/overlay/local/bin/cythonize to 755 2026-03-27T04:57:15,094 changing mode of /tmp/pip-build-env-56l2553w/overlay/local/bin/wheel to 755 2026-03-27T04:57:15,120 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T04:57:15,496 Installing build dependencies: finished with status 'done' 2026-03-27T04:57:15,503 Getting requirements to build wheel: started 2026-03-27T04:57:15,504 Running command Getting requirements to build wheel 2026-03-27T04:57:16,280 /tmp/pip-build-env-56l2553w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:57:16,280 !! 2026-03-27T04:57:16,281 ******************************************************************************** 2026-03-27T04:57:16,282 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:57:16,283 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:57:16,284 or your builds will no longer be supported. 2026-03-27T04:57:16,285 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:57:16,285 ******************************************************************************** 2026-03-27T04:57:16,286 !! 2026-03-27T04:57:16,287 corresp(dist, value, root_dir) 2026-03-27T04:57:16,566 running egg_info 2026-03-27T04:57:16,572 writing omicverse.egg-info/PKG-INFO 2026-03-27T04:57:16,590 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T04:57:16,593 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T04:57:16,602 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T04:57:16,603 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T04:57:16,849 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:16,914 reading manifest template 'MANIFEST.in' 2026-03-27T04:57:17,878 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:57:19,447 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:57:19,903 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:57:25,416 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:57:25,890 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:57:26,414 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:57:26,897 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:57:27,427 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:57:27,867 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:57:28,320 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:57:28,322 no previously-included directories found matching '.git' 2026-03-27T04:57:28,325 no previously-included directories found matching '.github' 2026-03-27T04:57:28,328 no previously-included directories found matching '.claude' 2026-03-27T04:57:28,331 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:57:28,334 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:57:28,337 no previously-included directories found matching '.vscode' 2026-03-27T04:57:28,340 no previously-included directories found matching 'docs' 2026-03-27T04:57:28,342 no previously-included directories found matching 'tests' 2026-03-27T04:57:28,345 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:57:28,348 no previously-included directories found matching 'READMEM' 2026-03-27T04:57:28,351 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:57:28,354 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:57:28,357 no previously-included directories found matching 'tmp' 2026-03-27T04:57:28,360 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:57:28,363 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:57:28,369 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:57:28,377 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:57:28,383 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:57:28,383 adding license file 'LICENSE' 2026-03-27T04:57:28,458 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:28,573 Getting requirements to build wheel: finished with status 'done' 2026-03-27T04:57:28,577 Created temporary directory: /tmp/pip-modern-metadata-ct24p3z6 2026-03-27T04:57:28,579 Preparing metadata (pyproject.toml): started 2026-03-27T04:57:28,581 Running command Preparing metadata (pyproject.toml) 2026-03-27T04:57:29,217 /tmp/pip-build-env-56l2553w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:57:29,218 !! 2026-03-27T04:57:29,219 ******************************************************************************** 2026-03-27T04:57:29,219 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:57:29,221 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:57:29,221 or your builds will no longer be supported. 2026-03-27T04:57:29,222 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:57:29,222 ******************************************************************************** 2026-03-27T04:57:29,223 !! 2026-03-27T04:57:29,224 corresp(dist, value, root_dir) 2026-03-27T04:57:29,501 running dist_info 2026-03-27T04:57:29,513 creating /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info 2026-03-27T04:57:29,513 writing /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/PKG-INFO 2026-03-27T04:57:29,531 writing dependency_links to /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/dependency_links.txt 2026-03-27T04:57:29,533 writing entry points to /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/entry_points.txt 2026-03-27T04:57:29,542 writing requirements to /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/requires.txt 2026-03-27T04:57:29,543 writing top-level names to /tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/top_level.txt 2026-03-27T04:57:29,545 writing manifest file '/tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:29,818 reading manifest file '/tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:29,820 reading manifest template 'MANIFEST.in' 2026-03-27T04:57:30,866 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:57:32,314 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:57:32,829 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:57:37,163 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:57:37,618 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:57:38,087 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:57:38,555 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:57:39,008 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:57:39,549 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:57:40,146 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:57:40,150 no previously-included directories found matching '.git' 2026-03-27T04:57:40,153 no previously-included directories found matching '.github' 2026-03-27T04:57:40,157 no previously-included directories found matching '.claude' 2026-03-27T04:57:40,161 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:57:40,164 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:57:40,168 no previously-included directories found matching '.vscode' 2026-03-27T04:57:40,171 no previously-included directories found matching 'docs' 2026-03-27T04:57:40,175 no previously-included directories found matching 'tests' 2026-03-27T04:57:40,179 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:57:40,183 no previously-included directories found matching 'READMEM' 2026-03-27T04:57:40,186 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:57:40,190 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:57:40,194 no previously-included directories found matching 'tmp' 2026-03-27T04:57:40,197 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:57:40,201 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:57:40,208 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:57:40,214 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:57:40,219 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:57:40,219 adding license file 'LICENSE' 2026-03-27T04:57:40,275 writing manifest file '/tmp/pip-modern-metadata-ct24p3z6/omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:40,278 creating '/tmp/pip-modern-metadata-ct24p3z6/omicverse-2.0.10rc1.dist-info' 2026-03-27T04:57:40,424 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T04:57:40,438 Source in /tmp/pip-wheel-cfcct__t/omicverse_6913afdbf8c94c4ba362fafde08ac194 has version 2.0.10rc1, which satisfies requirement omicverse==2.0.10rc1 from https://files.pythonhosted.org/packages/aa/d7/22b5e11c5e13612e94de197af56d206f274e1e46f2abfaba0ec9da911e86/omicverse-2.0.10rc1.tar.gz 2026-03-27T04:57:40,439 Removed omicverse==2.0.10rc1 from https://files.pythonhosted.org/packages/aa/d7/22b5e11c5e13612e94de197af56d206f274e1e46f2abfaba0ec9da911e86/omicverse-2.0.10rc1.tar.gz from build tracker '/tmp/pip-build-tracker-b3xicb1m' 2026-03-27T04:57:40,463 Created temporary directory: /tmp/pip-unpack-hq_1mkjk 2026-03-27T04:57:40,464 Building wheels for collected packages: omicverse 2026-03-27T04:57:40,468 Created temporary directory: /tmp/pip-wheel-40mnooi4 2026-03-27T04:57:40,469 Destination directory: /tmp/pip-wheel-40mnooi4 2026-03-27T04:57:40,471 Building wheel for omicverse (pyproject.toml): started 2026-03-27T04:57:40,472 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T04:57:41,264 /tmp/pip-build-env-56l2553w/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T04:57:41,264 !! 2026-03-27T04:57:41,266 ******************************************************************************** 2026-03-27T04:57:41,266 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T04:57:41,268 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T04:57:41,268 or your builds will no longer be supported. 2026-03-27T04:57:41,269 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T04:57:41,270 ******************************************************************************** 2026-03-27T04:57:41,271 !! 2026-03-27T04:57:41,271 corresp(dist, value, root_dir) 2026-03-27T04:57:41,540 running bdist_wheel 2026-03-27T04:57:41,560 running build 2026-03-27T04:57:41,560 running build_py 2026-03-27T04:57:41,567 creating build/lib/omicverse 2026-03-27T04:57:41,569 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T04:57:41,572 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T04:57:41,575 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T04:57:41,578 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T04:57:41,581 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T04:57:41,584 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T04:57:41,588 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T04:57:41,592 creating build/lib/omicverse/single 2026-03-27T04:57:41,593 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T04:57:41,596 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T04:57:41,600 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T04:57:41,603 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T04:57:41,607 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T04:57:41,610 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T04:57:41,613 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T04:57:41,615 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T04:57:41,618 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T04:57:41,622 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T04:57:41,625 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T04:57:41,627 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T04:57:41,629 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T04:57:41,635 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T04:57:41,638 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T04:57:41,640 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T04:57:41,643 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T04:57:41,646 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T04:57:41,650 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T04:57:41,652 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T04:57:41,655 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T04:57:41,657 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T04:57:41,661 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T04:57:41,664 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T04:57:41,668 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T04:57:41,671 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T04:57:41,673 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T04:57:41,675 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T04:57:41,678 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T04:57:41,681 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T04:57:41,684 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T04:57:41,687 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T04:57:41,690 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T04:57:41,693 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T04:57:41,695 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T04:57:41,699 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T04:57:41,702 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T04:57:41,704 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T04:57:41,707 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T04:57:41,710 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T04:57:41,713 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T04:57:41,715 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T04:57:41,717 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T04:57:41,720 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T04:57:41,729 creating build/lib/omicverse/bulk 2026-03-27T04:57:41,730 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,733 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,735 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,738 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,741 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,744 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,748 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,750 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,752 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,754 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,756 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T04:57:41,783 creating build/lib/omicverse/utils 2026-03-27T04:57:41,784 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,786 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,789 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,791 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,793 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,796 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,798 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,801 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,803 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,806 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,809 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,811 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,814 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,817 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,819 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,823 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,827 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,871 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,874 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,877 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,881 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,884 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,888 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,890 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,893 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,895 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,897 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,900 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,903 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,905 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,908 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,910 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,912 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,914 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,920 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T04:57:41,923 creating build/lib/omicverse/bulk2single 2026-03-27T04:57:41,924 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,927 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,930 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,932 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,935 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,938 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,941 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,943 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,946 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,948 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T04:57:41,952 creating build/lib/omicverse/biocontext 2026-03-27T04:57:41,953 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T04:57:41,956 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T04:57:41,958 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T04:57:41,960 creating build/lib/omicverse/mcp 2026-03-27T04:57:41,961 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,964 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,966 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,969 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,972 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,978 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,980 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,982 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,984 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,986 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,989 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,991 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,993 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T04:57:41,997 creating build/lib/omicverse/fm 2026-03-27T04:57:41,998 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T04:57:42,002 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T04:57:42,004 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T04:57:42,008 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T04:57:42,010 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T04:57:42,013 creating build/lib/omicverse/pl 2026-03-27T04:57:42,014 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,020 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,023 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,071 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,073 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,076 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,081 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,084 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,087 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,092 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,096 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,098 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,102 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,105 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,117 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,120 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,123 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,127 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,130 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,135 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T04:57:42,138 creating build/lib/omicverse/space 2026-03-27T04:57:42,139 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T04:57:42,142 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T04:57:42,144 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T04:57:42,148 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T04:57:42,193 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T04:57:42,198 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T04:57:42,203 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T04:57:42,206 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T04:57:42,211 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T04:57:42,214 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T04:57:42,217 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T04:57:42,219 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T04:57:42,222 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T04:57:42,225 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T04:57:42,230 creating build/lib/omicverse/pp 2026-03-27T04:57:42,231 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,235 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,238 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,242 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,244 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,250 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,255 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,259 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,266 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,270 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,273 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,275 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,278 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,282 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,285 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,287 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,290 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,293 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,295 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,298 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,300 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,302 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,306 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T04:57:42,309 creating build/lib/omicverse/alignment 2026-03-27T04:57:42,310 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,312 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,315 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,317 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,319 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,322 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,325 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,327 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,329 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T04:57:42,332 creating build/lib/omicverse/popv 2026-03-27T04:57:42,334 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,336 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,340 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,343 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,346 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,348 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T04:57:42,352 creating build/lib/omicverse/jarvis 2026-03-27T04:57:42,353 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,359 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,362 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,365 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,368 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,370 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,373 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,376 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,378 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,381 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,383 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,386 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,389 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T04:57:42,392 creating build/lib/omicverse/external 2026-03-27T04:57:42,394 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T04:57:42,397 creating build/lib/omicverse/llm 2026-03-27T04:57:42,399 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,407 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,410 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,414 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,418 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,421 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,423 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,426 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,430 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,435 