2026-03-27T05:52:06,463 Created temporary directory: /tmp/pip-ephem-wheel-cache-1ot7190b 2026-03-27T05:52:06,465 Created temporary directory: /tmp/pip-build-tracker-5wsv2gze 2026-03-27T05:52:06,466 Initialized build tracking at /tmp/pip-build-tracker-5wsv2gze 2026-03-27T05:52:06,466 Created build tracker: /tmp/pip-build-tracker-5wsv2gze 2026-03-27T05:52:06,467 Entered build tracker: /tmp/pip-build-tracker-5wsv2gze 2026-03-27T05:52:06,468 Created temporary directory: /tmp/pip-wheel-rorj7bo7 2026-03-27T05:52:06,470 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T05:52:06,473 Created temporary directory: /tmp/pip-ephem-wheel-cache-psrg1syw 2026-03-27T05:52:06,494 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T05:52:06,498 2 location(s) to search for versions of omicverse: 2026-03-27T05:52:06,498 * https://pypi.org/simple/omicverse/ 2026-03-27T05:52:06,498 * https://www.piwheels.org/simple/omicverse/ 2026-03-27T05:52:06,498 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-27T05:52:06,499 Getting page https://pypi.org/simple/omicverse/ 2026-03-27T05:52:06,500 Found index url https://pypi.org/simple 2026-03-27T05:52:06,650 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-27T05:52:06,674 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.3-py3-none-any.whl#sha256=4f60a1d234a3b91ef288b3319c30e925923f86bede48948307ba573d7058f598 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,005 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.2-py3-none-any.whl#sha256=46204165e625355c881fae9a0289295de89da868f61777f89430b974c5e49502 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,006 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,006 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,007 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,007 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,008 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,008 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,009 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,010 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,010 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,011 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,011 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,011 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,012 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,012 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,013 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,013 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,014 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,014 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,015 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T05:52:07,015 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T05:52:07,016 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T05:52:07,042 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T05:52:07,060 Collecting omicverse==2.1.0 2026-03-27T05:52:07,062 Created temporary directory: /tmp/pip-unpack-1xwednor 2026-03-27T05:52:07,291 Downloading omicverse-2.1.0.tar.gz (11.9 MB) 2026-03-27T05:52:13,958 Added omicverse==2.1.0 from https://files.pythonhosted.org/packages/d2/b8/1320e970ed6afaafbec8c48cfa149393895d7b8ac76f644720feb3fb941d/omicverse-2.1.0.tar.gz to build tracker '/tmp/pip-build-tracker-5wsv2gze' 2026-03-27T05:52:13,965 Created temporary directory: /tmp/pip-build-env-wphkbc_z 2026-03-27T05:52:13,969 Installing build dependencies: started 2026-03-27T05:52:13,971 Running command pip subprocess to install build dependencies 2026-03-27T05:52:15,135 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T05:52:15,595 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T05:52:15,620 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T05:52:17,638 Collecting setuptools>=61 2026-03-27T05:52:17,735 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T05:52:18,031 Collecting wheel 2026-03-27T05:52:18,047 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T05:52:20,142 Collecting Cython 2026-03-27T05:52:20,919 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T05:52:21,399 Collecting packaging>=24.0 2026-03-27T05:52:21,419 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T05:52:24,455 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T05:52:31,920 Creating /tmp/pip-build-env-wphkbc_z/overlay/local/bin 2026-03-27T05:52:31,922 changing mode of /tmp/pip-build-env-wphkbc_z/overlay/local/bin/cygdb to 755 2026-03-27T05:52:31,924 changing mode of /tmp/pip-build-env-wphkbc_z/overlay/local/bin/cython to 755 2026-03-27T05:52:31,926 changing mode of /tmp/pip-build-env-wphkbc_z/overlay/local/bin/cythonize to 755 2026-03-27T05:52:32,050 changing mode of /tmp/pip-build-env-wphkbc_z/overlay/local/bin/wheel to 755 2026-03-27T05:52:32,078 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T05:52:32,452 Installing build dependencies: finished with status 'done' 2026-03-27T05:52:32,458 Getting requirements to build wheel: started 2026-03-27T05:52:32,459 Running command Getting requirements to build wheel 2026-03-27T05:52:33,181 /tmp/pip-build-env-wphkbc_z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T05:52:33,181 !! 2026-03-27T05:52:33,183 ******************************************************************************** 2026-03-27T05:52:33,183 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T05:52:33,184 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T05:52:33,185 or your builds will no longer be supported. 2026-03-27T05:52:33,186 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T05:52:33,186 ******************************************************************************** 2026-03-27T05:52:33,187 !! 2026-03-27T05:52:33,188 corresp(dist, value, root_dir) 2026-03-27T05:52:33,463 running egg_info 2026-03-27T05:52:33,470 writing omicverse.egg-info/PKG-INFO 2026-03-27T05:52:33,488 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T05:52:33,490 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T05:52:33,499 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T05:52:33,501 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T05:52:33,753 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T05:52:33,877 reading manifest template 'MANIFEST.in' 2026-03-27T05:52:35,196 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T05:52:37,002 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T05:52:37,433 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T05:52:42,102 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T05:52:42,594 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T05:52:43,088 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T05:52:43,671 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T05:52:44,697 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T05:52:45,182 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T05:52:45,697 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T05:52:45,702 no previously-included directories found matching '.git' 2026-03-27T05:52:45,706 no previously-included directories found matching '.github' 2026-03-27T05:52:45,711 no previously-included directories found matching '.claude' 2026-03-27T05:52:45,715 no previously-included directories found matching '.pytest_cache' 2026-03-27T05:52:45,720 no previously-included directories found matching '.ruff_cache' 2026-03-27T05:52:45,724 no previously-included directories found matching '.vscode' 2026-03-27T05:52:45,729 no previously-included directories found matching 'docs' 2026-03-27T05:52:45,733 no previously-included directories found matching 'tests' 2026-03-27T05:52:45,737 no previously-included directories found matching 'OvIntelligence' 2026-03-27T05:52:45,742 no previously-included directories found matching 'READMEM' 2026-03-27T05:52:45,746 no previously-included directories found matching 'omicverse_guide' 2026-03-27T05:52:45,751 no previously-included directories found matching 'omicverse_web' 2026-03-27T05:52:45,755 no previously-included directories found matching 'tmp' 2026-03-27T05:52:45,760 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T05:52:45,764 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T05:52:45,773 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T05:52:45,783 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T05:52:45,788 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T05:52:45,788 adding license file 'LICENSE' 2026-03-27T05:52:45,862 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T05:52:45,976 Getting requirements to build wheel: finished with status 'done' 2026-03-27T05:52:45,979 Created temporary directory: /tmp/pip-modern-metadata-a0jco842 2026-03-27T05:52:45,982 Preparing metadata (pyproject.toml): started 2026-03-27T05:52:45,983 Running command Preparing metadata (pyproject.toml) 2026-03-27T05:52:46,623 /tmp/pip-build-env-wphkbc_z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T05:52:46,623 !! 2026-03-27T05:52:46,624 ******************************************************************************** 2026-03-27T05:52:46,625 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T05:52:46,625 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T05:52:46,626 or your builds will no longer be supported. 2026-03-27T05:52:46,627 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T05:52:46,627 ******************************************************************************** 2026-03-27T05:52:46,628 !! 2026-03-27T05:52:46,628 corresp(dist, value, root_dir) 2026-03-27T05:52:46,912 running dist_info 2026-03-27T05:52:46,924 creating /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info 2026-03-27T05:52:46,925 writing /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/PKG-INFO 2026-03-27T05:52:46,943 writing dependency_links to /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/dependency_links.txt 2026-03-27T05:52:46,944 writing entry points to /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/entry_points.txt 2026-03-27T05:52:46,954 writing requirements to /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/requires.txt 2026-03-27T05:52:46,955 writing top-level names to /tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/top_level.txt 2026-03-27T05:52:46,956 writing manifest file '/tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/SOURCES.txt' 2026-03-27T05:52:47,162 reading manifest file '/tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/SOURCES.txt' 2026-03-27T05:52:47,164 reading manifest template 'MANIFEST.in' 2026-03-27T05:52:48,071 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T05:52:49,609 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T05:52:50,070 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T05:52:55,172 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T05:52:56,246 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T05:52:56,734 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T05:52:57,203 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T05:52:57,642 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T05:52:58,104 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T05:52:58,548 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T05:52:58,551 no previously-included directories found matching '.git' 2026-03-27T05:52:58,553 no previously-included directories found matching '.github' 2026-03-27T05:52:58,555 no previously-included directories found matching '.claude' 2026-03-27T05:52:58,557 no previously-included directories found matching '.pytest_cache' 2026-03-27T05:52:58,559 no previously-included directories found matching '.ruff_cache' 2026-03-27T05:52:58,561 no previously-included directories found matching '.vscode' 2026-03-27T05:52:58,563 no previously-included directories found matching 'docs' 2026-03-27T05:52:58,565 no previously-included directories found matching 'tests' 2026-03-27T05:52:58,567 no previously-included directories found matching 'OvIntelligence' 2026-03-27T05:52:58,569 no previously-included directories found matching 'READMEM' 2026-03-27T05:52:58,571 no previously-included directories found matching 'omicverse_guide' 2026-03-27T05:52:58,574 no previously-included directories found matching 'omicverse_web' 2026-03-27T05:52:58,576 no previously-included directories found matching 'tmp' 2026-03-27T05:52:58,578 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T05:52:58,580 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T05:52:58,584 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T05:52:58,590 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T05:52:58,594 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T05:52:58,595 adding license file 'LICENSE' 2026-03-27T05:52:58,651 writing manifest file '/tmp/pip-modern-metadata-a0jco842/omicverse.egg-info/SOURCES.txt' 2026-03-27T05:52:58,655 creating '/tmp/pip-modern-metadata-a0jco842/omicverse-2.1.0.dist-info' 2026-03-27T05:52:58,800 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T05:52:58,815 Source in /tmp/pip-wheel-rorj7bo7/omicverse_1b2a23f23198498d972035c2627c1faa has version 2.1.0, which satisfies requirement omicverse==2.1.0 from https://files.pythonhosted.org/packages/d2/b8/1320e970ed6afaafbec8c48cfa149393895d7b8ac76f644720feb3fb941d/omicverse-2.1.0.tar.gz 2026-03-27T05:52:58,818 Removed omicverse==2.1.0 from https://files.pythonhosted.org/packages/d2/b8/1320e970ed6afaafbec8c48cfa149393895d7b8ac76f644720feb3fb941d/omicverse-2.1.0.tar.gz from build tracker '/tmp/pip-build-tracker-5wsv2gze' 2026-03-27T05:52:58,843 Created temporary directory: /tmp/pip-unpack-iv1d71yb 2026-03-27T05:52:58,844 Building wheels for collected packages: omicverse 2026-03-27T05:52:58,848 Created temporary directory: /tmp/pip-wheel-5ms4z7fa 2026-03-27T05:52:58,849 Destination directory: /tmp/pip-wheel-5ms4z7fa 2026-03-27T05:52:58,851 Building wheel for omicverse (pyproject.toml): started 2026-03-27T05:52:58,852 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T05:52:59,509 /tmp/pip-build-env-wphkbc_z/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T05:52:59,509 !! 2026-03-27T05:52:59,510 ******************************************************************************** 2026-03-27T05:52:59,511 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T05:52:59,512 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T05:52:59,512 or your builds will no longer be supported. 2026-03-27T05:52:59,514 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T05:52:59,514 ******************************************************************************** 2026-03-27T05:52:59,515 !! 2026-03-27T05:52:59,516 corresp(dist, value, root_dir) 2026-03-27T05:52:59,784 running bdist_wheel 2026-03-27T05:52:59,804 running build 2026-03-27T05:52:59,804 running build_py 2026-03-27T05:52:59,811 creating build/lib/omicverse 2026-03-27T05:52:59,814 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T05:52:59,816 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T05:52:59,819 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T05:52:59,822 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T05:52:59,824 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T05:52:59,827 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T05:52:59,830 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T05:52:59,832 creating build/lib/omicverse/agent 2026-03-27T05:52:59,834 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T05:52:59,837 creating build/lib/omicverse/pp 2026-03-27T05:52:59,838 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,840 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,843 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,846 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,848 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,851 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,853 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,855 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,858 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,861 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,864 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,866 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,868 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,870 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,873 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,876 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,879 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,883 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,885 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,887 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,889 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,892 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,894 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T05:52:59,897 creating build/lib/omicverse/space 2026-03-27T05:52:59,898 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T05:52:59,902 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T05:52:59,905 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T05:52:59,908 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T05:52:59,911 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T05:52:59,913 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T05:52:59,916 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T05:52:59,918 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T05:52:59,921 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T05:52:59,924 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T05:52:59,927 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T05:52:59,930 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T05:52:59,932 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T05:52:59,935 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T05:52:59,938 creating build/lib/omicverse/llm 2026-03-27T05:52:59,939 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,943 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,948 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,952 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,956 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,961 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,963 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,968 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,971 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,973 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,975 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,978 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T05:52:59,980 creating build/lib/omicverse/bulk 2026-03-27T05:52:59,981 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T05:52:59,984 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T05:52:59,996 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T05:52:59,998 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,000 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,002 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,006 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,009 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,012 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,015 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,017 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T05:53:00,020 creating build/lib/omicverse/pl 2026-03-27T05:53:00,021 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,025 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,029 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,040 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,046 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,050 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,053 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,056 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,062 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,064 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,067 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,072 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,074 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,077 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,080 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,083 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,087 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,090 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,094 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,096 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T05:53:00,101 creating build/lib/omicverse/datasets 2026-03-27T05:53:00,102 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T05:53:00,105 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T05:53:00,108 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T05:53:00,111 creating build/lib/omicverse/jarvis 2026-03-27T05:53:00,112 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,115 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,117 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,120 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,123 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,127 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,130 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,132 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,135 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,138 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,140 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,143 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,145 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,147 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T05:53:00,151 creating build/lib/omicverse/fm 2026-03-27T05:53:00,152 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T05:53:00,155 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T05:53:00,158 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T05:53:00,161 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T05:53:00,164 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T05:53:00,168 creating build/lib/omicverse/alignment 2026-03-27T05:53:00,169 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,172 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,174 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,176 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,178 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,181 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,183 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,186 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,188 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T05:53:00,191 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,192 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,194 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,196 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,199 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,201 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,203 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,205 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,208 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,210 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:00,213 creating build/lib/omicverse/popv 2026-03-27T05:53:00,214 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,217 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,220 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,223 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,225 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,227 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T05:53:00,231 creating build/lib/omicverse/mcp 2026-03-27T05:53:00,232 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,235 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,237 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,240 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,244 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,246 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,249 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,252 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,254 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,256 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,258 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,261 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,263 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T05:53:00,266 