2026-03-27T06:25:25,560 Created temporary directory: /tmp/pip-ephem-wheel-cache-spxivdo_ 2026-03-27T06:25:25,562 Created temporary directory: /tmp/pip-build-tracker-w1y6oksj 2026-03-27T06:25:25,562 Initialized build tracking at /tmp/pip-build-tracker-w1y6oksj 2026-03-27T06:25:25,563 Created build tracker: /tmp/pip-build-tracker-w1y6oksj 2026-03-27T06:25:25,563 Entered build tracker: /tmp/pip-build-tracker-w1y6oksj 2026-03-27T06:25:25,564 Created temporary directory: /tmp/pip-wheel-9lffpxad 2026-03-27T06:25:25,567 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T06:25:25,570 Created temporary directory: /tmp/pip-ephem-wheel-cache-2mry_4ht 2026-03-27T06:25:25,591 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T06:25:25,595 2 location(s) to search for versions of acellera-htmd: 2026-03-27T06:25:25,595 * https://pypi.org/simple/acellera-htmd/ 2026-03-27T06:25:25,595 * https://www.piwheels.org/simple/acellera-htmd/ 2026-03-27T06:25:25,595 Fetching project page and analyzing links: https://pypi.org/simple/acellera-htmd/ 2026-03-27T06:25:25,596 Getting page https://pypi.org/simple/acellera-htmd/ 2026-03-27T06:25:25,598 Found index url https://pypi.org/simple 2026-03-27T06:25:25,822 Fetched page https://pypi.org/simple/acellera-htmd/ as application/vnd.pypi.simple.v1+json 2026-03-27T06:25:25,824 Found link https://files.pythonhosted.org/packages/7b/b5/296a5fe7573797fca6eb9e1820feaceb3e078cbd4905156960e9ba779fac/acellera-htmd-1.23.2.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.2 2026-03-27T06:25:25,825 Found link https://files.pythonhosted.org/packages/63/8e/389b32ca6a0789b30ad1483dbfeeb46916450ba1a1f6c953966e9903bbbb/acellera-htmd-1.23.4.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.4 2026-03-27T06:25:25,825 Found link https://files.pythonhosted.org/packages/5d/56/5d7e8d3d4f979cd97a540bedf4c4edc7268388c9eb450bc4af0ce0084f1f/acellera-htmd-1.23.5.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.5 2026-03-27T06:25:25,826 Found link https://files.pythonhosted.org/packages/f2/ef/f3b5c44015b5e51757d54f7d27c4208a618f609036e8517b083034dc1ada/acellera-htmd-1.23.6.tar.gz (from https://pypi.org/simple/acellera-htmd/), version: 1.23.6 2026-03-27T06:25:25,827 Found link https://files.pythonhosted.org/packages/46/22/b042ef04a3ddbe7e160d6923657f24d261aa175be0f93243e0259c287a57/acellera_htmd-2.5.8.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.8 2026-03-27T06:25:25,828 Found link https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz (from https://pypi.org/simple/acellera-htmd/) (requires-python:>=3.10), version: 2.5.9 2026-03-27T06:25:25,829 Fetching project page and analyzing links: https://www.piwheels.org/simple/acellera-htmd/ 2026-03-27T06:25:25,830 Getting page https://www.piwheels.org/simple/acellera-htmd/ 2026-03-27T06:25:25,831 Found index url https://www.piwheels.org/simple 2026-03-27T06:25:26,000 Fetched page https://www.piwheels.org/simple/acellera-htmd/ as text/html 2026-03-27T06:25:26,002 Skipping link: No binaries permitted for acellera-htmd: https://www.piwheels.org/simple/acellera-htmd/acellera_htmd-2.5.8-py3-none-any.whl#sha256=f35d7d637d96979c3193449d0fa62cc53af299b6150e0febb9508b1a4e37072b (from https://www.piwheels.org/simple/acellera-htmd/) (requires-python:>=3.10) 2026-03-27T06:25:26,002 Skipping link: No binaries permitted for acellera-htmd: https://archive1.piwheels.org/simple/acellera-htmd/acellera_htmd-0-py3-none-any.whl#sha256=5faae28b3355ac3a599fda507325bf63fef2e93ca3508ac1e166e52d000aa905 (from https://www.piwheels.org/simple/acellera-htmd/) 2026-03-27T06:25:26,003 Skipping link: not a file: https://www.piwheels.org/simple/acellera-htmd/ 2026-03-27T06:25:26,004 Skipping link: not a file: https://pypi.org/simple/acellera-htmd/ 2026-03-27T06:25:26,026 Given no hashes to check 1 links for project 'acellera-htmd': discarding no candidates 2026-03-27T06:25:26,045 Collecting acellera-htmd==2.5.9 2026-03-27T06:25:26,048 Created temporary directory: /tmp/pip-unpack-7utq75xp 2026-03-27T06:25:26,193 Downloading acellera_htmd-2.5.9.tar.gz (4.0 MB) 2026-03-27T06:25:28,214 Added acellera-htmd==2.5.9 from https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz to build tracker '/tmp/pip-build-tracker-w1y6oksj' 2026-03-27T06:25:28,220 Created temporary directory: /tmp/pip-build-env-15h1gdmy 2026-03-27T06:25:28,224 Installing build dependencies: started 2026-03-27T06:25:28,226 Running command pip subprocess to install build dependencies 2026-03-27T06:25:29,360 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T06:25:29,775 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T06:25:29,798 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T06:25:31,586 Collecting setuptools 2026-03-27T06:25:31,736 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T06:25:32,153 Collecting setuptools-scm>=8 2026-03-27T06:25:32,170 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.3-py3-none-any.whl (20 kB) 2026-03-27T06:25:32,249 Collecting vcs-versioning>=1.0.0.dev0 2026-03-27T06:25:32,265 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.0.1-py3-none-any.whl (78 kB) 2026-03-27T06:25:32,447 Collecting packaging>=20 2026-03-27T06:25:32,480 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T06:25:35,470 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-03-27T06:25:39,195 Creating /tmp/pip-build-env-15h1gdmy/overlay/local/bin 2026-03-27T06:25:39,197 changing mode of /tmp/pip-build-env-15h1gdmy/overlay/local/bin/vcs-versioning to 755 2026-03-27T06:25:39,304 changing mode of /tmp/pip-build-env-15h1gdmy/overlay/local/bin/setuptools-scm to 755 2026-03-27T06:25:39,332 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.3 vcs-versioning-1.0.1 2026-03-27T06:25:39,614 Installing build dependencies: finished with status 'done' 2026-03-27T06:25:39,629 Getting requirements to build wheel: started 2026-03-27T06:25:39,631 Running command Getting requirements to build wheel 2026-03-27T06:25:40,465 running egg_info 2026-03-27T06:25:40,472 writing acellera_htmd.egg-info/PKG-INFO 2026-03-27T06:25:40,477 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-03-27T06:25:40,479 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-03-27T06:25:40,482 writing requirements to acellera_htmd.egg-info/requires.txt 2026-03-27T06:25:40,484 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-03-27T06:25:40,569 /tmp/pip-build-env-15h1gdmy/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-03-27T06:25:40,569 return get_active_overrides().subprocess_timeout 2026-03-27T06:25:40,576 listing git files failed - pretending there aren't any 2026-03-27T06:25:40,582 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:40,602 reading manifest template 'MANIFEST.in' 2026-03-27T06:25:40,621 no previously-included directories found matching 'htmd/data' 2026-03-27T06:25:40,622 no previously-included directories found matching '.github' 2026-03-27T06:25:40,623 no previously-included directories found matching 'doc' 2026-03-27T06:25:40,624 no previously-included directories found matching 'package' 2026-03-27T06:25:40,625 no previously-included directories found matching 'tests' 2026-03-27T06:25:40,627 no previously-included directories found matching 'tutorials' 2026-03-27T06:25:40,628 warning: no previously-included files found matching 'Makefile' 2026-03-27T06:25:40,650 adding license file 'LICENSE' 2026-03-27T06:25:40,651 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:40,753 Getting requirements to build wheel: finished with status 'done' 2026-03-27T06:25:40,756 Created temporary directory: /tmp/pip-modern-metadata-ea6v287f 2026-03-27T06:25:40,758 Preparing metadata (pyproject.toml): started 2026-03-27T06:25:40,760 Running command Preparing metadata (pyproject.toml) 2026-03-27T06:25:41,510 running dist_info 2026-03-27T06:25:41,524 creating /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info 2026-03-27T06:25:41,525 writing /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/PKG-INFO 2026-03-27T06:25:41,530 writing dependency_links to /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/dependency_links.txt 2026-03-27T06:25:41,532 writing entry points to /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/entry_points.txt 2026-03-27T06:25:41,535 writing requirements to /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/requires.txt 2026-03-27T06:25:41,536 writing top-level names to /tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/top_level.txt 2026-03-27T06:25:41,538 writing manifest file '/tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:41,612 /tmp/pip-build-env-15h1gdmy/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-03-27T06:25:41,613 return get_active_overrides().subprocess_timeout 2026-03-27T06:25:41,619 listing git files failed - pretending there aren't any 2026-03-27T06:25:41,624 reading manifest file '/tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:41,626 reading manifest template 'MANIFEST.in' 2026-03-27T06:25:41,644 no previously-included directories found matching 'htmd/data' 2026-03-27T06:25:41,645 no previously-included directories found matching '.github' 2026-03-27T06:25:41,646 no previously-included directories found matching 'doc' 2026-03-27T06:25:41,647 no previously-included directories found matching 'package' 2026-03-27T06:25:41,648 no previously-included directories found matching 'tests' 2026-03-27T06:25:41,649 no previously-included directories found matching 'tutorials' 2026-03-27T06:25:41,650 warning: no previously-included files found matching 'Makefile' 2026-03-27T06:25:41,650 adding license file 'LICENSE' 2026-03-27T06:25:41,667 writing manifest file '/tmp/pip-modern-metadata-ea6v287f/acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:41,669 creating '/tmp/pip-modern-metadata-ea6v287f/acellera_htmd-2.5.9.dist-info' 2026-03-27T06:25:41,806 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T06:25:41,810 Source in /tmp/pip-wheel-9lffpxad/acellera-htmd_5c6f63bf01484194889e235a4dc7472b has version 2.5.9, which satisfies requirement acellera-htmd==2.5.9 from https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz 2026-03-27T06:25:41,811 Removed acellera-htmd==2.5.9 from https://files.pythonhosted.org/packages/f2/d7/997750fb042860ca38439ccb15237092722f451e4db538d3ccd421c6ff56/acellera_htmd-2.5.9.tar.gz from build tracker '/tmp/pip-build-tracker-w1y6oksj' 2026-03-27T06:25:41,817 Created temporary directory: /tmp/pip-unpack-ehg94i2l 2026-03-27T06:25:41,818 Building wheels for collected packages: acellera-htmd 2026-03-27T06:25:41,822 Created temporary directory: /tmp/pip-wheel-72f30plz 2026-03-27T06:25:41,823 Destination directory: /tmp/pip-wheel-72f30plz 2026-03-27T06:25:41,825 Building wheel for acellera-htmd (pyproject.toml): started 2026-03-27T06:25:41,826 Running command Building wheel for acellera-htmd (pyproject.toml) 2026-03-27T06:25:42,571 running bdist_wheel 2026-03-27T06:25:42,595 running build 2026-03-27T06:25:42,595 running build_py 2026-03-27T06:25:42,597 creating build/lib/htmd 2026-03-27T06:25:42,599 copying htmd/metricdata.py -> build/lib/htmd 2026-03-27T06:25:42,603 copying htmd/util.py -> build/lib/htmd 2026-03-27T06:25:42,605 copying htmd/dock.py -> build/lib/htmd 2026-03-27T06:25:42,607 copying htmd/config.py -> build/lib/htmd 2026-03-27T06:25:42,609 copying htmd/home.py -> build/lib/htmd 2026-03-27T06:25:42,610 copying htmd/model.py -> build/lib/htmd 2026-03-27T06:25:42,614 copying htmd/units.py -> build/lib/htmd 2026-03-27T06:25:42,615 copying htmd/decorators.py -> build/lib/htmd 2026-03-27T06:25:42,617 copying htmd/ui.py -> build/lib/htmd 2026-03-27T06:25:42,619 copying htmd/mutualinformation.py -> build/lib/htmd 2026-03-27T06:25:42,621 copying htmd/__init__.py -> build/lib/htmd 2026-03-27T06:25:42,624 copying htmd/pathplanning.py -> build/lib/htmd 2026-03-27T06:25:42,626 copying htmd/simlist.py -> build/lib/htmd 2026-03-27T06:25:42,629 copying htmd/versionwarnings.py -> build/lib/htmd 2026-03-27T06:25:42,631 copying htmd/kinetics.py -> build/lib/htmd 2026-03-27T06:25:42,634 copying htmd/session.py -> build/lib/htmd 2026-03-27T06:25:42,636 copying htmd/metricdatagenerator.py -> build/lib/htmd 2026-03-27T06:25:42,638 copying htmd/latest.py -> build/lib/htmd 2026-03-27T06:25:42,640 copying htmd/parallelprogress.py -> build/lib/htmd 2026-03-27T06:25:42,642 copying htmd/license.py -> build/lib/htmd 2026-03-27T06:25:42,645 creating build/lib/htmd/projections 2026-03-27T06:25:42,646 copying htmd/projections/metric.py -> build/lib/htmd/projections 2026-03-27T06:25:42,648 copying htmd/projections/tica.py -> build/lib/htmd/projections 2026-03-27T06:25:42,651 copying htmd/projections/gwpca.py -> build/lib/htmd/projections 2026-03-27T06:25:42,652 copying htmd/projections/kmeanstri.py -> build/lib/htmd/projections 2026-03-27T06:25:42,654 copying htmd/projections/__init__.py -> build/lib/htmd/projections 2026-03-27T06:25:42,657 creating build/lib/htmd/adaptive 2026-03-27T06:25:42,657 copying htmd/adaptive/adaptivebandit.