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,437 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,441 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T04:57:42,444 creating build/lib/omicverse/data_files 2026-03-27T04:57:42,445 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T04:57:42,447 creating build/lib/omicverse/io 2026-03-27T04:57:42,449 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T04:57:42,451 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,452 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,454 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,456 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,458 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,461 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,463 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,466 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,468 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,470 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:42,472 creating build/lib/omicverse/agent 2026-03-27T04:57:42,473 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T04:57:42,476 creating build/lib/omicverse/datasets 2026-03-27T04:57:42,477 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T04:57:42,479 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T04:57:42,482 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T04:57:42,484 creating build/lib/omicverse/single/templates 2026-03-27T04:57:42,486 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T04:57:42,488 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T04:57:42,491 creating build/lib/omicverse/bulk/_alignment 2026-03-27T04:57:42,492 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T04:57:42,495 creating build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,496 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,499 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,502 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,505 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,508 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,511 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,514 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,516 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,518 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,521 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,524 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,526 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,530 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,533 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,536 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,538 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,542 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,545 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,547 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,550 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,552 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,554 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-03-27T04:57:42,557 creating build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,558 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,560 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,563 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,566 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,568 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,571 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,573 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,576 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,579 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:42,582 creating build/lib/omicverse/utils/harness 2026-03-27T04:57:42,583 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,585 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,587 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,590 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,592 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,595 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,597 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T04:57:42,600 creating build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,601 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,604 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,607 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,609 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,612 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,615 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,618 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,621 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,623 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,626 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,629 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,631 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,634 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T04:57:42,637 creating build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,637 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,640 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,642 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,645 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,647 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T04:57:42,649 creating build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,650 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,652 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,654 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,655 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,658 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,660 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,662 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,664 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T04:57:42,667 creating build/lib/omicverse/pp/experimental 2026-03-27T04:57:42,668 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:57:42,670 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:57:42,672 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T04:57:42,675 creating build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,676 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,678 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,680 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,682 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,684 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,686 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,688 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,690 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,693 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,695 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,698 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,700 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T04:57:42,702 creating build/lib/omicverse/popv/hub 2026-03-27T04:57:42,703 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T04:57:42,705 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T04:57:42,707 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T04:57:42,710 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T04:57:42,712 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T04:57:42,714 creating build/lib/omicverse/jarvis/gateway 2026-03-27T04:57:42,715 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:57:42,717 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:57:42,720 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T04:57:42,722 creating build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,723 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,726 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,730 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,733 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,736 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,739 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,741 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T04:57:42,746 creating build/lib/omicverse/jarvis/memory 2026-03-27T04:57:42,747 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T04:57:42,750 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T04:57:42,752 creating build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,753 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,755 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,757 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,759 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,761 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,763 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,765 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T04:57:42,768 creating build/lib/omicverse/external/cellanova 2026-03-27T04:57:42,769 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:57:42,771 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:57:42,773 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T04:57:42,776 creating build/lib/omicverse/external/palantir 2026-03-27T04:57:42,777 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,779 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,781 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,784 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,786 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,788 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,791 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,794 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,796 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,798 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,802 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T04:57:42,805 creating build/lib/omicverse/external/harmony 2026-03-27T04:57:42,806 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T04:57:42,809 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T04:57:42,811 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T04:57:42,814 creating build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,815 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,817 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,819 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,821 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,822 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,824 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,827 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,830 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,832 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,834 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,837 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,839 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,841 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,843 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,845 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,847 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,849 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,851 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,854 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,856 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,858 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T04:57:42,861 creating build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,862 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,864 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,867 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,869 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,872 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,875 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,878 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,881 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,884 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T04:57:42,886 creating build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,888 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,890 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,892 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,894 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,896 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-03-27T04:57:42,899 creating build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,900 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,902 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,904 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,906 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,909 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,911 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,913 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T04:57:42,915 creating build/lib/omicverse/external/tosica 2026-03-27T04:57:42,916 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T04:57:42,918 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T04:57:42,921 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T04:57:42,923 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T04:57:42,925 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T04:57:42,928 creating build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,929 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,931 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,934 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,937 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,939 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,942 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,945 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,947 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,950 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,952 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T04:57:42,955 creating build/lib/omicverse/external/CAST 2026-03-27T04:57:42,956 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,960 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,962 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,965 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,967 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,970 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,973 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T04:57:42,975 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,976 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,979 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,981 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,983 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,984 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T04:57:42,987 creating build/lib/omicverse/external/cnmf 2026-03-27T04:57:42,988 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T04:57:42,991 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T04:57:42,995 creating build/lib/omicverse/external/bulk2single 2026-03-27T04:57:42,996 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T04:57:42,998 creating build/lib/omicverse/external/somde 2026-03-27T04:57:42,999 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T04:57:43,001 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T04:57:43,003 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T04:57:43,006 creating build/lib/omicverse/external/VIA 2026-03-27T04:57:43,007 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,009 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,013 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,018 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,025 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,027 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,033 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T04:57:43,035 creating build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,036 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,038 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,041 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,043 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,045 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,048 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:43,050 creating build/lib/omicverse/external/scMulan 2026-03-27T04:57:43,051 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:57:43,054 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:57:43,057 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T04:57:43,060 creating build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,061 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,063 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,066 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,068 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,070 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,072 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,074 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,077 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,079 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,081 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,083 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,085 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T04:57:43,089 creating build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,090 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,092 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,094 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,096 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,098 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,101 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,103 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,106 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,108 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,111 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,113 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T04:57:43,116 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,117 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,119 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,127 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,130 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,132 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T04:57:43,134 creating build/lib/omicverse/external/GNTD 2026-03-27T04:57:43,136 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:57:43,138 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:57:43,141 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:57:43,143 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T04:57:43,147 creating build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,149 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,152 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,154 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,157 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,161 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,163 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,166 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,168 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,171 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,173 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,176 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,178 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,181 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,184 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,187 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,189 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,191 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,194 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,196 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,198 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,201 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,203 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-03-27T04:57:43,207 creating build/lib/omicverse/external/BINARY 2026-03-27T04:57:43,208 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:57:43,212 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:57:43,214 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:57:43,217 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T04:57:43,220 creating build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,221 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,224 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,226 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,229 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,231 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,234 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,235 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T04:57:43,238 creating build/lib/omicverse/external/datacollect 2026-03-27T04:57:43,239 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:57:43,242 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:57:43,244 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T04:57:43,247 creating build/lib/omicverse/external/spaceflow 2026-03-27T04:57:43,248 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:57:43,250 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:57:43,253 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T04:57:43,255 creating build/lib/omicverse/external/scSLAT 2026-03-27T04:57:43,256 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:57:43,258 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:57:43,260 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T04:57:43,262 creating build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,263 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,266 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,269 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,271 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,273 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,276 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,278 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,281 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,283 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T04:57:43,286 creating build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,287 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,289 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,291 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,293 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,296 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,297 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,300 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,302 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,304 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,306 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,310 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,312 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,315 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,317 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,319 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T04:57:43,321 creating build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,323 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,325 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,327 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,330 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,332 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,335 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T04:57:43,338 creating build/lib/omicverse/external/bin2cell 2026-03-27T04:57:43,340 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T04:57:43,344 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T04:57:43,346 creating build/lib/omicverse/external/PROST 2026-03-27T04:57:43,347 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,350 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,353 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,355 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,357 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,360 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,361 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T04:57:43,364 