2026-03-27T12:25:14,374 Created temporary directory: /tmp/pip-ephem-wheel-cache-z5wrnc6g
2026-03-27T12:25:14,376 Created temporary directory: /tmp/pip-build-tracker-1_sbhnm2
2026-03-27T12:25:14,376 Initialized build tracking at /tmp/pip-build-tracker-1_sbhnm2
2026-03-27T12:25:14,377 Created build tracker: /tmp/pip-build-tracker-1_sbhnm2
2026-03-27T12:25:14,377 Entered build tracker: /tmp/pip-build-tracker-1_sbhnm2
2026-03-27T12:25:14,378 Created temporary directory: /tmp/pip-wheel-lejl233u
2026-03-27T12:25:14,381 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-27T12:25:14,383 Created temporary directory: /tmp/pip-ephem-wheel-cache-mpag2chz
2026-03-27T12:25:14,407 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-27T12:25:14,411 2 location(s) to search for versions of pymlst:
2026-03-27T12:25:14,411 * https://pypi.org/simple/pymlst/
2026-03-27T12:25:14,411 * https://www.piwheels.org/simple/pymlst/
2026-03-27T12:25:14,411 Fetching project page and analyzing links: https://pypi.org/simple/pymlst/
2026-03-27T12:25:14,412 Getting page https://pypi.org/simple/pymlst/
2026-03-27T12:25:14,413 Found index url https://pypi.org/simple
2026-03-27T12:25:14,642 Fetched page https://pypi.org/simple/pymlst/ as application/vnd.pypi.simple.v1+json
2026-03-27T12:25:14,647   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/c9/58/b20aff870603ed350a23e651f3051764f84411f47dce6a04fb7005da52a4/PyMLST-2.0.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,647   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/ee/ae/cb1ae640761c8bd7001800973a72b475552793dd99b8caa5e078f29a0faa/PyMLST-2.1.0-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,648   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/46/2d/d32aed32e3a77ae21226a144f0ca31b040907cfa65c6b0de4c95a49768bf/PyMLST-2.1.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,649   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/a1/ac/76b9312b65e1f7f7638b6eb46cecb9341c7d55a34a9796b96ce22366522f/PyMLST-2.1.2-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,650   Found link https://files.pythonhosted.org/packages/b8/96/cca409adee7a3c61adc124ac12da584545819427f10487a01d84eadc71c5/PyMLST-2.1.2.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.2
2026-03-27T12:25:14,650   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/79/fa/b291f5dbc74c78c7ff6f0e4225d1199d10d3e750c4273935f83327fbfedd/PyMLST-2.1.3-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,651   Found link https://files.pythonhosted.org/packages/f1/ee/77f0663a2221d7e44b07a14f74c6d3279c19640338e84f2c39ed984bb166/PyMLST-2.1.3.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.3
2026-03-27T12:25:14,652   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/58/2c/9087cc4a524d0ebf9a2104e229422266299f5e37d01d09f75d10288d7162/PyMLST-2.1.4-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,653   Found link https://files.pythonhosted.org/packages/58/54/4ddd2e96629a17bf60e728e48e53e47f0720710db9b1416b3d34716f9824/PyMLST-2.1.4.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.4
2026-03-27T12:25:14,654   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/10/24/f5fe2d09f56d6e608f0807a60f2734c2919a594bfeaee597af31dfc74324/PyMLST-2.1.5-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,655   Found link https://files.pythonhosted.org/packages/e4/b0/96c1a8c9399e5bb594048bf3c9cbedb1f1708d2bd251cd540460dfb343eb/PyMLST-2.1.5.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.5
2026-03-27T12:25:14,655   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/dd/50/964d6216670084035fbd5eba552322f6899802ac8603b8ba68e5806d64b8/PyMLST-2.1.6-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,656   Found link https://files.pythonhosted.org/packages/d9/20/714bafa3d1d2d2ec7bbed2ada2109fa23c00432f7b4c31892b216b5bc3b4/PyMLST-2.1.6.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.1.6
2026-03-27T12:25:14,657   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/9b/66/70a19f60f1d2f8acea2ed6bdc84acd5b71e947404392cd39c6bfd7729b67/pymlst-2.2.0-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,658   Found link https://files.pythonhosted.org/packages/f9/ab/7603a73eb36681c9b81757f2626058a3f816e91803f32bca22404e3be926/pymlst-2.2.0.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.2.0
2026-03-27T12:25:14,658   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/30/f7/bd5fbf3bbc63e3314e8fedd0e29848c446743e9d53d3260044466d2e25b1/pymlst-2.2.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,659   Found link https://files.pythonhosted.org/packages/e6/ab/4c8c0da60a0102a3fc0b148e26989f6f32b3fe592cb9c1477b42dc316995/pymlst-2.2.1.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.2.1
2026-03-27T12:25:14,660   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/b7/05/ef24fdf0d4930cd6c5ed697ede3a2b6567b58a5dcdc49f64bf9704ce27cd/pymlst-2.2.2-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,661   Found link https://files.pythonhosted.org/packages/a9/2e/5097659fd066abe21291e0c5986e858f08dbd6ab17f13a0f1c7b09420ba7/pymlst-2.2.2.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.2.2
2026-03-27T12:25:14,661   Skipping link: No binaries permitted for pymlst: https://files.pythonhosted.org/packages/96/73/4d52c3ed3479bf01807b464b2d1f571f58270b73f9d15ed2bee562215822/pymlst-2.3.1-py3-none-any.whl (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,662   Found link https://files.pythonhosted.org/packages/4e/7f/27a646e359f5e3afec03de071db7e58fda2dffa85982ff99c794188517b6/pymlst-2.3.1.tar.gz (from https://pypi.org/simple/pymlst/) (requires-python:>=3.7.0), version: 2.3.1
2026-03-27T12:25:14,663 Fetching project page and analyzing links: https://www.piwheels.org/simple/pymlst/
2026-03-27T12:25:14,663 Getting page https://www.piwheels.org/simple/pymlst/
2026-03-27T12:25:14,665 Found index url https://www.piwheels.org/simple
2026-03-27T12:25:14,830 Fetched page https://www.piwheels.org/simple/pymlst/ as text/html
2026-03-27T12:25:14,834   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/pymlst-2.2.2-py3-none-any.whl#sha256=6c9e4d4b80c2e436e6a7092724a2af1af0a5a882bbf47e4c5764762fd07bb525 (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,834   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.2.1-py3-none-any.whl#sha256=bb4e9bee8716053e3cc3fff0551aec157b0b594e887ead0bad2b102dd5343f12 (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,835   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.2.0-py3-none-any.whl#sha256=c915538feda73b6751ef6a6b9741f62f25c84c0dd636d498a34ffc1b97bb6a97 (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,836   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.1.6-py3-none-any.whl#sha256=ece835bc63448a03352c031050db6b7df4b52e97b6937f9ec14af3dc2c362727 (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,837   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.1.5-py3-none-any.whl#sha256=e38b9c1963b2c716d732ab1dc563d6f74b98e4ccef1a40ae039525256743bd7a (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,837   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.1.4-py3-none-any.whl#sha256=1ef8f7966d09ce4aaf7cb04b9eb249944571ae0ea90baf0208af43def98b40aa (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,838   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.1.3-py3-none-any.whl#sha256=f2069f50ecc8c8b203e9257f5c011010e50959605a806e70142dfde35d0e77eb (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,838   Skipping link: No binaries permitted for pymlst: https://archive1.piwheels.org/simple/pymlst/PyMLST-2.1.2-py3-none-any.whl#sha256=23fec25be78d92f9683e799227d86c9a19ca909d5f9ecae088c1d70ef372395b (from https://www.piwheels.org/simple/pymlst/) (requires-python:>=3.7.0)
2026-03-27T12:25:14,839 Skipping link: not a file: https://www.piwheels.org/simple/pymlst/
2026-03-27T12:25:14,839 Skipping link: not a file: https://pypi.org/simple/pymlst/
2026-03-27T12:25:14,859 Given no hashes to check 1 links for project 'pymlst': discarding no candidates
2026-03-27T12:25:14,876 Collecting pymlst==2.3.1
2026-03-27T12:25:14,878   Created temporary directory: /tmp/pip-unpack-kek44j0x
2026-03-27T12:25:15,025   Downloading pymlst-2.3.1.tar.gz (54 kB)
2026-03-27T12:25:15,211   Added pymlst==2.3.1 from https://files.pythonhosted.org/packages/4e/7f/27a646e359f5e3afec03de071db7e58fda2dffa85982ff99c794188517b6/pymlst-2.3.1.tar.gz to build tracker '/tmp/pip-build-tracker-1_sbhnm2'
2026-03-27T12:25:15,212   Running setup.py (path:/tmp/pip-wheel-lejl233u/pymlst_7dcedfebb73b4d2c95d3eca0d35d7c79/setup.py) egg_info for package pymlst
2026-03-27T12:25:15,213   Created temporary directory: /tmp/pip-pip-egg-info-jn9u9ryh
2026-03-27T12:25:15,214   Preparing metadata (setup.py): started
2026-03-27T12:25:15,215   Running command python setup.py egg_info
2026-03-27T12:25:15,749   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2026-03-27T12:25:15,750   !!