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,660 copying htmd/adaptive/util.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,662 copying htmd/adaptive/adaptivegoaleg.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,665 copying htmd/adaptive/adaptive.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,667 copying htmd/adaptive/adaptivegoal.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,670 copying htmd/adaptive/__init__.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,672 copying htmd/adaptive/adaptiverun.py -> build/lib/htmd/adaptive 2026-03-27T06:25:42,675 creating build/lib/htmd/membranebuilder 2026-03-27T06:25:42,676 copying htmd/membranebuilder/globalminimization.py -> build/lib/htmd/membranebuilder 2026-03-27T06:25:42,678 copying htmd/membranebuilder/build_membrane.py -> build/lib/htmd/membranebuilder 2026-03-27T06:25:42,681 copying htmd/membranebuilder/ljfluid.py -> build/lib/htmd/membranebuilder 2026-03-27T06:25:42,683 copying htmd/membranebuilder/__init__.py -> build/lib/htmd/membranebuilder 2026-03-27T06:25:42,685 copying htmd/membranebuilder/ringpenetration.py -> build/lib/htmd/membranebuilder 2026-03-27T06:25:42,688 creating build/lib/htmd/clustering 2026-03-27T06:25:42,689 copying htmd/clustering/kcenters.py -> build/lib/htmd/clustering 2026-03-27T06:25:42,691 copying htmd/clustering/regular.py -> build/lib/htmd/clustering 2026-03-27T06:25:42,693 copying htmd/clustering/__init__.py -> build/lib/htmd/clustering 2026-03-27T06:25:42,696 creating build/lib/htmd/builder 2026-03-27T06:25:42,696 copying htmd/builder/builder.py -> build/lib/htmd/builder 2026-03-27T06:25:42,699 copying htmd/builder/ionize.py -> build/lib/htmd/builder 2026-03-27T06:25:42,702 copying htmd/builder/charmm.py -> build/lib/htmd/builder 2026-03-27T06:25:42,705 copying htmd/builder/solvate.py -> build/lib/htmd/builder 2026-03-27T06:25:42,707 copying htmd/builder/amber.py -> build/lib/htmd/builder 2026-03-27T06:25:42,710 copying htmd/builder/__init__.py -> build/lib/htmd/builder 2026-03-27T06:25:42,712 copying htmd/builder/loopmodeler.py -> build/lib/htmd/builder 2026-03-27T06:25:42,714 copying htmd/builder/noncanonical.py -> build/lib/htmd/builder 2026-03-27T06:25:42,750 creating build/lib/htmd/share 2026-03-27T06:25:42,751 copying htmd/share/license-checker -> build/lib/htmd/share 2026-03-27T06:25:42,759 creating build/lib/htmd/share/membranebuilder/lipids 2026-03-27T06:25:42,760 copying htmd/share/membranebuilder/lipids/lipiddb.csv -> build/lib/htmd/share/membranebuilder/lipids 2026-03-27T06:25:42,762 creating build/lib/htmd/share/membranebuilder/lipids/chl1 2026-03-27T06:25:42,763 copying htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/lib/htmd/share/membranebuilder/lipids/chl1 2026-03-27T06:25:42,766 creating build/lib/htmd/share/membranebuilder/lipids/popc 2026-03-27T06:25:42,767 copying htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/lib/htmd/share/membranebuilder/lipids/popc 2026-03-27T06:25:42,770 creating build/lib/htmd/share/membranebuilder/lipids/pope 2026-03-27T06:25:42,771 copying htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/lib/htmd/share/membranebuilder/lipids/pope 2026-03-27T06:25:42,774 creating build/lib/htmd/share/solvate 2026-03-27T06:25:42,775 copying htmd/share/solvate/wat.pdb -> build/lib/htmd/share/solvate 2026-03-27T06:25:42,816 creating build/lib/htmd/share/builder 2026-03-27T06:25:42,817 copying htmd/share/builder/charmmlipid2amber.csv -> build/lib/htmd/share/builder 2026-03-27T06:25:42,823 copying htmd/share/builder/triala_capped.cif -> build/lib/htmd/share/builder 2026-03-27T06:25:42,825 copying htmd/share/builder/triala_capped.mmtf -> build/lib/htmd/share/builder 2026-03-27T06:25:42,827 creating build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,829 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,831 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,834 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,836 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,839 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,842 copying htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:42,844 creating build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,845 copying htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,849 copying htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,851 copying htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,854 copying htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,857 copying htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,859 copying htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,861 copying htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,864 copying htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,866 copying htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,868 copying htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,870 copying htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,872 copying htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,874 copying htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,877 copying htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,879 copying htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,881 copying htmd/share/builder/amberfiles/cofactors/README.txt -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,884 copying htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,886 copying htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,888 copying htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,890 copying htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,892 copying htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,894 copying htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/lib/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:42,897 creating build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,898 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,900 copying htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,902 copying htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,904 copying htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,907 copying htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,909 copying htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,911 copying htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,914 copying htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,916 copying htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,919 copying htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,921 copying htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,923 copying htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,925 copying htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,927 copying htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,930 copying htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,932 copying htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,934 copying htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,936 copying htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,938 copying htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,941 copying htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,943 copying htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,945 copying htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,947 copying htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,949 copying htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,951 copying htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,953 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,956 copying htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,958 copying htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,960 copying htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,962 copying htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,965 copying htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,967 copying htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,969 copying htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,971 copying htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,973 copying htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,975 copying htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,977 copying htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,980 copying htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,982 copying htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,984 copying htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,987 copying htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,989 copying htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,991 copying htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,994 copying htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,996 copying htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:42,998 copying htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:43,000 copying htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:43,002 copying htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:43,005 creating build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,006 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,009 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,011 copying htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,013 copying htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,018 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,020 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,022 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,024 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,026 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,029 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,031 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,033 copying htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,035 copying htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,038 copying htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,040 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,042 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,044 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,047 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,049 copying htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,051 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,053 copying htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,056 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,058 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,060 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,062 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,064 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,066 copying htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,068 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,071 copying htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,073 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,074 