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,365 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,367 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,370 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,371 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,373 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T04:57:43,376 creating build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,376 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,379 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,382 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,384 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,386 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,389 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,390 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,393 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T04:57:43,395 creating build/lib/omicverse/external/scanorama 2026-03-27T04:57:43,397 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:57:43,399 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:57:43,402 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T04:57:43,405 creating build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,407 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,409 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,412 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,413 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,416 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T04:57:43,419 creating build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,420 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,422 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,425 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,427 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,429 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:43,431 creating build/lib/omicverse/external/mpl_chord 2026-03-27T04:57:43,432 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:57:43,435 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:57:43,437 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T04:57:43,439 creating build/lib/omicverse/external/commot 2026-03-27T04:57:43,440 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T04:57:43,443 creating build/lib/omicverse/external/scrublet 2026-03-27T04:57:43,444 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:57:43,447 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:57:43,450 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T04:57:43,452 creating build/lib/omicverse/external/STT 2026-03-27T04:57:43,453 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T04:57:43,457 creating build/lib/omicverse/external/nocd 2026-03-27T04:57:43,458 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,463 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,468 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,473 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,475 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,477 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T04:57:43,480 creating build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,481 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,484 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,519 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,521 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,523 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,526 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,528 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,531 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,533 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,536 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,538 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,541 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,543 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T04:57:43,546 creating build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,547 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,550 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,553 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,555 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,557 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,559 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T04:57:43,562 creating build/lib/omicverse/external/spaco 2026-03-27T04:57:43,563 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,566 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,569 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,572 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,575 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,577 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,579 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,582 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,584 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T04:57:43,587 creating build/lib/omicverse/external/gaston 2026-03-27T04:57:43,588 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,591 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,593 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,595 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,598 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,600 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,602 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,605 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,607 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,610 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,613 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,615 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,617 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,620 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,622 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,624 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T04:57:43,627 creating build/lib/omicverse/external/mofapy2 2026-03-27T04:57:43,628 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:57:43,631 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:57:43,633 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T04:57:43,635 creating build/lib/omicverse/external/cytotrace2 2026-03-27T04:57:43,637 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:57:43,640 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:57:43,642 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T04:57:43,644 creating build/lib/omicverse/external/scdiffusion 2026-03-27T04:57:43,646 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:57:43,649 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:57:43,651 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:57:43,653 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T04:57:43,656 creating build/lib/omicverse/external/flowsig 2026-03-27T04:57:43,657 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T04:57:43,660 creating build/lib/omicverse/external/topact 2026-03-27T04:57:43,661 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,663 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,665 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,668 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,670 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,674 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,677 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,679 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T04:57:43,682 creating build/lib/omicverse/external/tape 2026-03-27T04:57:43,683 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,686 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,688 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,691 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,693 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,696 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T04:57:43,699 creating build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,700 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,703 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,706 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,709 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,711 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,714 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,717 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,719 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,721 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T04:57:43,725 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:57:43,726 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:57:43,729 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:57:43,731 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T04:57:43,734 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,735 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,739 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,741 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,744 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,747 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,751 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,753 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,757 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T04:57:43,760 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,761 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,763 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,766 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,768 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,771 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T04:57:43,774 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:57:43,775 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:57:43,778 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:57:43,781 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T04:57:43,783 creating build/lib/omicverse/external/single/arboreto 2026-03-27T04:57:43,785 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:57:43,787 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:57:43,791 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:57:43,794 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T04:57:43,796 creating build/lib/omicverse/external/CAST/model 2026-03-27T04:57:43,797 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:57:43,800 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:57:43,803 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T04:57:43,805 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,807 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,809 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,812 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,815 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,817 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,820 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,822 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,824 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,827 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,830 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,832 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,834 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:43,836 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,837 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,839 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,842 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,846 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,849 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,851 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,854 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,857 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,859 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,861 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:43,865 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,866 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,868 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,870 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,873 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,875 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:43,878 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T04:57:43,879 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T04:57:43,881 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T04:57:43,883 creating build/lib/omicverse/external/scMulan/model 2026-03-27T04:57:43,885 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T04:57:43,888 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T04:57:43,891 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:43,893 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:43,896 creating build/lib/omicverse/external/datacollect/config 2026-03-27T04:57:43,897 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T04:57:43,899 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T04:57:43,901 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,902 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,905 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,907 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,910 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,912 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,914 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T04:57:43,917 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,918 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,921 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,923 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,926 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,928 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,931 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,933 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,935 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,938 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,941 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,944 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,947 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,949 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,953 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,956 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,959 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,961 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,964 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,967 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,969 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,972 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,975 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T04:57:43,980 creating build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,982 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,985 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,987 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,991 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,993 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,996 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:43,999 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,001 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,004 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,008 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,011 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,014 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,017 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,020 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,022 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,025 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,028 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,031 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,034 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,037 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,040 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,043 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,045 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,047 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,050 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,052 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,054 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,057 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,059 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,061 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,063 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,065 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,068 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,070 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T04:57:44,073 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:44,074 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:44,077 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:44,079 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:44,082 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:44,084 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,085 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,088 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,090 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,093 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,096 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,098 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T04:57:44,126 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,127 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,130 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,132 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,135 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,138 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,141 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,143 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,145 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:44,148 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,149 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,152 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,154 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,156 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,158 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,161 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,162 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:44,165 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,166 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,169 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,172 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,174 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,177 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,179 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,182 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,184 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,186 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:44,189 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:57:44,190 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:57:44,193 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:57:44,195 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T04:57:44,197 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,198 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,200 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,203 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,205 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,207 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,209 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,211 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,213 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T04:57:44,215 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:44,216 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:44,218 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:44,221 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:44,223 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:44,224 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:44,226 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:44,228 creating build/lib/omicverse/external/space/cell2location 2026-03-27T04:57:44,230 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T04:57:44,232 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T04:57:44,236 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:44,237 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:44,239 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:44,241 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,242 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,245 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,248 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,250 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,253 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:44,255 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:57:44,256 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:57:44,259 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:57:44,261 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T04:57:44,263 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,264 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,267 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,269 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,270 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,273 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:44,276 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:57:44,277 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:57:44,279 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:57:44,281 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T04:57:44,284 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:44,285 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:44,287 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:44,289 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:44,292 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:44,294 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,295 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,297 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,300 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,302 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,304 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,306 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,309 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,311 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T04:57:44,313 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:44,315 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:44,317 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:44,320 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:44,322 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,323 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,325 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,328 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,331 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,332 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:44,335 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:44,336 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:44,338 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:44,341 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:44,343 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:44,344 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:44,346 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:44,348 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:44,351 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,352 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,355 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,357 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,360 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,363 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:44,365 creating build/lib/omicverse/external/commot/plotting 2026-03-27T04:57:44,366 