2026-03-27T09:00:23,733 Created temporary directory: /tmp/pip-ephem-wheel-cache-gzi7rgup 2026-03-27T09:00:23,735 Created temporary directory: /tmp/pip-build-tracker-ygby8cld 2026-03-27T09:00:23,735 Initialized build tracking at /tmp/pip-build-tracker-ygby8cld 2026-03-27T09:00:23,736 Created build tracker: /tmp/pip-build-tracker-ygby8cld 2026-03-27T09:00:23,736 Entered build tracker: /tmp/pip-build-tracker-ygby8cld 2026-03-27T09:00:23,737 Created temporary directory: /tmp/pip-wheel-y9mfxwdw 2026-03-27T09:00:23,740 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T09:00:23,742 Created temporary directory: /tmp/pip-ephem-wheel-cache-i0wcx285 2026-03-27T09:00:23,764 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T09:00:23,767 2 location(s) to search for versions of omicverse: 2026-03-27T09:00:23,767 * https://pypi.org/simple/omicverse/ 2026-03-27T09:00:23,767 * https://www.piwheels.org/simple/omicverse/ 2026-03-27T09:00:23,768 Fetching project page and analyzing links: https://pypi.org/simple/omicverse/ 2026-03-27T09:00:23,769 Getting page https://pypi.org/simple/omicverse/ 2026-03-27T09:00:23,770 Found index url https://pypi.org/simple 2026-03-27T09:00:25,034 Fetched page https://pypi.org/simple/omicverse/ as application/vnd.pypi.simple.v1+json 2026-03-27T09:00:25,058 Skipping link: No binaries permitted for omicverse: 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,373 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,374 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,374 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,375 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,376 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,376 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,377 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,377 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,378 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,378 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,378 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,379 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,380 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,380 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,381 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,381 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,382 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,382 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-03-27T09:00:25,383 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-03-27T09:00:25,384 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-03-27T09:00:25,410 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-03-27T09:00:25,428 Collecting omicverse==2.1.1rc1 2026-03-27T09:00:25,430 Created temporary directory: /tmp/pip-unpack-56t_5482 2026-03-27T09:00:25,583 Downloading omicverse-2.1.1rc1.tar.gz (11.9 MB) 2026-03-27T09:00:31,280 Added omicverse==2.1.1rc1 from https://files.pythonhosted.org/packages/25/44/53e34f37c7b946a306698a1687bf55518718b38843474ed6cd8f2bccc6ae/omicverse-2.1.1rc1.tar.gz to build tracker '/tmp/pip-build-tracker-ygby8cld' 2026-03-27T09:00:31,288 Created temporary directory: /tmp/pip-build-env-bk5fp2e9 2026-03-27T09:00:31,292 Installing build dependencies: started 2026-03-27T09:00:31,294 Running command pip subprocess to install build dependencies 2026-03-27T09:00:32,535 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-03-27T09:00:32,975 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-03-27T09:00:33,003 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-03-27T09:00:34,778 Collecting setuptools>=61 2026-03-27T09:00:34,854 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-03-27T09:00:35,120 Collecting wheel 2026-03-27T09:00:35,136 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-03-27T09:00:37,370 Collecting Cython 2026-03-27T09:00:38,282 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-03-27T09:00:38,793 Collecting packaging>=24.0 2026-03-27T09:00:38,809 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-03-27T09:00:41,943 Installing collected packages: setuptools, packaging, Cython, wheel 2026-03-27T09:00:49,365 Creating /tmp/pip-build-env-bk5fp2e9/overlay/local/bin 2026-03-27T09:00:49,402 changing mode of /tmp/pip-build-env-bk5fp2e9/overlay/local/bin/cygdb to 755 2026-03-27T09:00:49,403 changing mode of /tmp/pip-build-env-bk5fp2e9/overlay/local/bin/cython to 755 2026-03-27T09:00:49,403 changing mode of /tmp/pip-build-env-bk5fp2e9/overlay/local/bin/cythonize to 755 2026-03-27T09:00:49,500 changing mode of /tmp/pip-build-env-bk5fp2e9/overlay/local/bin/wheel to 755 2026-03-27T09:00:49,528 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-03-27T09:00:49,902 Installing build dependencies: finished with status 'done' 2026-03-27T09:00:49,908 Getting requirements to build wheel: started 2026-03-27T09:00:49,909 Running command Getting requirements to build wheel 2026-03-27T09:00:50,640 /tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T09:00:50,640 !! 2026-03-27T09:00:50,641 ******************************************************************************** 2026-03-27T09:00:50,642 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T09:00:50,643 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T09:00:50,644 or your builds will no longer be supported. 2026-03-27T09:00:50,644 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T09:00:50,645 ******************************************************************************** 2026-03-27T09:00:50,646 !! 2026-03-27T09:00:50,646 corresp(dist, value, root_dir) 2026-03-27T09:00:50,923 running egg_info 2026-03-27T09:00:50,929 writing omicverse.egg-info/PKG-INFO 2026-03-27T09:00:50,946 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T09:00:50,948 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T09:00:50,958 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T09:00:50,959 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T09:00:51,212 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T09:00:51,389 reading manifest template 'MANIFEST.in' 2026-03-27T09:00:52,386 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T09:00:54,039 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T09:00:54,553 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T09:00:59,182 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T09:00:59,675 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T09:01:00,147 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T09:01:00,598 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T09:01:01,447 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T09:01:01,921 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T09:01:02,426 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T09:01:02,428 no previously-included directories found matching '.git' 2026-03-27T09:01:02,432 no previously-included directories found matching '.github' 2026-03-27T09:01:02,434 no previously-included directories found matching '.claude' 2026-03-27T09:01:02,437 no previously-included directories found matching '.pytest_cache' 2026-03-27T09:01:02,440 no previously-included directories found matching '.ruff_cache' 2026-03-27T09:01:02,442 no previously-included directories found matching '.vscode' 2026-03-27T09:01:02,445 no previously-included directories found matching 'docs' 2026-03-27T09:01:02,448 no previously-included directories found matching 'tests' 2026-03-27T09:01:02,451 no previously-included directories found matching 'OvIntelligence' 2026-03-27T09:01:02,454 no previously-included directories found matching 'READMEM' 2026-03-27T09:01:02,457 no previously-included directories found matching 'omicverse_guide' 2026-03-27T09:01:02,460 no previously-included directories found matching 'omicverse_web' 2026-03-27T09:01:02,462 no previously-included directories found matching 'tmp' 2026-03-27T09:01:02,465 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T09:01:02,468 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T09:01:02,474 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T09:01:02,482 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T09:01:02,488 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T09:01:02,488 adding license file 'LICENSE' 2026-03-27T09:01:02,562 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:02,678 Getting requirements to build wheel: finished with status 'done' 2026-03-27T09:01:02,681 Created temporary directory: /tmp/pip-modern-metadata-drqqezqh 2026-03-27T09:01:02,684 Preparing metadata (pyproject.toml): started 2026-03-27T09:01:02,685 Running command Preparing metadata (pyproject.toml) 2026-03-27T09:01:03,377 /tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T09:01:03,377 !! 2026-03-27T09:01:03,378 ******************************************************************************** 2026-03-27T09:01:03,379 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T09:01:03,380 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T09:01:03,380 or your builds will no longer be supported. 2026-03-27T09:01:03,381 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T09:01:03,381 ******************************************************************************** 2026-03-27T09:01:03,382 !! 2026-03-27T09:01:03,383 corresp(dist, value, root_dir) 2026-03-27T09:01:03,666 running dist_info 2026-03-27T09:01:03,678 creating /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info 2026-03-27T09:01:03,679 writing /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/PKG-INFO 2026-03-27T09:01:03,697 writing dependency_links to /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/dependency_links.txt 2026-03-27T09:01:03,699 writing entry points to /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/entry_points.txt 2026-03-27T09:01:03,709 writing requirements to /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/requires.txt 2026-03-27T09:01:03,710 writing top-level names to /tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/top_level.txt 2026-03-27T09:01:03,711 writing manifest file '/tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:03,940 reading manifest file '/tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:03,942 reading manifest template 'MANIFEST.in' 2026-03-27T09:01:04,938 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T09:01:06,363 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T09:01:06,861 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T09:01:11,201 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T09:01:11,678 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T09:01:12,149 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T09:01:12,626 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T09:01:13,156 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T09:01:13,672 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T09:01:14,176 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T09:01:14,179 no previously-included directories found matching '.git' 2026-03-27T09:01:14,181 no previously-included directories found matching '.github' 2026-03-27T09:01:14,184 no previously-included directories found matching '.claude' 2026-03-27T09:01:14,186 no previously-included directories found matching '.pytest_cache' 2026-03-27T09:01:14,189 no previously-included directories found matching '.ruff_cache' 2026-03-27T09:01:14,192 no previously-included directories found matching '.vscode' 2026-03-27T09:01:14,194 no previously-included directories found matching 'docs' 2026-03-27T09:01:14,197 no previously-included directories found matching 'tests' 2026-03-27T09:01:14,200 no previously-included directories found matching 'OvIntelligence' 2026-03-27T09:01:14,202 no previously-included directories found matching 'READMEM' 2026-03-27T09:01:14,205 no previously-included directories found matching 'omicverse_guide' 2026-03-27T09:01:14,208 no previously-included directories found matching 'omicverse_web' 2026-03-27T09:01:14,210 no previously-included directories found matching 'tmp' 2026-03-27T09:01:14,213 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T09:01:14,216 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T09:01:14,220 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T09:01:14,226 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T09:01:14,231 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T09:01:14,232 adding license file 'LICENSE' 2026-03-27T09:01:14,288 writing manifest file '/tmp/pip-modern-metadata-drqqezqh/omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:14,291 creating '/tmp/pip-modern-metadata-drqqezqh/omicverse-2.1.1rc1.dist-info' 2026-03-27T09:01:14,438 Preparing metadata (pyproject.toml): finished with status 'done' 2026-03-27T09:01:14,452 Source in /tmp/pip-wheel-y9mfxwdw/omicverse_427f1e183b964618919e7fd2cc02ac6f has version 2.1.1rc1, which satisfies requirement omicverse==2.1.1rc1 from https://files.pythonhosted.org/packages/25/44/53e34f37c7b946a306698a1687bf55518718b38843474ed6cd8f2bccc6ae/omicverse-2.1.1rc1.tar.gz 2026-03-27T09:01:14,453 Removed omicverse==2.1.1rc1 from https://files.pythonhosted.org/packages/25/44/53e34f37c7b946a306698a1687bf55518718b38843474ed6cd8f2bccc6ae/omicverse-2.1.1rc1.tar.gz from build tracker '/tmp/pip-build-tracker-ygby8cld' 2026-03-27T09:01:14,477 Created temporary directory: /tmp/pip-unpack-jy3440xv 2026-03-27T09:01:14,478 Building wheels for collected packages: omicverse 2026-03-27T09:01:14,486 Created temporary directory: /tmp/pip-wheel-l2cdpzbz 2026-03-27T09:01:14,486 Destination directory: /tmp/pip-wheel-l2cdpzbz 2026-03-27T09:01:14,488 Building wheel for omicverse (pyproject.toml): started 2026-03-27T09:01:14,490 Running command Building wheel for omicverse (pyproject.toml) 2026-03-27T09:01:15,129 /tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-03-27T09:01:15,129 !! 2026-03-27T09:01:15,131 ******************************************************************************** 2026-03-27T09:01:15,131 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-03-27T09:01:15,132 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-03-27T09:01:15,133 or your builds will no longer be supported. 2026-03-27T09:01:15,134 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-03-27T09:01:15,134 ******************************************************************************** 2026-03-27T09:01:15,135 !! 2026-03-27T09:01:15,136 corresp(dist, value, root_dir) 2026-03-27T09:01:15,396 running bdist_wheel 2026-03-27T09:01:15,415 running build 2026-03-27T09:01:15,416 running build_py 2026-03-27T09:01:15,423 creating build/lib/omicverse 2026-03-27T09:01:15,425 copying omicverse/claw.py -> build/lib/omicverse 2026-03-27T09:01:15,428 copying omicverse/__init__.py -> build/lib/omicverse 2026-03-27T09:01:15,431 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-03-27T09:01:15,433 copying omicverse/_registry.py -> build/lib/omicverse 2026-03-27T09:01:15,436 copying omicverse/cli.py -> build/lib/omicverse 2026-03-27T09:01:15,438 copying omicverse/_settings.py -> build/lib/omicverse 2026-03-27T09:01:15,441 copying omicverse/_monitor.py -> build/lib/omicverse 2026-03-27T09:01:15,444 creating build/lib/omicverse/popv 2026-03-27T09:01:15,445 copying omicverse/popv/__init__.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,448 copying omicverse/popv/visualization.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,450 copying omicverse/popv/preprocessing.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,452 copying omicverse/popv/_utils.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,455 copying omicverse/popv/_settings.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,457 copying omicverse/popv/annotation.py -> build/lib/omicverse/popv 2026-03-27T09:01:15,460 creating build/lib/omicverse/io 2026-03-27T09:01:15,461 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-03-27T09:01:15,463 creating build/lib/omicverse/space 2026-03-27T09:01:15,464 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-03-27T09:01:15,467 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-03-27T09:01:15,469 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-03-27T09:01:15,471 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-03-27T09:01:15,473 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-03-27T09:01:15,477 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-03-27T09:01:15,479 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-03-27T09:01:15,482 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-03-27T09:01:15,485 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-03-27T09:01:15,487 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-03-27T09:01:15,489 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-03-27T09:01:15,492 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-03-27T09:01:15,495 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-03-27T09:01:15,498 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-03-27T09:01:15,502 creating build/lib/omicverse/jarvis 2026-03-27T09:01:15,503 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,505 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,507 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,509 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,512 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,514 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,516 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,518 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,520 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,523 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,525 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,528 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,531 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,534 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-03-27T09:01:15,537 creating build/lib/omicverse/bulk 2026-03-27T09:01:15,538 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,540 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,542 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,545 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,547 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,561 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,563 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,565 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,568 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,571 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,574 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-03-27T09:01:15,576 creating build/lib/omicverse/external 2026-03-27T09:01:15,577 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-03-27T09:01:15,580 creating build/lib/omicverse/bulk2single 2026-03-27T09:01:15,581 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,583 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,585 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,587 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,590 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,592 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,594 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,597 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,599 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,601 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-03-27T09:01:15,605 creating build/lib/omicverse/pp 2026-03-27T09:01:15,606 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,608 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,610 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,612 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,614 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,617 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,620 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,622 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,624 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,628 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,630 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,632 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,634 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,637 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,640 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,642 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,645 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,647 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,649 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,651 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,654 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,656 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,659 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-03-27T09:01:15,664 creating build/lib/omicverse/pl 2026-03-27T09:01:15,665 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,668 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,670 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,676 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,678 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,681 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,684 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,687 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,689 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,693 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,696 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,698 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,701 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,704 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,706 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,709 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,711 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,716 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,718 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,720 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-03-27T09:01:15,726 creating build/lib/omicverse/biocontext 2026-03-27T09:01:15,727 copying omicverse/biocontext/__init__.py -> build/lib/omicverse/biocontext 2026-03-27T09:01:15,729 copying omicverse/biocontext/_tools.py -> build/lib/omicverse/biocontext 2026-03-27T09:01:15,732 copying omicverse/biocontext/_client.py -> build/lib/omicverse/biocontext 2026-03-27T09:01:15,735 creating build/lib/omicverse/alignment 2026-03-27T09:01:15,736 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,738 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,740 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,742 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,745 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,747 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,749 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,751 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,753 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-03-27T09:01:15,756 creating build/lib/omicverse/datasets 2026-03-27T09:01:15,757 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-03-27T09:01:15,759 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-03-27T09:01:15,762 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-03-27T09:01:15,764 creating build/lib/omicverse/fm 2026-03-27T09:01:15,765 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-03-27T09:01:15,767 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-03-27T09:01:15,770 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-03-27T09:01:15,773 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-03-27T09:01:15,776 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-03-27T09:01:15,779 creating build/lib/omicverse/llm 2026-03-27T09:01:15,780 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,782 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,784 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,788 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,793 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,795 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,799 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,801 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,805 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,808 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,810 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,813 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-03-27T09:01:15,819 creating build/lib/omicverse/utils 2026-03-27T09:01:15,820 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,822 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,825 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,827 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,830 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,832 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,835 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,837 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,841 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,843 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,846 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,848 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,850 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,852 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,854 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,857 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,859 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,863 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,865 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,868 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,870 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,873 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,876 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,879 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,883 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,885 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,890 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,893 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,898 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,901 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,906 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,910 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,913 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,917 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,919 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-03-27T09:01:15,924 creating build/lib/omicverse/single 2026-03-27T09:01:15,926 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-03-27T09:01:15,934 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-03-27T09:01:15,937 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-03-27T09:01:15,941 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-03-27T09:01:15,944 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-03-27T09:01:15,947 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-03-27T09:01:15,949 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-03-27T09:01:15,952 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-03-27T09:01:15,956 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-03-27T09:01:15,959 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-03-27T09:01:15,962 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-03-27T09:01:15,965 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-03-27T09:01:15,968 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-03-27T09:01:15,971 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-03-27T09:01:15,973 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-03-27T09:01:15,975 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-03-27T09:01:15,978 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-03-27T09:01:15,983 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-03-27T09:01:15,986 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-03-27T09:01:15,988 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-03-27T09:01:15,991 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-03-27T09:01:15,993 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-03-27T09:01:15,996 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-03-27T09:01:15,999 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-03-27T09:01:16,001 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-03-27T09:01:16,003 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-03-27T09:01:16,006 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-03-27T09:01:16,009 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-03-27T09:01:16,011 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-03-27T09:01:16,014 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-03-27T09:01:16,016 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-03-27T09:01:16,021 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-03-27T09:01:16,024 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-03-27T09:01:16,026 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-03-27T09:01:16,029 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-03-27T09:01:16,032 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-03-27T09:01:16,035 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-03-27T09:01:16,037 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-03-27T09:01:16,040 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-03-27T09:01:16,043 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-03-27T09:01:16,046 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-03-27T09:01:16,048 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-03-27T09:01:16,051 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-03-27T09:01:16,053 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-03-27T09:01:16,057 creating build/lib/omicverse/mcp 2026-03-27T09:01:16,058 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,060 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,062 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,064 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,066 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,069 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,072 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,074 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,078 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,079 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,081 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,083 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,085 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-03-27T09:01:16,088 creating build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,089 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,091 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,093 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,095 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,097 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,099 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,101 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,103 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,105 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:16,107 creating build/lib/omicverse/agent 2026-03-27T09:01:16,108 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-03-27T09:01:16,111 creating build/lib/omicverse/data_files 2026-03-27T09:01:16,112 copying omicverse/data_files/smoothDatakNN.py -> build/lib/omicverse/data_files 2026-03-27T09:01:16,115 creating build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,116 copying omicverse/popv/algorithms/__init__.