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,077 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,079 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,081 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,083 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,085 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,087 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,089 copying htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,091 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,093 copying htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,095 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,097 copying htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,099 copying htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,101 copying htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,104 copying htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,106 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,108 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,110 copying htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,113 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,115 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,117 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,119 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,121 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,124 copying htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,126 copying htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,128 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,130 copying htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,132 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,135 copying htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,137 copying htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,139 copying htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,141 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,143 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,146 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,148 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,150 copying htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,152 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,155 copying htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,157 copying htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,159 copying htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,161 copying htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,163 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,165 copying htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,168 copying htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,170 copying htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,172 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,175 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,177 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,179 copying htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,181 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,183 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,186 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,188 copying htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,190 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,193 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,195 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,197 copying htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,199 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,202 copying htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,204 copying htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,206 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,208 copying htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,211 copying htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,213 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,215 copying htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,217 copying htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,220 copying htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,222 copying htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,224 copying htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,226 copying htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,228 copying htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,231 copying htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,233 copying htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,235 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,237 copying htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,239 copying htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,241 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,243 copying htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,245 copying htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,248 copying htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,250 copying htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,252 copying htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,255 copying htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,257 copying htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,259 copying htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,261 copying htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,263 copying htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,266 copying htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,268 copying htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,270 copying htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,272 copying htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,275 copying htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,277 copying htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,279 copying htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,281 copying htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,283 copying htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,286 copying htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,288 copying htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,290 copying htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,293 copying htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,295 copying htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,297 copying htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/lib/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:43,299 creating build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,300 copying htmd/share/builder/caps/NHE.pdb -> build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,302 copying htmd/share/builder/caps/ACE.cif -> build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,305 copying htmd/share/builder/caps/ACE.pdb -> build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,307 copying htmd/share/builder/caps/NME.cif -> build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,309 copying htmd/share/builder/caps/NME.pdb -> build/lib/htmd/share/builder/caps 2026-03-27T06:25:43,312 creating build/lib/htmd/share/builder/charmmfiles 2026-03-27T06:25:43,313 copying htmd/share/builder/charmmfiles/README.md -> build/lib/htmd/share/builder/charmmfiles 2026-03-27T06:25:43,315 copying htmd/share/builder/charmmfiles/Makefile -> build/lib/htmd/share/builder/charmmfiles 2026-03-27T06:25:43,317 creating build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,319 copying htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,324 copying htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,327 copying htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,332 copying htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,335 copying htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,338 copying htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,341 copying htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,358 copying htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,363 copying htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,369 copying htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/lib/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:43,373 creating build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,374 copying htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,378 copying htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,381 copying htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,391 copying htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,407 copying htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,411 copying htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,415 copying htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,453 copying htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,456 copying htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,463 copying htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/lib/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:43,466 creating build/lib/htmd/share/builder/charmmfiles/str 2026-03-27T06:25:43,467 copying htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/lib/htmd/share/builder/charmmfiles/str 2026-03-27T06:25:43,470 creating build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-03-27T06:25:43,471 copying htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/lib/htmd/share/builder/charmmfiles/str/cphmd 2026-03-27T06:25:43,474 creating build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,475 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,483 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,502 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,507 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,513 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,535 copying htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/lib/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:43,538 creating build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,539 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,543 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,546 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,552 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,556 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,559 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,589 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,592 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,595 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,598 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,601 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,606 copying htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/lib/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:43,608 creating build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,609 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,624 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,629 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,637 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,643 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,648 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,652 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,654 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,659 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,689 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,706 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,739 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,752 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,760 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,768 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,771 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,775 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,778 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,814 copying htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/lib/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:43,819 creating build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,820 copying htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,823 copying htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,826 copying htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,830 copying htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,833 copying htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/lib/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:43,836 creating build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,837 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,902 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,958 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,963 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,968 copying htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/lib/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:43,987 installing to build/bdist.linux-armv7l/wheel 2026-03-27T06:25:43,987 running install 2026-03-27T06:25:44,010 running install_lib 2026-03-27T06:25:44,018 creating build/bdist.linux-armv7l/wheel 2026-03-27T06:25:44,020 creating build/bdist.linux-armv7l/wheel/htmd 2026-03-27T06:25:44,022 copying build/lib/htmd/metricdata.