2026-03-27T12:25:15,751           ********************************************************************************
2026-03-27T12:25:15,752           Usage of dash-separated 'description-file' will not be supported in future
2026-03-27T12:25:15,752           versions. Please use the underscore name 'description_file' instead.


2026-03-27T12:25:15,754           Available configuration options are listed in:
2026-03-27T12:25:15,754           https://setuptools.pypa.io/en/latest/userguide/declarative_config.html

2026-03-27T12:25:15,755           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:15,756           calls to avoid build errors in the future.

2026-03-27T12:25:15,757           See https://github.com/pypa/setuptools/discussions/5011 for details.
2026-03-27T12:25:15,758           ********************************************************************************

2026-03-27T12:25:15,759   !!
2026-03-27T12:25:15,760     opt = self._enforce_underscore(opt, section)
2026-03-27T12:25:15,784   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2026-03-27T12:25:15,785   !!

2026-03-27T12:25:15,786           ********************************************************************************
2026-03-27T12:25:15,786           Requirements should be satisfied by a PEP 517 installer.
2026-03-27T12:25:15,787           If you are using pip, you can try `pip install --use-pep517`.

2026-03-27T12:25:15,787           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:15,788           calls to avoid build errors in the future.
2026-03-27T12:25:15,788           ********************************************************************************

2026-03-27T12:25:15,789   !!
2026-03-27T12:25:15,789     dist.fetch_build_eggs(dist.setup_requires)
2026-03-27T12:25:16,167   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2026-03-27T12:25:16,168   !!

2026-03-27T12:25:16,169           ********************************************************************************
2026-03-27T12:25:16,169           Usage of dash-separated 'description-file' will not be supported in future
2026-03-27T12:25:16,169           versions. Please use the underscore name 'description_file' instead.
2026-03-27T12:25:16,170           (Affected: PyMLST).

2026-03-27T12:25:16,171           Available configuration options are listed in:
2026-03-27T12:25:16,171           https://setuptools.pypa.io/en/latest/userguide/declarative_config.html

2026-03-27T12:25:16,172           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:16,173           calls to avoid build errors in the future.

2026-03-27T12:25:16,174           See https://github.com/pypa/setuptools/discussions/5011 for details.
2026-03-27T12:25:16,175           ********************************************************************************

2026-03-27T12:25:16,176   !!
2026-03-27T12:25:16,177     opt = self._enforce_underscore(opt, section)
2026-03-27T12:25:16,177   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-27T12:25:16,178   !!

2026-03-27T12:25:16,179           ********************************************************************************
2026-03-27T12:25:16,179           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-27T12:25:16,181           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-03-27T12:25:16,182           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-27T12:25:16,182           ********************************************************************************

2026-03-27T12:25:16,183   !!
2026-03-27T12:25:16,184     self._finalize_license_expression()
2026-03-27T12:25:16,200   running egg_info
2026-03-27T12:25:16,228   creating /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info
2026-03-27T12:25:16,229   writing /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/PKG-INFO
2026-03-27T12:25:16,232   writing dependency_links to /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/dependency_links.txt
2026-03-27T12:25:16,234   writing entry points to /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/entry_points.txt
2026-03-27T12:25:16,236   writing requirements to /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/requires.txt
2026-03-27T12:25:16,237   writing top-level names to /tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/top_level.txt
2026-03-27T12:25:16,238   writing manifest file '/tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/SOURCES.txt'
2026-03-27T12:25:16,333   reading manifest file '/tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/SOURCES.txt'
2026-03-27T12:25:16,334   reading manifest template 'MANIFEST.in'
2026-03-27T12:25:16,339   adding license file 'LICENSE'
2026-03-27T12:25:16,344   writing manifest file '/tmp/pip-pip-egg-info-jn9u9ryh/PyMLST.egg-info/SOURCES.txt'
2026-03-27T12:25:16,452   Preparing metadata (setup.py): finished with status 'done'
2026-03-27T12:25:16,457   Source in /tmp/pip-wheel-lejl233u/pymlst_7dcedfebb73b4d2c95d3eca0d35d7c79 has version 2.3.1, which satisfies requirement pymlst==2.3.1 from https://files.pythonhosted.org/packages/4e/7f/27a646e359f5e3afec03de071db7e58fda2dffa85982ff99c794188517b6/pymlst-2.3.1.tar.gz
2026-03-27T12:25:16,458   Removed pymlst==2.3.1 from https://files.pythonhosted.org/packages/4e/7f/27a646e359f5e3afec03de071db7e58fda2dffa85982ff99c794188517b6/pymlst-2.3.1.tar.gz from build tracker '/tmp/pip-build-tracker-1_sbhnm2'
2026-03-27T12:25:16,464 Created temporary directory: /tmp/pip-unpack-w8t8rvg3
2026-03-27T12:25:16,464 Building wheels for collected packages: pymlst
2026-03-27T12:25:16,468   Created temporary directory: /tmp/pip-wheel-kc56xq17
2026-03-27T12:25:16,469   Building wheel for pymlst (setup.py): started
2026-03-27T12:25:16,470   Destination directory: /tmp/pip-wheel-kc56xq17
2026-03-27T12:25:16,470   Running command python setup.py bdist_wheel
2026-03-27T12:25:16,983   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2026-03-27T12:25:16,984   !!