creating build/lib/omicverse/external 2026-03-27T05:53:00,267 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T05:53:00,270 creating build/lib/omicverse/io 2026-03-27T05:53:00,271 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T05:53:00,274 creating build/lib/omicverse/bulk2single 2026-03-27T05:53:00,275 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,278 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,280 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,283 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,286 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,289 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,291 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,293 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,296 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,298 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T05:53:00,300 creating build/lib/omicverse/biocontext 2026-03-27T05:53:00,301 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T05:53:00,304 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T05:53:00,307 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T05:53:00,310 creating build/lib/omicverse/utils 2026-03-27T05:53:00,311 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,314 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,315 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,318 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,320 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,322 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,324 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,327 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,331 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,333 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,336 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,339 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,341 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,343 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,347 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,350 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,352 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,354 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,356 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,359 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,363 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,366 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,368 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,371 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,373 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,375 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,378 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,380 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,386 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,389 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,392 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,395 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,398 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,400 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,403 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T05:53:00,406 creating build/lib/omicverse/data_files 2026-03-27T05:53:00,408 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T05:53:00,412 creating build/lib/omicverse/single 2026-03-27T05:53:00,413 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T05:53:00,416 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T05:53:00,419 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T05:53:00,421 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T05:53:00,425 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T05:53:00,428 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T05:53:00,430 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T05:53:00,433 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T05:53:00,436 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T05:53:00,439 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T05:53:00,442 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T05:53:00,444 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T05:53:00,448 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T05:53:00,451 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T05:53:00,455 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T05:53:00,458 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T05:53:00,461 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T05:53:00,463 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T05:53:00,467 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T05:53:00,474 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T05:53:00,477 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T05:53:00,481 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T05:53:00,484 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T05:53:00,487 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T05:53:00,490 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T05:53:00,493 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T05:53:00,496 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T05:53:00,498 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T05:53:00,501 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T05:53:00,503 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T05:53:00,506 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T05:53:00,510 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T05:53:00,513 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T05:53:00,515 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T05:53:00,517 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T05:53:00,519 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T05:53:00,526 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T05:53:00,528 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T05:53:00,531 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T05:53:00,534 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T05:53:00,536 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T05:53:00,539 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T05:53:00,541 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T05:53:00,544 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T05:53:00,547 creating build/lib/omicverse/pp/experimental 2026-03-27T05:53:00,548 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T05:53:00,551 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T05:53:00,553 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T05:53:00,556 creating build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,557 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,560 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,563 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,566 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,570 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,573 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,575 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,578 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,581 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,584 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,587 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,589 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T05:53:00,591 creating build/lib/omicverse/llm/CellPLM 2026-03-27T05:53:00,592 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T05:53:00,595 creating build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:00,596 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:00,598 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:00,600 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:00,603 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:00,607 creating build/lib/omicverse/llm/dr 2026-03-27T05:53:00,608 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,611 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,613 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,615 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,617 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,619 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T05:53:00,622 creating build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,623 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,625 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,628 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,630 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,632 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,634 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T05:53:00,636 creating build/lib/omicverse/llm/utils 2026-03-27T05:53:00,637 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T05:53:00,639 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T05:53:00,642 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T05:53:00,645 creating build/lib/omicverse/llm/domain_research 2026-03-27T05:53:00,646 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T05:53:00,648 creating build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,649 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,652 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,654 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,656 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,658 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,660 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T05:53:00,662 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,664 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,667 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,670 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,672 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,674 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,676 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,678 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T05:53:00,680 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T05:53:00,681 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T05:53:00,684 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T05:53:00,686 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,687 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,689 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,691 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,694 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,696 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:00,699 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T05:53:00,700 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T05:53:00,702 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T05:53:00,704 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,704 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,707 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,709 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,712 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,714 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T05:53:00,716 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T05:53:00,717 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T05:53:00,719 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T05:53:00,721 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T05:53:00,722 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T05:53:00,725 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T05:53:00,727 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T05:53:00,729 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T05:53:00,730 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T05:53:00,732 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T05:53:00,734 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T05:53:00,736 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T05:53:00,737 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T05:53:00,739 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T05:53:00,741 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T05:53:00,743 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T05:53:00,745 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,746 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,749 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,751 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,753 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,755 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,758 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T05:53:00,760 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T05:53:00,762 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T05:53:00,764 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T05:53:00,766 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T05:53:00,770 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,771 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,774 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,777 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,780 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,782 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,785 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,787 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:00,790 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T05:53:00,792 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T05:53:00,795 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T05:53:00,798 creating build/lib/omicverse/llm/dr/verify 2026-03-27T05:53:00,800 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T05:53:00,804 creating build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,807 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,811 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,816 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,821 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,827 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T05:53:00,833 creating build/lib/omicverse/llm/dr/write 2026-03-27T05:53:00,836 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T05:53:00,845 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T05:53:00,853 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T05:53:00,896 creating build/lib/omicverse/llm/dr/research 2026-03-27T05:53:00,897 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T05:53:00,900 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T05:53:00,902 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T05:53:00,906 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,907 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,912 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,914 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,917 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,920 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,925 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T05:53:00,928 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T05:53:00,929 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T05:53:00,933 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T05:53:00,936 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T05:53:00,939 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,941 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,944 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,948 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,950 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,953 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T05:53:00,956 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:00,958 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:00,961 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:00,964 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T05:53:00,965 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T05:53:00,968 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T05:53:00,971 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T05:53:00,972 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T05:53:00,974 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T05:53:00,976 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T05:53:00,978 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,980 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,983 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,986 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,988 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,991 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T05:53:00,994 creating build/lib/omicverse/bulk/_alignment 2026-03-27T05:53:00,995 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T05:53:00,998 creating build/lib/omicverse/jarvis/memory 2026-03-27T05:53:00,999 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T05:53:01,002 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T05:53:01,005 creating build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,006 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,009 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,011 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,013 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,015 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,017 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,019 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T05:53:01,022 creating build/lib/omicverse/jarvis/gateway 2026-03-27T05:53:01,023 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T05:53:01,025 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T05:53:01,028 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T05:53:01,030 creating build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,031 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,034 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,037 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,041 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,045 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,049 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,052 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T05:53:01,054 creating build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,055 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,057 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,059 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,061 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,063 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,065 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,067 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,069 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T05:53:01,072 creating build/lib/omicverse/popv/hub 2026-03-27T05:53:01,073 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T05:53:01,075 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T05:53:01,077 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T05:53:01,080 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T05:53:01,082 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T05:53:01,084 creating build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,085 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,087 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,089 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,091 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,094 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,096 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,098 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,100 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,102 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,105 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,107 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,110 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T05:53:01,112 creating build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,113 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,116 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,119 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,121 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,123 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T05:53:01,125 creating build/lib/omicverse/external/scSLAT 2026-03-27T05:53:01,126 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T05:53:01,128 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T05:53:01,130 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T05:53:01,133 creating build/lib/omicverse/external/gaston 2026-03-27T05:53:01,134 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,136 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,138 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,140 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,142 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,145 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,147 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,149 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,151 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,153 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,155 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,157 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,159 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,161 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,163 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,165 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T05:53:01,167 creating build/lib/omicverse/external/spaceflow 2026-03-27T05:53:01,169 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T05:53:01,170 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T05:53:01,173 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T05:53:01,176 creating build/lib/omicverse/external/scrublet 2026-03-27T05:53:01,177 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T05:53:01,179 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T05:53:01,182 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T05:53:01,184 creating build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,185 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,187 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,189 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,192 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,194 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,196 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T05:53:01,199 creating build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,200 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,203 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,206 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,208 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,212 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,215 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,216 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,218 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,222 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,225 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,227 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,231 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,233 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,235 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,238 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T05:53:01,240 creating build/lib/omicverse/external/bin2cell 2026-03-27T05:53:01,241 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T05:53:01,248 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T05:53:01,251 creating build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,252 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,254 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,256 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,259 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,261 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,263 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,265 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T05:53:01,267 creating build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,269 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,271 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,274 