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:57:44,370 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:57:44,373 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T04:57:44,375 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:57:44,377 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:57:44,379 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:57:44,382 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T04:57:44,384 creating build/lib/omicverse/external/commot/tools 2026-03-27T04:57:44,385 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:57:44,390 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:57:44,394 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T04:57:44,397 creating build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,398 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,401 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,403 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,405 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,407 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T04:57:44,411 creating build/lib/omicverse/external/STT/pl 2026-03-27T04:57:44,412 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:57:44,415 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:57:44,418 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:57:44,420 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T04:57:44,422 creating build/lib/omicverse/external/STT/tl 2026-03-27T04:57:44,423 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:57:44,425 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:57:44,427 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:57:44,429 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T04:57:44,432 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T04:57:44,433 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:57:44,435 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:57:44,437 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T04:57:44,439 creating build/lib/omicverse/external/nocd/nn 2026-03-27T04:57:44,440 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:57:44,443 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:57:44,445 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:57:44,446 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T04:57:44,449 creating build/lib/omicverse/external/spaco/external 2026-03-27T04:57:44,450 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T04:57:44,452 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T04:57:44,454 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T04:57:44,455 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T04:57:44,459 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T04:57:44,461 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:57:44,462 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:57:44,464 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T04:57:44,466 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,467 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,470 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,472 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,474 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,476 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T04:57:44,479 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,480 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,482 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,485 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,487 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,489 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,491 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T04:57:44,494 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,495 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,498 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,500 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,502 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,505 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,507 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,509 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,511 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,514 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,517 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,520 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,522 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,525 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,527 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,529 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,532 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,534 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,537 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T04:57:44,540 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,541 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,543 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,547 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,549 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,551 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,553 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,554 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,556 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,560 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,561 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,563 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T04:57:44,567 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,568 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,570 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,573 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,576 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,578 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,580 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,582 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,584 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,587 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,589 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,591 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,594 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,596 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,599 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,601 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,603 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,605 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,607 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:57:44,609 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:57:44,610 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:57:44,612 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:57:44,614 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T04:57:44,616 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:57:44,617 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:57:44,620 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T04:57:44,622 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,623 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,626 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,629 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,631 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,633 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,635 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T04:57:44,638 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:57:44,639 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:57:44,642 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T04:57:44,645 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T04:57:44,646 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:57:44,649 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:57:44,650 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:57:44,653 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T04:57:44,657 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:44,659 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:44,662 creating build/lib/omicverse/llm/dr 2026-03-27T04:57:44,663 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,665 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,668 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,670 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,673 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,675 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T04:57:44,677 creating build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,678 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,681 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,684 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,688 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,693 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,699 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,707 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,711 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,714 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,717 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,720 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,723 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T04:57:44,726 creating build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,727 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,729 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,732 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,734 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,736 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,738 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T04:57:44,741 creating build/lib/omicverse/llm/utils 2026-03-27T04:57:44,742 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T04:57:44,744 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T04:57:44,747 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T04:57:44,749 creating build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,750 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,752 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,755 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,758 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,759 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,762 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T04:57:44,764 creating build/lib/omicverse/llm/domain_research 2026-03-27T04:57:44,765 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T04:57:44,768 creating build/lib/omicverse/llm/CellPLM 2026-03-27T04:57:44,769 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T04:57:44,771 creating build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:44,772 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:44,775 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:44,777 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:44,780 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:44,782 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:57:44,783 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:57:44,786 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T04:57:44,789 creating build/lib/omicverse/llm/dr/research 2026-03-27T04:57:44,790 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:57:44,792 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:57:44,794 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T04:57:44,796 creating build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,797 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,799 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,801 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,803 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,805 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T04:57:44,807 creating build/lib/omicverse/llm/dr/verify 2026-03-27T04:57:44,808 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T04:57:44,811 creating build/lib/omicverse/llm/dr/write 2026-03-27T04:57:44,813 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:57:44,815 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:57:44,817 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T04:57:44,820 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,821 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,823 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,825 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,828 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,830 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,832 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,834 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T04:57:44,837 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,838 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,841 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,843 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,846 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,848 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T04:57:44,851 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:57:44,852 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:57:44,854 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T04:57:44,857 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,858 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,862 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,864 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,866 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,868 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,871 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T04:57:44,874 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,875 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,877 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,878 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,880 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,882 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T04:57:44,885 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:57:44,886 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:57:44,889 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:57:44,891 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:57:44,892 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:57:44,895 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:57:44,897 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T04:57:44,899 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T04:57:44,900 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T04:57:44,903 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T04:57:44,904 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T04:57:44,906 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:57:44,907 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:57:44,910 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T04:57:44,912 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:57:44,913 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:57:44,916 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:57:44,918 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T04:57:44,920 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,921 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,924 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,926 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,928 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,931 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,932 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T04:57:44,935 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:57:44,937 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:57:44,939 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T04:57:44,942 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,943 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,946 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,948 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,950 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,953 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T04:57:44,955 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,956 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,959 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,961 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,964 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,966 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T04:57:44,969 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:57:44,970 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:57:44,972 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T04:57:44,974 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:57:44,975 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:57:44,978 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:57:44,980 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T04:57:44,982 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:57:44,983 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:57:44,986 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:57:44,988 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T04:57:44,990 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:57:44,991 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:57:44,993 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:57:44,996 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:57:44,998 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T04:57:45,001 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,002 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,005 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,007 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,009 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,011 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,014 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,016 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:57:45,019 creating build/lib/omicverse/io/spatial 2026-03-27T04:57:45,020 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T04:57:45,023 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T04:57:45,026 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T04:57:45,028 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T04:57:45,031 creating build/lib/omicverse/io/single 2026-03-27T04:57:45,032 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T04:57:45,035 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T04:57:45,037 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T04:57:45,039 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T04:57:45,042 creating build/lib/omicverse/io/bulk 2026-03-27T04:57:45,043 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T04:57:45,045 creating build/lib/omicverse/io/general 2026-03-27T04:57:45,046 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T04:57:45,049 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T04:57:45,051 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T04:57:45,054 running egg_info 2026-03-27T04:57:45,065 writing omicverse.egg-info/PKG-INFO 2026-03-27T04:57:45,083 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T04:57:45,084 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T04:57:45,093 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T04:57:45,095 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T04:57:45,287 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:45,349 reading manifest template 'MANIFEST.in' 2026-03-27T04:57:46,352 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T04:57:47,731 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T04:57:48,364 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T04:57:52,867 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T04:57:53,337 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T04:57:53,778 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T04:57:54,244 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T04:57:54,711 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T04:57:55,166 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T04:57:55,631 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T04:57:55,634 no previously-included directories found matching '.git' 2026-03-27T04:57:55,637 no previously-included directories found matching '.github' 2026-03-27T04:57:55,641 no previously-included directories found matching '.claude' 2026-03-27T04:57:55,644 no previously-included directories found matching '.pytest_cache' 2026-03-27T04:57:55,648 no previously-included directories found matching '.ruff_cache' 2026-03-27T04:57:55,651 no previously-included directories found matching '.vscode' 2026-03-27T04:57:55,654 no previously-included directories found matching 'docs' 2026-03-27T04:57:55,658 no previously-included directories found matching 'tests' 2026-03-27T04:57:55,661 no previously-included directories found matching 'OvIntelligence' 2026-03-27T04:57:55,664 no previously-included directories found matching 'READMEM' 2026-03-27T04:57:55,668 no previously-included directories found matching 'omicverse_guide' 2026-03-27T04:57:55,672 no previously-included directories found matching 'omicverse_web' 2026-03-27T04:57:55,675 no previously-included directories found matching 'tmp' 2026-03-27T04:57:55,678 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T04:57:55,682 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T04:57:55,688 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T04:57:55,696 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T04:57:55,703 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T04:57:55,703 adding license file 'LICENSE' 2026-03-27T04:57:55,774 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T04:57:55,872 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T04:57:55,875 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T04:57:55,877 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T04:57:55,879 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T04:57:55,882 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T04:57:55,884 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T04:57:55,886 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T04:57:55,891 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T04:57:55,894 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T04:57:55,964 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T04:57:55,966 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T04:57:55,969 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T04:57:55,971 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T04:57:55,974 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T04:57:55,976 creating build/lib/omicverse/single/templates/img 2026-03-27T04:57:55,977 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T04:57:55,980 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:57:55,983 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:57:55,986 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T04:57:55,989 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T04:57:55,992 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T04:57:55,995 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T04:57:55,997 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T04:57:56,000 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T04:57:56,002 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:56,008 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:56,009 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:56,101 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:56,105 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:56,112 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:56,540 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:56,565 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,566 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,569 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,571 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,574 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,577 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,580 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,583 