2026-03-27T12:25:16,985           ********************************************************************************
2026-03-27T12:25:16,985           Usage of dash-separated 'description-file' will not be supported in future
2026-03-27T12:25:16,986           versions. Please use the underscore name 'description_file' instead.


2026-03-27T12:25:16,988           Available configuration options are listed in:
2026-03-27T12:25:16,988           https://setuptools.pypa.io/en/latest/userguide/declarative_config.html

2026-03-27T12:25:16,989           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:16,990           calls to avoid build errors in the future.

2026-03-27T12:25:16,991           See https://github.com/pypa/setuptools/discussions/5011 for details.
2026-03-27T12:25:16,992           ********************************************************************************

2026-03-27T12:25:16,993   !!
2026-03-27T12:25:16,994     opt = self._enforce_underscore(opt, section)
2026-03-27T12:25:17,011   /usr/local/lib/python3.11/dist-packages/setuptools/__init__.py:92: _DeprecatedInstaller: setuptools.installer and fetch_build_eggs are deprecated.
2026-03-27T12:25:17,012   !!

2026-03-27T12:25:17,013           ********************************************************************************
2026-03-27T12:25:17,013           Requirements should be satisfied by a PEP 517 installer.
2026-03-27T12:25:17,014           If you are using pip, you can try `pip install --use-pep517`.

2026-03-27T12:25:17,015           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:17,016           calls to avoid build errors in the future.
2026-03-27T12:25:17,016           ********************************************************************************

2026-03-27T12:25:17,017   !!
2026-03-27T12:25:17,018     dist.fetch_build_eggs(dist.setup_requires)
2026-03-27T12:25:17,381   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:599: SetuptoolsDeprecationWarning: Invalid dash-separated key 'description-file' in 'metadata' (setup.cfg), please use the underscore name 'description_file' instead.
2026-03-27T12:25:17,382   !!

2026-03-27T12:25:17,383           ********************************************************************************
2026-03-27T12:25:17,383           Usage of dash-separated 'description-file' will not be supported in future
2026-03-27T12:25:17,384           versions. Please use the underscore name 'description_file' instead.
2026-03-27T12:25:17,385           (Affected: PyMLST).

2026-03-27T12:25:17,386           Available configuration options are listed in:
2026-03-27T12:25:17,386           https://setuptools.pypa.io/en/latest/userguide/declarative_config.html

2026-03-27T12:25:17,388           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:17,388           calls to avoid build errors in the future.

2026-03-27T12:25:17,389           See https://github.com/pypa/setuptools/discussions/5011 for details.
2026-03-27T12:25:17,390           ********************************************************************************

2026-03-27T12:25:17,391   !!
2026-03-27T12:25:17,391     opt = self._enforce_underscore(opt, section)
2026-03-27T12:25:17,392   /usr/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-03-27T12:25:17,392   !!

2026-03-27T12:25:17,393           ********************************************************************************
2026-03-27T12:25:17,394           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-03-27T12:25:17,394           License :: OSI Approved :: GNU General Public License v3 (GPLv3)

2026-03-27T12:25:17,395           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-03-27T12:25:17,396           ********************************************************************************