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,277 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,280 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,281 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,284 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,286 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,288 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,291 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,293 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T05:53:01,295 creating build/lib/omicverse/external/GNTD 2026-03-27T05:53:01,296 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T05:53:01,298 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T05:53:01,300 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T05:53:01,302 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T05:53:01,305 creating build/lib/omicverse/external/harmony 2026-03-27T05:53:01,306 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T05:53:01,309 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T05:53:01,311 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T05:53:01,313 creating build/lib/omicverse/external/mpl_chord 2026-03-27T05:53:01,314 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T05:53:01,316 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T05:53:01,319 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T05:53:01,322 creating build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,323 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,325 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,327 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,330 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,332 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-03-27T05:53:01,334 creating build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,335 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,338 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,340 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,342 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,345 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T05:53:01,347 creating build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,349 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,351 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,353 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,357 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,360 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,362 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,365 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,367 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,369 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,370 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,372 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,375 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,377 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T05:53:01,379 creating build/lib/omicverse/external/spaco 2026-03-27T05:53:01,380 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,382 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,385 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,386 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,389 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,391 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,393 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,395 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,398 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T05:53:01,400 creating build/lib/omicverse/external/cellanova 2026-03-27T05:53:01,401 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T05:53:01,404 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T05:53:01,405 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T05:53:01,408 creating build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,409 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,412 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,414 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,417 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,419 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,422 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,425 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,427 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,429 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T05:53:01,432 creating build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,433 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,436 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,438 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,440 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,442 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,445 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,448 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,450 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T05:53:01,453 creating build/lib/omicverse/external/tosica 2026-03-27T05:53:01,454 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T05:53:01,456 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T05:53:01,458 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T05:53:01,461 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T05:53:01,463 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T05:53:01,465 creating build/lib/omicverse/external/somde 2026-03-27T05:53:01,466 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T05:53:01,468 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T05:53:01,471 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T05:53:01,473 creating build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,474 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,476 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,479 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,482 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,485 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:01,488 creating build/lib/omicverse/external/cnmf 2026-03-27T05:53:01,489 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T05:53:01,493 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T05:53:01,496 creating build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,497 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,499 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,501 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,504 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,506 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,508 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,510 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,512 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,515 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,517 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,519 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,521 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T05:53:01,524 creating build/lib/omicverse/external/scanorama 2026-03-27T05:53:01,525 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T05:53:01,528 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T05:53:01,530 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T05:53:01,532 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,534 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,536 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,537 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,540 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,541 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T05:53:01,544 creating build/lib/omicverse/external/scMulan 2026-03-27T05:53:01,545 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T05:53:01,547 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T05:53:01,549 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T05:53:01,552 creating build/lib/omicverse/external/tape 2026-03-27T05:53:01,553 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,555 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,557 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,560 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,562 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,564 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T05:53:01,566 creating build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,567 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,569 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,571 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,573 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,575 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,577 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,578 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T05:53:01,581 creating build/lib/omicverse/external/cytotrace2 2026-03-27T05:53:01,582 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T05:53:01,584 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T05:53:01,586 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T05:53:01,588 creating build/lib/omicverse/external/VIA 2026-03-27T05:53:01,589 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,598 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,600 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,604 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,615 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,619 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,625 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T05:53:01,627 creating build/lib/omicverse/external/nocd 2026-03-27T05:53:01,628 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,630 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,632 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,634 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,636 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,638 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T05:53:01,641 creating build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,642 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,644 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,647 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,649 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,651 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,653 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:01,655 creating build/lib/omicverse/external/BINARY 2026-03-27T05:53:01,656 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T05:53:01,658 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T05:53:01,661 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T05:53:01,664 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T05:53:01,667 creating build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,668 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,673 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,678 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,684 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,688 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,694 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,700 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,706 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,713 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,720 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T05:53:01,727 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,730 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,737 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,742 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,748 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,755 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T05:53:01,972 creating build/lib/omicverse/external/datacollect 2026-03-27T05:53:01,974 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T05:53:01,980 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T05:53:01,984 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T05:53:01,989 creating build/lib/omicverse/external/starfysh 2026-03-27T05:53:01,991 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:01,995 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,000 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,005 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,010 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,014 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,018 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,023 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,028 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T05:53:02,033 creating build/lib/omicverse/external/topact 2026-03-27T05:53:02,035 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,039 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,042 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,045 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,050 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,056 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,060 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,064 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T05:53:02,068 creating build/lib/omicverse/external/bulk2single 2026-03-27T05:53:02,070 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T05:53:02,074 creating build/lib/omicverse/external/PROST 2026-03-27T05:53:02,076 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,078 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,082 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,085 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,087 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,091 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,094 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T05:53:02,097 creating build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,099 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,101 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,104 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,106 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,110 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,114 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,116 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,118 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,121 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,124 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,126 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,129 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,132 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,135 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,137 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,140 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,143 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,146 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,148 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,151 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,154 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T05:53:02,157 creating build/lib/omicverse/external/mofapy2 2026-03-27T05:53:02,159 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T05:53:02,162 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T05:53:02,164 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T05:53:02,168 creating build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,169 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,172 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,174 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,177 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,179 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,182 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,184 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,186 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,188 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,191 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,194 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,196 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,198 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,212 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,214 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,216 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,219 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,221 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,224 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,225 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,227 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,229 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-03-27T05:53:02,232 creating build/lib/omicverse/external/flowsig 2026-03-27T05:53:02,233 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T05:53:02,235 creating build/lib/omicverse/external/STT 2026-03-27T05:53:02,236 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T05:53:02,239 creating build/lib/omicverse/external/commot 2026-03-27T05:53:02,240 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T05:53:02,243 creating build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,244 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,246 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,249 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,252 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,255 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,258 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,260 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,262 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,265 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T05:53:02,268 creating build/lib/omicverse/external/scdiffusion 2026-03-27T05:53:02,269 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T05:53:02,272 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T05:53:02,274 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T05:53:02,276 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T05:53:02,279 creating build/lib/omicverse/external/palantir 2026-03-27T05:53:02,280 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,283 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,285 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,288 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,291 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,294 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,296 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,298 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,301 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,305 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,306 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T05:53:02,309 creating build/lib/omicverse/external/CAST 2026-03-27T05:53:02,310 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,317 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,319 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,322 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,324 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,327 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,328 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T05:53:02,332 creating build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,333 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,335 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,337 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,339 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,341 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,343 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T05:53:02,345 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,346 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,349 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,356 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,358 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,360 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T05:53:02,363 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,364 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,366 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,368 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,370 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,372 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,375 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,377 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,379 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T05:53:02,381 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T05:53:02,382 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T05:53:02,385 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T05:53:02,387 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T05:53:02,389 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:02,390 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:02,392 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:02,394 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:02,395 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:02,397 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:02,399 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:02,402 creating build/lib/omicverse/external/space/cell2location 2026-03-27T05:53:02,403 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T05:53:02,405 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T05:53:02,408 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:02,409 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:02,411 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:02,413 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:02,414 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:02,416 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:02,418 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:02,420 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:02,424 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T05:53:02,425 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T05:53:02,428 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T05:53:02,430 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T05:53:02,432 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,434 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,436 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,439 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,441 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,444 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:02,446 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,447 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,450 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,452 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,455 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,457 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:02,460 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T05:53:02,460 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T05:53:02,463 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T05:53:02,465 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T05:53:02,467 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,468 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,470 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,472 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,475 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,477 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,480 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,482 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,484 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T05:53:02,486 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:02,487 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:02,489 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:02,492 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:02,494 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,495 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,497 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,500 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,502 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,504 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:02,506 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:02,508 