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,118 copying omicverse/popv/algorithms/_rf.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,120 copying omicverse/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,121 copying omicverse/popv/algorithms/_svm.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,124 copying omicverse/popv/algorithms/_xgboost.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,126 copying omicverse/popv/algorithms/_onclass.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,128 copying omicverse/popv/algorithms/_harmony.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,130 copying omicverse/popv/algorithms/_scanorama.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,132 copying omicverse/popv/algorithms/_scanvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,134 copying omicverse/popv/algorithms/_celltypist.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,136 copying omicverse/popv/algorithms/_scvi.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,138 copying omicverse/popv/algorithms/_bbknn.py -> build/lib/omicverse/popv/algorithms 2026-03-27T09:01:16,141 creating build/lib/omicverse/popv/hub 2026-03-27T09:01:16,142 copying omicverse/popv/hub/__init__.py -> build/lib/omicverse/popv/hub 2026-03-27T09:01:16,144 copying omicverse/popv/hub/_metadata.py -> build/lib/omicverse/popv/hub 2026-03-27T09:01:16,147 copying omicverse/popv/hub/_get_metrics.py -> build/lib/omicverse/popv/hub 2026-03-27T09:01:16,149 copying omicverse/popv/hub/_model.py -> build/lib/omicverse/popv/hub 2026-03-27T09:01:16,151 copying omicverse/popv/hub/_template.py -> build/lib/omicverse/popv/hub 2026-03-27T09:01:16,153 creating build/lib/omicverse/io/bulk 2026-03-27T09:01:16,154 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-03-27T09:01:16,156 creating build/lib/omicverse/io/spatial 2026-03-27T09:01:16,157 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-03-27T09:01:16,159 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-03-27T09:01:16,162 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-03-27T09:01:16,165 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-03-27T09:01:16,168 creating build/lib/omicverse/io/single 2026-03-27T09:01:16,169 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-03-27T09:01:16,171 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-03-27T09:01:16,173 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-03-27T09:01:16,176 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-03-27T09:01:16,179 creating build/lib/omicverse/io/general 2026-03-27T09:01:16,180 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-03-27T09:01:16,182 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-03-27T09:01:16,184 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-03-27T09:01:16,187 creating build/lib/omicverse/jarvis/memory 2026-03-27T09:01:16,188 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-03-27T09:01:16,190 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-03-27T09:01:16,194 creating build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,195 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,197 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,200 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,202 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,204 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,206 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,208 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-03-27T09:01:16,211 creating build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,212 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,214 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,217 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,221 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,224 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,229 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,232 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-03-27T09:01:16,236 creating build/lib/omicverse/jarvis/gateway 2026-03-27T09:01:16,238 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T09:01:16,241 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T09:01:16,243 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-03-27T09:01:16,246 creating build/lib/omicverse/bulk/_alignment 2026-03-27T09:01:16,247 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-03-27T09:01:16,250 creating build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,251 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,254 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,257 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,259 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,261 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,263 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-03-27T09:01:16,266 creating build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,267 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,270 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,272 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,276 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,279 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-03-27T09:01:16,282 creating build/lib/omicverse/external/scSLAT 2026-03-27T09:01:16,285 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-03-27T09:01:16,287 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-03-27T09:01:16,290 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-03-27T09:01:16,292 creating build/lib/omicverse/external/cytotrace2 2026-03-27T09:01:16,293 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T09:01:16,296 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T09:01:16,298 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-03-27T09:01:16,301 creating build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,302 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,304 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,307 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,310 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,312 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,316 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,318 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,321 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,324 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,326 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-03-27T09:01:16,329 creating build/lib/omicverse/external/bin2cell 2026-03-27T09:01:16,331 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-03-27T09:01:16,333 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-03-27T09:01:16,338 creating build/lib/omicverse/external/scMulan 2026-03-27T09:01:16,339 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-03-27T09:01:16,341 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-03-27T09:01:16,344 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-03-27T09:01:16,347 creating build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,349 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,351 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,353 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,355 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,358 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,361 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,363 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,366 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,369 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,371 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,373 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,376 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,378 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,381 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,384 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-03-27T09:01:16,386 creating build/lib/omicverse/external/scdiffusion 2026-03-27T09:01:16,387 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T09:01:16,390 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T09:01:16,392 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T09:01:16,394 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-03-27T09:01:16,398 creating build/lib/omicverse/external/GNTD 2026-03-27T09:01:16,399 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T09:01:16,402 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-03-27T09:01:16,404 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-03-27T09:01:16,407 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-03-27T09:01:16,410 creating build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,411 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,413 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,416 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,418 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,420 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,423 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,425 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-03-27T09:01:16,428 creating build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,429 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,431 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,433 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,436 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,439 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:16,442 creating build/lib/omicverse/external/somde 2026-03-27T09:01:16,443 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-03-27T09:01:16,445 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-03-27T09:01:16,448 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-03-27T09:01:16,451 creating build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,452 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,454 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,457 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,459 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,462 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,464 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:16,467 creating build/lib/omicverse/external/cellanova 2026-03-27T09:01:16,469 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-03-27T09:01:16,471 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-03-27T09:01:16,474 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-03-27T09:01:16,476 creating build/lib/omicverse/external/flowsig 2026-03-27T09:01:16,478 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-03-27T09:01:16,480 creating build/lib/omicverse/external/datacollect 2026-03-27T09:01:16,482 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-03-27T09:01:16,484 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-03-27T09:01:16,487 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-03-27T09:01:16,490 creating build/lib/omicverse/external/tosica 2026-03-27T09:01:16,491 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-03-27T09:01:16,494 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-03-27T09:01:16,495 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-03-27T09:01:16,498 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-03-27T09:01:16,500 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-03-27T09:01:16,503 creating build/lib/omicverse/external/gaston 2026-03-27T09:01:16,504 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,507 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,508 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,510 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,512 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,514 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,516 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,518 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,521 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,523 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,525 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,527 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,529 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,531 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,533 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,535 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-03-27T09:01:16,537 creating build/lib/omicverse/external/bulk2single 2026-03-27T09:01:16,538 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-03-27T09:01:16,540 creating build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,541 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,543 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,545 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,547 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,549 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,551 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-03-27T09:01:16,554 creating build/lib/omicverse/external/scanorama 2026-03-27T09:01:16,555 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-03-27T09:01:16,557 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-03-27T09:01:16,559 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-03-27T09:01:16,562 creating build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,563 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,566 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,568 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,571 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,573 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,576 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,578 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,581 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,583 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-03-27T09:01:16,586 creating build/lib/omicverse/external/BINARY 2026-03-27T09:01:16,587 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-03-27T09:01:16,589 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-03-27T09:01:16,591 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-03-27T09:01:16,594 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-03-27T09:01:16,597 creating build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,598 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,600 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,602 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,604 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,606 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,608 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,610 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,612 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,614 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,615 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,618 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,620 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,623 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,624 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,627 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,629 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,631 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,634 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,636 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,638 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,641 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,643 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-03-27T09:01:16,646 creating build/lib/omicverse/external/mofapy2 2026-03-27T09:01:16,647 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-03-27T09:01:16,649 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-03-27T09:01:16,651 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-03-27T09:01:16,653 creating build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,654 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,656 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,658 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,661 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,663 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,665 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,668 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,670 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,672 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,675 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,678 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,680 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,683 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-03-27T09:01:16,686 creating build/lib/omicverse/external/cnmf 2026-03-27T09:01:16,687 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-03-27T09:01:16,690 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-03-27T09:01:16,695 creating build/lib/omicverse/external/topact 2026-03-27T09:01:16,697 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,700 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,703 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,705 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,709 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,711 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,714 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,716 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-03-27T09:01:16,719 creating build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,720 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,724 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,727 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,729 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,732 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,735 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,738 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,741 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-03-27T09:01:16,744 creating build/lib/omicverse/external/CAST 2026-03-27T09:01:16,745 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,748 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,751 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,754 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,757 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,760 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,764 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-03-27T09:01:16,768 creating build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,769 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,771 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,774 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,776 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,779 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-03-27T09:01:16,782 creating build/lib/omicverse/external/spaceflow 2026-03-27T09:01:16,783 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-03-27T09:01:16,784 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-03-27T09:01:16,787 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-03-27T09:01:16,789 creating build/lib/omicverse/external/tape 2026-03-27T09:01:16,790 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,792 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,794 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,796 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,798 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,801 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-03-27T09:01:16,803 creating build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,804 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,806 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,814 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,816 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,818 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-03-27T09:01:16,821 creating build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,822 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,824 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,826 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,828 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,831 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-03-27T09:01:16,833 creating build/lib/omicverse/external/PROST 2026-03-27T09:01:16,834 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,836 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,839 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,841 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,843 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,846 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,848 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-03-27T09:01:16,852 creating build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,853 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,855 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,857 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,859 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,861 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,864 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,865 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-03-27T09:01:16,868 creating build/lib/omicverse/external/mpl_chord 2026-03-27T09:01:16,869 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T09:01:16,871 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T09:01:16,873 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-03-27T09:01:16,877 creating build/lib/omicverse/external/palantir 2026-03-27T09:01:16,878 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,880 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,882 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,884 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,886 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,888 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,890 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,894 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,897 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,899 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,902 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-03-27T09:01:16,904 creating build/lib/omicverse/external/nocd 2026-03-27T09:01:16,905 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,907 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,909 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,911 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,913 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,916 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-03-27T09:01:16,918 creating build/lib/omicverse/external/STT 2026-03-27T09:01:16,919 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-03-27T09:01:16,922 creating build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,923 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,924 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,927 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,929 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,931 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-03-27T09:01:16,934 creating build/lib/omicverse/external/spaco 2026-03-27T09:01:16,935 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,937 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,939 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,941 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,944 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,946 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,948 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,950 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,952 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-03-27T09:01:16,955 creating build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,956 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,958 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,960 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,962 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,964 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,966 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,969 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,971 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,974 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,976 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,978 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,980 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-03-27T09:01:16,983 creating build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,984 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,986 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,988 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,991 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,993 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,996 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:16,998 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:17,001 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:17,004 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-03-27T09:01:17,007 creating build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,008 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,011 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,013 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,015 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,017 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,019 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,022 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,024 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,026 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,029 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,031 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-03-27T09:01:17,034 creating build/lib/omicverse/external/harmony 2026-03-27T09:01:17,035 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-03-27T09:01:17,037 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-03-27T09:01:17,040 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-03-27T09:01:17,043 creating build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,044 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,046 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,047 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,050 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,053 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,055 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,058 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,060 