2026-03-27T12:25:17,397   !!
2026-03-27T12:25:17,397     self._finalize_license_expression()
2026-03-27T12:25:17,397   running bdist_wheel
2026-03-27T12:25:17,517   running build
2026-03-27T12:25:17,518   running build_py
2026-03-27T12:25:17,547   creating build/lib/pymlst
2026-03-27T12:25:17,549   copying pymlst/cmd.py -> build/lib/pymlst
2026-03-27T12:25:17,551   copying pymlst/__init__.py -> build/lib/pymlst
2026-03-27T12:25:17,553   copying pymlst/version.py -> build/lib/pymlst
2026-03-27T12:25:17,554   copying pymlst/config.py -> build/lib/pymlst
2026-03-27T12:25:17,557   creating build/lib/pymlst/wg
2026-03-27T12:25:17,558   copying pymlst/wg/extractors.py -> build/lib/pymlst/wg
2026-03-27T12:25:17,560   copying pymlst/wg/core.py -> build/lib/pymlst/wg
2026-03-27T12:25:17,563   copying pymlst/wg/__init__.py -> build/lib/pymlst/wg
2026-03-27T12:25:17,565   copying pymlst/wg/model.py -> build/lib/pymlst/wg
2026-03-27T12:25:17,567   creating build/lib/pymlst/cla
2026-03-27T12:25:17,568   copying pymlst/cla/core.py -> build/lib/pymlst/cla
2026-03-27T12:25:17,570   copying pymlst/cla/__init__.py -> build/lib/pymlst/cla
2026-03-27T12:25:17,572   copying pymlst/cla/model.py -> build/lib/pymlst/cla
2026-03-27T12:25:17,574   creating build/lib/pymlst/pytyper
2026-03-27T12:25:17,575   copying pymlst/pytyper/core.py -> build/lib/pymlst/pytyper
2026-03-27T12:25:17,578   copying pymlst/pytyper/__init__.py -> build/lib/pymlst/pytyper
2026-03-27T12:25:17,580   copying pymlst/pytyper/method.py -> build/lib/pymlst/pytyper
2026-03-27T12:25:17,581   copying pymlst/pytyper/model.py -> build/lib/pymlst/pytyper
2026-03-27T12:25:17,583   copying pymlst/pytyper/url.py -> build/lib/pymlst/pytyper
2026-03-27T12:25:17,585   creating build/lib/pymlst/common
2026-03-27T12:25:17,586   copying pymlst/common/flag.py -> build/lib/pymlst/common
2026-03-27T12:25:17,588   copying pymlst/common/exceptions.py -> build/lib/pymlst/common
2026-03-27T12:25:17,590   copying pymlst/common/mafft.py -> build/lib/pymlst/common
2026-03-27T12:25:17,591   copying pymlst/common/web.py -> build/lib/pymlst/common
2026-03-27T12:25:17,594   copying pymlst/common/kma.py -> build/lib/pymlst/common
2026-03-27T12:25:17,596   copying pymlst/common/utils.py -> build/lib/pymlst/common
2026-03-27T12:25:17,598   copying pymlst/common/__init__.py -> build/lib/pymlst/common
2026-03-27T12:25:17,600   copying pymlst/common/blat.py -> build/lib/pymlst/common
2026-03-27T12:25:17,602   copying pymlst/common/psl.py -> build/lib/pymlst/common
2026-03-27T12:25:17,604   creating build/lib/pymlst/wg/commands
2026-03-27T12:25:17,605   copying pymlst/wg/commands/add2.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,607   copying pymlst/wg/commands/recombination.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,609   copying pymlst/wg/commands/msa.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,611   copying pymlst/wg/commands/add.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,612   copying pymlst/wg/commands/remove.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,614   copying pymlst/wg/commands/__init__.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,616   copying pymlst/wg/commands/gene.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,617   copying pymlst/wg/commands/sequence.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,619   copying pymlst/wg/commands/stats.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,620   copying pymlst/wg/commands/distance.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,622   copying pymlst/wg/commands/create.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,624   copying pymlst/wg/commands/mlst.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,625   copying pymlst/wg/commands/import.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,627   copying pymlst/wg/commands/strain.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,629   copying pymlst/wg/commands/subgraph.py -> build/lib/pymlst/wg/commands
2026-03-27T12:25:17,631   creating build/lib/pymlst/cla/commands
2026-03-27T12:25:17,632   copying pymlst/cla/commands/info.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,634   copying pymlst/cla/commands/search.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,636   copying pymlst/cla/commands/remove.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,637   copying pymlst/cla/commands/__init__.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,639   copying pymlst/cla/commands/create.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,640   copying pymlst/cla/commands/import.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,642   copying pymlst/cla/commands/search2.py -> build/lib/pymlst/cla/commands
2026-03-27T12:25:17,644   creating build/lib/pymlst/pytyper/commands
2026-03-27T12:25:17,645   copying pymlst/pytyper/commands/search.py -> build/lib/pymlst/pytyper/commands
2026-03-27T12:25:17,647   copying pymlst/pytyper/commands/__init__.py -> build/lib/pymlst/pytyper/commands
2026-03-27T12:25:17,649   creating build/lib/pymlst/common/commands
2026-03-27T12:25:17,650   copying pymlst/common/commands/__init__.py -> build/lib/pymlst/common/commands
2026-03-27T12:25:17,652   copying pymlst/common/commands/configure.py -> build/lib/pymlst/common/commands
2026-03-27T12:25:17,653   running egg_info
2026-03-27T12:25:17,680   writing PyMLST.egg-info/PKG-INFO
2026-03-27T12:25:17,683   writing dependency_links to PyMLST.egg-info/dependency_links.txt
2026-03-27T12:25:17,685   writing entry points to PyMLST.egg-info/entry_points.txt
2026-03-27T12:25:17,686   writing requirements to PyMLST.egg-info/requires.txt
2026-03-27T12:25:17,688   writing top-level names to PyMLST.egg-info/top_level.txt
2026-03-27T12:25:17,724   reading manifest file 'PyMLST.egg-info/SOURCES.txt'
2026-03-27T12:25:17,731   reading manifest template 'MANIFEST.in'
2026-03-27T12:25:17,735   adding license file 'LICENSE'
2026-03-27T12:25:17,740   writing manifest file 'PyMLST.egg-info/SOURCES.txt'
2026-03-27T12:25:17,743   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic' is absent from the `packages` configuration.
2026-03-27T12:25:17,743   !!

2026-03-27T12:25:17,745           ********************************************************************************
2026-03-27T12:25:17,745           ############################
2026-03-27T12:25:17,746           # Package would be ignored #
2026-03-27T12:25:17,747           ############################
2026-03-27T12:25:17,747           Python recognizes 'pymlst.data.alembic' as an importable package[^1],
2026-03-27T12:25:17,748           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,749           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,750           package, please make sure that 'pymlst.data.alembic' is explicitly added
2026-03-27T12:25:17,750           to the `packages` configuration field.

2026-03-27T12:25:17,751           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,752           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,752           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,753           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,754           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,755           If you don't want 'pymlst.data.alembic' to be distributed and are
2026-03-27T12:25:17,755           already explicitly excluding 'pymlst.data.alembic' via
2026-03-27T12:25:17,755           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,756           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,756           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,757           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,758           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,760           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,760                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,761                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,761                 directory, all directories are treated like packages.
2026-03-27T12:25:17,762           ********************************************************************************

2026-03-27T12:25:17,762   !!
2026-03-27T12:25:17,763     check.warn(importable)
2026-03-27T12:25:17,764   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.cla' is absent from the `packages` configuration.
2026-03-27T12:25:17,764   !!

2026-03-27T12:25:17,765           ********************************************************************************
2026-03-27T12:25:17,766           ############################
2026-03-27T12:25:17,766           # Package would be ignored #
2026-03-27T12:25:17,767           ############################
2026-03-27T12:25:17,767           Python recognizes 'pymlst.data.alembic.cla' as an importable package[^1],
2026-03-27T12:25:17,768           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,769           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,770           package, please make sure that 'pymlst.data.alembic.cla' is explicitly added
2026-03-27T12:25:17,770           to the `packages` configuration field.

2026-03-27T12:25:17,771           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,771           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,772           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,773           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,774           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,775           If you don't want 'pymlst.data.alembic.cla' to be distributed and are
2026-03-27T12:25:17,776           already explicitly excluding 'pymlst.data.alembic.cla' via
2026-03-27T12:25:17,776           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,777           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,778           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,779           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,780           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,781           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,781                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,782                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,782                 directory, all directories are treated like packages.
2026-03-27T12:25:17,783           ********************************************************************************

2026-03-27T12:25:17,784   !!
2026-03-27T12:25:17,784     check.warn(importable)
2026-03-27T12:25:17,785   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.cla.versions' is absent from the `packages` configuration.
2026-03-27T12:25:17,785   !!

2026-03-27T12:25:17,786           ********************************************************************************
2026-03-27T12:25:17,786           ############################
2026-03-27T12:25:17,787           # Package would be ignored #
2026-03-27T12:25:17,788           ############################
2026-03-27T12:25:17,788           Python recognizes 'pymlst.data.alembic.cla.versions' as an importable package[^1],
2026-03-27T12:25:17,788           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,789           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,790           package, please make sure that 'pymlst.data.alembic.cla.versions' is explicitly added
2026-03-27T12:25:17,790           to the `packages` configuration field.