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:02,510 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:02,512 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:02,515 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:02,515 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:02,518 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:02,521 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:02,523 creating build/lib/omicverse/external/spaco/external 2026-03-27T05:53:02,524 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T05:53:02,526 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T05:53:02,528 creating build/lib/omicverse/external/scMulan/model 2026-03-27T05:53:02,529 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T05:53:02,532 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T05:53:02,534 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T05:53:02,535 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T05:53:02,538 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T05:53:02,542 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:02,543 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:02,546 creating build/lib/omicverse/external/nocd/nn 2026-03-27T05:53:02,547 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T05:53:02,549 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T05:53:02,551 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T05:53:02,553 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T05:53:02,555 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T05:53:02,556 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T05:53:02,558 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T05:53:02,560 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T05:53:02,563 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,564 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,566 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,569 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,571 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,574 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,576 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,579 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,581 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,584 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,586 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,588 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,591 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,593 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,595 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,598 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,600 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,602 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,605 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,607 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,610 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,612 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,614 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T05:53:02,618 creating build/lib/omicverse/external/datacollect/config 2026-03-27T05:53:02,618 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T05:53:02,621 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T05:53:02,623 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,624 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,626 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,628 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,631 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,633 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,636 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T05:53:02,639 creating build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,640 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,643 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,645 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,648 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,650 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,652 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,654 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,657 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,659 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,661 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,664 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,666 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,668 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,671 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,673 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,675 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,677 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,679 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,682 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,684 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,687 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,690 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,692 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,694 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,697 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,700 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,702 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,704 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,707 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,709 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,712 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,716 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,722 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,725 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T05:53:02,727 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,728 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,730 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,733 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,735 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,737 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,739 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T05:53:02,742 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,743 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,745 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,747 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,749 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,752 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,754 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,756 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:02,758 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:02,759 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:02,761 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:02,764 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:02,766 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:02,768 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,769 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,772 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,774 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,776 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,779 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,781 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,783 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,786 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,788 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:02,791 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,792 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,794 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,796 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,799 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,801 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,803 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,805 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,808 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:02,810 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,811 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,814 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,816 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,818 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,820 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:02,823 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,824 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,826 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,829 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,831 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,834 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,836 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,838 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,857 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,860 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,864 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:02,867 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,868 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,870 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,872 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,874 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,876 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,878 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,880 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,884 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,886 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,890 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,892 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,894 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:02,898 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T05:53:02,899 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T05:53:02,902 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T05:53:02,905 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T05:53:02,908 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,909 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,912 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,914 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,917 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,919 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T05:53:02,922 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T05:53:02,923 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T05:53:02,927 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T05:53:02,930 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T05:53:02,935 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,936 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,938 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,942 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,945 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,948 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,952 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,955 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,958 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T05:53:02,961 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,962 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,964 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,968 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,970 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,974 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T05:53:02,977 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T05:53:02,978 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T05:53:02,982 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T05:53:02,984 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,985 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,988 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,990 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,993 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,995 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,997 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T05:53:02,999 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T05:53:03,000 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T05:53:03,003 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T05:53:03,006 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,007 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,009 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,011 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,014 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,016 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,018 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,021 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,024 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,026 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,028 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,031 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,033 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,035 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,037 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,040 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,042 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,044 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,046 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:03,049 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,050 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,052 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,054 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,056 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,058 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,060 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,062 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,064 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,066 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,069 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,071 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:03,074 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T05:53:03,075 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T05:53:03,078 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T05:53:03,081 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T05:53:03,083 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T05:53:03,085 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T05:53:03,086 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T05:53:03,088 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T05:53:03,090 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T05:53:03,091 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T05:53:03,094 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T05:53:03,096 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,097 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,099 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,102 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,104 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,106 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,108 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:03,111 creating build/lib/omicverse/external/STT/pl 2026-03-27T05:53:03,112 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T05:53:03,114 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T05:53:03,117 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T05:53:03,119 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T05:53:03,121 creating build/lib/omicverse/external/STT/tl 2026-03-27T05:53:03,122 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T05:53:03,124 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T05:53:03,127 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T05:53:03,128 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T05:53:03,131 creating build/lib/omicverse/external/commot/tools 2026-03-27T05:53:03,132 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T05:53:03,135 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T05:53:03,138 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T05:53:03,141 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,142 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,145 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,147 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,149 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,152 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:03,154 creating build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,155 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,158 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,160 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,162 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,164 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T05:53:03,166 creating build/lib/omicverse/external/commot/plotting 2026-03-27T05:53:03,167 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T05:53:03,170 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T05:53:03,172 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T05:53:03,175 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T05:53:03,176 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T05:53:03,179 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T05:53:03,182 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T05:53:03,185 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:03,186 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:03,188 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T05:53:03,189 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T05:53:03,192 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T05:53:03,194 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T05:53:03,196 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,197 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,199 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,201 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,203 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,206 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,208 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,210 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,212 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,215 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,217 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,218 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,221 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,223 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,226 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,228 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,230 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,232 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,234 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:03,237 creating build/lib/omicverse/external/CAST/model 2026-03-27T05:53:03,238 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T05:53:03,240 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T05:53:03,242 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T05:53:03,244 creating build/lib/omicverse/external/single/arboreto 2026-03-27T05:53:03,246 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T05:53:03,248 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T05:53:03,251 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T05:53:03,252 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T05:53:03,254 creating build/lib/omicverse/io/bulk 2026-03-27T05:53:03,255 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T05:53:03,257 creating build/lib/omicverse/io/spatial 2026-03-27T05:53:03,258 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T05:53:03,260 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T05:53:03,263 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T05:53:03,266 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T05:53:03,268 creating build/lib/omicverse/io/general 2026-03-27T05:53:03,269 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T05:53:03,271 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T05:53:03,273 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T05:53:03,275 creating build/lib/omicverse/io/single 2026-03-27T05:53:03,276 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T05:53:03,278 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T05:53:03,280 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T05:53:03,283 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T05:53:03,285 creating build/lib/omicverse/utils/harness 2026-03-27T05:53:03,286 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,288 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,290 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,293 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,295 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,298 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,300 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T05:53:03,302 creating build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,303 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,306 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,309 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,312 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,314 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,317 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,318 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,321 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,323 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:03,325 creating build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,326 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,329 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,332 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,334 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,337 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,340 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,343 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,346 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,349 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,352 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,355 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,358 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,360 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T05:53:03,364 creating build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,365 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,368 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,370 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,373 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,375 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,378 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,381 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,383 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,386 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,390 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,393 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,396 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,399 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,403 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,406 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,408 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,411 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,413 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,416 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,419 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,424 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,427 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T05:53:03,429 creating build/lib/omicverse/single/templates 2026-03-27T05:53:03,431 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T05:53:03,433 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T05:53:03,437 running egg_info 2026-03-27T05:53:03,451 writing omicverse.egg-info/PKG-INFO 2026-03-27T05:53:03,469 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T05:53:03,471 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T05:53:03,481 