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,063 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-03-27T09:01:17,066 creating build/lib/omicverse/external/commot 2026-03-27T09:01:17,067 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-03-27T09:01:17,070 creating build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,071 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,074 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,075 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,077 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,080 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,083 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,085 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,087 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,089 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,090 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,093 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,095 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,097 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,099 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,101 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,103 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,105 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,107 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,109 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,111 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,114 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-03-27T09:01:17,116 creating build/lib/omicverse/external/scrublet 2026-03-27T09:01:17,117 copying omicverse/external/scrublet/__init__.py -> build/lib/omicverse/external/scrublet 2026-03-27T09:01:17,119 copying omicverse/external/scrublet/helper_functions.py -> build/lib/omicverse/external/scrublet 2026-03-27T09:01:17,121 copying omicverse/external/scrublet/scrublet.py -> build/lib/omicverse/external/scrublet 2026-03-27T09:01:17,124 creating build/lib/omicverse/external/VIA 2026-03-27T09:01:17,131 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,133 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,138 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,140 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,146 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,152 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,157 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-03-27T09:01:17,160 creating build/lib/omicverse/external/scSLAT/viz 2026-03-27T09:01:17,161 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T09:01:17,163 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T09:01:17,166 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-03-27T09:01:17,168 creating build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,169 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,171 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,174 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,176 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,178 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,180 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,183 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,186 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-03-27T09:01:17,189 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:17,190 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:17,193 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:17,196 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:17,197 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:17,200 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:17,203 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:17,206 creating build/lib/omicverse/external/scMulan/model 2026-03-27T09:01:17,207 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T09:01:17,210 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-03-27T09:01:17,213 creating build/lib/omicverse/external/scMulan/utils 2026-03-27T09:01:17,214 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T09:01:17,217 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-03-27T09:01:17,220 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:17,222 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:17,225 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,227 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,229 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,231 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,233 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,235 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,237 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,239 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,241 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,243 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,245 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,247 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,250 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,252 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,255 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,257 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,259 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,261 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,263 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:17,266 creating build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T09:01:17,267 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T09:01:17,268 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T09:01:17,271 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-03-27T09:01:17,273 creating build/lib/omicverse/external/space/cell2location 2026-03-27T09:01:17,275 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T09:01:17,277 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-03-27T09:01:17,280 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:17,281 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:17,283 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:17,285 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:17,287 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:17,289 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:17,290 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:17,292 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:17,295 creating build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,296 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,298 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,300 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,302 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,305 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:17,307 creating build/lib/omicverse/external/space/cell2location/nn 2026-03-27T09:01:17,308 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T09:01:17,310 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T09:01:17,313 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-03-27T09:01:17,315 creating build/lib/omicverse/external/space/cell2location/utils 2026-03-27T09:01:17,316 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T09:01:17,318 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T09:01:17,321 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-03-27T09:01:17,323 creating build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,324 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,326 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,328 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,331 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,333 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,335 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,337 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,339 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-03-27T09:01:17,342 creating build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,343 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,345 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,347 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,350 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,353 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:17,356 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:17,357 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:17,359 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:17,361 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:17,364 creating build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,365 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,368 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,369 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,371 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,373 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:17,376 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:17,377 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:17,379 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:17,382 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:17,385 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:17,386 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:17,388 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:17,390 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:17,393 creating build/lib/omicverse/external/flowsig/plotting 2026-03-27T09:01:17,393 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T09:01:17,396 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-03-27T09:01:17,398 creating build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,399 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,401 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,403 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,405 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,407 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,410 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:17,413 creating build/lib/omicverse/external/flowsig/utilities 2026-03-27T09:01:17,414 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T09:01:17,415 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-03-27T09:01:17,418 creating build/lib/omicverse/external/flowsig/tools 2026-03-27T09:01:17,419 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T09:01:17,421 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T09:01:17,424 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T09:01:17,427 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-03-27T09:01:17,429 creating build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,430 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,433 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,436 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,438 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,440 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,442 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,445 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,447 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,450 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,453 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,455 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,458 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,460 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,463 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,465 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,467 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,469 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,471 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,474 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,477 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,480 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,482 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-03-27T09:01:17,486 creating build/lib/omicverse/external/datacollect/config 2026-03-27T09:01:17,487 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T09:01:17,490 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-03-27T09:01:17,494 creating build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,496 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,498 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,501 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,504 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,507 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,510 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,513 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,515 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,519 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,521 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,524 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,527 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,530 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,532 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,535 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,537 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,540 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,543 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,546 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,549 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,551 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,554 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,557 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,560 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,562 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,565 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,568 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,571 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,574 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,576 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,579 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,581 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,583 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,586 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-03-27T09:01:17,589 creating build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,590 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,592 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,594 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,597 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,600 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,602 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-03-27T09:01:17,605 creating build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,606 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,609 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,610 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,612 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,615 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,626 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,628 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:17,631 creating build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,632 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,634 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,636 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,638 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,641 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,644 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,646 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,648 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:17,651 creating build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:17,652 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:17,654 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:17,657 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:17,659 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:17,662 creating build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,663 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,665 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,668 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,670 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,672 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,674 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-03-27T09:01:17,677 creating build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,678 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,681 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,683 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,685 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,688 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,690 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,692 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,695 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,697 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:17,700 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,701 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,703 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,705 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,708 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,709 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:17,712 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,713 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,715 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,718 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,721 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,723 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,727 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,729 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,732 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,734 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,738 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:17,741 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,742 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,743 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,745 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,747 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,749 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,752 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,753 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,756 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,757 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,760 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,761 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,764 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:17,767 creating build/lib/omicverse/external/mofapy2/run 2026-03-27T09:01:17,768 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T09:01:17,770 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-03-27T09:01:17,774 creating build/lib/omicverse/external/mofapy2/simulate 2026-03-27T09:01:17,775 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T09:01:17,777 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-03-27T09:01:17,779 creating build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,780 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,782 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,784 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,787 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,789 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,792 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-03-27T09:01:17,794 creating build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,795 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,798 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,800 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,802 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,804 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-03-27T09:01:17,807 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,808 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,811 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,813 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,815 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,816 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,818 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,821 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,822 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,825 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,844 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,846 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,848 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,855 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,857 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,859 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,876 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,878 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,880 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:17,883 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,884 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,887 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,889 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,891 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,893 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,895 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,921 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,923 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,925 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,927 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,949 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:17,952 creating build/lib/omicverse/external/CAST/model 2026-03-27T09:01:17,953 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-03-27T09:01:17,954 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-03-27T09:01:17,957 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-03-27T09:01:17,959 creating build/lib/omicverse/external/single/arboreto 2026-03-27T09:01:17,961 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T09:01:17,962 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T09:01:17,965 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T09:01:17,966 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-03-27T09:01:17,969 creating build/lib/omicverse/external/nocd/nn 2026-03-27T09:01:17,970 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T09:01:17,973 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T09:01:17,974 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T09:01:17,976 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-03-27T09:01:17,979 creating build/lib/omicverse/external/nocd/metrics 2026-03-27T09:01:17,980 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T09:01:17,982 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T09:01:17,984 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-03-27T09:01:17,986 creating build/lib/omicverse/external/STT/pl 2026-03-27T09:01:17,987 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-03-27T09:01:17,990 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-03-27T09:01:17,992 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-03-27T09:01:17,994 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-03-27T09:01:17,997 creating build/lib/omicverse/external/STT/tl 2026-03-27T09:01:17,998 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-03-27T09:01:18,000 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T09:01:18,002 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-03-27T09:01:18,004 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-03-27T09:01:18,007 creating build/lib/omicverse/external/spaco/external 2026-03-27T09:01:18,008 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-03-27T09:01:18,010 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-03-27T09:01:18,013 creating build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:18,014 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:18,016 creating build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,017 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,019 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,021 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,023 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,026 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:18,029 creating build/lib/omicverse/external/commot/plotting 2026-03-27T09:01:18,030 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T09:01:18,033 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T09:01:18,034 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-03-27T09:01:18,038 creating build/lib/omicverse/external/commot/preprocessing 2026-03-27T09:01:18,038 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T09:01:18,041 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T09:01:18,042 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-03-27T09:01:18,045 creating build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,046 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,049 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,050 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,052 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,055 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-03-27T09:01:18,057 creating build/lib/omicverse/external/commot/tools 2026-03-27T09:01:18,058 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-03-27T09:01:18,060 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-03-27T09:01:18,063 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-03-27T09:01:18,068 creating build/lib/omicverse/external/latentvelo/plotting 2026-03-27T09:01:18,068 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T09:01:18,070 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T09:01:18,073 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-03-27T09:01:18,076 creating build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T09:01:18,077 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T09:01:18,079 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T09:01:18,080 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-03-27T09:01:18,083 creating build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,084 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,086 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,088 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,090 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,092 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-03-27T09:01:18,094 creating build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,095 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,098 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,100 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,102 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,104 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,107 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,110 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,112 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-03-27T09:01:18,115 creating build/lib/omicverse/pp/experimental 2026-03-27T09:01:18,116 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-03-27T09:01:18,118 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-03-27T09:01:18,121 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-03-27T09:01:18,124 creating build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,124 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,127 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,128 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,130 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,132 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,134 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,136 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,138 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-03-27T09:01:18,141 creating build/lib/omicverse/llm/dr 2026-03-27T09:01:18,142 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,144 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,146 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,148 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,150 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,152 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-03-27T09:01:18,154 creating build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,155 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,157 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,160 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,162 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,164 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,166 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-03-27T09:01:18,168 creating build/lib/omicverse/llm/domain_research 2026-03-27T09:01:18,170 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-03-27T09:01:18,172 creating build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,173 