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,026 creating build/bdist.linux-armv7l/wheel/htmd/projections 2026-03-27T06:25:44,027 copying build/lib/htmd/projections/metric.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-03-27T06:25:44,030 copying build/lib/htmd/projections/tica.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-03-27T06:25:44,033 copying build/lib/htmd/projections/gwpca.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-03-27T06:25:44,035 copying build/lib/htmd/projections/kmeanstri.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-03-27T06:25:44,037 copying build/lib/htmd/projections/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/projections 2026-03-27T06:25:44,039 copying build/lib/htmd/util.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,042 copying build/lib/htmd/dock.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,044 copying build/lib/htmd/config.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,046 copying build/lib/htmd/home.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,049 creating build/bdist.linux-armv7l/wheel/htmd/adaptive 2026-03-27T06:25:44,050 copying build/lib/htmd/adaptive/adaptivebandit.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,053 copying build/lib/htmd/adaptive/util.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,056 copying build/lib/htmd/adaptive/adaptivegoaleg.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,058 copying build/lib/htmd/adaptive/adaptive.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,061 copying build/lib/htmd/adaptive/adaptivegoal.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,064 copying build/lib/htmd/adaptive/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,066 copying build/lib/htmd/adaptive/adaptiverun.py -> build/bdist.linux-armv7l/wheel/./htmd/adaptive 2026-03-27T06:25:44,069 copying build/lib/htmd/model.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,073 copying build/lib/htmd/units.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,075 copying build/lib/htmd/decorators.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,077 copying build/lib/htmd/ui.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,080 creating build/bdist.linux-armv7l/wheel/htmd/membranebuilder 2026-03-27T06:25:44,081 copying build/lib/htmd/membranebuilder/globalminimization.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-03-27T06:25:44,084 copying build/lib/htmd/membranebuilder/build_membrane.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-03-27T06:25:44,086 copying build/lib/htmd/membranebuilder/ljfluid.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-03-27T06:25:44,089 copying build/lib/htmd/membranebuilder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-03-27T06:25:44,091 copying build/lib/htmd/membranebuilder/ringpenetration.py -> build/bdist.linux-armv7l/wheel/./htmd/membranebuilder 2026-03-27T06:25:44,093 copying build/lib/htmd/mutualinformation.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:44,097 creating build/bdist.linux-armv7l/wheel/htmd/share 2026-03-27T06:25:44,098 copying build/lib/htmd/share/license-checker -> build/bdist.linux-armv7l/wheel/./htmd/share 2026-03-27T06:25:44,110 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder 2026-03-27T06:25:44,112 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids 2026-03-27T06:25:44,114 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/chl1 2026-03-27T06:25:44,115 copying build/lib/htmd/share/membranebuilder/lipids/chl1/chl1.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/chl1 2026-03-27T06:25:44,117 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/popc 2026-03-27T06:25:44,118 copying build/lib/htmd/share/membranebuilder/lipids/popc/popc.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/popc 2026-03-27T06:25:44,121 creating build/bdist.linux-armv7l/wheel/htmd/share/membranebuilder/lipids/pope 2026-03-27T06:25:44,122 copying build/lib/htmd/share/membranebuilder/lipids/pope/pope.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids/pope 2026-03-27T06:25:44,125 copying build/lib/htmd/share/membranebuilder/lipids/lipiddb.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/membranebuilder/lipids 2026-03-27T06:25:44,127 creating build/bdist.linux-armv7l/wheel/htmd/share/solvate 2026-03-27T06:25:44,128 copying build/lib/htmd/share/solvate/wat.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/solvate 2026-03-27T06:25:44,214 creating build/bdist.linux-armv7l/wheel/htmd/share/builder 2026-03-27T06:25:44,215 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles 2026-03-27T06:25:44,217 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,218 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,220 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,223 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15 -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,225 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,228 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,230 copying build/lib/htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-nucleic-OL15 2026-03-27T06:25:44,233 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,233 copying build/lib/htmd/share/builder/amberfiles/cofactors/cofactors.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,236 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,238 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,240 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,242 copying build/lib/htmd/share/builder/amberfiles/cofactors/GDP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,244 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,246 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,248 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,250 copying build/lib/htmd/share/builder/amberfiles/cofactors/ADP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,252 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,254 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,256 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,257 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAI.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,260 copying build/lib/htmd/share/builder/amberfiles/cofactors/GTP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,261 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,264 copying build/lib/htmd/share/builder/amberfiles/cofactors/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,265 copying build/lib/htmd/share/builder/amberfiles/cofactors/NAD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,267 copying build/lib/htmd/share/builder/amberfiles/cofactors/FMN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,269 copying build/lib/htmd/share/builder/amberfiles/cofactors/ATP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,271 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,273 copying build/lib/htmd/share/builder/amberfiles/cofactors/AMP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,275 copying build/lib/htmd/share/builder/amberfiles/cofactors/HEM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/cofactors 2026-03-27T06:25:44,278 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,279 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,281 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,283 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,284 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,286 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CGU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,288 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,290 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ffptm.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,294 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,296 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,297 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,299 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,301 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,303 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,305 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,306 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,308 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,310 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,312 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,314 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,316 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,317 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,319 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,321 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,323 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,325 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,326 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,328 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,330 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,331 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,333 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,335 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,336 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,338 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,340 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,341 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/TPO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,343 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,345 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,347 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,348 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,350 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/P1L.