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T05:53:03,482 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T05:53:03,673 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T05:53:03,757 reading manifest template 'MANIFEST.in' 2026-03-27T05:53:04,736 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T05:53:06,852 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T05:53:07,293 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T05:53:12,300 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T05:53:12,748 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T05:53:13,173 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T05:53:13,869 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T05:53:14,407 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T05:53:14,961 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T05:53:15,564 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T05:53:15,568 no previously-included directories found matching '.git' 2026-03-27T05:53:15,571 no previously-included directories found matching '.github' 2026-03-27T05:53:15,575 no previously-included directories found matching '.claude' 2026-03-27T05:53:15,578 no previously-included directories found matching '.pytest_cache' 2026-03-27T05:53:15,580 no previously-included directories found matching '.ruff_cache' 2026-03-27T05:53:15,583 no previously-included directories found matching '.vscode' 2026-03-27T05:53:15,586 no previously-included directories found matching 'docs' 2026-03-27T05:53:15,589 no previously-included directories found matching 'tests' 2026-03-27T05:53:15,592 no previously-included directories found matching 'OvIntelligence' 2026-03-27T05:53:15,595 no previously-included directories found matching 'READMEM' 2026-03-27T05:53:15,598 no previously-included directories found matching 'omicverse_guide' 2026-03-27T05:53:15,601 no previously-included directories found matching 'omicverse_web' 2026-03-27T05:53:15,604 no previously-included directories found matching 'tmp' 2026-03-27T05:53:15,607 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T05:53:15,610 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T05:53:15,616 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T05:53:15,624 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T05:53:15,630 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T05:53:15,630 adding license file 'LICENSE' 2026-03-27T05:53:15,701 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T05:53:15,832 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T05:53:15,835 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T05:53:15,837 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T05:53:15,839 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T05:53:15,842 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T05:53:15,844 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T05:53:15,846 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T05:53:15,852 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T05:53:15,854 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T05:53:15,930 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T05:53:15,933 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:15,938 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:15,941 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:15,944 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T05:53:15,946 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T05:53:15,948 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T05:53:15,950 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:15,972 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:15,988 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T05:53:15,990 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T05:53:15,993 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T05:53:15,995 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T05:53:15,998 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T05:53:16,000 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:16,426 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:16,451 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,452 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,455 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,458 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,461 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,464 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,467 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,469 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,472 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,475 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,478 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,480 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,483 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T05:53:16,486 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:16,491 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:16,492 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:16,587 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:16,592 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:16,598 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:16,599 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:16,607 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:16,615 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:16,624 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:16,625 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:16,643 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:16,660 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:16,677 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:16,679 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:16,683 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:16,687 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:16,688 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:16,693 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:16,697 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:16,702 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:16,705 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:16,708 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:16,711 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T05:53:16,714 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T05:53:16,717 creating build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,718 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,722 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,725 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,738 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,759 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T05:53:16,776 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T05:53:16,779 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T05:53:16,781 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T05:53:16,784 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T05:53:16,787 creating build/lib/omicverse/single/templates/img 2026-03-27T05:53:16,788 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T05:53:16,791 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T05:53:16,794 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T05:53:16,798 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T05:53:16,902 installing to build/bdist.linux-armv7l/wheel 2026-03-27T05:53:16,903 running install 2026-03-27T05:53:16,926 running install_lib 2026-03-27T05:53:16,933 creating build/bdist.linux-armv7l/wheel 2026-03-27T05:53:16,936 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T05:53:16,938 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T05:53:16,939 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T05:53:16,943 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T05:53:16,944 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,947 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,950 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,953 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,955 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,959 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,961 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,963 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,966 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,968 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,971 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,974 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,975 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,978 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,980 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,983 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,987 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T05:53:16,988 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T05:53:16,990 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T05:53:16,993 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T05:53:16,995 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:16,998 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,001 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,003 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,005 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,007 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,009 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T05:53:17,012 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T05:53:17,013 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,016 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,018 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,022 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,025 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,027 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,029 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,031 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,034 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,037 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,040 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,043 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,044 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,047 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T05:53:17,050 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T05:53:17,051 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,055 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T05:53:17,056 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,059 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,062 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,065 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,066 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,069 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,071 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,073 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,076 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,078 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,080 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T05:53:17,082 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,085 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,088 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,090 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,093 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,095 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,098 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,101 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,103 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T05:53:17,105 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,109 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,113 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,117 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T05:53:17,119 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T05:53:17,120 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T05:53:17,123 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T05:53:17,126 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,127 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,130 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,132 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,134 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,137 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T05:53:17,140 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T05:53:17,141 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T05:53:17,144 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T05:53:17,146 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,148 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,150 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,153 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,156 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,159 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T05:53:17,161 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T05:53:17,163 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T05:53:17,165 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T05:53:17,168 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T05:53:17,170 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T05:53:17,172 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T05:53:17,175 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T05:53:17,178 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T05:53:17,179 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T05:53:17,181 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T05:53:17,184 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T05:53:17,187 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T05:53:17,188 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T05:53:17,191 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T05:53:17,193 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T05:53:17,195 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T05:53:17,197 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,198 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,201 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,203 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,205 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,207 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,210 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T05:53:17,212 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T05:53:17,213 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T05:53:17,215 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T05:53:17,217 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T05:53:17,219 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T05:53:17,221 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T05:53:17,222 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,225 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,227 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,229 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,236 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,239 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T05:53:17,240 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T05:53:17,243 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,244 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,246 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,249 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,251 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,253 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,255 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,257 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T05:53:17,259 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,261 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,263 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T05:53:17,266 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T05:53:17,267 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,269 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T05:53:17,270 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T05:53:17,273 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T05:53:17,275 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,277 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,279 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,281 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T05:53:17,282 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T05:53:17,285 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T05:53:17,286 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T05:53:17,288 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T05:53:17,290 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T05:53:17,292 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T05:53:17,294 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T05:53:17,296 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T05:53:17,297 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T05:53:17,300 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T05:53:17,302 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T05:53:17,304 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,307 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T05:53:17,308 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T05:53:17,311 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T05:53:17,313 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T05:53:17,314 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T05:53:17,316 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,320 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,322 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,328 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T05:53:17,330 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T05:53:17,331 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,335 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,337 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,339 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,341 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,344 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T05:53:17,346 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,348 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T05:53:17,349 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T05:53:17,352 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T05:53:17,354 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T05:53:17,356 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,358 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,360 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,362 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,364 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,366 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,369 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,371 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T05:53:17,374 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:17,375 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:17,378 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:17,399 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:17,414 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T05:53:17,417 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T05:53:17,419 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T05:53:17,421 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T05:53:17,423 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,426 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,428 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T05:53:17,430 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,433 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T05:53:17,435 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T05:53:17,437 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T05:53:17,440 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T05:53:17,442 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,445 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T05:53:17,447 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T05:53:17,448 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T05:53:17,451 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T05:53:17,452 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T05:53:17,454 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T05:53:17,456 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,460 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T05:53:17,461 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,464 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,466 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,469 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,471 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,474 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,476 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T05:53:17,478 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,480 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,482 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,484 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,486 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T05:53:17,488 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,490 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T05:53:17,492 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T05:53:17,493 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,496 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,515 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,518 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,520 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,522 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,524 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,527 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,529 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,531 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,534 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T05:53:17,535 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T05:53:17,537 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T05:53:17,540 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T05:53:17,541 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,544 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,547 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,552 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,557 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,560 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,562 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,565 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,568 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,570 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,573 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,576 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,578 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,580 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,582 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,585 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,588 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,590 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,594 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,596 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T05:53:17,599 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:17,602 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T05:53:17,603 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T05:53:17,605 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T05:53:17,607 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T05:53:17,609 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:17,613 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T05:53:17,614 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,616 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,618 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,621 