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,175 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,177 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,179 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,181 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,183 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-03-27T09:01:18,185 creating build/lib/omicverse/llm/utils 2026-03-27T09:01:18,186 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-03-27T09:01:18,188 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-03-27T09:01:18,190 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-03-27T09:01:18,193 creating build/lib/omicverse/llm/CellPLM 2026-03-27T09:01:18,194 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-03-27T09:01:18,196 creating build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:18,197 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:18,200 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:18,202 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:18,203 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:18,207 creating build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,208 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,211 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,213 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,216 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,218 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,221 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,224 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,228 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,231 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,234 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,237 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,240 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-03-27T09:01:18,243 creating build/lib/omicverse/llm/dr/verify 2026-03-27T09:01:18,244 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-03-27T09:01:18,246 creating build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,247 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,249 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,251 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,253 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,255 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-03-27T09:01:18,257 creating build/lib/omicverse/llm/dr/write 2026-03-27T09:01:18,258 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-03-27T09:01:18,260 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-03-27T09:01:18,262 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-03-27T09:01:18,264 creating build/lib/omicverse/llm/dr/research 2026-03-27T09:01:18,265 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-03-27T09:01:18,267 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-03-27T09:01:18,269 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-03-27T09:01:18,272 creating build/lib/omicverse/llm/dr/retrievers 2026-03-27T09:01:18,272 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T09:01:18,275 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-03-27T09:01:18,278 creating build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,279 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,281 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,283 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,285 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,287 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-03-27T09:01:18,289 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:18,290 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:18,292 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:18,295 creating build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,296 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,298 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,301 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,304 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,305 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,307 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-03-27T09:01:18,311 creating build/lib/omicverse/llm/scgpt/tasks 2026-03-27T09:01:18,312 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T09:01:18,314 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T09:01:18,316 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-03-27T09:01:18,319 creating build/lib/omicverse/llm/scgpt/utils 2026-03-27T09:01:18,320 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T09:01:18,322 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-03-27T09:01:18,324 creating build/lib/omicverse/llm/domain_research/write 2026-03-27T09:01:18,325 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-03-27T09:01:18,328 creating build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T09:01:18,329 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-03-27T09:01:18,331 creating build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,332 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,335 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,337 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,340 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,342 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-03-27T09:01:18,345 creating build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T09:01:18,346 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T09:01:18,348 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T09:01:18,350 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-03-27T09:01:18,352 creating build/lib/omicverse/llm/CellPLM/objective 2026-03-27T09:01:18,353 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T09:01:18,355 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T09:01:18,357 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-03-27T09:01:18,360 creating build/lib/omicverse/llm/CellPLM/latent 2026-03-27T09:01:18,361 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T09:01:18,363 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T09:01:18,365 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T09:01:18,367 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-03-27T09:01:18,370 creating build/lib/omicverse/llm/CellPLM/head 2026-03-27T09:01:18,371 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T09:01:18,373 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-03-27T09:01:18,376 creating build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T09:01:18,377 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T09:01:18,379 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-03-27T09:01:18,381 creating build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T09:01:18,382 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T09:01:18,384 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T09:01:18,386 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-03-27T09:01:18,389 creating build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,390 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,392 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,394 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,396 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,399 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-03-27T09:01:18,401 creating build/lib/omicverse/llm/CellPLM/model 2026-03-27T09:01:18,403 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T09:01:18,404 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-03-27T09:01:18,407 creating build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,408 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,411 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,413 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,415 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,417 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,419 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-03-27T09:01:18,422 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,423 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,425 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,427 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,429 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,432 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:18,434 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,435 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,437 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,439 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,441 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,443 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,445 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,447 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:18,450 creating build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,452 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,454 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,456 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,458 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,460 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,462 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,464 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-03-27T09:01:18,468 creating build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,469 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,471 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,474 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,476 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,479 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,482 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,484 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,486 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,489 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,491 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,494 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,496 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,498 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-03-27T09:01:18,501 creating build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,502 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,504 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,507 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,509 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,511 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,514 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,516 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,519 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,520 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:18,523 creating build/lib/omicverse/utils/harness 2026-03-27T09:01:18,524 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,526 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,528 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,531 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,533 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,535 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,537 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-03-27T09:01:18,541 creating build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,541 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,543 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,546 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,548 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,550 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,552 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,556 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,558 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,560 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,562 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,565 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,568 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,570 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,573 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,575 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,577 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,580 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,582 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,584 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,588 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,591 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,593 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-03-27T09:01:18,596 creating build/lib/omicverse/single/templates 2026-03-27T09:01:18,597 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-03-27T09:01:18,599 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-03-27T09:01:18,601 creating build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,602 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,604 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,606 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,608 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,611 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-03-27T09:01:18,615 running egg_info 2026-03-27T09:01:18,627 writing omicverse.egg-info/PKG-INFO 2026-03-27T09:01:18,645 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-03-27T09:01:18,646 writing entry points to omicverse.egg-info/entry_points.txt 2026-03-27T09:01:18,655 writing requirements to omicverse.egg-info/requires.txt 2026-03-27T09:01:18,657 writing top-level names to omicverse.egg-info/top_level.txt 2026-03-27T09:01:18,846 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:18,908 reading manifest template 'MANIFEST.in' 2026-03-27T09:01:19,871 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-03-27T09:01:21,315 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-03-27T09:01:21,787 warning: no files found matching '*.yml' under directory 'omicverse' 2026-03-27T09:01:26,333 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-03-27T09:01:26,821 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-03-27T09:01:27,291 warning: no files found matching '*.svg' under directory 'omicverse' 2026-03-27T09:01:27,780 warning: no files found matching '*.ico' under directory 'omicverse' 2026-03-27T09:01:28,251 warning: no files found matching '*.db' under directory 'omicverse' 2026-03-27T09:01:28,713 warning: no files found matching '*.npz' under directory 'omicverse' 2026-03-27T09:01:29,187 warning: no files found matching '*.gz' under directory 'omicverse' 2026-03-27T09:01:29,190 no previously-included directories found matching '.git' 2026-03-27T09:01:29,194 no previously-included directories found matching '.github' 2026-03-27T09:01:29,198 no previously-included directories found matching '.claude' 2026-03-27T09:01:29,201 no previously-included directories found matching '.pytest_cache' 2026-03-27T09:01:29,205 no previously-included directories found matching '.ruff_cache' 2026-03-27T09:01:29,208 no previously-included directories found matching '.vscode' 2026-03-27T09:01:29,212 no previously-included directories found matching 'docs' 2026-03-27T09:01:29,216 no previously-included directories found matching 'tests' 2026-03-27T09:01:29,219 no previously-included directories found matching 'OvIntelligence' 2026-03-27T09:01:29,223 no previously-included directories found matching 'READMEM' 2026-03-27T09:01:29,226 no previously-included directories found matching 'omicverse_guide' 2026-03-27T09:01:29,230 no previously-included directories found matching 'omicverse_web' 2026-03-27T09:01:29,233 no previously-included directories found matching 'tmp' 2026-03-27T09:01:29,237 no previously-included directories found matching 'tmp_omicverse' 2026-03-27T09:01:29,241 no previously-included directories found matching 'Skill_Seekers' 2026-03-27T09:01:29,247 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-03-27T09:01:29,256 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-03-27T09:01:29,262 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-03-27T09:01:29,263 adding license file 'LICENSE' 2026-03-27T09:01:29,334 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-03-27T09:01:29,433 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-03-27T09:01:29,436 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-03-27T09:01:29,438 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-03-27T09:01:29,442 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-03-27T09:01:29,445 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-03-27T09:01:29,448 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-03-27T09:01:29,450 copying omicverse/data_files/README.md -> build/lib/omicverse/data_files 2026-03-27T09:01:29,453 copying omicverse/data_files/features_model_training_17.csv -> build/lib/omicverse/data_files 2026-03-27T09:01:29,458 copying omicverse/data_files/human_alias_list.txt -> build/lib/omicverse/data_files 2026-03-27T09:01:29,461 copying omicverse/data_files/mart_export.txt -> build/lib/omicverse/data_files 2026-03-27T09:01:29,541 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-03-27T09:01:29,543 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-03-27T09:01:29,546 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-03-27T09:01:29,549 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-03-27T09:01:29,552 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:30,219 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:30,245 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-03-27T09:01:30,247 creating build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,248 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,251 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,254 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,257 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,260 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,263 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,266 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,269 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,272 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,275 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,277 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,280 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-03-27T09:01:30,283 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:30,288 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:30,289 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:30,376 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:30,381 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:30,387 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:30,388 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:30,395 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:30,403 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:30,411 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:30,412 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:30,429 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:30,447 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:30,465 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:30,468 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:30,470 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:30,473 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-03-27T09:01:30,476 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:30,478 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:30,481 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:30,485 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:30,486 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:30,490 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:30,494 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:30,500 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:30,507 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:30,509 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:30,513 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-03-27T09:01:30,515 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:30,551 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:30,569 creating build/lib/omicverse/llm/scfoundation/models 2026-03-27T09:01:30,570 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-03-27T09:01:30,572 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-03-27T09:01:30,575 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-03-27T09:01:30,578 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-03-27T09:01:30,580 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-03-27T09:01:30,584 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-03-27T09:01:30,587 creating build/lib/omicverse/single/templates/img 2026-03-27T09:01:30,589 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-03-27T09:01:30,591 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T09:01:30,594 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T09:01:30,598 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-03-27T09:01:30,601 creating build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,602 copying omicverse/data_files/TF/allTFs_human.txt -> build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,605 copying omicverse/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,608 copying omicverse/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,619 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,635 copying omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/data_files/TF 2026-03-27T09:01:30,757 installing to build/bdist.linux-armv7l/wheel 2026-03-27T09:01:30,758 running install 2026-03-27T09:01:30,782 running install_lib 2026-03-27T09:01:30,791 creating build/bdist.linux-armv7l/wheel 2026-03-27T09:01:30,794 creating build/bdist.linux-armv7l/wheel/omicverse 2026-03-27T09:01:30,795 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:30,798 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:30,801 creating build/bdist.linux-armv7l/wheel/omicverse/popv 2026-03-27T09:01:30,803 copying build/lib/omicverse/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,806 creating build/bdist.linux-armv7l/wheel/omicverse/popv/algorithms 2026-03-27T09:01:30,807 copying build/lib/omicverse/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,809 copying build/lib/omicverse/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,812 copying build/lib/omicverse/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,814 copying build/lib/omicverse/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,816 copying build/lib/omicverse/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,818 copying build/lib/omicverse/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,821 copying build/lib/omicverse/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,823 copying build/lib/omicverse/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,826 copying build/lib/omicverse/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,828 copying build/lib/omicverse/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,831 copying build/lib/omicverse/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,834 copying build/lib/omicverse/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/algorithms 2026-03-27T09:01:30,836 copying build/lib/omicverse/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,839 copying build/lib/omicverse/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,842 copying build/lib/omicverse/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,844 copying build/lib/omicverse/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,847 creating build/bdist.linux-armv7l/wheel/omicverse/popv/hub 2026-03-27T09:01:30,849 copying build/lib/omicverse/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T09:01:30,851 copying build/lib/omicverse/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T09:01:30,854 copying build/lib/omicverse/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T09:01:30,856 copying build/lib/omicverse/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T09:01:30,859 copying build/lib/omicverse/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv/hub 2026-03-27T09:01:30,861 copying build/lib/omicverse/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/popv 2026-03-27T09:01:30,864 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:30,867 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-03-27T09:01:30,868 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-03-27T09:01:30,871 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-03-27T09:01:30,872 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-03-27T09:01:30,875 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-03-27T09:01:30,877 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T09:01:30,879 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T09:01:30,882 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T09:01:30,885 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-03-27T09:01:30,888 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-03-27T09:01:30,889 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T09:01:30,892 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T09:01:30,894 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T09:01:30,897 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-03-27T09:01:30,900 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-03-27T09:01:30,901 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T09:01:30,904 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T09:01:30,906 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-03-27T09:01:30,908 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-03-27T09:01:30,910 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,913 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,914 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,917 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,920 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,923 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,925 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,929 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,932 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,934 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,936 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,940 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,943 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,946 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-03-27T09:01:30,950 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-03-27T09:01:30,951 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,954 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,957 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-03-27T09:01:30,958 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T09:01:30,960 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-03-27T09:01:30,963 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,965 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,968 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,970 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,973 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:30,977 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-03-27T09:01:30,979 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,981 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,985 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,987 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,990 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,992 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,995 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-03-27T09:01:30,998 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,002 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-03-27T09:01:31,004 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,007 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,010 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,015 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,020 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,025 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,028 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-03-27T09:01:31,032 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,036 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,038 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,042 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,045 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,050 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,054 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,057 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,061 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-03-27T09:01:31,062 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T09:01:31,066 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T09:01:31,069 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-03-27T09:01:31,072 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,075 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-03-27T09:01:31,077 