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,353 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,354 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/SEP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,356 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,358 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,360 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,361 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/PRK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,363 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,365 copying build/lib/htmd/share/builder/amberfiles/ff-ptm/BTK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ptm 2026-03-27T06:25:44,370 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,371 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,373 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,374 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,376 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,382 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,384 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,385 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,387 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,389 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,390 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,392 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,394 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,396 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,398 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,400 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,402 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,403 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,405 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,407 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/004.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,408 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,410 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,412 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,414 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,415 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,417 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,419 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,421 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,422 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,424 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,426 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,427 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,429 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,431 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,432 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,434 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,436 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,437 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,439 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,441 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,442 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,444 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,446 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,447 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,449 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,451 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,453 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,455 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,457 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,458 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,460 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,462 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,464 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,465 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,467 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,469 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,470 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,472 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,474 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,475 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,477 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,479 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,481 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,482 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,484 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,486 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,488 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,489 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,491 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,493 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,494 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,496 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/APD.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,498 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,500 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,502 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,504 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,505 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,507 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,509 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,510 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,512 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,514 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,516 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,517 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LME.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,519 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,521 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,523 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,525 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,526 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,528 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,530 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,532 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,533 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,535 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,537 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,538 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,540 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,542 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,544 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/README.txt -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,546 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,547 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,549 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,551 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,552 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,554 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,555 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,557 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,559 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,561 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,562 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,564 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,566 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,567 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,569 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,571 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,573 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,575 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,577 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,579 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,580 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,582 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,585 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,587 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,589 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,592 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,594 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,596 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,598 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,600 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,603 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,605 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,607 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,609 copying build/lib/htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/amberfiles/ff-ncaa 2026-03-27T06:25:44,612 copying build/lib/htmd/share/builder/charmmlipid2amber.csv -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-03-27T06:25:44,624 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/caps 2026-03-27T06:25:44,626 copying build/lib/htmd/share/builder/caps/NHE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-03-27T06:25:44,628 copying build/lib/htmd/share/builder/caps/ACE.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-03-27T06:25:44,630 copying build/lib/htmd/share/builder/caps/ACE.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-03-27T06:25:44,633 copying build/lib/htmd/share/builder/caps/NME.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-03-27T06:25:44,635 copying build/lib/htmd/share/builder/caps/NME.pdb -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/caps 2026-03-27T06:25:44,638 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles 2026-03-27T06:25:44,640 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,641 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22star_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,654 copying build/lib/htmd/share/builder/charmmfiles/par/par_all35_ethers.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,657 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36m_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,664 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,668 copying build/lib/htmd/share/builder/charmmfiles/par/par_water_ions.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,671 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,674 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,706 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_carb.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,712 copying build/lib/htmd/share/builder/charmmfiles/par/par_all22_prot.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,718 copying build/lib/htmd/share/builder/charmmfiles/par/par_all36_na.prm -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/par 2026-03-27T06:25:44,722 copying build/lib/htmd/share/builder/charmmfiles/README.md -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-03-27T06:25:44,725 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,727 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_na.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,730 copying build/lib/htmd/share/builder/charmmfiles/top/top_water_ions.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,733 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,750 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,774 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,778 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,783 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,831 copying build/lib/htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,834 copying build/lib/htmd/share/builder/charmmfiles/top/top_all36_carb.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,841 copying build/lib/htmd/share/builder/charmmfiles/top/top_all22_prot.rtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/top 2026-03-27T06:25:44,844 copying build/lib/htmd/share/builder/charmmfiles/Makefile -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles 2026-03-27T06:25:44,847 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str 2026-03-27T06:25:44,849 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/cphmd 2026-03-27T06:25:44,851 copying build/lib/htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/cphmd 2026-03-27T06:25:44,854 copying build/lib/htmd/share/builder/charmmfiles/str/toppar_water_ions.