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,585 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,588 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,591 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,593 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,596 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T04:57:56,599 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T04:57:56,601 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:56,603 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:56,607 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:56,611 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:56,612 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:56,616 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:56,620 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:56,624 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:57:56,625 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:57:56,633 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:57:56,641 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T04:57:56,650 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:57:56,651 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:57:56,669 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:57:56,690 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:57:56,706 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:56,709 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:56,712 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:56,714 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T04:57:56,717 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:56,722 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:56,725 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:56,728 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T04:57:56,730 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:57:56,751 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T04:57:56,767 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T04:57:56,768 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T04:57:56,771 creating build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,772 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,775 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,778 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,791 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,811 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T04:57:56,926 installing to build/bdist.linux-armv7l/wheel 2026-03-27T04:57:56,927 running install 2026-03-27T04:57:56,949 running install_lib 2026-03-27T04:57:56,955 creating build/bdist.linux-armv7l/wheel 2026-03-27T04:57:56,958 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T04:57:56,959 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:57:56,962 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T04:57:56,963 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,966 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,969 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,972 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,974 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,978 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,981 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,983 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,985 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,988 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,991 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,994 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,996 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:56,998 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,004 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,006 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,009 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,012 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,015 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,018 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,021 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,023 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,026 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,029 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,032 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,037 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,040 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,042 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,045 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,048 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,051 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,054 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,057 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T04:57:57,059 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,061 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,064 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,066 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,069 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,072 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T04:57:57,074 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:57:57,077 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:57:57,079 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:57:57,083 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T04:57:57,086 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T04:57:57,089 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,092 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,095 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,097 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,101 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,104 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,106 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,109 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,112 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,114 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,117 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,119 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,122 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T04:57:57,137 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T04:57:57,138 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,143 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,146 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,149 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T04:57:57,150 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T04:57:57,152 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,156 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,159 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,162 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,165 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,167 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,169 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,171 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T04:57:57,185 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T04:57:57,186 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,189 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,193 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,195 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,197 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,200 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,203 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,207 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T04:57:57,209 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,212 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,215 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,218 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,220 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,223 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,227 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,229 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,232 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,234 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,237 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,240 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,244 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,247 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,249 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,253 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,257 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,260 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,263 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,265 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,268 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,270 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T04:57:57,273 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,276 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,279 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,283 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T04:57:57,284 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,287 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,290 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,293 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,295 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,298 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,301 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,303 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,306 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,308 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T04:57:57,310 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,313 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,316 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,320 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,322 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,326 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T04:57:57,327 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,330 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,332 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,335 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,336 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,339 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,340 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T04:57:57,343 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,345 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,349 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,351 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,353 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,355 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,357 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,361 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,362 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,387 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,389 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T04:57:57,390 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,392 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,395 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,397 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,399 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,402 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,405 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,407 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,410 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,412 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,415 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,417 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,419 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T04:57:57,422 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,423 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,426 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,429 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,431 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,433 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,435 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,437 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,439 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,444 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T04:57:57,447 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T04:57:57,448 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,451 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,453 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,455 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,458 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,460 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,462 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,465 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,467 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,469 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T04:57:57,472 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T04:57:57,472 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:57:57,475 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:57:57,478 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T04:57:57,480 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T04:57:57,481 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,484 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T04:57:57,485 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:57:57,488 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:57:57,490 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:57:57,492 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:57:57,494 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T04:57:57,496 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,499 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,501 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,503 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,507 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,509 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,511 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,513 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,515 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,517 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,519 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,521 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T04:57:57,524 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:57:57,527 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T04:57:57,528 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:57:57,531 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T04:57:57,532 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,534 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,536 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,537 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,539 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,542 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,543 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,546 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T04:57:57,548 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:57:57,550 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:57:57,553 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:57:57,554 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T04:57:57,558 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T04:57:57,559 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,562 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,566 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,572 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,574 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,576 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,579 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,582 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,584 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,588 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,592 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,594 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,597 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,600 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,605 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,607 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,610 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,612 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,615 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,618 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T04:57:57,620 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:57:57,624 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T04:57:57,625 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,627 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,630 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,632 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,635 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,638 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,641 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,643 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,646 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,650 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,653 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,655 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,658 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,660 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T04:57:57,663 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:57:57,666 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T04:57:57,668 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,671 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,673 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,676 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,678 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,683 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,686 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,689 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,693 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,696 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,699 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,702 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,704 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,708 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,711 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,714 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,717 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,720 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,723 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,726 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,729 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T04:57:57,730 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:57:57,734 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:57:57,736 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T04:57:57,738 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,741 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,745 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T04:57:57,748 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T04:57:57,749 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,752 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,754 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,757 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,759 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,761 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,764 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,766 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,768 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T04:57:57,771 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T04:57:57,772 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T04:57:57,773 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,776 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,778 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,780 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,782 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,784 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,786 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,788 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,790 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,792 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,794 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,796 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T04:57:57,799 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T04:57:57,800 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:57:57,802 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:57:57,804 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:57:57,806 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:57:57,809 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T04:57:57,810 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,813 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,815 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,817 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,820 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,822 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T04:57:57,825 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T04:57:57,826 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,829 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,832 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,834 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,836 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,840 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T04:57:57,841 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:57:57,843 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:57:57,845 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T04:57:57,847 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,850 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,853 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,855 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,858 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T04:57:57,859 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,862 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,865 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,868 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,870 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,874 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,875 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T04:57:57,879 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,881 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,883 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,886 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T04:57:57,887 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T04:57:57,890 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T04:57:57,893 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T04:57:57,894 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,897 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,899 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,900 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,902 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,905 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,907 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T04:57:57,909 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,911 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,913 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,915 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,918 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T04:57:57,921 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T04:57:57,923 