2026-03-27T12:25:17,791           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,792           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,792           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,793           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,794           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,795           If you don't want 'pymlst.data.alembic.cla.versions' to be distributed and are
2026-03-27T12:25:17,796           already explicitly excluding 'pymlst.data.alembic.cla.versions' via
2026-03-27T12:25:17,796           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,797           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,797           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,798           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,799           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,801           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,802                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,802                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,803                 directory, all directories are treated like packages.
2026-03-27T12:25:17,804           ********************************************************************************

2026-03-27T12:25:17,805   !!
2026-03-27T12:25:17,805     check.warn(importable)
2026-03-27T12:25:17,806   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.pytyper' is absent from the `packages` configuration.
2026-03-27T12:25:17,807   !!

2026-03-27T12:25:17,808           ********************************************************************************
2026-03-27T12:25:17,809           ############################
2026-03-27T12:25:17,810           # Package would be ignored #
2026-03-27T12:25:17,810           ############################
2026-03-27T12:25:17,810           Python recognizes 'pymlst.data.alembic.pytyper' as an importable package[^1],
2026-03-27T12:25:17,811           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,812           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,813           package, please make sure that 'pymlst.data.alembic.pytyper' is explicitly added
2026-03-27T12:25:17,813           to the `packages` configuration field.

2026-03-27T12:25:17,815           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,815           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,816           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,817           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,818           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,819           If you don't want 'pymlst.data.alembic.pytyper' to be distributed and are
2026-03-27T12:25:17,819           already explicitly excluding 'pymlst.data.alembic.pytyper' via
2026-03-27T12:25:17,820           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,820           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,821           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,822           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,823           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,825           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,826                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,827                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,827                 directory, all directories are treated like packages.
2026-03-27T12:25:17,828           ********************************************************************************

2026-03-27T12:25:17,829   !!
2026-03-27T12:25:17,830     check.warn(importable)
2026-03-27T12:25:17,830   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.pytyper.versions' is absent from the `packages` configuration.
2026-03-27T12:25:17,831   !!

2026-03-27T12:25:17,832           ********************************************************************************
2026-03-27T12:25:17,833           ############################
2026-03-27T12:25:17,833           # Package would be ignored #
2026-03-27T12:25:17,834           ############################
2026-03-27T12:25:17,834           Python recognizes 'pymlst.data.alembic.pytyper.versions' as an importable package[^1],
2026-03-27T12:25:17,835           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,836           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,836           package, please make sure that 'pymlst.data.alembic.pytyper.versions' is explicitly added
2026-03-27T12:25:17,837           to the `packages` configuration field.

2026-03-27T12:25:17,838           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,839           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,839           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,841           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,842           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,844           If you don't want 'pymlst.data.alembic.pytyper.versions' to be distributed and are
2026-03-27T12:25:17,844           already explicitly excluding 'pymlst.data.alembic.pytyper.versions' via
2026-03-27T12:25:17,845           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,845           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,846           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,846           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,847           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,849           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,849                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,850                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,850                 directory, all directories are treated like packages.
2026-03-27T12:25:17,851           ********************************************************************************

2026-03-27T12:25:17,852   !!
2026-03-27T12:25:17,852     check.warn(importable)
2026-03-27T12:25:17,853   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.wg' is absent from the `packages` configuration.
2026-03-27T12:25:17,853   !!

2026-03-27T12:25:17,854           ********************************************************************************
2026-03-27T12:25:17,854           ############################
2026-03-27T12:25:17,855           # Package would be ignored #
2026-03-27T12:25:17,856           ############################
2026-03-27T12:25:17,856           Python recognizes 'pymlst.data.alembic.wg' as an importable package[^1],
2026-03-27T12:25:17,857           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,858           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,859           package, please make sure that 'pymlst.data.alembic.wg' is explicitly added
2026-03-27T12:25:17,859           to the `packages` configuration field.

2026-03-27T12:25:17,860           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,861           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,862           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,863           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,864           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,865           If you don't want 'pymlst.data.alembic.wg' to be distributed and are
2026-03-27T12:25:17,866           already explicitly excluding 'pymlst.data.alembic.wg' via
2026-03-27T12:25:17,866           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,867           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,868           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,869           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,870           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,872           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,872                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,873                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,873                 directory, all directories are treated like packages.
2026-03-27T12:25:17,874           ********************************************************************************

2026-03-27T12:25:17,876   !!
2026-03-27T12:25:17,876     check.warn(importable)
2026-03-27T12:25:17,877   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.alembic.wg.versions' is absent from the `packages` configuration.
2026-03-27T12:25:17,877   !!

2026-03-27T12:25:17,878           ********************************************************************************
2026-03-27T12:25:17,878           ############################
2026-03-27T12:25:17,879           # Package would be ignored #
2026-03-27T12:25:17,879           ############################
2026-03-27T12:25:17,880           Python recognizes 'pymlst.data.alembic.wg.versions' as an importable package[^1],
2026-03-27T12:25:17,880           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,881           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,882           package, please make sure that 'pymlst.data.alembic.wg.versions' is explicitly added
2026-03-27T12:25:17,882           to the `packages` configuration field.

2026-03-27T12:25:17,883           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,884           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,884           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,885           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,886           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,887           If you don't want 'pymlst.data.alembic.wg.versions' to be distributed and are
2026-03-27T12:25:17,888           already explicitly excluding 'pymlst.data.alembic.wg.versions' via
2026-03-27T12:25:17,888           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,889           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,890           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,891           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,892           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,894           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,895                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,896                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,896                 directory, all directories are treated like packages.
2026-03-27T12:25:17,897           ********************************************************************************

2026-03-27T12:25:17,898   !!
2026-03-27T12:25:17,899     check.warn(importable)
2026-03-27T12:25:17,899   /usr/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pymlst.data.pytyper' is absent from the `packages` configuration.
2026-03-27T12:25:17,900   !!

2026-03-27T12:25:17,901           ********************************************************************************
2026-03-27T12:25:17,901           ############################
2026-03-27T12:25:17,902           # Package would be ignored #
2026-03-27T12:25:17,902           ############################
2026-03-27T12:25:17,903           Python recognizes 'pymlst.data.pytyper' as an importable package[^1],
2026-03-27T12:25:17,903           but it is absent from setuptools' `packages` configuration.

2026-03-27T12:25:17,905           This leads to an ambiguous overall configuration. If you want to distribute this
2026-03-27T12:25:17,905           package, please make sure that 'pymlst.data.pytyper' is explicitly added
2026-03-27T12:25:17,906           to the `packages` configuration field.

2026-03-27T12:25:17,907           Alternatively, you can also rely on setuptools' discovery methods
2026-03-27T12:25:17,908           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-03-27T12:25:17,909           instead of `find_packages(...)`/`find:`).