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str 2026-03-27T06:25:44,857 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,858 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,867 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,895 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,900 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,906 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,932 copying build/lib/htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/na 2026-03-27T06:25:44,936 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,937 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,941 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,944 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,952 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,957 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,959 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,988 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,990 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,993 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,995 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:44,999 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:45,003 copying build/lib/htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/prot 2026-03-27T06:25:45,006 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,007 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,020 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,023 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,031 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,036 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,040 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,044 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,046 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,052 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,076 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,093 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,135 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,149 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,156 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,164 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,168 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,172 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,174 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,200 copying build/lib/htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/lipid 2026-03-27T06:25:45,205 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,206 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,208 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,211 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,214 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_amines.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,216 copying build/lib/htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/misc 2026-03-27T06:25:45,219 creating build/bdist.linux-armv7l/wheel/htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,230 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,255 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,279 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,283 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,287 copying build/lib/htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str -> build/bdist.linux-armv7l/wheel/./htmd/share/builder/charmmfiles/str/carb 2026-03-27T06:25:45,290 copying build/lib/htmd/share/builder/triala_capped.cif -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-03-27T06:25:45,293 copying build/lib/htmd/share/builder/triala_capped.mmtf -> build/bdist.linux-armv7l/wheel/./htmd/share/builder 2026-03-27T06:25:45,295 copying build/lib/htmd/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,297 copying build/lib/htmd/pathplanning.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,300 copying build/lib/htmd/simlist.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,302 copying build/lib/htmd/versionwarnings.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,304 copying build/lib/htmd/kinetics.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,307 copying build/lib/htmd/session.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,308 copying build/lib/htmd/metricdatagenerator.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,311 creating build/bdist.linux-armv7l/wheel/htmd/clustering 2026-03-27T06:25:45,312 copying build/lib/htmd/clustering/kcenters.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-03-27T06:25:45,314 copying build/lib/htmd/clustering/regular.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-03-27T06:25:45,317 copying build/lib/htmd/clustering/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/clustering 2026-03-27T06:25:45,318 copying build/lib/htmd/latest.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,320 copying build/lib/htmd/parallelprogress.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,323 creating build/bdist.linux-armv7l/wheel/htmd/builder 2026-03-27T06:25:45,324 copying build/lib/htmd/builder/builder.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,326 copying build/lib/htmd/builder/ionize.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,329 copying build/lib/htmd/builder/charmm.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,332 copying build/lib/htmd/builder/solvate.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,334 copying build/lib/htmd/builder/amber.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,338 copying build/lib/htmd/builder/__init__.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,340 copying build/lib/htmd/builder/loopmodeler.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,342 copying build/lib/htmd/builder/noncanonical.py -> build/bdist.linux-armv7l/wheel/./htmd/builder 2026-03-27T06:25:45,345 copying build/lib/htmd/license.py -> build/bdist.linux-armv7l/wheel/./htmd 2026-03-27T06:25:45,347 running install_egg_info 2026-03-27T06:25:45,359 running egg_info 2026-03-27T06:25:45,366 writing acellera_htmd.egg-info/PKG-INFO 2026-03-27T06:25:45,370 writing dependency_links to acellera_htmd.egg-info/dependency_links.txt 2026-03-27T06:25:45,372 writing entry points to acellera_htmd.egg-info/entry_points.txt 2026-03-27T06:25:45,375 writing requirements to acellera_htmd.egg-info/requires.txt 2026-03-27T06:25:45,376 writing top-level names to acellera_htmd.egg-info/top_level.txt 2026-03-27T06:25:45,442 /tmp/pip-build-env-15h1gdmy/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-03-27T06:25:45,443 return get_active_overrides().subprocess_timeout 2026-03-27T06:25:45,449 listing git files failed - pretending there aren't any 2026-03-27T06:25:45,454 reading manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:45,473 reading manifest template 'MANIFEST.in' 2026-03-27T06:25:45,492 no previously-included directories found matching 'htmd/data' 2026-03-27T06:25:45,493 no previously-included directories found matching '.github' 2026-03-27T06:25:45,494 no previously-included directories found matching 'doc' 2026-03-27T06:25:45,496 no previously-included directories found matching 'package' 2026-03-27T06:25:45,497 no previously-included directories found matching 'tests' 2026-03-27T06:25:45,498 no previously-included directories found matching 'tutorials' 2026-03-27T06:25:45,500 warning: no previously-included files found matching 'Makefile' 2026-03-27T06:25:45,500 adding license file 'LICENSE' 2026-03-27T06:25:45,522 writing manifest file 'acellera_htmd.egg-info/SOURCES.txt' 2026-03-27T06:25:45,524 Copying acellera_htmd.egg-info to build/bdist.linux-armv7l/wheel/./acellera_htmd-2.5.9-py3.11.egg-info 2026-03-27T06:25:45,536 running install_scripts 2026-03-27T06:25:45,546 creating build/bdist.linux-armv7l/wheel/acellera_htmd-2.5.9.dist-info/WHEEL 2026-03-27T06:25:45,549 creating '/tmp/pip-wheel-72f30plz/.tmp-79y245ei/acellera_htmd-2.5.9-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T06:25:45,552 adding 'acellera_htmd-2.5.9.dist-info/licenses/LICENSE' 2026-03-27T06:25:45,554 adding 'htmd/__init__.py' 2026-03-27T06:25:45,556 adding 'htmd/config.py' 2026-03-27T06:25:45,557 adding 'htmd/decorators.py' 2026-03-27T06:25:45,559 adding 'htmd/dock.py' 2026-03-27T06:25:45,561 adding 'htmd/home.py' 2026-03-27T06:25:45,563 adding 'htmd/kinetics.py' 2026-03-27T06:25:45,565 adding 'htmd/latest.py' 2026-03-27T06:25:45,566 adding 'htmd/license.py' 2026-03-27T06:25:45,573 adding 'htmd/metricdata.py' 2026-03-27T06:25:45,575 adding 'htmd/metricdatagenerator.py' 2026-03-27T06:25:45,584 adding 'htmd/model.py' 2026-03-27T06:25:45,586 adding 'htmd/mutualinformation.py' 2026-03-27T06:25:45,588 adding 'htmd/parallelprogress.py' 2026-03-27T06:25:45,590 adding 'htmd/pathplanning.py' 2026-03-27T06:25:45,591 adding 'htmd/session.py' 2026-03-27T06:25:45,594 adding 'htmd/simlist.py' 2026-03-27T06:25:45,596 adding 'htmd/ui.py' 2026-03-27T06:25:45,597 adding 'htmd/units.py' 2026-03-27T06:25:45,599 adding 'htmd/util.py' 2026-03-27T06:25:45,600 adding 'htmd/versionwarnings.py' 2026-03-27T06:25:45,602 adding 'htmd/adaptive/__init__.py' 2026-03-27T06:25:45,605 adding 'htmd/adaptive/adaptive.py' 2026-03-27T06:25:45,608 adding 'htmd/adaptive/adaptivebandit.py' 2026-03-27T06:25:45,611 adding 'htmd/adaptive/adaptivegoal.py' 2026-03-27T06:25:45,613 adding 'htmd/adaptive/adaptivegoaleg.py' 2026-03-27T06:25:45,616 adding 'htmd/adaptive/adaptiverun.py' 2026-03-27T06:25:45,618 adding 'htmd/adaptive/util.py' 2026-03-27T06:25:45,619 adding 'htmd/builder/__init__.py' 2026-03-27T06:25:45,626 adding 'htmd/builder/amber.py' 2026-03-27T06:25:45,629 adding 'htmd/builder/builder.py' 2026-03-27T06:25:45,634 adding 'htmd/builder/charmm.py' 2026-03-27T06:25:45,636 adding 'htmd/builder/ionize.py' 2026-03-27T06:25:45,638 adding 'htmd/builder/loopmodeler.py' 2026-03-27T06:25:45,641 adding 'htmd/builder/noncanonical.py' 2026-03-27T06:25:45,643 adding 'htmd/builder/solvate.py' 2026-03-27T06:25:45,645 adding 'htmd/clustering/__init__.py' 2026-03-27T06:25:45,646 adding 'htmd/clustering/kcenters.py' 2026-03-27T06:25:45,648 adding 'htmd/clustering/regular.py' 2026-03-27T06:25:45,650 adding 'htmd/membranebuilder/__init__.py' 2026-03-27T06:25:45,652 adding 'htmd/membranebuilder/build_membrane.py' 2026-03-27T06:25:45,654 adding 'htmd/membranebuilder/globalminimization.py' 2026-03-27T06:25:45,655 adding 'htmd/membranebuilder/ljfluid.py' 2026-03-27T06:25:45,657 adding 'htmd/membranebuilder/ringpenetration.py' 2026-03-27T06:25:45,659 adding 'htmd/projections/__init__.py' 2026-03-27T06:25:45,660 adding 'htmd/projections/gwpca.py' 2026-03-27T06:25:45,662 adding 'htmd/projections/kmeanstri.py' 2026-03-27T06:25:45,664 adding 'htmd/projections/metric.py' 2026-03-27T06:25:45,666 adding 'htmd/projections/tica.py' 2026-03-27T06:25:45,723 adding 'htmd/share/license-checker' 2026-03-27T06:25:45,756 adding 'htmd/share/builder/charmmlipid2amber.csv' 2026-03-27T06:25:45,759 adding 'htmd/share/builder/triala_capped.cif' 2026-03-27T06:25:45,760 adding 'htmd/share/builder/triala_capped.mmtf' 2026-03-27T06:25:45,763 adding 'htmd/share/builder/amberfiles/cofactors/ADP.frcmod' 2026-03-27T06:25:45,764 adding 'htmd/share/builder/amberfiles/cofactors/ADP.prepi' 2026-03-27T06:25:45,766 adding 'htmd/share/builder/amberfiles/cofactors/AMP.frcmod' 2026-03-27T06:25:45,767 adding 'htmd/share/builder/amberfiles/cofactors/AMP.prepi' 2026-03-27T06:25:45,768 adding 'htmd/share/builder/amberfiles/cofactors/ATP.frcmod' 2026-03-27T06:25:45,770 adding 'htmd/share/builder/amberfiles/cofactors/ATP.prepi' 2026-03-27T06:25:45,771 adding 'htmd/share/builder/amberfiles/cofactors/FMN.frcmod' 2026-03-27T06:25:45,773 adding 'htmd/share/builder/amberfiles/cofactors/FMN.prepi' 2026-03-27T06:25:45,774 adding 'htmd/share/builder/amberfiles/cofactors/GDP.frcmod' 2026-03-27T06:25:45,776 adding 'htmd/share/builder/amberfiles/cofactors/GDP.prepi' 2026-03-27T06:25:45,777 adding 'htmd/share/builder/amberfiles/cofactors/GTP.frcmod' 2026-03-27T06:25:45,779 adding 'htmd/share/builder/amberfiles/cofactors/GTP.prepi' 2026-03-27T06:25:45,781 adding 'htmd/share/builder/amberfiles/cofactors/HEM.frcmod' 2026-03-27T06:25:45,783 adding 'htmd/share/builder/amberfiles/cofactors/HEM.prepi' 2026-03-27T06:25:45,784 adding 'htmd/share/builder/amberfiles/cofactors/NAD.frcmod' 2026-03-27T06:25:45,786 adding 'htmd/share/builder/amberfiles/cofactors/NAD.prepi' 2026-03-27T06:25:45,787 adding 'htmd/share/builder/amberfiles/cofactors/NAI.frcmod' 2026-03-27T06:25:45,789 adding 'htmd/share/builder/amberfiles/cofactors/NAI.prepi' 