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T04:57:57,924 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:57:57,926 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:57:57,928 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T04:57:57,931 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T04:57:57,932 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,934 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,936 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,938 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,940 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,943 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,945 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,947 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,949 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,952 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,956 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T04:57:57,958 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T04:57:57,959 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:57:57,962 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:57:57,965 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T04:57:57,967 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T04:57:57,968 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:57,971 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T04:57:57,972 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:57:57,975 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:57:57,977 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T04:57:57,979 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:57,981 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:57,984 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T04:57:57,985 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:57,989 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:57,991 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:57,994 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:57,997 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:58,000 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:58,002 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:58,006 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T04:57:58,008 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,010 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,011 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,014 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,017 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,019 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,021 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,024 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,026 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,029 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T04:57:58,030 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:57:58,032 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:57:58,033 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:57:58,035 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:57:58,037 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T04:57:58,039 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,042 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T04:57:58,043 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:57:58,045 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:57:58,048 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T04:57:58,049 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,051 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,053 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,055 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,057 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,059 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,061 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,063 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T04:57:58,065 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T04:57:58,066 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,069 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,071 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,074 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,076 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,079 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,082 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,084 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,087 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T04:57:58,090 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-03-27T04:57:58,091 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T04:57:58,093 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T04:57:58,095 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T04:57:58,097 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T04:57:58,100 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T04:57:58,102 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T04:57:58,103 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,105 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,107 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,110 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,112 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,114 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,116 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T04:57:58,118 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T04:57:58,119 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:57:58,121 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:57:58,123 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:57:58,126 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:57:58,128 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T04:57:58,130 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T04:57:58,131 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,133 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,137 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,139 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,141 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,143 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,146 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,149 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,151 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,153 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T04:57:58,156 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T04:57:58,157 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T04:57:58,159 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:57:58,161 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:57:58,163 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:57:58,165 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T04:57:58,168 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T04:57:58,169 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,172 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,174 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,177 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T04:57:58,178 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:57:58,180 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:57:58,182 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T04:57:58,184 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,186 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,188 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,190 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T04:57:58,193 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T04:57:58,194 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:57:58,196 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:57:58,199 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:57:58,200 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:57:58,202 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T04:57:58,204 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T04:57:58,205 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T04:57:58,208 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T04:57:58,212 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T04:57:58,214 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,215 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,217 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,219 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,222 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,223 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,226 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,228 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,230 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,232 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,234 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,236 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,238 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T04:57:58,240 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:58,241 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:58,246 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:58,251 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T04:57:58,333 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,334 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,336 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,339 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,343 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,345 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,348 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,351 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,356 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,359 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,361 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,363 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T04:57:58,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,367 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,370 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,372 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,374 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,376 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T04:57:58,378 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T04:57:58,380 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T04:57:58,381 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:57:58,383 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:57:58,385 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T04:57:58,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T04:57:58,389 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,392 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,396 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,402 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,409 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,411 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,416 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T04:57:58,419 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T04:57:58,420 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,422 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,423 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,426 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,428 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,430 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,433 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T04:57:58,435 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T04:57:58,436 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T04:57:58,438 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T04:57:58,440 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T04:57:58,442 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T04:57:58,443 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T04:57:58,446 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T04:57:58,448 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:57:58,450 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:57:58,453 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T04:57:58,455 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:58,457 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:58,905 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:58,930 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T04:57:58,933 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T04:57:58,936 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T04:57:58,937 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,939 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,942 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,944 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,946 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,948 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,950 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,953 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,955 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,957 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,959 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,961 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T04:57:58,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T04:57:58,966 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,968 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,970 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,973 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,975 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,977 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,979 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,982 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,984 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,986 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,988 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T04:57:58,991 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T04:57:58,992 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:57:58,995 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:57:59,001 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:57:59,003 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:57:59,005 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T04:57:59,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T04:57:59,009 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:57:59,011 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:57:59,013 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:57:59,015 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T04:57:59,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-03-27T04:57:59,020 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,022 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,024 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,026 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,029 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,031 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,033 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,035 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,037 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,040 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,042 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,044 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,046 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,049 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,051 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,053 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,054 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,056 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,058 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,061 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,063 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,065 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T04:57:59,069 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T04:57:59,070 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:57:59,073 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:57:59,075 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:57:59,077 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T04:57:59,080 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T04:57:59,081 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,083 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,084 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,086 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,088 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,090 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,092 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T04:57:59,095 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T04:57:59,097 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:57:59,099 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:57:59,102 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:57:59,104 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T04:57:59,105 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T04:57:59,107 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T04:57:59,109 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T04:57:59,110 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,113 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,115 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,118 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,120 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,122 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T04:57:59,125 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T04:57:59,126 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,129 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,131 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,133 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,136 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,139 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,141 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,144 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,146 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,148 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,151 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,153 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T04:57:59,156 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:57:59,161 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T04:57:59,162 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,164 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,166 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,169 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,171 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,174 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,176 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,178 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,180 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,183 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,185 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,187 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,189 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,192 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,194 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,196 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,199 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,201 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,203 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,205 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,208 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,211 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T04:57:59,213 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T04:57:59,216 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T04:57:59,217 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,220 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,222 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,225 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T04:57:59,226 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:57:59,229 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:57:59,231 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:57:59,233 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T04:57:59,235 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,237 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,239 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,241 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,244 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,245 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,247 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,250 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,252 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,254 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,256 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T04:57:59,258 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,261 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,263 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,265 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,267 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,270 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,272 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,273 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,276 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,278 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,281 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,283 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,285 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,288 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,290 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T04:57:59,292 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,295 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,297 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,300 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,302 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,304 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,306 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,309 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,311 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,312 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,314 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,317 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,319 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,321 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,323 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,325 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T04:57:59,327 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,329 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,332 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,334 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,336 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,338 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,341 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,343 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,345 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,347 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,349 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,351 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,354 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,355 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,358 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,360 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,363 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,365 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,367 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,369 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,372 