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T05:53:17,622 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T05:53:17,624 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T05:53:17,626 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,628 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,630 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,632 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,635 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,638 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,640 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,642 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,645 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,646 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,649 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T05:53:17,650 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,652 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,654 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,656 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,658 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,660 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,661 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T05:53:17,663 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T05:53:17,664 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T05:53:17,666 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T05:53:17,668 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T05:53:17,670 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,672 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,675 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T05:53:17,676 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,679 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,681 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,684 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,687 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,691 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,694 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T05:53:17,695 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,697 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,700 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T05:53:17,703 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T05:53:17,704 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T05:53:17,706 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T05:53:17,709 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T05:53:17,710 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,712 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,714 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,716 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,718 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,720 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,723 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,725 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T05:53:17,727 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T05:53:17,729 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T05:53:17,732 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T05:53:17,734 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T05:53:17,735 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,737 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,740 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,742 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,745 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,747 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,749 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,751 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,753 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T05:53:17,756 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T05:53:17,757 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,758 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,761 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,763 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,765 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,767 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,769 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,771 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,773 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,775 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T05:53:17,777 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:17,779 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:17,782 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:17,785 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T05:53:17,786 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,788 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,792 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T05:53:17,793 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T05:53:17,795 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T05:53:17,797 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T05:53:17,799 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T05:53:17,801 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T05:53:17,802 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,805 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,806 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,809 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T05:53:17,810 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,813 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,815 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,816 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,818 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,821 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,823 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,825 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,827 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,829 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,832 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,834 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T05:53:17,836 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T05:53:17,838 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T05:53:17,839 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,842 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,844 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,846 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,849 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,852 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T05:53:17,853 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T05:53:17,856 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T05:53:17,858 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T05:53:17,861 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T05:53:17,863 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T05:53:17,864 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,866 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,869 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,871 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,874 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,875 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,878 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,880 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T05:53:17,883 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T05:53:17,885 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T05:53:17,887 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T05:53:17,888 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,890 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,892 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,894 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,896 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:17,897 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:17,899 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T05:53:17,901 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:17,902 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:17,904 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:17,906 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T05:53:17,908 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,910 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,913 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,915 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T05:53:17,917 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T05:53:17,918 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T05:53:17,921 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T05:53:17,922 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T05:53:17,924 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T05:53:17,926 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T05:53:17,928 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T05:53:17,930 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T05:53:17,931 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,934 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,936 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,938 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,941 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,944 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,946 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,949 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,952 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,954 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,956 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,959 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,962 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,964 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,966 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,969 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T05:53:17,972 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T05:53:17,974 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T05:53:17,976 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T05:53:17,980 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T05:53:17,983 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T05:53:17,984 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T05:53:17,988 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T05:53:17,991 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T05:53:17,994 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T05:53:17,996 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:17,998 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:18,000 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:18,003 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:18,006 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:18,009 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T05:53:18,012 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T05:53:18,014 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T05:53:18,016 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:18,017 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:18,020 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T05:53:18,023 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:18,024 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:18,027 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:18,030 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:18,032 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T05:53:18,035 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T05:53:18,036 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T05:53:18,039 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T05:53:18,041 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T05:53:18,043 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,044 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,047 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,049 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,050 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,053 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T05:53:18,055 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T05:53:18,056 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,059 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:18,060 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:18,063 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:18,065 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T05:53:18,067 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,070 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,071 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,073 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,075 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,078 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,079 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T05:53:18,081 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,083 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,086 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:18,087 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:18,090 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:18,092 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T05:53:18,095 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:18,096 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:18,098 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:18,100 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T05:53:18,102 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,104 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T05:53:18,106 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T05:53:18,107 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T05:53:18,109 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T05:53:18,111 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T05:53:18,113 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,114 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,116 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,118 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,120 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,123 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,125 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,127 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,129 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T05:53:18,131 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T05:53:18,132 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T05:53:18,135 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T05:53:18,136 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,139 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,141 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,143 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,145 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,147 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,149 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,151 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,154 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,155 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,157 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,160 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,161 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,164 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,166 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T05:53:18,169 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T05:53:18,172 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T05:53:18,176 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T05:53:18,178 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T05:53:18,179 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,182 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,184 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,186 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,189 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,191 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,193 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T05:53:18,196 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T05:53:18,197 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,200 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,203 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,206 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,208 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,210 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,213 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,216 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,218 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,221 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,223 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T05:53:18,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T05:53:18,227 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T05:53:18,230 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T05:53:18,232 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T05:53:18,235 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T05:53:18,238 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T05:53:18,239 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T05:53:18,242 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T05:53:18,245 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T05:53:18,247 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T05:53:18,249 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T05:53:18,251 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T05:53:18,254 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T05:53:18,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-03-27T05:53:18,258 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T05:53:18,261 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T05:53:18,264 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T05:53:18,266 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T05:53:18,268 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T05:53:18,271 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T05:53:18,272 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T05:53:18,275 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T05:53:18,278 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T05:53:18,281 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T05:53:18,283 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T05:53:18,286 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T05:53:18,287 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,290 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,292 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,295 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,297 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,299 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,302 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,304 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,306 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,308 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,310 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,313 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,316 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T05:53:18,318 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T05:53:18,320 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,322 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,325 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,327 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T05:53:18,329 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T05:53:18,332 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T05:53:18,334 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,336 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,339 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,341 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,344 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,346 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T05:53:18,349 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T05:53:18,350 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T05:53:18,353 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T05:53:18,355 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T05:53:18,358 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T05:53:18,359 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,362 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,365 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,369 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,371 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,373 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,376 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,378 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,380 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T05:53:18,382 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T05:53:18,383 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,386 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,388 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,390 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,393 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,395 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,397 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,399 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T05:53:18,402 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T05:53:18,403 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T05:53:18,406 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T05:53:18,408 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T05:53:18,410 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T05:53:18,412 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T05:53:18,414 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T05:53:18,416 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T05:53:18,418 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T05:53:18,420 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T05:53:18,423 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T05:53:18,424 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,426 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,428 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,430 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,432 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,434 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T05:53:18,436 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T05:53:18,437 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T05:53:18,440 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T05:53:18,443 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T05:53:18,444 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,446 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,448 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,451 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,453 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,455 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,457 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,459 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,461 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,464 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,466 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,468 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T05:53:18,471 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T05:53:18,472 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T05:53:18,475 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T05:53:18,477 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T05:53:18,480 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T05:53:18,481 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T05:53:18,482 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T05:53:18,484 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T05:53:18,486 