2026-03-27T12:25:17,910           You can read more about "package discovery" on setuptools documentation page:

2026-03-27T12:25:17,911           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-03-27T12:25:17,911           If you don't want 'pymlst.data.pytyper' to be distributed and are
2026-03-27T12:25:17,912           already explicitly excluding 'pymlst.data.pytyper' via
2026-03-27T12:25:17,912           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-03-27T12:25:17,912           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-03-27T12:25:17,913           combination with a more fine grained `package-data` configuration.

2026-03-27T12:25:17,914           You can read more about "package data files" on setuptools documentation page:

2026-03-27T12:25:17,915           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-03-27T12:25:17,916           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-03-27T12:25:17,916                 even if it does not contain any `.py` files.
2026-03-27T12:25:17,917                 On the other hand, currently there is no concept of package data
2026-03-27T12:25:17,917                 directory, all directories are treated like packages.
2026-03-27T12:25:17,918           ********************************************************************************

2026-03-27T12:25:17,919   !!
2026-03-27T12:25:17,919     check.warn(importable)
2026-03-27T12:25:17,920   creating build/lib/pymlst/data/alembic
2026-03-27T12:25:17,920   copying pymlst/data/alembic/alembic.ini -> build/lib/pymlst/data/alembic
2026-03-27T12:25:17,921   creating build/lib/pymlst/data/alembic/cla
2026-03-27T12:25:17,922   copying pymlst/data/alembic/cla/env.py -> build/lib/pymlst/data/alembic/cla
2026-03-27T12:25:17,922   copying pymlst/data/alembic/cla/script.py.mako -> build/lib/pymlst/data/alembic/cla
2026-03-27T12:25:17,923   creating build/lib/pymlst/data/alembic/cla/versions
2026-03-27T12:25:17,924   copying pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/lib/pymlst/data/alembic/cla/versions
2026-03-27T12:25:17,924   copying pymlst/data/alembic/cla/versions/c0f871a99d96_add_database_infos.py -> build/lib/pymlst/data/alembic/cla/versions
2026-03-27T12:25:17,925   creating build/lib/pymlst/data/alembic/pytyper
2026-03-27T12:25:17,925   copying pymlst/data/alembic/pytyper/env.py -> build/lib/pymlst/data/alembic/pytyper
2026-03-27T12:25:17,926   copying pymlst/data/alembic/pytyper/script.py.mako -> build/lib/pymlst/data/alembic/pytyper
2026-03-27T12:25:17,927   creating build/lib/pymlst/data/alembic/pytyper/versions
2026-03-27T12:25:17,927   copying pymlst/data/alembic/pytyper/versions/1f96d027f4aa_initial.py -> build/lib/pymlst/data/alembic/pytyper/versions
2026-03-27T12:25:17,928   creating build/lib/pymlst/data/alembic/wg
2026-03-27T12:25:17,928   copying pymlst/data/alembic/wg/env.py -> build/lib/pymlst/data/alembic/wg
2026-03-27T12:25:17,929   copying pymlst/data/alembic/wg/script.py.mako -> build/lib/pymlst/data/alembic/wg
2026-03-27T12:25:17,930   creating build/lib/pymlst/data/alembic/wg/versions
2026-03-27T12:25:17,930   copying pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/lib/pymlst/data/alembic/wg/versions
2026-03-27T12:25:17,931   copying pymlst/data/alembic/wg/versions/a793f8f3fd83_add_database_infos.py -> build/lib/pymlst/data/alembic/wg/versions
2026-03-27T12:25:17,931   creating build/lib/pymlst/data/pytyper
2026-03-27T12:25:17,932   copying pymlst/data/pytyper/clmt.fna -> build/lib/pymlst/data/pytyper
2026-03-27T12:25:17,933   copying pymlst/data/pytyper/clmt.txt -> build/lib/pymlst/data/pytyper
2026-03-27T12:25:17,933   copying pymlst/data/pytyper/fimh.fna -> build/lib/pymlst/data/pytyper
2026-03-27T12:25:17,934   copying pymlst/data/pytyper/spa.fna -> build/lib/pymlst/data/pytyper
2026-03-27T12:25:17,934   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-03-27T12:25:17,935   !!

2026-03-27T12:25:17,936           ********************************************************************************
2026-03-27T12:25:17,936           Please avoid running ``setup.py`` directly.
2026-03-27T12:25:17,937           Instead, use pypa/build, pypa/installer or other
2026-03-27T12:25:17,937           standards-based tools.

2026-03-27T12:25:17,938           This deprecation is overdue, please update your project and remove deprecated
2026-03-27T12:25:17,939           calls to avoid build errors in the future.

2026-03-27T12:25:17,940           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-03-27T12:25:17,940           ********************************************************************************