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,373 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T04:57:59,376 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T04:57:59,379 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T04:57:59,380 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:57:59,382 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:57:59,385 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T04:57:59,389 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T04:57:59,392 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T04:57:59,393 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:57:59,396 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:57:59,398 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T04:57:59,400 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:57:59,402 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T04:57:59,403 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,406 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:59,407 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:59,410 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:59,412 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T04:57:59,414 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,416 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,418 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,420 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,423 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:59,424 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:59,426 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T04:57:59,428 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,429 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,431 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T04:57:59,433 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:57:59,435 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T04:57:59,437 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T04:57:59,438 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,441 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,444 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,446 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,449 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,452 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,454 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,457 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,460 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T04:57:59,463 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T04:57:59,464 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,466 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,468 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,470 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,472 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,474 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,476 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,479 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,481 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,483 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,486 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,488 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,490 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,492 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,494 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T04:57:59,497 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T04:57:59,498 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,500 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,502 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,504 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,506 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,508 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T04:57:59,511 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T04:57:59,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T04:57:59,514 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:59,515 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:59,518 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T04:57:59,520 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T04:57:59,521 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,523 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,526 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:59,527 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:59,530 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:59,532 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T04:57:59,535 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,536 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,538 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,540 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,543 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,545 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T04:57:59,548 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:59,549 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:59,552 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:59,555 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T04:57:59,556 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,559 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:59,560 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:59,563 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:59,564 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T04:57:59,567 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,569 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,572 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T04:57:59,574 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T04:57:59,575 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:57:59,578 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:57:59,580 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T04:57:59,582 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,584 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,586 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,588 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,589 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,592 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T04:57:59,595 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T04:57:59,596 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:57:59,598 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:57:59,600 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T04:57:59,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:59,604 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:59,606 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:59,608 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:59,610 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T04:57:59,612 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,613 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,615 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,618 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,620 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,622 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,624 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,626 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,628 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T04:57:59,631 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T04:57:59,633 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T04:57:59,636 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T04:57:59,637 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T04:57:59,642 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T04:57:59,645 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T04:57:59,646 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,650 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,652 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,655 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,657 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,659 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,661 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T04:57:59,664 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,665 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,667 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,669 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,671 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,673 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T04:57:59,675 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T04:57:59,676 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,679 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,730 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,732 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,735 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,737 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,739 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,741 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T04:57:59,744 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T04:57:59,745 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:57:59,747 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:57:59,749 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T04:57:59,753 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T04:57:59,754 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:57:59,756 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:57:59,759 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:57:59,760 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:57:59,763 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T04:57:59,766 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T04:57:59,767 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,770 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,772 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,773 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,776 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,778 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T04:57:59,780 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T04:57:59,781 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:57:59,784 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:57:59,786 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T04:57:59,788 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T04:57:59,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,791 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,794 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,796 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,799 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,801 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T04:57:59,804 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T04:57:59,805 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:57:59,807 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:57:59,810 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T04:57:59,813 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T04:57:59,814 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T04:57:59,816 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T04:57:59,818 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:59,820 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:59,824 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:59,829 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T04:57:59,833 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:59,834 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:59,838 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T04:57:59,841 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:57:59,843 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:57:59,845 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T04:57:59,848 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T04:57:59,849 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:57:59,852 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:57:59,855 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T04:57:59,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T04:57:59,858 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:57:59,861 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:57:59,863 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:57:59,865 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:57:59,867 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T04:57:59,869 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T04:57:59,871 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T04:57:59,872 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:57:59,875 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:57:59,878 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T04:57:59,880 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T04:57:59,882 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T04:57:59,883 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:57:59,886 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:57:59,889 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:57:59,891 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T04:57:59,893 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T04:57:59,894 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:57:59,896 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:57:59,900 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:57:59,902 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T04:57:59,904 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T04:57:59,907 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T04:57:59,908 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,911 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T04:57:59,912 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:57:59,914 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:57:59,916 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T04:57:59,918 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T04:57:59,919 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:57:59,922 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:57:59,924 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:57:59,925 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T04:57:59,927 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,929 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,931 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,933 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,935 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T04:57:59,937 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T04:57:59,939 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,940 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,943 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,944 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,946 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,949 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,951 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,953 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,954 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,957 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,959 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,961 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,963 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T04:57:59,965 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T04:57:59,966 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,969 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,971 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,973 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,975 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,977 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T04:57:59,979 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T04:57:59,981 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,983 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,986 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,987 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,990 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,992 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,994 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:57:59,998 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T04:57:59,999 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T04:58:00,002 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T04:58:00,004 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:58:00,006 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T04:58:00,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T04:58:00,009 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,012 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,014 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,015 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,017 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,019 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,021 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,023 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,026 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,028 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,030 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,032 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,034 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,037 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,038 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,041 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T04:58:00,043 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T04:58:00,044 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:58:00,046 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T04:58:00,048 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T04:58:00,049 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:58:00,057 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:58:00,066 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:58:00,067 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:58:00,092 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:58:00,109 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T04:58:00,126 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T04:58:00,170 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T04:58:00,174 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T04:58:00,176 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T04:58:00,177 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T04:58:00,179 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T04:58:00,181 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:58:00,184 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T04:58:00,186 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,188 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,190 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,192 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,196 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,199 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,201 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,203 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,205 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,208 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,215 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,430 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,432 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,435 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,437 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,440 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,442 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,445 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,447 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T04:58:00,450 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:58:00,452 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:58:00,454 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:58:00,458 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,459 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,461 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,463 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,466 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,468 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,470 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,472 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,475 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,478 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,480 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,483 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T04:58:00,485 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:58:00,488 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T04:58:00,490 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,492 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,495 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,499 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,501 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,504 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,506 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T04:58:00,508 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T04:58:00,511 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T04:58:00,513 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:58:00,516 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:58:00,518 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T04:58:00,521 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T04:58:00,523 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,524 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,527 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,529 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,533 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,535 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,538 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,540 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,542 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,545 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,547 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,550 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,552 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,554 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,556 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,558 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,560 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,562 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,564 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T04:58:00,566 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:58:00,568 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:58:00,571 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:58:00,573 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T04:58:00,576 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T04:58:00,578 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:58:00,581 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:58:00,584 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T04:58:00,586 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T04:58:00,588 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T04:58:00,590 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T04:58:00,593 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T04:58:00,596 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,598 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,601 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,605 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,609 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,612 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,614 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T04:58:00,618 