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:31,081 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-03-27T09:01:31,082 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,085 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-03-27T09:01:31,086 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-03-27T09:01:31,089 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,091 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,094 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,096 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,113 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,115 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,118 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,121 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,123 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,126 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-03-27T09:01:31,130 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-03-27T09:01:31,131 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-03-27T09:01:31,132 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,134 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,137 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,139 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,141 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,143 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-03-27T09:01:31,146 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,147 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,149 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,151 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,153 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,155 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-03-27T09:01:31,157 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-03-27T09:01:31,161 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-03-27T09:01:31,162 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T09:01:31,164 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-03-27T09:01:31,165 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T09:01:31,167 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T09:01:31,170 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-03-27T09:01:31,172 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-03-27T09:01:31,173 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,175 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,177 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:31,178 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:31,180 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-03-27T09:01:31,182 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,184 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,186 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,188 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,191 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:31,192 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:31,194 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:31,196 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-03-27T09:01:31,199 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,201 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-03-27T09:01:31,203 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T09:01:31,205 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-03-27T09:01:31,208 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-03-27T09:01:31,209 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T09:01:31,211 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T09:01:31,213 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-03-27T09:01:31,216 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-03-27T09:01:31,217 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,219 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,221 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,223 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,226 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,229 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,231 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,234 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,236 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,239 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-03-27T09:01:31,241 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-03-27T09:01:31,242 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T09:01:31,244 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-03-27T09:01:31,250 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-03-27T09:01:31,251 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T09:01:31,253 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T09:01:31,255 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-03-27T09:01:31,257 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T09:01:31,259 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-03-27T09:01:31,261 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-03-27T09:01:31,265 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-03-27T09:01:31,266 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T09:01:31,268 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-03-27T09:01:31,271 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-03-27T09:01:31,272 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:31,273 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:31,308 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:32,216 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-03-27T09:01:32,219 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-03-27T09:01:32,221 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,223 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,225 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,228 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,231 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,233 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,236 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,239 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,241 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,244 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,246 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,249 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,251 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,254 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,256 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-03-27T09:01:32,259 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-03-27T09:01:32,261 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,263 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,265 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,267 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,270 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,272 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,274 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,276 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,278 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,282 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,284 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,286 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,289 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,292 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,295 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,297 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,300 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,302 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,304 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-03-27T09:01:32,306 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T09:01:32,309 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-03-27T09:01:32,310 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T09:01:32,312 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T09:01:32,315 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-03-27T09:01:32,317 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T09:01:32,320 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T09:01:32,322 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-03-27T09:01:32,325 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-03-27T09:01:32,327 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-03-27T09:01:32,329 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T09:01:32,332 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:32,333 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:32,335 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:32,338 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:32,340 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-03-27T09:01:32,343 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:32,344 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:32,346 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-03-27T09:01:32,349 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-03-27T09:01:32,352 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,353 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,355 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,358 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,360 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,363 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-03-27T09:01:32,366 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-03-27T09:01:32,367 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T09:01:32,371 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T09:01:32,373 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-03-27T09:01:32,376 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-03-27T09:01:32,377 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T09:01:32,379 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T09:01:32,381 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-03-27T09:01:32,384 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,385 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,387 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,389 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,391 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,393 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,396 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,398 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,399 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-03-27T09:01:32,402 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-03-27T09:01:32,403 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,406 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:32,407 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:32,408 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:32,411 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-03-27T09:01:32,413 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,415 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,418 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,421 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,424 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-03-27T09:01:32,426 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,427 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,430 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,432 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,434 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,436 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-03-27T09:01:32,439 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:32,440 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:32,442 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:32,444 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-03-27T09:01:32,447 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:32,448 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:32,450 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:32,453 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-03-27T09:01:32,456 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-03-27T09:01:32,457 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T09:01:32,459 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T09:01:32,461 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T09:01:32,463 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-03-27T09:01:32,466 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-03-27T09:01:32,467 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,469 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,471 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,473 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,475 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,477 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,479 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-03-27T09:01:32,481 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-03-27T09:01:32,482 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,484 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,486 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,488 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,491 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,493 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-03-27T09:01:32,496 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-03-27T09:01:32,497 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T09:01:32,499 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T09:01:32,501 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-03-27T09:01:32,504 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-03-27T09:01:32,505 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,507 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,508 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,511 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,513 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,515 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,517 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-03-27T09:01:32,520 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-03-27T09:01:32,521 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T09:01:32,523 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T09:01:32,525 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-03-27T09:01:32,527 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-03-27T09:01:32,528 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-03-27T09:01:32,531 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-03-27T09:01:32,532 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T09:01:32,534 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-03-27T09:01:32,536 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,537 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,539 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,541 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,544 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,546 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,548 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-03-27T09:01:32,551 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-03-27T09:01:32,552 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T09:01:32,554 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-03-27T09:01:32,556 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-03-27T09:01:32,557 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T09:01:32,559 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T09:01:32,562 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T09:01:32,564 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-03-27T09:01:32,567 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-03-27T09:01:32,568 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T09:01:32,571 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-03-27T09:01:32,572 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,574 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,577 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,578 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,581 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,583 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,585 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,588 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,590 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,593 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,595 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,597 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,600 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,602 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,605 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,607 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,609 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,611 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,613 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,616 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,618 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,620 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-03-27T09:01:32,623 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-03-27T09:01:32,624 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T09:01:32,626 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-03-27T09:01:32,628 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-03-27T09:01:32,630 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,632 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,634 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,637 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,639 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,641 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,644 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,646 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,648 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,651 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,653 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,656 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-03-27T09:01:32,658 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T09:01:32,661 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T09:01:32,663 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T09:01:32,665 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-03-27T09:01:32,669 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-03-27T09:01:32,670 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,672 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,674 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,676 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,678 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,680 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,683 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,684 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,686 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,688 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,691 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,693 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,695 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,697 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-03-27T09:01:32,699 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,702 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,704 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,706 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,708 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,710 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,713 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,715 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,717 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,719 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,721 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,723 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,726 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,728 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,730 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,732 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,734 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,737 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,739 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,740 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,742 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,745 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,747 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,749 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,752 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,754 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,756 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-03-27T09:01:32,758 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,761 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,763 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,766 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-03-27T09:01:32,767 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T09:01:32,769 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T09:01:32,771 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T09:01:32,773 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-03-27T09:01:32,775 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,778 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,780 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,782 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,784 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,786 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,789 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,790 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,792 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,794 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,797 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,799 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,801 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-03-27T09:01:32,804 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-03-27T09:01:32,807 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,808 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,810 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,812 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,815 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,817 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,819 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,822 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,824 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,826 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-03-27T09:01:32,829 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-03-27T09:01:32,830 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,832 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,834 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,836 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,839 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,841 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-03-27T09:01:32,844 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-03-27T09:01:32,845 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T09:01:32,847 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T09:01:32,849 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T09:01:32,851 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T09:01:32,854 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-03-27T09:01:32,857 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-03-27T09:01:32,858 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,860 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,862 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,864 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,865 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,867 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,869 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,871 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,874 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,876 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,878 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,880 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,882 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,885 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,886 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,888 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-03-27T09:01:32,890 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-03-27T09:01:32,891 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-03-27T09:01:32,894 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,894 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,897 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,899 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,901 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,903 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-03-27T09:01:32,906 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,907 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,909 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,912 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,915 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,920 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,923 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,926 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,928 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,931 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,934 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,937 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-03-27T09:01:32,939 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:32,940 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:32,942 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:32,943 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:32,948 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:32,955 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-03-27T09:01:33,057 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,059 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,061 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,063 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,066 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,068 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,071 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,073 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,075 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,077 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,079 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-03-27T09:01:33,082 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-03-27T09:01:33,083 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,085 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,087 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,089 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,091 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,093 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-03-27T09:01:33,097 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-03-27T09:01:33,098 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T09:01:33,100 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T09:01:33,102 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-03-27T09:01:33,105 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-03-27T09:01:33,106 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,109 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,111 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,113 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,116 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,118 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,121 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,123 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,125 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-03-27T09:01:33,128 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-03-27T09:01:33,129 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T09:01:33,132 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T09:01:33,133 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T09:01:33,136 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-03-27T09:01:33,138 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-03-27T09:01:33,139 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,142 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,144 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,146 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,148 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,150 