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T05:53:18,488 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T05:53:18,491 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T05:53:18,492 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T05:53:18,493 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T05:53:18,496 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T05:53:18,498 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T05:53:18,500 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T05:53:18,503 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T05:53:18,504 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T05:53:18,506 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T05:53:18,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T05:53:18,511 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:18,512 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:18,538 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:19,282 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T05:53:19,285 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T05:53:19,287 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T05:53:19,288 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,291 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,293 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,295 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,297 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,300 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T05:53:19,302 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T05:53:19,303 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,305 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,307 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,308 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,310 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,312 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,314 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T05:53:19,316 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T05:53:19,317 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T05:53:19,319 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T05:53:19,320 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T05:53:19,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T05:53:19,327 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,332 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,334 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,340 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,345 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,348 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,353 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T05:53:19,355 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T05:53:19,356 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,359 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,361 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T05:53:19,362 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T05:53:19,364 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T05:53:19,366 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T05:53:19,368 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T05:53:19,370 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T05:53:19,371 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T05:53:19,373 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T05:53:19,375 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T05:53:19,377 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,379 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,381 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,382 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T05:53:19,385 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T05:53:19,386 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,388 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,390 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,393 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,395 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,396 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,398 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T05:53:19,400 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T05:53:19,401 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T05:53:19,403 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T05:53:19,405 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T05:53:19,408 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T05:53:19,410 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T05:53:19,411 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,414 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,416 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,418 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,421 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,424 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,426 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,428 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,430 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,433 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T05:53:19,435 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,436 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,439 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,440 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,442 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,444 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T05:53:19,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T05:53:19,447 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T05:53:19,451 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T05:53:19,452 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,454 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,456 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,459 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,461 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,463 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,466 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,468 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,470 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,473 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,475 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,478 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,481 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,484 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,486 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,489 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,491 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,493 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,495 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,497 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,500 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,502 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T05:53:19,505 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T05:53:19,506 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,508 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,510 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,513 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,516 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,519 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,521 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,524 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,526 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,528 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,531 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,534 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T05:53:19,536 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T05:53:19,539 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T05:53:19,540 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T05:53:19,542 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T05:53:19,544 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T05:53:19,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T05:53:19,549 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,551 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,554 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,557 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,559 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,562 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T05:53:19,566 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T05:53:19,567 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,570 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,573 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,592 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,595 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,598 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,613 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,617 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,620 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,623 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,627 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,631 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,632 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,635 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,638 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,640 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,643 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,646 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T05:53:19,648 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,651 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,654 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,656 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,659 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,662 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,664 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,667 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,670 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,673 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T05:53:19,676 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,679 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,681 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,684 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T05:53:19,686 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T05:53:19,688 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T05:53:19,691 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T05:53:19,694 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T05:53:19,697 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,700 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,704 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,705 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,708 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,711 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,715 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,717 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,720 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,723 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,726 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,728 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T05:53:19,730 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,733 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,736 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,739 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,742 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,745 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,747 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,749 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,752 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,754 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,756 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,759 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,761 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,764 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,767 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,769 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,771 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,774 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,777 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,779 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,782 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,785 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,787 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,789 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T05:53:19,791 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T05:53:19,794 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T05:53:19,796 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T05:53:19,799 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T05:53:19,800 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,803 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,806 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,809 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,812 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,814 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,817 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,821 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,825 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T05:53:19,827 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T05:53:19,828 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,830 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,832 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,834 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,836 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,840 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,843 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,844 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T05:53:19,847 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T05:53:19,848 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,849 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,852 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,854 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,856 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,858 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T05:53:19,861 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,862 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,864 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,867 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,870 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,878 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,881 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,884 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,886 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,890 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,893 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,898 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T05:53:19,900 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:19,902 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:19,905 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:19,907 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:19,910 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:19,913 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,133 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,135 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,137 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,139 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:20,140 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:20,163 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:20,365 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T05:53:20,370 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,373 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,375 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,377 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T05:53:20,380 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T05:53:20,382 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T05:53:20,383 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,386 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,388 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,390 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,393 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,396 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,398 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T05:53:20,401 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T05:53:20,402 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,404 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,407 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,409 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,410 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,413 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T05:53:20,414 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T05:53:20,416 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T05:53:20,419 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T05:53:20,420 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,422 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,424 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,426 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,429 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T05:53:20,430 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T05:53:20,432 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T05:53:20,434 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T05:53:20,436 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T05:53:20,438 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T05:53:20,440 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,442 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,444 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T05:53:20,449 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T05:53:20,452 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T05:53:20,455 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T05:53:20,457 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,461 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,463 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,465 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,470 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T05:53:20,472 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,474 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,480 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,483 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,486 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,492 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,495 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,499 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T05:53:20,501 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,504 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,506 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,508 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,512 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T05:53:20,514 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T05:53:20,516 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T05:53:20,518 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T05:53:20,521 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T05:53:20,525 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,526 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,529 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,532 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,535 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,538 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,541 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,544 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,547 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,550 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,552 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,554 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,557 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,558 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,561 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,564 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,565 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,568 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,570 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T05:53:20,572 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,573 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,575 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,577 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,579 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,581 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,583 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,585 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,587 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,589 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,592 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,594 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T05:53:20,596 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T05:53:20,597 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T05:53:20,599 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T05:53:20,602 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T05:53:20,603 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:20,604 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:20,613 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:20,620 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:20,621 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:20,638 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:20,656 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T05:53:20,673 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T05:53:20,682 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T05:53:20,685 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T05:53:20,687 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,688 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,691 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,694 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,696 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,698 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,700 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T05:53:20,703 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T05:53:20,704 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T05:53:20,706 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T05:53:20,708 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T05:53:20,709 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T05:53:20,711 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T05:53:20,714 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-03-27T05:53:20,715 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,717 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,719 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,721 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,723 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,725 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,728 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,730 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,732 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,735 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,738 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,739 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,741 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,743 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,745 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,747 