2026-03-27T06:25:45,790 adding 'htmd/share/builder/amberfiles/cofactors/NAP.frcmod' 2026-03-27T06:25:45,792 adding 'htmd/share/builder/amberfiles/cofactors/NAP.prepi' 2026-03-27T06:25:45,794 adding 'htmd/share/builder/amberfiles/cofactors/README.txt' 2026-03-27T06:25:45,802 adding 'htmd/share/builder/amberfiles/cofactors/cofactors.in' 2026-03-27T06:25:45,807 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.frcmod' 2026-03-27T06:25:45,808 adding 'htmd/share/builder/amberfiles/ff-ncaa/004.prepi' 2026-03-27T06:25:45,809 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod' 2026-03-27T06:25:45,811 adding 'htmd/share/builder/amberfiles/ff-ncaa/03Y.prepi' 2026-03-27T06:25:45,812 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod' 2026-03-27T06:25:45,814 adding 'htmd/share/builder/amberfiles/ff-ncaa/0A1.prepi' 2026-03-27T06:25:45,815 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.frcmod' 2026-03-27T06:25:45,817 adding 'htmd/share/builder/amberfiles/ff-ncaa/0BN.prepi' 2026-03-27T06:25:45,818 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.frcmod' 2026-03-27T06:25:45,819 adding 'htmd/share/builder/amberfiles/ff-ncaa/1MH.prepi' 2026-03-27T06:25:45,821 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.frcmod' 2026-03-27T06:25:45,822 adding 'htmd/share/builder/amberfiles/ff-ncaa/2AS.prepi' 2026-03-27T06:25:45,824 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.frcmod' 2026-03-27T06:25:45,825 adding 'htmd/share/builder/amberfiles/ff-ncaa/2GX.prepi' 2026-03-27T06:25:45,826 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.frcmod' 2026-03-27T06:25:45,828 adding 'htmd/share/builder/amberfiles/ff-ncaa/2ML.prepi' 2026-03-27T06:25:45,829 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.frcmod' 2026-03-27T06:25:45,831 adding 'htmd/share/builder/amberfiles/ff-ncaa/4IN.prepi' 2026-03-27T06:25:45,832 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.frcmod' 2026-03-27T06:25:45,834 adding 'htmd/share/builder/amberfiles/ff-ncaa/4PH.prepi' 2026-03-27T06:25:45,835 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.frcmod' 2026-03-27T06:25:45,837 adding 'htmd/share/builder/amberfiles/ff-ncaa/5JP.prepi' 2026-03-27T06:25:45,838 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.frcmod' 2026-03-27T06:25:45,839 adding 'htmd/share/builder/amberfiles/ff-ncaa/AA4.prepi' 2026-03-27T06:25:45,840 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.frcmod' 2026-03-27T06:25:45,842 adding 'htmd/share/builder/amberfiles/ff-ncaa/ABA.prepi' 2026-03-27T06:25:45,843 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.frcmod' 2026-03-27T06:25:45,844 adding 'htmd/share/builder/amberfiles/ff-ncaa/AHP.prepi' 2026-03-27T06:25:45,845 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.frcmod' 2026-03-27T06:25:45,847 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALC.prepi' 2026-03-27T06:25:45,848 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.frcmod' 2026-03-27T06:25:45,849 adding 'htmd/share/builder/amberfiles/ff-ncaa/ALN.prepi' 2026-03-27T06:25:45,851 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.frcmod' 2026-03-27T06:25:45,852 adding 'htmd/share/builder/amberfiles/ff-ncaa/APD.prepi' 2026-03-27T06:25:45,853 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.frcmod' 2026-03-27T06:25:45,855 adding 'htmd/share/builder/amberfiles/ff-ncaa/BB8.prepi' 2026-03-27T06:25:45,856 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.frcmod' 2026-03-27T06:25:45,857 adding 'htmd/share/builder/amberfiles/ff-ncaa/BCS.prepi' 2026-03-27T06:25:45,859 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.frcmod' 2026-03-27T06:25:45,860 adding 'htmd/share/builder/amberfiles/ff-ncaa/CCS.prepi' 2026-03-27T06:25:45,861 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.frcmod' 2026-03-27T06:25:45,863 adding 'htmd/share/builder/amberfiles/ff-ncaa/CSA.prepi' 2026-03-27T06:25:45,864 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.frcmod' 2026-03-27T06:25:45,865 adding 'htmd/share/builder/amberfiles/ff-ncaa/D4P.prepi' 2026-03-27T06:25:45,867 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.frcmod' 2026-03-27T06:25:45,868 adding 'htmd/share/builder/amberfiles/ff-ncaa/DAB.prepi' 2026-03-27T06:25:45,869 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.frcmod' 2026-03-27T06:25:45,871 adding 'htmd/share/builder/amberfiles/ff-ncaa/DPP.prepi' 2026-03-27T06:25:45,872 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod' 2026-03-27T06:25:45,873 adding 'htmd/share/builder/amberfiles/ff-ncaa/ESC.prepi' 2026-03-27T06:25:45,874 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod' 2026-03-27T06:25:45,876 adding 'htmd/share/builder/amberfiles/ff-ncaa/FGL.prepi' 2026-03-27T06:25:45,877 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod' 2026-03-27T06:25:45,879 adding 'htmd/share/builder/amberfiles/ff-ncaa/GHG.prepi' 2026-03-27T06:25:45,880 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod' 2026-03-27T06:25:45,881 adding 'htmd/share/builder/amberfiles/ff-ncaa/GME.prepi' 2026-03-27T06:25:45,883 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.frcmod' 2026-03-27T06:25:45,884 adding 'htmd/share/builder/amberfiles/ff-ncaa/GNC.prepi' 2026-03-27T06:25:45,885 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod' 2026-03-27T06:25:45,887 adding 'htmd/share/builder/amberfiles/ff-ncaa/HHK.prepi' 2026-03-27T06:25:45,888 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.frcmod' 2026-03-27T06:25:45,890 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLU.prepi' 2026-03-27T06:25:45,891 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.frcmod' 2026-03-27T06:25:45,892 adding 'htmd/share/builder/amberfiles/ff-ncaa/HLX.prepi' 2026-03-27T06:25:45,894 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.frcmod' 2026-03-27T06:25:45,895 adding 'htmd/share/builder/amberfiles/ff-ncaa/HOX.prepi' 2026-03-27T06:25:45,897 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.frcmod' 2026-03-27T06:25:45,898 adding 'htmd/share/builder/amberfiles/ff-ncaa/HPE.prepi' 2026-03-27T06:25:45,900 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.frcmod' 2026-03-27T06:25:45,901 adding 'htmd/share/builder/amberfiles/ff-ncaa/HQA.prepi' 2026-03-27T06:25:45,902 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.frcmod' 2026-03-27T06:25:45,904 adding 'htmd/share/builder/amberfiles/ff-ncaa/HTR.prepi' 2026-03-27T06:25:45,905 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.frcmod' 2026-03-27T06:25:45,906 adding 'htmd/share/builder/amberfiles/ff-ncaa/I2M.prepi' 2026-03-27T06:25:45,907 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.frcmod' 2026-03-27T06:25:45,909 adding 'htmd/share/builder/amberfiles/ff-ncaa/IGL.prepi' 2026-03-27T06:25:45,910 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.frcmod' 2026-03-27T06:25:45,911 adding 'htmd/share/builder/amberfiles/ff-ncaa/IIL.prepi' 2026-03-27T06:25:45,912 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.frcmod' 2026-03-27T06:25:45,913 adding 'htmd/share/builder/amberfiles/ff-ncaa/IML.prepi' 2026-03-27T06:25:45,914 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.frcmod' 2026-03-27T06:25:45,916 adding 'htmd/share/builder/amberfiles/ff-ncaa/KYN.prepi' 2026-03-27T06:25:45,917 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.frcmod' 2026-03-27T06:25:45,918 adding 'htmd/share/builder/amberfiles/ff-ncaa/LME.prepi' 2026-03-27T06:25:45,920 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.frcmod' 2026-03-27T06:25:45,921 adding 'htmd/share/builder/amberfiles/ff-ncaa/LMQ.prepi' 2026-03-27T06:25:45,922 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.frcmod' 2026-03-27T06:25:45,923 adding 'htmd/share/builder/amberfiles/ff-ncaa/ME0.prepi' 2026-03-27T06:25:45,924 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.frcmod' 2026-03-27T06:25:45,926 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEA.prepi' 2026-03-27T06:25:45,927 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.frcmod' 2026-03-27T06:25:45,928 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEN.prepi' 2026-03-27T06:25:45,929 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.frcmod' 2026-03-27T06:25:45,931 adding 'htmd/share/builder/amberfiles/ff-ncaa/MEQ.prepi' 2026-03-27T06:25:45,932 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.frcmod' 2026-03-27T06:25:45,933 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLE.prepi' 2026-03-27T06:25:45,934 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.frcmod' 2026-03-27T06:25:45,936 adding 'htmd/share/builder/amberfiles/ff-ncaa/MLZ.prepi' 2026-03-27T06:25:45,937 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.frcmod' 2026-03-27T06:25:45,938 adding 'htmd/share/builder/amberfiles/ff-ncaa/MME.prepi' 2026-03-27T06:25:45,940 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.frcmod' 2026-03-27T06:25:45,941 adding 'htmd/share/builder/amberfiles/ff-ncaa/MMO.prepi' 2026-03-27T06:25:45,942 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.frcmod' 2026-03-27T06:25:45,943 adding 'htmd/share/builder/amberfiles/ff-ncaa/MVA.prepi' 2026-03-27T06:25:45,945 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.frcmod' 2026-03-27T06:25:45,946 adding 'htmd/share/builder/amberfiles/ff-ncaa/NAL.prepi' 2026-03-27T06:25:45,947 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.frcmod' 2026-03-27T06:25:45,949 adding 'htmd/share/builder/amberfiles/ff-ncaa/NCY.prepi' 2026-03-27T06:25:45,950 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.frcmod' 2026-03-27T06:25:45,951 adding 'htmd/share/builder/amberfiles/ff-ncaa/NLE.prepi' 2026-03-27T06:25:45,952 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.frcmod' 2026-03-27T06:25:45,954 adding 'htmd/share/builder/amberfiles/ff-ncaa/NVA.prepi' 2026-03-27T06:25:45,955 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.frcmod' 2026-03-27T06:25:45,956 adding 'htmd/share/builder/amberfiles/ff-ncaa/NZC.prepi' 2026-03-27T06:25:45,957 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.frcmod' 2026-03-27T06:25:45,959 adding 'htmd/share/builder/amberfiles/ff-ncaa/OCY.prepi' 2026-03-27T06:25:45,960 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod' 2026-03-27T06:25:45,961 adding 'htmd/share/builder/amberfiles/ff-ncaa/OMX.prepi' 2026-03-27T06:25:45,962 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod' 2026-03-27T06:25:45,964 adding 'htmd/share/builder/amberfiles/ff-ncaa/ONL.prepi' 2026-03-27T06:25:45,965 adding 'htmd/share/builder/amberfiles/ff-ncaa/README.txt' 2026-03-27T06:25:45,966 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod' 2026-03-27T06:25:45,967 adding 'htmd/share/builder/amberfiles/ff-ncaa/TRO.prepi' 2026-03-27T06:25:45,968 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod' 2026-03-27T06:25:45,970 adding 'htmd/share/builder/amberfiles/ff-ncaa/TY2.prepi' 2026-03-27T06:25:45,971 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.frcmod' 2026-03-27T06:25:45,972 adding 'htmd/share/builder/amberfiles/ff-ncaa/TYQ.prepi' 2026-03-27T06:25:45,973 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod' 2026-03-27T06:25:45,975 adding 'htmd/share/builder/amberfiles/ff-ncaa/YCM.prepi' 2026-03-27T06:25:45,976 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod' 2026-03-27T06:25:45,977 adding 'htmd/share/builder/amberfiles/ff-ncaa/YNM.prepi' 2026-03-27T06:25:45,998 adding 'htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in' 2026-03-27T06:25:46,000 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt' 2026-03-27T06:25:46,002 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod' 2026-03-27T06:25:46,007 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib' 2026-03-27T06:25:46,008 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in' 2026-03-27T06:25:46,010 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log' 2026-03-27T06:25:46,012 adding 'htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15' 2026-03-27T06:25:46,014 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod' 2026-03-27T06:25:46,016 adding 'htmd/share/builder/amberfiles/ff-ptm/0AF.prepi' 