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,152 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,154 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,155 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,157 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,159 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,162 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,164 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,166 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,169 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,170 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,173 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,175 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,177 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,179 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,182 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,184 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-03-27T09:01:33,187 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-03-27T09:01:33,188 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T09:01:33,190 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T09:01:33,193 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-03-27T09:01:33,194 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T09:01:33,196 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-03-27T09:01:33,201 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:33,203 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:33,205 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:33,261 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:33,298 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-03-27T09:01:33,314 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:33,321 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:33,328 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-03-27T09:01:33,335 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-03-27T09:01:33,337 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-03-27T09:01:33,338 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T09:01:33,340 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-03-27T09:01:33,343 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,344 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,345 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,347 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,350 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,353 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,355 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-03-27T09:01:33,357 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-03-27T09:01:33,358 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T09:01:33,361 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T09:01:33,364 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,365 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,367 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,370 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,372 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,374 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,376 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,379 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,381 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,384 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,387 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,390 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,392 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,396 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,398 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,401 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,403 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,405 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,408 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-03-27T09:01:33,411 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T09:01:33,414 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,415 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,418 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,420 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,422 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,424 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,426 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,429 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,432 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,434 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,436 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,439 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-03-27T09:01:33,441 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T09:01:33,444 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-03-27T09:01:33,446 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-03-27T09:01:33,447 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,450 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,452 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,455 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,457 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,459 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,462 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,464 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,466 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,468 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,471 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,473 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,476 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-03-27T09:01:33,479 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-03-27T09:01:33,480 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T09:01:33,484 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-03-27T09:01:33,488 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-03-27T09:01:33,489 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,492 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,495 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,497 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,502 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,504 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,507 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,509 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-03-27T09:01:33,512 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-03-27T09:01:33,514 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,517 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,520 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,522 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,525 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,528 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,530 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,534 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-03-27T09:01:33,538 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-03-27T09:01:33,539 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,541 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,544 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,547 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,550 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-03-27T09:01:33,552 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T09:01:33,554 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T09:01:33,556 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-03-27T09:01:33,558 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,561 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,564 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-03-27T09:01:33,568 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-03-27T09:01:33,569 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T09:01:33,571 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T09:01:33,574 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T09:01:33,577 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T09:01:33,580 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-03-27T09:01:33,583 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-03-27T09:01:33,585 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T09:01:33,587 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T09:01:33,590 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-03-27T09:01:33,593 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-03-27T09:01:33,594 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,597 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,599 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,601 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,603 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,606 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-03-27T09:01:33,609 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-03-27T09:01:33,610 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T09:01:33,612 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T09:01:33,618 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T09:01:33,621 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T09:01:33,624 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-03-27T09:01:33,627 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-03-27T09:01:33,628 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T09:01:33,631 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T09:01:33,633 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T09:01:33,635 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T09:01:33,637 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-03-27T09:01:33,640 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-03-27T09:01:33,642 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,644 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,646 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,649 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,652 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,654 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,657 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-03-27T09:01:33,661 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-03-27T09:01:33,662 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,664 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,666 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,669 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,671 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,674 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,676 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-03-27T09:01:33,679 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-03-27T09:01:33,680 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T09:01:33,683 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T09:01:33,685 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-03-27T09:01:33,689 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-03-27T09:01:33,691 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-03-27T09:01:33,692 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T09:01:33,694 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T09:01:33,697 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T09:01:33,699 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-03-27T09:01:33,702 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-03-27T09:01:33,703 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,705 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,708 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,710 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,713 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,715 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,718 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,722 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,724 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,727 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,730 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-03-27T09:01:33,732 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-03-27T09:01:33,734 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,736 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,738 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,741 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-03-27T09:01:33,742 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T09:01:33,744 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T09:01:33,746 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T09:01:33,749 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-03-27T09:01:33,751 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-03-27T09:01:33,753 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T09:01:33,755 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T09:01:33,757 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-03-27T09:01:33,759 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,761 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,764 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-03-27T09:01:33,767 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-03-27T09:01:33,768 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-03-27T09:01:33,771 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-03-27T09:01:33,772 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T09:01:33,775 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T09:01:33,777 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T09:01:33,779 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-03-27T09:01:33,782 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-03-27T09:01:33,784 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T09:01:33,786 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T09:01:33,788 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T09:01:33,791 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-03-27T09:01:33,794 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-03-27T09:01:33,796 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T09:01:33,798 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T09:01:33,801 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T09:01:33,804 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T09:01:33,806 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-03-27T09:01:33,809 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-03-27T09:01:33,810 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,812 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,814 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,817 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,820 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-03-27T09:01:33,821 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T09:01:33,823 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-03-27T09:01:33,826 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,828 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,830 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,832 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,834 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-03-27T09:01:33,838 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-03-27T09:01:33,839 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,841 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,843 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,846 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,848 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,851 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,854 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,856 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,859 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,861 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,863 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,866 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-03-27T09:01:33,869 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-03-27T09:01:33,870 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,872 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,875 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,878 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,880 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,883 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-03-27T09:01:33,885 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T09:01:33,887 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T09:01:33,890 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T09:01:33,892 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T09:01:33,895 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-03-27T09:01:33,897 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,900 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,903 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,905 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-03-27T09:01:33,908 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-03-27T09:01:33,910 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,912 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,914 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,917 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,919 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,922 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,924 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,927 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,929 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,932 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,934 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-03-27T09:01:33,938 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-03-27T09:01:33,939 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T09:01:33,941 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T09:01:33,944 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-03-27T09:01:33,947 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-03-27T09:01:33,949 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,951 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,953 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,956 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,959 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,961 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,965 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,968 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,970 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-03-27T09:01:33,974 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-03-27T09:01:33,975 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-03-27T09:01:33,978 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,979 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,981 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,983 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,986 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,989 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-03-27T09:01:33,993 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-03-27T09:01:33,994 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T09:01:33,997 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T09:01:33,999 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-03-27T09:01:34,003 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-03-27T09:01:34,004 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T09:01:34,007 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T09:01:34,009 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-03-27T09:01:34,011 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-03-27T09:01:34,013 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:34,015 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:34,018 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:34,024 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-03-27T09:01:34,028 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:34,029 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:34,033 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-03-27T09:01:34,037 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-03-27T09:01:34,040 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-03-27T09:01:34,041 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T09:01:34,045 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T09:01:34,047 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T09:01:34,049 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T09:01:34,052 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-03-27T09:01:34,054 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-03-27T09:01:34,055 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T09:01:34,058 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T09:01:34,062 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-03-27T09:01:34,066 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-03-27T09:01:34,067 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,070 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,072 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,075 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,077 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,080 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,083 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,085 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,087 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,089 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,092 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-03-27T09:01:34,093 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T09:01:34,096 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T09:01:34,098 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-03-27T09:01:34,101 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,103 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,106 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,109 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-03-27T09:01:34,110 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T09:01:34,113 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T09:01:34,115 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-03-27T09:01:34,118 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,120 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,123 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-03-27T09:01:34,125 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T09:01:34,127 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T09:01:34,130 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T09:01:34,132 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T09:01:34,134 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-03-27T09:01:34,136 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,138 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,141 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,143 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,146 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-03-27T09:01:34,147 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,150 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,153 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,155 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,158 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,160 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,164 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,166 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-03-27T09:01:34,170 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,173 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-03-27T09:01:34,175 creating build/bdist.linux-armv7l/wheel/omicverse/external/scrublet 2026-03-27T09:01:34,177 copying build/lib/omicverse/external/scrublet/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T09:01:34,179 copying build/lib/omicverse/external/scrublet/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T09:01:34,182 copying build/lib/omicverse/external/scrublet/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scrublet 2026-03-27T09:01:34,185 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-03-27T09:01:34,187 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,189 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,194 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,196 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,204 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,210 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,216 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-03-27T09:01:34,219 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-03-27T09:01:34,220 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,223 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,225 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,228 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,231 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,234 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,237 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,240 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,242 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,245 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-03-27T09:01:34,248 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-03-27T09:01:34,250 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,252 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,254 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,257 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,259 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,263 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,266 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,268 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,271 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,275 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,278 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,280 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,282 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,285 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,288 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-03-27T09:01:34,289 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T09:01:34,291 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T09:01:34,293 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-03-27T09:01:34,295 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,298 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,300 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,303 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,305 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,307 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,309 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,312 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,315 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-03-27T09:01:34,318 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-03-27T09:01:34,319 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,322 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,324 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,330 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,332 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,335 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,338 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,341 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,343 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,347 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,350 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,352 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,355 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,358 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,360 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,363 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,366 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,369 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,372 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,374 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-03-27T09:01:34,383 creating build/bdist.linux-armv7l/wheel/omicverse/biocontext 2026-03-27T09:01:34,384 copying build/lib/omicverse/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T09:01:34,386 copying build/lib/omicverse/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T09:01:34,388 copying build/lib/omicverse/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/biocontext 2026-03-27T09:01:34,391 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-03-27T09:01:34,392 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,396 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,397 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,400 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,402 