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,750 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,752 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,754 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,756 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,758 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,760 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T05:53:20,763 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T05:53:20,764 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T05:53:20,765 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T05:53:20,768 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T05:53:20,771 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T05:53:20,773 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T05:53:20,775 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T05:53:20,777 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T05:53:20,780 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T05:53:20,782 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T05:53:20,783 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T05:53:20,786 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T05:53:20,788 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,789 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,792 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,794 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,797 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,798 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,801 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T05:53:20,802 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T05:53:20,805 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T05:53:20,806 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T05:53:20,807 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T05:53:20,810 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T05:53:20,813 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T05:53:20,815 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T05:53:20,817 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T05:53:20,818 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T05:53:20,820 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T05:53:20,823 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T05:53:20,825 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T05:53:20,826 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T05:53:20,829 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T05:53:20,830 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T05:53:20,831 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T05:53:20,835 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T05:53:20,838 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T05:53:20,840 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,841 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,844 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,846 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,848 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,850 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T05:53:20,853 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T05:53:20,854 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T05:53:20,856 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T05:53:20,859 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T05:53:20,861 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T05:53:20,862 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T05:53:20,865 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T05:53:20,866 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T05:53:20,869 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T05:53:20,871 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T05:53:20,874 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T05:53:20,876 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T05:53:20,877 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T05:53:20,879 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:20,880 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:20,885 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:20,888 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T05:53:20,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:20,895 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:20,899 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T05:53:20,902 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T05:53:20,904 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T05:53:20,906 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T05:53:20,908 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T05:53:20,911 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T05:53:20,912 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,914 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,917 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,919 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,922 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T05:53:20,923 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T05:53:20,926 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T05:53:20,928 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T05:53:20,931 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T05:53:20,933 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T05:53:20,935 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,938 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,941 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,944 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,946 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T05:53:20,948 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T05:53:20,950 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T05:53:20,952 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T05:53:20,954 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T05:53:20,956 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T05:53:20,957 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T05:53:20,960 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T05:53:20,962 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T05:53:20,964 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,965 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,967 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,970 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,972 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,975 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,977 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,979 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,981 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,984 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,986 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,988 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,990 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,992 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,994 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,996 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:20,998 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:21,001 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:21,003 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T05:53:21,005 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T05:53:21,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T05:53:21,009 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,012 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,015 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,017 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,020 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,024 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,025 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,027 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,029 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,032 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,034 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T05:53:21,036 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T05:53:21,037 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,040 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,043 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T05:53:21,044 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T05:53:21,046 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T05:53:21,048 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T05:53:21,050 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,053 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,055 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,058 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,060 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T05:53:21,063 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T05:53:21,064 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T05:53:21,066 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T05:53:21,068 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T05:53:21,070 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T05:53:21,072 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T05:53:21,074 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T05:53:21,075 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,078 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,080 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,083 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,085 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,087 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T05:53:21,089 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T05:53:21,092 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T05:53:21,093 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T05:53:21,096 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T05:53:21,103 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T05:53:21,105 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T05:53:21,106 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T05:53:21,109 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T05:53:21,111 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T05:53:21,112 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T05:53:21,114 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T05:53:21,115 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T05:53:21,118 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T05:53:21,120 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T05:53:21,123 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T05:53:21,125 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T05:53:21,126 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T05:53:21,128 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T05:53:21,130 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T05:53:21,132 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T05:53:21,133 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T05:53:21,135 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T05:53:21,137 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T05:53:21,139 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T05:53:21,141 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T05:53:21,143 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:21,145 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T05:53:21,146 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,148 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,151 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,154 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,156 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,159 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,161 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,163 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,166 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,168 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T05:53:21,170 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T05:53:21,171 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T05:53:21,174 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T05:53:21,176 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T05:53:21,179 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T05:53:21,180 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,183 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,194 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,196 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,198 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,201 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,202 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,206 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,209 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,212 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,214 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,217 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,219 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,221 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,224 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,227 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T05:53:21,228 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,230 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,232 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,234 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,236 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,239 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,241 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T05:53:21,243 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,245 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T05:53:21,246 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,249 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,251 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,254 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,256 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,258 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,260 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,262 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,265 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,267 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T05:53:21,269 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,271 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,273 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,276 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,279 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,281 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,283 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,286 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,287 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,290 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,292 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,295 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,299 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,302 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,305 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,308 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T05:53:21,309 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,312 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,314 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,317 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,319 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,322 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,325 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,327 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,329 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,332 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,334 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,336 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,339 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T05:53:21,341 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,344 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,346 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,349 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T05:53:21,352 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T05:53:21,353 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,356 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,358 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,360 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,362 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,364 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,367 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,369 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,372 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,374 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,376 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,378 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,381 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,384 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,386 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,388 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,390 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,393 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,395 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,398 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,401 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,404 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T05:53:21,406 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T05:53:21,408 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T05:53:21,410 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T05:53:21,415 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T05:53:21,418 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T05:53:21,419 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T05:53:21,431 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T05:53:21,441 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T05:53:21,443 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T05:53:21,459 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T05:53:21,461 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T05:53:21,543 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T05:53:21,546 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T05:53:21,547 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,549 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,552 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,554 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,557 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,560 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,562 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,565 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,567 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,570 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,573 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,575 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,578 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,581 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,584 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,587 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,589 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,592 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,595 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,600 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,603 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,606 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,608 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,610 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,613 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,616 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,619 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,622 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,624 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,626 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,629 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,632 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,635 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,637 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,640 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T05:53:21,641 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,643 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,645 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,648 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T05:53:21,649 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T05:53:21,651 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T05:53:21,654 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T05:53:21,657 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T05:53:21,659 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,662 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,664 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T05:53:21,666 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,668 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,674 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,677 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,679 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,681 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,684 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,686 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,689 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,691 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,693 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T05:53:21,696 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T05:53:21,699 running install_egg_info 2026-03-27T05:53:21,704 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.1.0-py3.11.egg-info 2026-03-27T05:53:21,719 running install_scripts 2026-03-27T05:53:21,732 creating build/bdist.linux-armv7l/wheel/omicverse-2.1.0.dist-info/WHEEL 2026-03-27T05:53:21,735 creating '/tmp/pip-wheel-5ms4z7fa/.tmp-nsv4czvu/omicverse-2.1.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T05:53:21,739 adding 'omicverse/__init__.py' 2026-03-27T05:53:21,740 adding 'omicverse/_lazy_loader.py' 2026-03-27T05:53:21,742 adding 'omicverse/_monitor.py' 2026-03-27T05:53:21,748 adding 'omicverse/_registry.py' 2026-03-27T05:53:21,754 adding 'omicverse/_settings.py' 2026-03-27T05:53:21,757 adding 'omicverse/claw.py' 2026-03-27T05:53:21,759 adding 'omicverse/cli.py' 2026-03-27T05:53:21,761 adding 'omicverse/agent/__init__.py' 2026-03-27T05:53:21,763 adding 'omicverse/alignment/STAR.py' 2026-03-27T05:53:21,765 adding 'omicverse/alignment/__init__.py' 2026-03-27T05:53:21,767 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T05:53:21,768 adding 'omicverse/alignment/fastp.py' 2026-03-27T05:53:21,771 adding 'omicverse/alignment/featureCount.py' 2026-03-27T05:53:21,772 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T05:53:21,776 adding 'omicverse/alignment/kb_api.py' 2026-03-27T05:53:21,778 adding 'omicverse/alignment/pipeline.py' 2026-03-27T05:53:21,779 adding 'omicverse/alignment/prefetch.py' 2026-03-27T05:53:21,781 adding 'omicverse/biocontext/__init__.py' 2026-03-27T05:53:21,783 adding 'omicverse/biocontext/_client.py' 2026-03-27T05:53:21,786 adding 'omicverse/biocontext/_tools.py' 2026-03-27T05:53:21,790 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T05:53:21,794 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T05:53:21,797 adding 'omicverse/bulk/_Gene_module.py' 2026-03-27T05:53:21,798 adding 'omicverse/bulk/__init__.py' 2026-03-27T05:53:21,840 adding 'omicverse/bulk/_chm13.py' 2026-03-27T05:53:21,845 adding 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2026-03-27T05:53:30,558 Stored in directory: /tmp/pip-ephem-wheel-cache-psrg1syw/wheels/12/5b/95/8556da2e74712a1f67bc98248d9f5b4c8c64d6bdf5a01eabc0 2026-03-27T05:53:30,637 Successfully built omicverse 2026-03-27T05:53:30,944 Removed build tracker: '/tmp/pip-build-tracker-5wsv2gze'