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T04:58:00,619 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T04:58:00,622 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T04:58:00,625 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T04:58:00,627 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:58:00,630 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:58:00,632 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:58:00,635 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T04:58:00,638 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T04:58:00,640 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T04:58:00,643 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T04:58:00,644 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,647 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,649 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,652 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,654 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,659 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,662 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,665 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T04:58:00,667 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T04:58:00,668 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,671 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,673 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,675 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,677 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,679 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T04:58:00,682 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T04:58:00,683 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,687 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T04:58:00,688 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:58:00,690 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:58:00,693 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:58:00,696 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:58:00,698 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T04:58:00,701 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,704 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,706 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,708 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,711 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,713 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,715 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,716 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T04:58:00,719 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:58:00,722 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T04:58:00,723 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:00,728 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T04:58:00,729 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,731 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,733 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T04:58:00,735 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T04:58:00,737 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T04:58:00,740 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T04:58:00,741 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:58:00,743 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:58:00,745 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T04:58:00,747 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,749 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T04:58:00,750 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:58:00,752 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:58:00,754 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:58:00,756 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:58:00,758 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T04:58:00,760 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T04:58:00,761 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T04:58:00,764 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T04:58:00,765 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:58:00,767 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:58:00,769 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T04:58:00,771 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,773 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,775 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T04:58:00,776 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:00,780 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T04:58:00,781 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,782 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,785 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,787 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,790 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,792 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,794 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,795 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T04:58:00,797 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,800 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,802 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,805 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,807 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,810 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,813 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,816 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,820 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,823 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,826 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,829 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T04:58:00,831 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T04:58:00,832 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,834 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,837 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,839 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,840 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,843 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,845 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,847 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,849 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T04:58:00,852 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,854 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,855 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T04:58:00,857 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T04:58:00,858 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:58:00,861 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:58:00,863 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T04:58:00,866 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T04:58:00,867 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:00,868 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:00,871 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T04:58:00,872 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T04:58:00,874 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T04:58:00,877 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:00,880 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T04:58:00,881 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,884 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,886 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,889 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,891 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,893 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T04:58:00,896 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,897 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,899 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,901 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,902 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,904 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T04:58:00,909 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:00,912 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T04:58:00,913 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:58:00,973 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:58:00,976 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:58:01,012 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T04:58:01,014 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:01,018 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T04:58:01,019 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:58:01,021 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:58:01,024 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T04:58:01,025 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T04:58:01,028 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T04:58:01,029 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T04:58:01,031 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T04:58:01,033 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T04:58:01,034 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T04:58:01,036 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T04:58:01,039 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T04:58:01,041 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T04:58:01,042 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T04:58:01,044 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T04:58:01,046 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T04:58:01,048 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:58:01,050 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:58:01,052 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T04:58:01,055 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,056 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,058 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,060 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,062 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,064 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,066 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T04:58:01,069 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T04:58:01,070 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T04:58:01,073 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T04:58:01,075 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,076 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,078 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,081 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,083 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,086 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T04:58:01,088 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,089 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,092 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,094 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,096 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,098 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T04:58:01,101 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T04:58:01,102 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T04:58:01,104 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T04:58:01,106 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T04:58:01,107 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:58:01,110 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:58:01,112 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T04:58:01,114 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T04:58:01,115 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:58:01,119 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:58:01,121 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T04:58:01,122 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T04:58:01,124 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T04:58:01,125 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:58:01,127 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:58:01,130 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:58:01,132 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T04:58:01,133 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,137 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,140 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,142 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,145 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,147 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,152 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T04:58:01,154 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T04:58:01,155 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T04:58:01,157 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,159 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,162 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,163 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,167 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,173 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,175 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,178 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,179 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,182 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,184 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,186 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,188 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,190 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,192 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T04:58:01,194 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T04:58:01,196 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,200 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,202 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,208 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T04:58:01,210 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:58:01,213 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T04:58:01,216 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T04:58:01,217 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:58:01,226 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:58:01,228 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:58:01,230 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T04:58:01,232 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:58:01,234 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:58:01,236 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:58:01,260 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:58:01,281 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T04:58:01,314 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:58:01,316 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T04:58:01,529 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T04:58:01,531 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T04:58:01,533 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:58:01,536 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:58:01,539 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:58:01,541 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T04:58:01,544 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T04:58:01,545 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:58:01,548 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:58:01,550 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:58:01,552 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T04:58:01,555 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T04:58:01,556 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T04:58:01,559 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T04:58:01,560 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:58:01,561 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:58:01,563 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T04:58:01,565 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T04:58:01,567 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T04:58:01,568 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,571 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,574 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,577 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,580 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,582 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,585 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,588 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,590 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,594 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T04:58:01,596 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T04:58:01,597 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T04:58:01,601 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T04:58:01,602 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:58:01,604 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:58:01,608 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T04:58:01,610 running install_egg_info 2026-03-27T04:58:01,616 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.0.10rc1-py3.11.egg-info 2026-03-27T04:58:01,635 running install_scripts 2026-03-27T04:58:01,653 creating build/bdist.linux-armv7l/wheel/omicverse-2.0.10rc1.dist-info/WHEEL 2026-03-27T04:58:01,657 creating '/tmp/pip-wheel-40mnooi4/.tmp-5e07gvtr/omicverse-2.0.10rc1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T04:58:01,661 adding 'omicverse/__init__.py' 2026-03-27T04:58:01,663 adding 'omicverse/_lazy_loader.py' 2026-03-27T04:58:01,665 adding 'omicverse/_monitor.py' 2026-03-27T04:58:01,673 adding 'omicverse/_registry.py' 2026-03-27T04:58:01,679 adding 'omicverse/_settings.py' 2026-03-27T04:58:01,684 adding 'omicverse/claw.py' 2026-03-27T04:58:01,686 adding 'omicverse/cli.py' 2026-03-27T04:58:01,689 adding 'omicverse/agent/__init__.py' 2026-03-27T04:58:01,693 adding 'omicverse/alignment/STAR.py' 2026-03-27T04:58:01,695 adding 'omicverse/alignment/__init__.py' 2026-03-27T04:58:01,698 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T04:58:01,701 adding 'omicverse/alignment/fastp.py' 2026-03-27T04:58:01,704 adding 'omicverse/alignment/featureCount.py' 2026-03-27T04:58:01,706 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T04:58:01,709 adding 'omicverse/alignment/kb_api.py' 2026-03-27T04:58:01,712 adding 'omicverse/alignment/pipeline.py' 2026-03-27T04:58:01,713 adding 'omicverse/alignment/prefetch.py' 2026-03-27T04:58:01,715 adding 'omicverse/biocontext/__init__.py' 2026-03-27T04:58:01,717 adding 'omicverse/biocontext/_client.py' 2026-03-27T04:58:01,720 adding 'omicverse/biocontext/_tools.py' 2026-03-27T04:58:01,725 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T04:58:01,728 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T04:58:01,732 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T04:58:01,733 adding 'omicverse/bulk/__init__.py' 2026-03-27T04:58:01,775 adding 'omicverse/bulk/_chm13.py' 2026-03-27T04:58:01,782 adding 'omicverse/bulk/_combat.py' 2026-03-27T04:58:01,785 adding 'omicverse/bulk/_decov.py' 2026-03-27T04:58:01,786 adding 'omicverse/bulk/_df_apply.py' 2026-03-27T04:58:01,791 adding 'omicverse/bulk/_dynamicTree.py' 2026-03-27T04:58:01,794 adding 'omicverse/bulk/_network.py' 2026-03-27T04:58:01,797 adding 'omicverse/bulk/_tcga.py' 2026-03-27T04:58:01,801 adding 'omicverse/bulk/_alignment/__init__.py' 2026-03-27T04:58:01,803 adding 'omicverse/bulk2single/__init__.py' 2026-03-27T04:58:01,807 adding 'omicverse/bulk2single/_bulk2single.py' 2026-03-27T04:58:01,808 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-03-27T04:58:01,811 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-03-27T04:58:01,817 adding 'omicverse/bulk2single/_map_utils.py' 2026-03-27T04:58:01,822 adding 'omicverse/bulk2single/_map_utils1.py' 2026-03-27T04:58:01,825 adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T04:58:01,828 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T04:58:01,831 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T04:58:01,833 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T04:58:01,836 adding 'omicverse/data_files/README.md' 2026-03-27T04:58:01,876 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T04:58:01,879 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T04:58:02,404 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T04:58:02,435 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T04:58:02,439 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T04:58:02,441 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T04:58:02,465 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T04:58:02,511 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T04:58:02,555 adding 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2026-03-27T04:58:04,057 adding 'omicverse/external/datacollect/collectors/gwas_catalog_collector.py' 2026-03-27T04:58:04,059 adding 'omicverse/external/datacollect/collectors/interpro_collector.py' 2026-03-27T04:58:04,061 adding 'omicverse/external/datacollect/collectors/kegg_collector.py' 2026-03-27T04:58:04,063 adding 'omicverse/external/datacollect/collectors/opentargets_collector.py' 2026-03-27T04:58:04,065 adding 'omicverse/external/datacollect/collectors/opentargets_genetics_collector.py' 2026-03-27T04:58:04,067 adding 'omicverse/external/datacollect/collectors/pdb_collector.py' 2026-03-27T04:58:04,069 adding 'omicverse/external/datacollect/collectors/pride_collector.py' 2026-03-27T04:58:04,071 adding 'omicverse/external/datacollect/collectors/reactome_collector.py' 2026-03-27T04:58:04,075 adding 'omicverse/external/datacollect/collectors/regulomedb_collector.py' 2026-03-27T04:58:04,077 adding 'omicverse/external/datacollect/collectors/string_collector.py' 2026-03-27T04:58:04,079 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2026-03-27T04:58:04,256 adding 'omicverse/external/harmony/lisi.py' 2026-03-27T04:58:04,258 adding 'omicverse/external/hotspot/__init__.py' 2026-03-27T04:58:04,259 adding 'omicverse/external/hotspot/bernoulli_model.py' 2026-03-27T04:58:04,261 adding 'omicverse/external/hotspot/danb_model.py' 2026-03-27T04:58:04,264 adding 'omicverse/external/hotspot/hotspot.py' 2026-03-27T04:58:04,267 adding 'omicverse/external/hotspot/knn.py' 2026-03-27T04:58:04,269 adding 'omicverse/external/hotspot/local_stats.py' 2026-03-27T04:58:04,271 adding 'omicverse/external/hotspot/local_stats_pairs.py' 2026-03-27T04:58:04,273 adding 'omicverse/external/hotspot/modules.py' 2026-03-27T04:58:04,274 adding 'omicverse/external/hotspot/none_model.py' 2026-03-27T04:58:04,275 adding 'omicverse/external/hotspot/normal_model.py' 2026-03-27T04:58:04,277 adding 'omicverse/external/hotspot/plots.py' 2026-03-27T04:58:04,278 adding 'omicverse/external/hotspot/sim_data.py' 2026-03-27T04:58:04,280 adding 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2026-03-27T04:58:04,300 adding 'omicverse/external/latentvelo/tl.py' 2026-03-27T04:58:04,302 adding 'omicverse/external/latentvelo/train.py' 2026-03-27T04:58:04,303 adding 'omicverse/external/latentvelo/trainer.py' 2026-03-27T04:58:04,305 adding 'omicverse/external/latentvelo/trainer_anvi.py' 2026-03-27T04:58:04,307 adding 'omicverse/external/latentvelo/trainer_anvi_nogcn.py' 2026-03-27T04:58:04,309 adding 'omicverse/external/latentvelo/trainer_atac.py' 2026-03-27T04:58:04,310 adding 'omicverse/external/latentvelo/trainer_nogcn.py' 2026-03-27T04:58:04,314 adding 'omicverse/external/latentvelo/utils.py' 2026-03-27T04:58:04,315 adding 'omicverse/external/latentvelo/velocity_genes.py' 2026-03-27T04:58:04,317 adding 'omicverse/external/latentvelo/evaluation/__init__.py' 2026-03-27T04:58:04,319 adding 'omicverse/external/latentvelo/evaluation/metrics.py' 2026-03-27T04:58:04,320 adding 'omicverse/external/latentvelo/evaluation/run_metric.py' 2026-03-27T04:58:04,322 adding 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sha256=0ded926aa363fb1b43e663e609f748c6686ec6351abad6c24c565400eeb9c0a2 2026-03-27T04:58:10,963 Stored in directory: /tmp/pip-ephem-wheel-cache-7sph86tz/wheels/41/8d/93/61d5ebd409c73500ebae31a5fc26cc0344529979e257476774 2026-03-27T04:58:11,044 Successfully built omicverse 2026-03-27T04:58:11,331 Removed build tracker: '/tmp/pip-build-tracker-b3xicb1m'