2026-03-27T12:25:17,941   !!
2026-03-27T12:25:17,941     self.initialize_options()
2026-03-27T12:25:17,942   installing to build/bdist.linux-armv7l/wheel
2026-03-27T12:25:17,942   running install
2026-03-27T12:25:17,943   running install_lib
2026-03-27T12:25:17,950   creating build/bdist.linux-armv7l/wheel
2026-03-27T12:25:17,953   creating build/bdist.linux-armv7l/wheel/pymlst
2026-03-27T12:25:17,954   copying build/lib/pymlst/cmd.py -> build/bdist.linux-armv7l/wheel/./pymlst
2026-03-27T12:25:17,957   creating build/bdist.linux-armv7l/wheel/pymlst/wg
2026-03-27T12:25:17,958   copying build/lib/pymlst/wg/extractors.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg
2026-03-27T12:25:17,960   copying build/lib/pymlst/wg/core.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg
2026-03-27T12:25:17,963   copying build/lib/pymlst/wg/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg
2026-03-27T12:25:17,965   copying build/lib/pymlst/wg/model.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg
2026-03-27T12:25:17,968   creating build/bdist.linux-armv7l/wheel/pymlst/wg/commands
2026-03-27T12:25:17,969   copying build/lib/pymlst/wg/commands/add2.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,970   copying build/lib/pymlst/wg/commands/recombination.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,972   copying build/lib/pymlst/wg/commands/msa.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,974   copying build/lib/pymlst/wg/commands/add.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,976   copying build/lib/pymlst/wg/commands/remove.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,978   copying build/lib/pymlst/wg/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,979   copying build/lib/pymlst/wg/commands/gene.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,981   copying build/lib/pymlst/wg/commands/sequence.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,983   copying build/lib/pymlst/wg/commands/stats.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,984   copying build/lib/pymlst/wg/commands/distance.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,986   copying build/lib/pymlst/wg/commands/create.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,988   copying build/lib/pymlst/wg/commands/mlst.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,990   copying build/lib/pymlst/wg/commands/import.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,992   copying build/lib/pymlst/wg/commands/strain.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,994   copying build/lib/pymlst/wg/commands/subgraph.py -> build/bdist.linux-armv7l/wheel/./pymlst/wg/commands
2026-03-27T12:25:17,996   creating build/bdist.linux-armv7l/wheel/pymlst/cla
2026-03-27T12:25:17,997   copying build/lib/pymlst/cla/core.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla
2026-03-27T12:25:18,000   copying build/lib/pymlst/cla/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla
2026-03-27T12:25:18,001   copying build/lib/pymlst/cla/model.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla
2026-03-27T12:25:18,004   creating build/bdist.linux-armv7l/wheel/pymlst/cla/commands
2026-03-27T12:25:18,005   copying build/lib/pymlst/cla/commands/info.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,006   copying build/lib/pymlst/cla/commands/search.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,008   copying build/lib/pymlst/cla/commands/remove.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,010   copying build/lib/pymlst/cla/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,011   copying build/lib/pymlst/cla/commands/create.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,012   copying build/lib/pymlst/cla/commands/import.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,014   copying build/lib/pymlst/cla/commands/search2.py -> build/bdist.linux-armv7l/wheel/./pymlst/cla/commands
2026-03-27T12:25:18,017   creating build/bdist.linux-armv7l/wheel/pymlst/data
2026-03-27T12:25:18,018   creating build/bdist.linux-armv7l/wheel/pymlst/data/pytyper
2026-03-27T12:25:18,019   copying build/lib/pymlst/data/pytyper/fimh.fna -> build/bdist.linux-armv7l/wheel/./pymlst/data/pytyper
2026-03-27T12:25:18,021   copying build/lib/pymlst/data/pytyper/clmt.txt -> build/bdist.linux-armv7l/wheel/./pymlst/data/pytyper
2026-03-27T12:25:18,023   copying build/lib/pymlst/data/pytyper/spa.fna -> build/bdist.linux-armv7l/wheel/./pymlst/data/pytyper
2026-03-27T12:25:18,024   copying build/lib/pymlst/data/pytyper/clmt.fna -> build/bdist.linux-armv7l/wheel/./pymlst/data/pytyper
2026-03-27T12:25:18,027   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic
2026-03-27T12:25:18,028   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg
2026-03-27T12:25:18,030   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/wg/versions
2026-03-27T12:25:18,031   copying build/lib/pymlst/data/alembic/wg/versions/a793f8f3fd83_add_database_infos.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/wg/versions
2026-03-27T12:25:18,033   copying build/lib/pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/wg/versions
2026-03-27T12:25:18,035   copying build/lib/pymlst/data/alembic/wg/env.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/wg
2026-03-27T12:25:18,037   copying build/lib/pymlst/data/alembic/wg/script.py.mako -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/wg
2026-03-27T12:25:18,040   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla
2026-03-27T12:25:18,041   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/cla/versions
2026-03-27T12:25:18,042   copying build/lib/pymlst/data/alembic/cla/versions/21efe503d07d_initial.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/cla/versions
2026-03-27T12:25:18,044   copying build/lib/pymlst/data/alembic/cla/versions/c0f871a99d96_add_database_infos.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/cla/versions
2026-03-27T12:25:18,046   copying build/lib/pymlst/data/alembic/cla/env.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/cla
2026-03-27T12:25:18,048   copying build/lib/pymlst/data/alembic/cla/script.py.mako -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/cla
2026-03-27T12:25:18,050   copying build/lib/pymlst/data/alembic/alembic.ini -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic
2026-03-27T12:25:18,052   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/pytyper
2026-03-27T12:25:18,054   creating build/bdist.linux-armv7l/wheel/pymlst/data/alembic/pytyper/versions
2026-03-27T12:25:18,055   copying build/lib/pymlst/data/alembic/pytyper/versions/1f96d027f4aa_initial.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/pytyper/versions
2026-03-27T12:25:18,057   copying build/lib/pymlst/data/alembic/pytyper/env.py -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/pytyper
2026-03-27T12:25:18,059   copying build/lib/pymlst/data/alembic/pytyper/script.py.mako -> build/bdist.linux-armv7l/wheel/./pymlst/data/alembic/pytyper
2026-03-27T12:25:18,060   copying build/lib/pymlst/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst
2026-03-27T12:25:18,062   creating build/bdist.linux-armv7l/wheel/pymlst/pytyper
2026-03-27T12:25:18,063   copying build/lib/pymlst/pytyper/core.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper
2026-03-27T12:25:18,066   copying build/lib/pymlst/pytyper/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper