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,405 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,407 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,409 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,411 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-03-27T09:01:34,413 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:34,416 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-03-27T09:01:34,417 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T09:01:34,419 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T09:01:34,422 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-03-27T09:01:34,424 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:34,427 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-03-27T09:01:34,428 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T09:01:34,430 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T09:01:34,433 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-03-27T09:01:34,434 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,436 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,438 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,440 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,441 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,443 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,445 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,447 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-03-27T09:01:34,450 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T09:01:34,453 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T09:01:34,455 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-03-27T09:01:34,458 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-03-27T09:01:34,459 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,461 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,463 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,466 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,471 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-03-27T09:01:34,472 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-03-27T09:01:34,473 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-03-27T09:01:34,476 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,477 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,479 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,482 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,483 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,485 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-03-27T09:01:34,486 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T09:01:34,488 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T09:01:34,490 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T09:01:34,492 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T09:01:34,494 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-03-27T09:01:34,496 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-03-27T09:01:34,497 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T09:01:34,499 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T09:01:34,501 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-03-27T09:01:34,504 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-03-27T09:01:34,505 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T09:01:34,507 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T09:01:34,509 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-03-27T09:01:34,511 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-03-27T09:01:34,513 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-03-27T09:01:34,514 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T09:01:34,516 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-03-27T09:01:34,519 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-03-27T09:01:34,521 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,522 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,525 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,527 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,528 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,530 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,532 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,535 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,537 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-03-27T09:01:34,539 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:34,540 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:34,542 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:34,563 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:34,565 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-03-27T09:01:34,582 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-03-27T09:01:34,583 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,585 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,588 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,590 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,592 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,593 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-03-27T09:01:34,597 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-03-27T09:01:34,598 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T09:01:34,600 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T09:01:34,602 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-03-27T09:01:34,604 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,606 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-03-27T09:01:34,607 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T09:01:34,609 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-03-27T09:01:34,612 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,614 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-03-27T09:01:34,617 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,620 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-03-27T09:01:34,621 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-03-27T09:01:34,623 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-03-27T09:01:34,624 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-03-27T09:01:34,626 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-03-27T09:01:34,627 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-03-27T09:01:34,629 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,632 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,635 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,639 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,641 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,644 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-03-27T09:01:34,645 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,646 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,648 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,651 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,652 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,654 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,656 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,658 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,660 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-03-27T09:01:34,663 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,665 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,667 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-03-27T09:01:34,670 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-03-27T09:01:34,671 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T09:01:34,672 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T09:01:34,675 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-03-27T09:01:34,678 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,682 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-03-27T09:01:34,683 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-03-27T09:01:34,685 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-03-27T09:01:34,686 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T09:01:34,688 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T09:01:34,690 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-03-27T09:01:34,692 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-03-27T09:01:34,693 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T09:01:34,695 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T09:01:34,697 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-03-27T09:01:34,700 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-03-27T09:01:34,701 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T09:01:34,703 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T09:01:34,705 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T09:01:34,708 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-03-27T09:01:34,711 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-03-27T09:01:34,712 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T09:01:34,714 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-03-27T09:01:34,718 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-03-27T09:01:34,720 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T09:01:34,722 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-03-27T09:01:34,725 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-03-27T09:01:34,726 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T09:01:34,728 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T09:01:34,731 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-03-27T09:01:34,734 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,735 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,737 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,741 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,743 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,746 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-03-27T09:01:34,750 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-03-27T09:01:34,752 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T09:01:34,754 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-03-27T09:01:34,757 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,759 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,762 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,764 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,767 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,769 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,772 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-03-27T09:01:34,776 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,778 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,781 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,784 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,787 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,791 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-03-27T09:01:34,794 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-03-27T09:01:34,796 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,799 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,802 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,804 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,806 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,812 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,815 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,817 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,819 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,822 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,824 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,826 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,828 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,831 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-03-27T09:01:34,834 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,836 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-03-27T09:01:34,840 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-03-27T09:01:34,841 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-03-27T09:01:34,843 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-03-27T09:01:34,848 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-03-27T09:01:34,850 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,854 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,856 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,858 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,862 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,863 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,866 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,868 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,870 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,872 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,875 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,878 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-03-27T09:01:34,881 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,884 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,887 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,891 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,894 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,897 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,900 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,903 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-03-27T09:01:34,906 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-03-27T09:01:34,910 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-03-27T09:01:34,911 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,914 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,917 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,919 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,923 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-03-27T09:01:34,924 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,927 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,930 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,933 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,936 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,939 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,941 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,944 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,947 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,950 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,953 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,955 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,958 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-03-27T09:01:34,961 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,964 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,967 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,969 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,974 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,977 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,980 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,982 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,984 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,987 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,989 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,992 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:34,996 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-03-27T09:01:34,997 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:34,999 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,002 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,005 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,008 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,011 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,014 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,017 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,020 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,022 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-03-27T09:01:35,024 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,028 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,030 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,033 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,035 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,037 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,040 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,045 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-03-27T09:01:35,047 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,049 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,052 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,055 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,057 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,060 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,062 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-03-27T09:01:35,066 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,069 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,072 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-03-27T09:01:35,073 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,076 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,079 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,083 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,085 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,088 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,092 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,095 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,097 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,100 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,103 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,107 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,109 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,112 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,114 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,117 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,120 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,122 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,125 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,131 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,133 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,136 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-03-27T09:01:35,139 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,143 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,146 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,150 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,153 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,156 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,160 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,163 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,166 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,169 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-03-27T09:01:35,173 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-03-27T09:01:35,174 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,183 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,186 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,189 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,192 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,195 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,196 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,198 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,201 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,204 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,207 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,209 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,212 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,215 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,217 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,220 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,223 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,228 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,231 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,234 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,236 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,239 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,242 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,245 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-03-27T09:01:35,246 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,249 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,251 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,253 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-03-27T09:01:35,254 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T09:01:35,258 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T09:01:35,259 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T09:01:35,262 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-03-27T09:01:35,265 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,268 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,270 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-03-27T09:01:35,272 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,274 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,277 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,279 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,282 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,284 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,286 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,289 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,293 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,295 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,299 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,301 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,304 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,308 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,312 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,315 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,319 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,323 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,328 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,331 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,333 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,336 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-03-27T09:01:35,339 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-03-27T09:01:35,340 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,342 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,345 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,347 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-03-27T09:01:35,348 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T09:01:35,350 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T09:01:35,353 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T09:01:35,355 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T09:01:35,357 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-03-27T09:01:35,360 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,363 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,366 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,370 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,372 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,376 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,378 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,380 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,383 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,385 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-03-27T09:01:35,388 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-03-27T09:01:35,389 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,391 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,393 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,396 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,398 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,400 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,403 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,404 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,406 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,408 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-03-27T09:01:35,411 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-03-27T09:01:35,412 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-03-27T09:01:35,415 creating build/bdist.linux-armv7l/wheel/omicverse/data_files 2026-03-27T09:01:35,416 copying build/lib/omicverse/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T09:01:35,419 copying build/lib/omicverse/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T09:01:35,421 creating build/bdist.linux-armv7l/wheel/omicverse/data_files/TF 2026-03-27T09:01:35,422 copying build/lib/omicverse/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T09:01:35,425 copying build/lib/omicverse/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T09:01:35,427 copying build/lib/omicverse/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T09:01:35,438 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T09:01:35,453 copying build/lib/omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files/TF 2026-03-27T09:01:35,467 copying build/lib/omicverse/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T09:01:35,549 copying build/lib/omicverse/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T09:01:35,556 copying build/lib/omicverse/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/data_files 2026-03-27T09:01:35,558 running install_egg_info 2026-03-27T09:01:35,566 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.1.1rc1-py3.11.egg-info 2026-03-27T09:01:35,584 running install_scripts 2026-03-27T09:01:35,601 creating build/bdist.linux-armv7l/wheel/omicverse-2.1.1rc1.dist-info/WHEEL 2026-03-27T09:01:35,604 creating '/tmp/pip-wheel-l2cdpzbz/.tmp-uwut3s5j/omicverse-2.1.1rc1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-03-27T09:01:35,609 adding 'omicverse/__init__.py' 2026-03-27T09:01:35,611 adding 'omicverse/_lazy_loader.py' 2026-03-27T09:01:35,613 adding 'omicverse/_monitor.py' 2026-03-27T09:01:35,619 adding 'omicverse/_registry.py' 2026-03-27T09:01:35,624 adding 'omicverse/_settings.py' 2026-03-27T09:01:35,627 adding 'omicverse/claw.py' 2026-03-27T09:01:35,629 adding 'omicverse/cli.py' 2026-03-27T09:01:35,631 adding 'omicverse/agent/__init__.py' 2026-03-27T09:01:35,634 adding 'omicverse/alignment/STAR.py' 2026-03-27T09:01:35,635 adding 'omicverse/alignment/__init__.py' 2026-03-27T09:01:35,637 adding 'omicverse/alignment/_cli_utils.py' 2026-03-27T09:01:35,638 adding 'omicverse/alignment/fastp.py' 2026-03-27T09:01:35,641 adding 'omicverse/alignment/featureCount.py' 2026-03-27T09:01:35,643 adding 'omicverse/alignment/fq_dump.py' 2026-03-27T09:01:35,647 adding 'omicverse/alignment/kb_api.py' 2026-03-27T09:01:35,649 adding 'omicverse/alignment/pipeline.py' 2026-03-27T09:01:35,650 adding 'omicverse/alignment/prefetch.py' 2026-03-27T09:01:35,652 adding 'omicverse/biocontext/__init__.py' 2026-03-27T09:01:35,654 adding 'omicverse/biocontext/_client.py' 2026-03-27T09:01:35,656 adding 'omicverse/biocontext/_tools.py' 2026-03-27T09:01:35,661 adding 'omicverse/bulk/_Deseq2.py' 2026-03-27T09:01:35,665 adding 'omicverse/bulk/_Enrichment.py' 2026-03-27T09:01:35,668 adding 'omicverse/bulk/_Gene_module.py' 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adding 'omicverse/bulk2single/_scsemi.py' 2026-03-27T09:01:35,753 adding 'omicverse/bulk2single/_single2spatial.py' 2026-03-27T09:01:35,756 adding 'omicverse/bulk2single/_utils.py' 2026-03-27T09:01:35,758 adding 'omicverse/bulk2single/_vae.py' 2026-03-27T09:01:35,760 adding 'omicverse/data_files/README.md' 2026-03-27T09:01:35,801 adding 'omicverse/data_files/features_model_training_17.csv' 2026-03-27T09:01:35,803 adding 'omicverse/data_files/human_alias_list.txt' 2026-03-27T09:01:36,323 adding 'omicverse/data_files/mart_export.txt' 2026-03-27T09:01:36,355 adding 'omicverse/data_files/smoothDatakNN.py' 2026-03-27T09:01:36,358 adding 'omicverse/data_files/TF/allTFs_human.txt' 2026-03-27T09:01:36,361 adding 'omicverse/data_files/TF/allTFs_mouse.txt' 2026-03-27T09:01:36,384 adding 'omicverse/data_files/TF/allTFs_zebrafish.txt' 2026-03-27T09:01:36,426 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-03-27T09:01:36,467 adding 'omicverse/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-03-27T09:01:36,472 adding 'omicverse/datasets/__init__.py' 2026-03-27T09:01:36,478 adding 'omicverse/datasets/_datasets.py' 2026-03-27T09:01:36,480 adding 'omicverse/datasets/_signatures.py' 2026-03-27T09:01:36,483 adding 'omicverse/external/__init__.py' 2026-03-27T09:01:36,485 adding 'omicverse/external/BINARY/Model.py' 2026-03-27T09:01:36,486 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-03-27T09:01:36,487 adding 'omicverse/external/BINARY/__init__.py' 2026-03-27T09:01:36,490 adding 'omicverse/external/BINARY/utils.py' 2026-03-27T09:01:36,492 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-03-27T09:01:36,495 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-03-27T09:01:36,498 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-03-27T09:01:36,500 