2026-03-27T06:25:46,017 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod' 2026-03-27T06:25:46,018 adding 'htmd/share/builder/amberfiles/ff-ptm/2MR.prepi' 2026-03-27T06:25:46,020 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod' 2026-03-27T06:25:46,021 adding 'htmd/share/builder/amberfiles/ff-ptm/4PQ.prepi' 2026-03-27T06:25:46,023 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.frcmod' 2026-03-27T06:25:46,024 adding 'htmd/share/builder/amberfiles/ff-ptm/ALY.prepi' 2026-03-27T06:25:46,025 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.frcmod' 2026-03-27T06:25:46,027 adding 'htmd/share/builder/amberfiles/ff-ptm/BTK.prepi' 2026-03-27T06:25:46,028 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod' 2026-03-27T06:25:46,029 adding 'htmd/share/builder/amberfiles/ff-ptm/CGU.prepi' 2026-03-27T06:25:46,031 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod' 2026-03-27T06:25:46,032 adding 'htmd/share/builder/amberfiles/ff-ptm/CSO.prepi' 2026-03-27T06:25:46,034 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.frcmod' 2026-03-27T06:25:46,035 adding 'htmd/share/builder/amberfiles/ff-ptm/CSP.prepi' 2026-03-27T06:25:46,036 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod' 2026-03-27T06:25:46,038 adding 'htmd/share/builder/amberfiles/ff-ptm/CSS.prepi' 2026-03-27T06:25:46,039 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.frcmod' 2026-03-27T06:25:46,041 adding 'htmd/share/builder/amberfiles/ff-ptm/DA2.prepi' 2026-03-27T06:25:46,042 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.frcmod' 2026-03-27T06:25:46,044 adding 'htmd/share/builder/amberfiles/ff-ptm/DAH.prepi' 2026-03-27T06:25:46,045 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.frcmod' 2026-03-27T06:25:46,046 adding 'htmd/share/builder/amberfiles/ff-ptm/HY3.prepi' 2026-03-27T06:25:46,047 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.frcmod' 2026-03-27T06:25:46,049 adding 'htmd/share/builder/amberfiles/ff-ptm/HYP.prepi' 2026-03-27T06:25:46,050 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.frcmod' 2026-03-27T06:25:46,051 adding 'htmd/share/builder/amberfiles/ff-ptm/LYZ.prepi' 2026-03-27T06:25:46,053 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.frcmod' 2026-03-27T06:25:46,054 adding 'htmd/share/builder/amberfiles/ff-ptm/M3L.prepi' 2026-03-27T06:25:46,055 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.frcmod' 2026-03-27T06:25:46,057 adding 'htmd/share/builder/amberfiles/ff-ptm/MLY.prepi' 2026-03-27T06:25:46,058 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.frcmod' 2026-03-27T06:25:46,059 adding 'htmd/share/builder/amberfiles/ff-ptm/ORM.prepi' 2026-03-27T06:25:46,060 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.frcmod' 2026-03-27T06:25:46,062 adding 'htmd/share/builder/amberfiles/ff-ptm/P1L.prepi' 2026-03-27T06:25:46,063 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.frcmod' 2026-03-27T06:25:46,065 adding 'htmd/share/builder/amberfiles/ff-ptm/PCA.prepi' 2026-03-27T06:25:46,066 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.frcmod' 2026-03-27T06:25:46,067 adding 'htmd/share/builder/amberfiles/ff-ptm/PRK.prepi' 2026-03-27T06:25:46,069 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod' 2026-03-27T06:25:46,070 adding 'htmd/share/builder/amberfiles/ff-ptm/PTR.prepi' 2026-03-27T06:25:46,071 adding 'htmd/share/builder/amberfiles/ff-ptm/README.txt' 2026-03-27T06:25:46,073 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod' 2026-03-27T06:25:46,074 adding 'htmd/share/builder/amberfiles/ff-ptm/SEP.prepi' 2026-03-27T06:25:46,075 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod' 2026-03-27T06:25:46,077 adding 'htmd/share/builder/amberfiles/ff-ptm/TPO.prepi' 2026-03-27T06:25:46,088 adding 'htmd/share/builder/amberfiles/ff-ptm/ffptm.in' 2026-03-27T06:25:46,090 adding 'htmd/share/builder/caps/ACE.cif' 2026-03-27T06:25:46,091 adding 'htmd/share/builder/caps/ACE.pdb' 2026-03-27T06:25:46,092 adding 'htmd/share/builder/caps/NHE.pdb' 2026-03-27T06:25:46,093 adding 'htmd/share/builder/caps/NME.cif' 2026-03-27T06:25:46,095 adding 'htmd/share/builder/caps/NME.pdb' 2026-03-27T06:25:46,097 adding 'htmd/share/builder/charmmfiles/Makefile' 2026-03-27T06:25:46,098 adding 'htmd/share/builder/charmmfiles/README.md' 2026-03-27T06:25:46,111 adding 'htmd/share/builder/charmmfiles/par/par_all22_prot.prm' 2026-03-27T06:25:46,125 adding 'htmd/share/builder/charmmfiles/par/par_all22star_prot.prm' 2026-03-27T06:25:46,129 adding 'htmd/share/builder/charmmfiles/par/par_all35_ethers.prm' 2026-03-27T06:25:46,144 adding 'htmd/share/builder/charmmfiles/par/par_all36_carb.prm' 2026-03-27T06:25:46,230 adding 'htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm' 2026-03-27T06:25:46,240 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid.prm' 2026-03-27T06:25:46,243 adding 'htmd/share/builder/charmmfiles/par/par_all36_lipid_ljpme.prm' 2026-03-27T06:25:46,251 adding 'htmd/share/builder/charmmfiles/par/par_all36_na.prm' 2026-03-27T06:25:46,266 adding 'htmd/share/builder/charmmfiles/par/par_all36m_prot.prm' 2026-03-27T06:25:46,269 adding 'htmd/share/builder/charmmfiles/par/par_water_ions.prm' 2026-03-27T06:25:46,272 adding 'htmd/share/builder/charmmfiles/str/toppar_water_ions.str' 2026-03-27T06:25:46,348 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycolipid.str' 2026-03-27T06:25:46,358 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_glycopeptide.str' 2026-03-27T06:25:46,487 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_imlab.str' 2026-03-27T06:25:46,515 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_lignin.str' 2026-03-27T06:25:46,528 adding 'htmd/share/builder/charmmfiles/str/carb/toppar_all36_carb_model.str' 2026-03-27T06:25:46,531 adding 'htmd/share/builder/charmmfiles/str/cphmd/protpatch_protein_toppar36.str' 2026-03-27T06:25:46,570 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial.str' 2026-03-27T06:25:46,604 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_bacterial_ljpme.str' 2026-03-27T06:25:46,711 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cardiolipin.str' 2026-03-27T06:25:46,717 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cationpi_wyf.str' 2026-03-27T06:25:46,730 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol.str' 2026-03-27T06:25:46,737 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_cholesterol_model_1.str' 2026-03-27T06:25:46,830 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_detergent.str' 2026-03-27T06:25:46,854 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether.str' 2026-03-27T06:25:46,875 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_ether_ljpme.str' 2026-03-27T06:25:46,966 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_inositol.str' 2026-03-27T06:25:46,977 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_list.str' 2026-03-27T06:25:47,239 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_lps.str' 2026-03-27T06:25:47,355 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous.str' 2026-03-27T06:25:47,417 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_miscellaneous_ljpme.str' 2026-03-27T06:25:47,433 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_model.str' 2026-03-27T06:25:47,442 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_prot.str' 2026-03-27T06:25:47,458 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_sphingo.str' 2026-03-27T06:25:47,469 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast.str' 2026-03-27T06:25:47,477 adding 'htmd/share/builder/charmmfiles/str/lipid/toppar_all36_lipid_yeast_ljpme.str' 2026-03-27T06:25:47,480 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_amines.str' 2026-03-27T06:25:47,481 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_cgenff_misc.str' 2026-03-27T06:25:47,483 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_dum_noble_gases.str' 2026-03-27T06:25:47,484 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_hbond.str' 2026-03-27T06:25:47,486 adding 'htmd/share/builder/charmmfiles/str/misc/toppar_ions_won.str' 2026-03-27T06:25:47,500 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_model.str' 2026-03-27T06:25:47,526 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_modifications.str' 2026-03-27T06:25:47,547 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_nad_ppi.str' 2026-03-27T06:25:47,553 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_reactive_rna.str' 2026-03-27T06:25:47,681 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified.str' 2026-03-27T06:25:47,821 adding 'htmd/share/builder/charmmfiles/str/na/toppar_all36_na_rna_modified_for_new_psf_gen_code_2022.str' 2026-03-27T06:25:47,830 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_aldehydes.str' 2026-03-27T06:25:47,833 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_arg0.str' 2026-03-27T06:25:47,845 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_c36m_d_aminoacids.str' 2026-03-27T06:25:47,870 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_cofactors.str' 2026-03-27T06:25:47,874 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_fluoro_alkanes.str' 2026-03-27T06:25:47,877 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme.str' 2026-03-27T06:25:47,880 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_heme_for_new_psf_gen_code_2022.str' 2026-03-27T06:25:47,891 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_model.str' 2026-03-27T06:25:48,089 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_modify_res.str' 2026-03-27T06:25:48,111 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_na_combined.str' 2026-03-27T06:25:48,116 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_pyridines.str' 2026-03-27T06:25:48,124 adding 'htmd/share/builder/charmmfiles/str/prot/toppar_all36_prot_retinol.str' 2026-03-27T06:25:48,134 adding 'htmd/share/builder/charmmfiles/top/top_all22_prot.rtf' 2026-03-27T06:25:48,144 adding 'htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf' 2026-03-27T06:25:48,150 adding 'htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf' 2026-03-27T06:25:48,176 adding 'htmd/share/builder/charmmfiles/top/top_all36_carb.rtf' 2026-03-27T06:25:48,479 adding 'htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf' 2026-03-27T06:25:48,557 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf' 2026-03-27T06:25:48,607 adding 'htmd/share/builder/charmmfiles/top/top_all36_lipid_ljpme.rtf' 2026-03-27T06:25:48,614 adding 'htmd/share/builder/charmmfiles/top/top_all36_na.rtf' 2026-03-27T06:25:48,624 adding 'htmd/share/builder/charmmfiles/top/top_all36_prot.rtf' 2026-03-27T06:25:48,625 adding 'htmd/share/builder/charmmfiles/top/top_water_ions.rtf' 2026-03-27T06:25:48,627 adding 'htmd/share/membranebuilder/lipids/lipiddb.csv' 2026-03-27T06:25:48,629 adding 'htmd/share/membranebuilder/lipids/chl1/chl1.pdb' 2026-03-27T06:25:48,632 adding 'htmd/share/membranebuilder/lipids/popc/popc.pdb' 2026-03-27T06:25:48,634 adding 'htmd/share/membranebuilder/lipids/pope/pope.pdb' 2026-03-27T06:25:48,943 adding 'htmd/share/solvate/wat.pdb' 2026-03-27T06:25:48,958 adding 'acellera_htmd-2.5.9.dist-info/METADATA' 2026-03-27T06:25:48,959 adding 'acellera_htmd-2.5.9.dist-info/WHEEL' 2026-03-27T06:25:48,960 adding 'acellera_htmd-2.5.9.dist-info/entry_points.txt' 2026-03-27T06:25:48,961 adding 'acellera_htmd-2.5.9.dist-info/top_level.txt' 2026-03-27T06:25:48,966 adding 'acellera_htmd-2.5.9.dist-info/RECORD' 2026-03-27T06:25:49,018 removing build/bdist.linux-armv7l/wheel 2026-03-27T06:25:49,222 Building wheel for acellera-htmd (pyproject.toml): finished with status 'done' 2026-03-27T06:25:49,313 Created wheel for acellera-htmd: filename=acellera_htmd-2.5.9-py3-none-any.whl size=4265906 sha256=c1a9ab1a067690bc9279663b8f510ad8644a8116f8bb2346393452050018b898 2026-03-27T06:25:49,314 Stored in directory: /tmp/pip-ephem-wheel-cache-2mry_4ht/wheels/17/0f/95/9a1c5b9e5f47722958f5bdef79fa5ad15accac45b937f04efa 2026-03-27T06:25:49,337 Successfully built acellera-htmd 2026-03-27T06:25:49,449 Removed build tracker: '/tmp/pip-build-tracker-w1y6oksj'