adding 'omicverse/external/CAST/__init__.py' 2026-03-27T09:01:36,502 adding 'omicverse/external/CAST/main.py' 2026-03-27T09:01:36,505 adding 'omicverse/external/CAST/utils.py' 2026-03-27T09:01:36,506 adding 'omicverse/external/CAST/visualize.py' 2026-03-27T09:01:36,508 adding 'omicverse/external/CAST/model/__init__.py' 2026-03-27T09:01:36,509 adding 'omicverse/external/CAST/model/aug.py' 2026-03-27T09:01:36,511 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-03-27T09:01:36,513 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-03-27T09:01:36,514 adding 'omicverse/external/CEFCON/__init__.py' 2026-03-27T09:01:36,515 adding 'omicverse/external/CEFCON/_aucell.py' 2026-03-27T09:01:36,518 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-03-27T09:01:36,521 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-03-27T09:01:36,523 adding 'omicverse/external/CEFCON/datasets.py' 2026-03-27T09:01:36,525 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-03-27T09:01:36,527 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-03-27T09:01:36,530 adding 'omicverse/external/CEFCON/utils.py' 2026-03-27T09:01:36,532 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-03-27T09:01:36,534 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-03-27T09:01:36,536 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-03-27T09:01:36,539 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-03-27T09:01:36,541 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-03-27T09:01:36,543 adding 'omicverse/external/GNTD/_GNTD.py' 2026-03-27T09:01:36,545 adding 'omicverse/external/GNTD/_NTD.py' 2026-03-27T09:01:36,547 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-03-27T09:01:36,548 adding 'omicverse/external/GNTD/_utils.py' 2026-03-27T09:01:36,551 adding 'omicverse/external/GraphST/GraphST.py' 2026-03-27T09:01:36,552 adding 'omicverse/external/GraphST/__init__.py' 2026-03-27T09:01:36,554 adding 'omicverse/external/GraphST/model.py' 2026-03-27T09:01:36,555 adding 'omicverse/external/GraphST/preprocess.py' 2026-03-27T09:01:36,557 adding 'omicverse/external/GraphST/readme.txt' 2026-03-27T09:01:36,558 adding 'omicverse/external/GraphST/utils.py' 2026-03-27T09:01:36,560 adding 'omicverse/external/NaiveDE/__init__.py' 2026-03-27T09:01:36,562 adding 'omicverse/external/NaiveDE/base.py' 2026-03-27T09:01:36,563 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-03-27T09:01:36,565 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-03-27T09:01:36,566 adding 'omicverse/external/NaiveDE/impulse.py' 2026-03-27T09:01:36,567 adding 'omicverse/external/NaiveDE/loom.py' 2026-03-27T09:01:36,568 adding 'omicverse/external/NaiveDE/simulate.py' 2026-03-27T09:01:36,571 adding 'omicverse/external/PROST/PROST.py' 2026-03-27T09:01:36,572 adding 'omicverse/external/PROST/__init__.py' 2026-03-27T09:01:36,574 adding 'omicverse/external/PROST/calculate_PI.py' 2026-03-27T09:01:36,576 adding 'omicverse/external/PROST/layers.py' 2026-03-27T09:01:36,577 adding 'omicverse/external/PROST/model.py' 2026-03-27T09:01:36,579 adding 'omicverse/external/PROST/plot.py' 2026-03-27T09:01:36,582 adding 'omicverse/external/PROST/utils.py' 2026-03-27T09:01:36,584 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-03-27T09:01:36,586 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-03-27T09:01:36,588 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-03-27T09:01:36,590 adding 'omicverse/external/PyWGCNA/utils.py' 2026-03-27T09:01:36,613 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-03-27T09:01:36,616 adding 'omicverse/external/SEACells/__init__.py' 2026-03-27T09:01:36,618 adding 'omicverse/external/SEACells/accessibility.py' 2026-03-27T09:01:36,619 adding 'omicverse/external/SEACells/build_graph.py' 2026-03-27T09:01:36,621 adding 'omicverse/external/SEACells/core.py' 2026-03-27T09:01:36,625 adding 'omicverse/external/SEACells/cpu.py' 2026-03-27T09:01:36,628 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-03-27T09:01:36,629 adding 'omicverse/external/SEACells/domainadapt.py' 2026-03-27T09:01:36,631 adding 'omicverse/external/SEACells/evaluate.py' 2026-03-27T09:01:36,633 adding 'omicverse/external/SEACells/genescores.py' 2026-03-27T09:01:36,636 adding 'omicverse/external/SEACells/gpu.py' 2026-03-27T09:01:36,638 adding 'omicverse/external/SEACells/plot.py' 2026-03-27T09:01:36,640 adding 'omicverse/external/SEACells/preprocess.py' 2026-03-27T09:01:36,641 adding 'omicverse/external/SEACells/tfactivity.py' 2026-03-27T09:01:36,643 adding 'omicverse/external/SEACells/utils.py' 2026-03-27T09:01:36,644 adding 'omicverse/external/SEACells/version.py' 2026-03-27T09:01:36,646 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-03-27T09:01:36,648 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-03-27T09:01:36,649 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-03-27T09:01:36,651 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-03-27T09:01:36,653 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-03-27T09:01:36,654 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-03-27T09:01:36,657 adding 'omicverse/external/STAligner/ST_utils.py' 2026-03-27T09:01:36,659 adding 'omicverse/external/STAligner/gat_conv.py' 2026-03-27T09:01:36,660 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-03-27T09:01:36,662 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-03-27T09:01:36,664 adding 'omicverse/external/STT/__init__.py' 2026-03-27T09:01:36,666 adding 'omicverse/external/STT/pl/__init__.py' 2026-03-27T09:01:36,669 adding 'omicverse/external/STT/pl/_networks.py' 2026-03-27T09:01:36,671 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-03-27T09:01:36,673 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-03-27T09:01:36,675 adding 'omicverse/external/STT/tl/__init__.py' 2026-03-27T09:01:36,676 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-03-27T09:01:36,679 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-03-27T09:01:36,680 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-03-27T09:01:36,682 adding 'omicverse/external/SpatialDE/__init__.py' 2026-03-27T09:01:36,684 adding 'omicverse/external/SpatialDE/aeh.py' 2026-03-27T09:01:36,685 adding 'omicverse/external/SpatialDE/aha.py' 2026-03-27T09:01:36,686 adding 'omicverse/external/SpatialDE/anndata.py' 2026-03-27T09:01:36,689 adding 'omicverse/external/SpatialDE/base.py' 2026-03-27T09:01:36,691 adding 'omicverse/external/SpatialDE/plot.py' 2026-03-27T09:01:36,692 adding 'omicverse/external/SpatialDE/util.py' 2026-03-27T09:01:36,694 adding 'omicverse/external/VIA/__init__.py' 2026-03-27T09:01:36,715 adding 'omicverse/external/VIA/core.py' 2026-03-27T09:01:36,719 adding 'omicverse/external/VIA/datasets_via.py' 2026-03-27T09:01:36,743 adding 'omicverse/external/VIA/plotting_via.py' 2026-03-27T09:01:36,769 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-03-27T09:01:36,783 adding 'omicverse/external/VIA/utils_via.py' 2026-03-27T09:01:36,786 adding 'omicverse/external/VIA/windmap.py' 2026-03-27T09:01:36,787 adding 'omicverse/external/bin2cell/__init__.py' 2026-03-27T09:01:36,801 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-03-27T09:01:36,803 adding 'omicverse/external/bulk2single/__init__.py' 2026-03-27T09:01:36,805 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-03-27T09:01:36,806 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-03-27T09:01:36,808 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-03-27T09:01:36,809 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-03-27T09:01:36,811 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-03-27T09:01:36,813 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-03-27T09:01:36,814 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-03-27T09:01:36,815 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-03-27T09:01:36,818 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-03-27T09:01:36,819 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-03-27T09:01:36,820 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-03-27T09:01:36,822 adding 'omicverse/external/bulk2single/pybayesprism/optim.py' 2026-03-27T09:01:36,824 adding 'omicverse/external/bulk2single/pybayesprism/prism.py' 2026-03-27T09:01:36,826 adding 'omicverse/external/bulk2single/pybayesprism/process_input.py' 2026-03-27T09:01:36,827 adding 'omicverse/external/bulk2single/pybayesprism/references.py' 2026-03-27T09:01:36,829 adding 'omicverse/external/bulk2single/pybayesprism/run.py' 2026-03-27T09:01:36,830 adding 'omicverse/external/bulk2single/pybayesprism/theta_post.py' 2026-03-27T09:01:37,529 adding 'omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt' 2026-03-27T09:01:37,581 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt' 2026-03-27T09:01:37,607 adding 'omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt' 2026-03-27T09:01:37,611 adding 'omicverse/external/bulk2single/scSemiProfiler/__init__.py' 2026-03-27T09:01:37,615 adding 'omicverse/external/bulk2single/scSemiProfiler/fast_generator.py' 2026-03-27T09:01:37,617 adding 'omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py' 2026-03-27T09:01:37,656 adding 'omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt' 2026-03-27T09:01:37,661 adding 'omicverse/external/bulk2single/scSemiProfiler/inference.py' 2026-03-27T09:01:37,662 adding 'omicverse/external/bulk2single/scSemiProfiler/initial_setup.py' 2026-03-27T09:01:37,666 adding 'omicverse/external/bulk2single/scSemiProfiler/oldinference.py' 2026-03-27T09:01:37,668 adding 'omicverse/external/bulk2single/scSemiProfiler/representative_selection.py' 2026-03-27T09:01:37,670 adding 'omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py' 2026-03-27T09:01:37,679 adding 'omicverse/external/bulk2single/scSemiProfiler/utils.py' 2026-03-27T09:01:37,684 adding 'omicverse/external/bulk2single/scSemiProfiler/vaegan.py' 2026-03-27T09:01:37,686 adding 'omicverse/external/cellanova/__init__.py' 2026-03-27T09:01:37,688 adding 'omicverse/external/cellanova/model.py' 2026-03-27T09:01:37,689 adding 'omicverse/external/cellanova/utils.py' 2026-03-27T09:01:37,699 adding 'omicverse/external/cnmf/cnmf.py' 2026-03-27T09:01:37,702 adding 'omicverse/external/cnmf/preprocess.py' 2026-03-27T09:01:37,703 adding 'omicverse/external/commot/__init__.py' 2026-03-27T09:01:37,705 adding 'omicverse/external/commot/_optimal_transport/__init__.py' 2026-03-27T09:01:37,707 adding 'omicverse/external/commot/_optimal_transport/_cot.py' 2026-03-27T09:01:37,710 adding 'omicverse/external/commot/_optimal_transport/_unot.py' 2026-03-27T09:01:37,712 adding 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2026-03-27T09:01:37,789 adding 'omicverse/external/ctxcore/__init__.py' 2026-03-27T09:01:37,791 adding 'omicverse/external/ctxcore/aucell.py' 2026-03-27T09:01:37,793 adding 'omicverse/external/ctxcore/binarization.py' 2026-03-27T09:01:37,796 adding 'omicverse/external/ctxcore/ctdb.py' 2026-03-27T09:01:37,798 adding 'omicverse/external/ctxcore/datatypes.py' 2026-03-27T09:01:37,801 adding 'omicverse/external/ctxcore/genesig.py' 2026-03-27T09:01:37,804 adding 'omicverse/external/ctxcore/recovery.py' 2026-03-27T09:01:37,805 adding 'omicverse/external/ctxcore/rnkdb.py' 2026-03-27T09:01:37,808 adding 'omicverse/external/cytotrace2/gen_utils.py' 2026-03-27T09:01:37,809 adding 'omicverse/external/cytotrace2/models.py' 2026-03-27T09:01:37,811 adding 'omicverse/external/cytotrace2/smoothDatakNN.py' 2026-03-27T09:01:37,813 adding 'omicverse/external/datacollect/README.md' 2026-03-27T09:01:37,815 adding 'omicverse/external/datacollect/TEST_SUITE_README.md' 2026-03-27T09:01:37,816 adding 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2026-03-27T09:01:43,556 adding 'omicverse/single/_lazy_function.py' 2026-03-27T09:01:43,560 adding 'omicverse/single/_lazy_report.py' 2026-03-27T09:01:43,562 adding 'omicverse/single/_lazy_step_by_step.py' 2026-03-27T09:01:43,565 adding 'omicverse/single/_ltnn.py' 2026-03-27T09:01:43,570 adding 'omicverse/single/_markers.py' 2026-03-27T09:01:43,573 adding 'omicverse/single/_mdic3.py' 2026-03-27T09:01:43,575 adding 'omicverse/single/_metacell.py' 2026-03-27T09:01:43,580 adding 'omicverse/single/_milo_dev.py' 2026-03-27T09:01:43,605 adding 'omicverse/single/_mofa.py' 2026-03-27T09:01:43,617 adding 'omicverse/single/_multimap.py' 2026-03-27T09:01:43,620 adding 'omicverse/single/_nocd.py' 2026-03-27T09:01:43,624 adding 'omicverse/single/_pyslingshot.py' 2026-03-27T09:01:43,626 adding 'omicverse/single/_scannorl.py' 2026-03-27T09:01:43,633 adding 'omicverse/single/_sccaf.py' 2026-03-27T09:01:43,636 adding 'omicverse/single/_scdiffusion.py' 2026-03-27T09:01:43,639 adding 'omicverse/single/_scdrug.py' 2026-03-27T09:01:43,645 adding 'omicverse/single/_scenic.py' 2026-03-27T09:01:43,647 adding 'omicverse/single/_scgsea.py' 2026-03-27T09:01:43,649 adding 'omicverse/single/_simba.py' 2026-03-27T09:01:43,652 adding 'omicverse/single/_tosica.py' 2026-03-27T09:01:43,655 adding 'omicverse/single/_traj.py' 2026-03-27T09:01:43,659 adding 'omicverse/single/_velo.py' 2026-03-27T09:01:43,667 adding 'omicverse/single/_via.py' 2026-03-27T09:01:43,669 adding 'omicverse/single/templates/analytics_config.py' 2026-03-27T09:01:43,671 adding 'omicverse/single/templates/analytics_example.py' 2026-03-27T09:01:43,673 adding 'omicverse/single/templates/report_template.html' 2026-03-27T09:01:43,675 adding 'omicverse/single/templates/script.js' 2026-03-27T09:01:43,676 adding 'omicverse/single/templates/sections.html' 2026-03-27T09:01:43,678 adding 'omicverse/single/templates/styles.css' 2026-03-27T09:01:43,680 adding 'omicverse/single/templates/img/placeholder_logo.md' 2026-03-27T09:01:43,684 adding 'omicverse/single/templates/img/stanford-logo.png' 2026-03-27T09:01:43,691 adding 'omicverse/single/templates/img/sun-yet-logo.png' 2026-03-27T09:01:43,695 adding 'omicverse/single/templates/img/ustb-logo.png' 2026-03-27T09:01:43,698 adding 'omicverse/space/__init__.py' 2026-03-27T09:01:43,699 adding 'omicverse/space/_cast.py' 2026-03-27T09:01:43,703 adding 'omicverse/space/_cluster.py' 2026-03-27T09:01:43,705 adding 'omicverse/space/_commot.py' 2026-03-27T09:01:43,709 adding 'omicverse/space/_deconvolution.py' 2026-03-27T09:01:43,713 adding 'omicverse/space/_gaston.py' 2026-03-27T09:01:43,717 adding 'omicverse/space/_integrate.py' 2026-03-27T09:01:43,719 adding 'omicverse/space/_spaceflow.py' 2026-03-27T09:01:43,722 adding 'omicverse/space/_spatrio.py' 2026-03-27T09:01:43,723 adding 'omicverse/space/_starfysh.py' 2026-03-27T09:01:43,725 adding 'omicverse/space/_stt.py' 2026-03-27T09:01:43,730 adding 'omicverse/space/_svg.py' 2026-03-27T09:01:43,733 adding 'omicverse/space/_tangram.py' 2026-03-27T09:01:43,739 adding 'omicverse/space/_tools.py' 2026-03-27T09:01:43,742 adding 'omicverse/utils/__init__.py' 2026-03-27T09:01:43,744 adding 'omicverse/utils/_analytics_sender.py' 2026-03-27T09:01:43,748 adding 'omicverse/utils/_anndata_rust_patch.py' 2026-03-27T09:01:43,752 adding 'omicverse/utils/_cluster.py' 2026-03-27T09:01:43,757 adding 'omicverse/utils/_data.py' 2026-03-27T09:01:43,759 adding 'omicverse/utils/_enum.py' 2026-03-27T09:01:43,762 adding 'omicverse/utils/_gene_id_conversion.py' 2026-03-27T09:01:43,765 adding 'omicverse/utils/_genomics.py' 2026-03-27T09:01:43,768 adding 'omicverse/utils/_heatmap.py' 2026-03-27T09:01:43,770 adding 'omicverse/utils/_knn.py' 2026-03-27T09:01:43,771 adding 'omicverse/utils/_lsi.py' 2026-03-27T09:01:43,772 adding 'omicverse/utils/_mde.py' 2026-03-27T09:01:43,775 adding 'omicverse/utils/_neighboors.py' 2026-03-27T09:01:43,777 adding 'omicverse/utils/_odds_ratio.py' 2026-03-27T09:01:43,780 adding 'omicverse/utils/_paga.py' 2026-03-27T09:01:43,788 adding 'omicverse/utils/_plot.py' 2026-03-27T09:01:43,792 adding 'omicverse/utils/_resolution.py' 2026-03-27T09:01:43,794 adding 'omicverse/utils/_roe.py' 2026-03-27T09:01:43,804 adding 'omicverse/utils/_scatterplot.py' 2026-03-27T09:01:43,810 adding 'omicverse/utils/_scice.py' 2026-03-27T09:01:43,812 adding 'omicverse/utils/_shannon_diversity.py' 2026-03-27T09:01:43,814 adding 'omicverse/utils/_syn.py' 2026-03-27T09:01:43,815 adding 'omicverse/utils/_venn.py' 2026-03-27T09:01:43,829 adding 'omicverse/utils/agent_backend.py' 2026-03-27T09:01:43,832 adding 'omicverse/utils/agent_config.py' 2026-03-27T09:01:43,834 adding 'omicverse/utils/agent_errors.py' 2026-03-27T09:01:43,835 adding 'omicverse/utils/agent_reporter.py' 2026-03-27T09:01:43,838 adding 'omicverse/utils/agent_sandbox.py' 2026-03-27T09:01:43,840 adding 'omicverse/utils/context_compactor.py' 2026-03-27T09:01:43,846 adding 'omicverse/utils/filesystem_context.py' 2026-03-27T09:01:43,849 adding 'omicverse/utils/model_config.py' 2026-03-27T09:01:43,851 adding 'omicverse/utils/session_history.py' 2026-03-27T09:01:43,855 adding 'omicverse/utils/session_notebook_executor.py' 2026-03-27T09:01:43,859 adding 'omicverse/utils/skill_registry.py' 2026-03-27T09:01:43,867 adding 'omicverse/utils/smart_agent.py' 2026-03-27T09:01:43,869 adding 'omicverse/utils/harness/__init__.py' 2026-03-27T09:01:43,871 adding 'omicverse/utils/harness/cleanup.py' 2026-03-27T09:01:43,872 adding 'omicverse/utils/harness/contracts.py' 2026-03-27T09:01:43,876 adding 'omicverse/utils/harness/runtime_state.py' 2026-03-27T09:01:43,877 adding 'omicverse/utils/harness/server_cli.py' 2026-03-27T09:01:43,880 adding 'omicverse/utils/harness/tool_catalog.py' 2026-03-27T09:01:43,882 adding 'omicverse/utils/harness/trace_store.py' 2026-03-27T09:01:43,884 adding 'omicverse/utils/inspector/__init__.py' 2026-03-27T09:01:43,887 adding 'omicverse/utils/inspector/agent_context_injector.py' 2026-03-27T09:01:43,890 adding 'omicverse/utils/inspector/auto_prerequisite_inserter.py' 2026-03-27T09:01:43,892 adding 'omicverse/utils/inspector/data_state_validator.py' 2026-03-27T09:01:43,894 adding 'omicverse/utils/inspector/data_structures.py' 2026-03-27T09:01:43,896 adding 'omicverse/utils/inspector/examples.py' 2026-03-27T09:01:43,898 adding 'omicverse/utils/inspector/inspector.py' 2026-03-27T09:01:43,901 adding 'omicverse/utils/inspector/llm_formatter.py' 2026-03-27T09:01:43,903 adding 'omicverse/utils/inspector/prerequisite_checker.py' 2026-03-27T09:01:43,906 adding 'omicverse/utils/inspector/production_api.py' 2026-03-27T09:01:43,908 adding 'omicverse/utils/inspector/suggestion_engine.py' 2026-03-27T09:01:43,910 adding 'omicverse/utils/inspector/validators.py' 2026-03-27T09:01:43,913 adding 'omicverse/utils/inspector/workflow_escalator.py' 2026-03-27T09:01:43,915 adding 'omicverse/utils/ovagent/__init__.py' 2026-03-27T09:01:43,920 adding 'omicverse/utils/ovagent/analysis_executor.py' 2026-03-27T09:01:43,922 adding 'omicverse/utils/ovagent/auth.py' 2026-03-27T09:01:43,924 adding 'omicverse/utils/ovagent/bootstrap.py' 2026-03-27T09:01:43,929 adding 'omicverse/utils/ovagent/codegen_pipeline.py' 2026-03-27T09:01:43,931 adding 'omicverse/utils/ovagent/context_budget.py' 2026-03-27T09:01:43,933 adding 'omicverse/utils/ovagent/event_stream.py' 2026-03-27T09:01:43,935 adding 'omicverse/utils/ovagent/permission_policy.py' 2026-03-27T09:01:43,937 adding 'omicverse/utils/ovagent/prompt_builder.py' 2026-03-27T09:01:43,939 adding 'omicverse/utils/ovagent/prompt_templates.py' 2026-03-27T09:01:43,941 adding 'omicverse/utils/ovagent/protocol.py' 2026-03-27T09:01:43,943 adding 'omicverse/utils/ovagent/registry_scanner.py' 2026-03-27T09:01:43,946 adding 'omicverse/utils/ovagent/repair_loop.py' 2026-03-27T09:01:43,947 adding 'omicverse/utils/ovagent/run_store.py' 2026-03-27T09:01:43,949 adding 'omicverse/utils/ovagent/runtime.py' 2026-03-27T09:01:43,950 adding 'omicverse/utils/ovagent/session_context.py' 2026-03-27T09:01:43,952 adding 'omicverse/utils/ovagent/subagent_controller.py' 2026-03-27T09:01:43,955 adding 'omicverse/utils/ovagent/tool_registry.py' 2026-03-27T09:01:43,962 adding 'omicverse/utils/ovagent/tool_runtime.py' 2026-03-27T09:01:43,964 adding 'omicverse/utils/ovagent/tool_scheduler.py' 2026-03-27T09:01:43,970 adding 'omicverse/utils/ovagent/turn_controller.py' 2026-03-27T09:01:43,972 adding 'omicverse/utils/ovagent/workflow.py' 2026-03-27T09:01:43,976 adding 'omicverse/utils/verifier/README.md' 2026-03-27T09:01:43,978 adding 'omicverse/utils/verifier/__init__.py' 2026-03-27T09:01:43,979 adding 'omicverse/utils/verifier/__main__.py' 2026-03-27T09:01:43,982 adding 'omicverse/utils/verifier/cli.py' 2026-03-27T09:01:43,983 adding 'omicverse/utils/verifier/data_structures.py' 2026-03-27T09:01:43,986 adding 'omicverse/utils/verifier/end_to_end_verifier.py' 2026-03-27T09:01:43,988 adding 'omicverse/utils/verifier/llm_skill_selector.py' 2026-03-27T09:01:43,990 adding 'omicverse/utils/verifier/notebook_task_extractor.py' 2026-03-27T09:01:43,992 adding 'omicverse/utils/verifier/skill_description_loader.py' 2026-03-27T09:01:43,995 adding 'omicverse/utils/verifier/skill_description_quality.py' 2026-03-27T09:01:44,002 adding 'omicverse-2.1.1rc1.dist-info/licenses/LICENSE' 2026-03-27T09:01:44,011 adding 'omicverse-2.1.1rc1.dist-info/METADATA' 2026-03-27T09:01:44,013 adding 'omicverse-2.1.1rc1.dist-info/WHEEL' 2026-03-27T09:01:44,014 adding 'omicverse-2.1.1rc1.dist-info/entry_points.txt' 2026-03-27T09:01:44,015 adding 'omicverse-2.1.1rc1.dist-info/top_level.txt' 2026-03-27T09:01:44,035 adding 'omicverse-2.1.1rc1.dist-info/RECORD' 2026-03-27T09:01:44,191 removing build/bdist.linux-armv7l/wheel 2026-03-27T09:01:44,510 Traceback (most recent call last): 2026-03-27T09:01:44,511 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 202, in run_commands 2026-03-27T09:01:44,513 dist.run_commands() 2026-03-27T09:01:44,514 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1000, in run_commands 2026-03-27T09:01:44,515 self.run_command(cmd) 2026-03-27T09:01:44,516 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py", line 1107, in run_command 2026-03-27T09:01:44,516 super().run_command(command) 2026-03-27T09:01:44,517 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/dist.py", line 1019, in run_command 2026-03-27T09:01:44,518 cmd_obj.run() 2026-03-27T09:01:44,518 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/command/bdist_wheel.py", line 452, in run 2026-03-27T09:01:44,519 _shutil.rmtree(self.bdist_dir) 2026-03-27T09:01:44,519 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_shutil.py", line 48, in rmtree 2026-03-27T09:01:44,520 return py311.shutil_rmtree(path, ignore_errors, onexc) 2026-03-27T09:01:44,521 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,521 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/compat/py311.py", line 27, in shutil_rmtree 2026-03-27T09:01:44,522 return shutil.rmtree(path, ignore_errors, onerror=_handler) 2026-03-27T09:01:44,522 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,522 File "/usr/lib/python3.11/shutil.py", line 732, in rmtree 2026-03-27T09:01:44,523 _rmtree_safe_fd(fd, path, onerror) 2026-03-27T09:01:44,523 File "/usr/lib/python3.11/shutil.py", line 660, in _rmtree_safe_fd 2026-03-27T09:01:44,524 _rmtree_safe_fd(dirfd, fullname, onerror) 2026-03-27T09:01:44,524 File "/usr/lib/python3.11/shutil.py", line 660, in _rmtree_safe_fd 2026-03-27T09:01:44,525 _rmtree_safe_fd(dirfd, fullname, onerror) 2026-03-27T09:01:44,525 File "/usr/lib/python3.11/shutil.py", line 660, in _rmtree_safe_fd 2026-03-27T09:01:44,526 _rmtree_safe_fd(dirfd, fullname, onerror) 2026-03-27T09:01:44,527 [Previous line repeated 1 more time] 2026-03-27T09:01:44,527 File "/usr/lib/python3.11/shutil.py", line 666, in _rmtree_safe_fd 2026-03-27T09:01:44,528 onerror(os.rmdir, fullname, sys.exc_info()) 2026-03-27T09:01:44,528 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/compat/py311.py", line 25, in _handler 2026-03-27T09:01:44,529 onexc(fn, path, excinfo[1]) 2026-03-27T09:01:44,529 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_shutil.py", line 40, in _auto_chmod 2026-03-27T09:01:44,530 raise exc 2026-03-27T09:01:44,530 File "/usr/lib/python3.11/shutil.py", line 664, in _rmtree_safe_fd 2026-03-27T09:01:44,531 os.rmdir(entry.name, dir_fd=topfd) 2026-03-27T09:01:44,532 OSError: [Errno 39] Directory not empty: 'GeneSymbolUniform' 2026-03-27T09:01:44,533 During handling of the above exception, another exception occurred: 2026-03-27T09:01:44,534 Traceback (most recent call last): 2026-03-27T09:01:44,534 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 410, in _build_with_temp_dir 2026-03-27T09:01:44,535 self.run_setup() 2026-03-27T09:01:44,535 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 317, in run_setup 2026-03-27T09:01:44,536 exec(code, locals()) 2026-03-27T09:01:44,536 File "", line 12, in 2026-03-27T09:01:44,537 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/__init__.py", line 117, in setup 2026-03-27T09:01:44,537 return distutils.core.setup(**attrs) # type: ignore[return-value] 2026-03-27T09:01:44,538 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,538 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 186, in setup 2026-03-27T09:01:44,539 return run_commands(dist) 2026-03-27T09:01:44,539 ^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,540 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/_distutils/core.py", line 210, in run_commands 2026-03-27T09:01:44,540 raise SystemExit(f"error: {exc}") 2026-03-27T09:01:44,541 SystemExit: error: [Errno 39] Directory not empty: 'GeneSymbolUniform' 2026-03-27T09:01:44,542 During handling of the above exception, another exception occurred: 2026-03-27T09:01:44,543 Traceback (most recent call last): 2026-03-27T09:01:44,543 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 353, in 2026-03-27T09:01:44,544 main() 2026-03-27T09:01:44,544 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 335, in main 2026-03-27T09:01:44,545 json_out['return_val'] = hook(**hook_input['kwargs']) 2026-03-27T09:01:44,546 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,546 File "/usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py", line 251, in build_wheel 2026-03-27T09:01:44,547 return _build_backend().build_wheel(wheel_directory, config_settings, 2026-03-27T09:01:44,547 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,547 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 441, in build_wheel 2026-03-27T09:01:44,548 return _build(['bdist_wheel', '--dist-info-dir', str(metadata_directory)]) 2026-03-27T09:01:44,548 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,549 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 429, in _build 2026-03-27T09:01:44,549 return self._build_with_temp_dir( 2026-03-27T09:01:44,549 ^^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:44,550 File "/tmp/pip-build-env-bk5fp2e9/overlay/local/lib/python3.11/dist-packages/setuptools/build_meta.py", line 398, in _build_with_temp_dir 2026-03-27T09:01:44,550 with tempfile.TemporaryDirectory( 2026-03-27T09:01:44,551 File "/usr/lib/python3.11/tempfile.py", line 1052, in __exit__ 2026-03-27T09:01:44,551 self.cleanup() 2026-03-27T09:01:44,552 File "/usr/lib/python3.11/tempfile.py", line 1056, in cleanup 2026-03-27T09:01:44,552 self._rmtree(self.name, ignore_errors=self._ignore_cleanup_errors) 2026-03-27T09:01:44,553 File "/usr/lib/python3.11/tempfile.py", line 1038, in _rmtree 2026-03-27T09:01:44,554 _rmtree(name, onerror=onerror) 2026-03-27T09:01:44,554 File "/usr/lib/python3.11/shutil.py", line 738, in rmtree 2026-03-27T09:01:44,555 onerror(os.rmdir, path, sys.exc_info()) 2026-03-27T09:01:44,556 File "/usr/lib/python3.11/shutil.py", line 736, in rmtree 2026-03-27T09:01:44,557 os.rmdir(path, dir_fd=dir_fd) 2026-03-27T09:01:44,557 OSError: [Errno 39] Directory not empty: '/tmp/pip-wheel-l2cdpzbz/.tmp-uwut3s5j' 2026-03-27T09:01:44,678 ERROR: [present-rich] Building wheel for omicverse (pyproject.toml) exited with 1 2026-03-27T09:01:44,691 [bold magenta]full command[/]: [blue]/usr/bin/python3 /usr/lib/python3/dist-packages/pip/_vendor/pyproject_hooks/_in_process/_in_process.py build_wheel /tmp/tmptuurqoke[/] 2026-03-27T09:01:44,691 [bold magenta]cwd[/]: /tmp/pip-wheel-y9mfxwdw/omicverse_427f1e183b964618919e7fd2cc02ac6f 2026-03-27T09:01:44,692 Building wheel for omicverse (pyproject.toml): finished with status 'error' 2026-03-27T09:01:44,694 ERROR: Failed building wheel for omicverse 2026-03-27T09:01:45,240 Failed to build omicverse 2026-03-27T09:01:45,241 ERROR: Failed to build one or more wheels 2026-03-27T09:01:45,243 Exception information: 2026-03-27T09:01:45,243 Traceback (most recent call last): 2026-03-27T09:01:45,243 File "/usr/lib/python3/dist-packages/pip/_internal/cli/base_command.py", line 160, in exc_logging_wrapper 2026-03-27T09:01:45,243 status = run_func(*args) 2026-03-27T09:01:45,243 ^^^^^^^^^^^^^^^ 2026-03-27T09:01:45,243 File "/usr/lib/python3/dist-packages/pip/_internal/cli/req_command.py", line 247, in wrapper 2026-03-27T09:01:45,243 return func(self, options, args) 2026-03-27T09:01:45,243 ^^^^^^^^^^^^^^^^^^^^^^^^^ 2026-03-27T09:01:45,243 File "/usr/lib/python3/dist-packages/pip/_internal/commands/wheel.py", line 201, in run 2026-03-27T09:01:45,243 raise CommandError("Failed to build one or more wheels") 2026-03-27T09:01:45,243 pip._internal.exceptions.CommandError: Failed to build one or more wheels 2026-03-27T09:01:45,247 Removed build tracker: '/tmp/pip-build-tracker-ygby8cld'