2026-03-27T12:25:18,067   copying build/lib/pymlst/pytyper/method.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper
2026-03-27T12:25:18,069   copying build/lib/pymlst/pytyper/model.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper
2026-03-27T12:25:18,071   copying build/lib/pymlst/pytyper/url.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper
2026-03-27T12:25:18,073   creating build/bdist.linux-armv7l/wheel/pymlst/pytyper/commands
2026-03-27T12:25:18,074   copying build/lib/pymlst/pytyper/commands/search.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper/commands
2026-03-27T12:25:18,076   copying build/lib/pymlst/pytyper/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/pytyper/commands
2026-03-27T12:25:18,083   copying build/lib/pymlst/version.py -> build/bdist.linux-armv7l/wheel/./pymlst
2026-03-27T12:25:18,085   copying build/lib/pymlst/config.py -> build/bdist.linux-armv7l/wheel/./pymlst
2026-03-27T12:25:18,087   creating build/bdist.linux-armv7l/wheel/pymlst/common
2026-03-27T12:25:18,088   copying build/lib/pymlst/common/flag.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,090   copying build/lib/pymlst/common/exceptions.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,092   copying build/lib/pymlst/common/mafft.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,093   copying build/lib/pymlst/common/web.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,095   copying build/lib/pymlst/common/kma.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,098   copying build/lib/pymlst/common/utils.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,100   copying build/lib/pymlst/common/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,101   creating build/bdist.linux-armv7l/wheel/pymlst/common/commands
2026-03-27T12:25:18,102   copying build/lib/pymlst/common/commands/__init__.py -> build/bdist.linux-armv7l/wheel/./pymlst/common/commands
2026-03-27T12:25:18,104   copying build/lib/pymlst/common/commands/configure.py -> build/bdist.linux-armv7l/wheel/./pymlst/common/commands
2026-03-27T12:25:18,106   copying build/lib/pymlst/common/blat.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,108   copying build/lib/pymlst/common/psl.py -> build/bdist.linux-armv7l/wheel/./pymlst/common
2026-03-27T12:25:18,109   running install_egg_info
2026-03-27T12:25:18,138   Copying PyMLST.egg-info to build/bdist.linux-armv7l/wheel/./PyMLST-2.3.1-py3.11.egg-info
2026-03-27T12:25:18,148   running install_scripts
2026-03-27T12:25:18,160   creating build/bdist.linux-armv7l/wheel/pymlst-2.3.1.dist-info/WHEEL
2026-03-27T12:25:18,162   creating '/tmp/pip-wheel-kc56xq17/pymlst-2.3.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-27T12:25:18,164   adding 'pymlst/__init__.py'
2026-03-27T12:25:18,166   adding 'pymlst/cmd.py'
2026-03-27T12:25:18,167   adding 'pymlst/config.py'
2026-03-27T12:25:18,168   adding 'pymlst/version.py'
2026-03-27T12:25:18,170   adding 'pymlst/cla/__init__.py'
2026-03-27T12:25:18,173   adding 'pymlst/cla/core.py'
2026-03-27T12:25:18,175   adding 'pymlst/cla/model.py'
2026-03-27T12:25:18,177   adding 'pymlst/cla/commands/__init__.py'
2026-03-27T12:25:18,178   adding 'pymlst/cla/commands/create.py'
2026-03-27T12:25:18,179   adding 'pymlst/cla/commands/import.py'
2026-03-27T12:25:18,180   adding 'pymlst/cla/commands/info.py'
2026-03-27T12:25:18,181   adding 'pymlst/cla/commands/remove.py'
2026-03-27T12:25:18,182   adding 'pymlst/cla/commands/search.py'
2026-03-27T12:25:18,184   adding 'pymlst/cla/commands/search2.py'
2026-03-27T12:25:18,185   adding 'pymlst/common/__init__.py'
2026-03-27T12:25:18,186   adding 'pymlst/common/blat.py'
2026-03-27T12:25:18,187   adding 'pymlst/common/exceptions.py'
2026-03-27T12:25:18,188   adding 'pymlst/common/flag.py'
2026-03-27T12:25:18,190   adding 'pymlst/common/kma.py'
2026-03-27T12:25:18,191   adding 'pymlst/common/mafft.py'
2026-03-27T12:25:18,192   adding 'pymlst/common/psl.py'
2026-03-27T12:25:18,194   adding 'pymlst/common/utils.py'
2026-03-27T12:25:18,196   adding 'pymlst/common/web.py'
2026-03-27T12:25:18,197   adding 'pymlst/common/commands/__init__.py'
2026-03-27T12:25:18,198   adding 'pymlst/common/commands/configure.py'
2026-03-27T12:25:18,200   adding 'pymlst/data/alembic/alembic.ini'
2026-03-27T12:25:18,202   adding 'pymlst/data/alembic/cla/env.py'
2026-03-27T12:25:18,203   adding 'pymlst/data/alembic/cla/script.py.mako'
2026-03-27T12:25:18,205   adding 'pymlst/data/alembic/cla/versions/21efe503d07d_initial.py'
2026-03-27T12:25:18,206   adding 'pymlst/data/alembic/cla/versions/c0f871a99d96_add_database_infos.py'
2026-03-27T12:25:18,208   adding 'pymlst/data/alembic/pytyper/env.py'
2026-03-27T12:25:18,209   adding 'pymlst/data/alembic/pytyper/script.py.mako'
2026-03-27T12:25:18,211   adding 'pymlst/data/alembic/pytyper/versions/1f96d027f4aa_initial.py'
2026-03-27T12:25:18,213   adding 'pymlst/data/alembic/wg/env.py'
2026-03-27T12:25:18,214   adding 'pymlst/data/alembic/wg/script.py.mako'
2026-03-27T12:25:18,216   adding 'pymlst/data/alembic/wg/versions/52ae99cb5f33_initial.py'
2026-03-27T12:25:18,218   adding 'pymlst/data/alembic/wg/versions/a793f8f3fd83_add_database_infos.py'
2026-03-27T12:25:18,221   adding 'pymlst/data/pytyper/clmt.fna'
2026-03-27T12:25:18,222   adding 'pymlst/data/pytyper/clmt.txt'
2026-03-27T12:25:18,224   adding 'pymlst/data/pytyper/fimh.fna'
2026-03-27T12:25:18,225   adding 'pymlst/data/pytyper/spa.fna'
2026-03-27T12:25:18,227   adding 'pymlst/pytyper/__init__.py'
2026-03-27T12:25:18,230   adding 'pymlst/pytyper/core.py'
2026-03-27T12:25:18,231   adding 'pymlst/pytyper/method.py'
2026-03-27T12:25:18,232   adding 'pymlst/pytyper/model.py'
2026-03-27T12:25:18,233   adding 'pymlst/pytyper/url.py'
2026-03-27T12:25:18,235   adding 'pymlst/pytyper/commands/__init__.py'
2026-03-27T12:25:18,236   adding 'pymlst/pytyper/commands/search.py'
2026-03-27T12:25:18,238   adding 'pymlst/wg/__init__.py'
2026-03-27T12:25:18,242   adding 'pymlst/wg/core.py'
2026-03-27T12:25:18,244   adding 'pymlst/wg/extractors.py'
2026-03-27T12:25:18,246   adding 'pymlst/wg/model.py'
2026-03-27T12:25:18,247   adding 'pymlst/wg/commands/__init__.py'
2026-03-27T12:25:18,249   adding 'pymlst/wg/commands/add.py'
2026-03-27T12:25:18,250   adding 'pymlst/wg/commands/add2.py'
2026-03-27T12:25:18,251   adding 'pymlst/wg/commands/create.py'
2026-03-27T12:25:18,252   adding 'pymlst/wg/commands/distance.py'
2026-03-27T12:25:18,254   adding 'pymlst/wg/commands/gene.py'
2026-03-27T12:25:18,255   adding 'pymlst/wg/commands/import.py'
2026-03-27T12:25:18,256   adding 'pymlst/wg/commands/mlst.py'
2026-03-27T12:25:18,258   adding 'pymlst/wg/commands/msa.py'
2026-03-27T12:25:18,259   adding 'pymlst/wg/commands/recombination.py'
2026-03-27T12:25:18,260   adding 'pymlst/wg/commands/remove.py'
2026-03-27T12:25:18,262   adding 'pymlst/wg/commands/sequence.py'
2026-03-27T12:25:18,263   adding 'pymlst/wg/commands/stats.py'
2026-03-27T12:25:18,264   adding 'pymlst/wg/commands/strain.py'
2026-03-27T12:25:18,265   adding 'pymlst/wg/commands/subgraph.py'
2026-03-27T12:25:18,268   adding 'pymlst-2.3.1.dist-info/licenses/LICENSE'
2026-03-27T12:25:18,269   adding 'pymlst-2.3.1.dist-info/METADATA'
2026-03-27T12:25:18,270   adding 'pymlst-2.3.1.dist-info/WHEEL'
2026-03-27T12:25:18,271   adding 'pymlst-2.3.1.dist-info/entry_points.txt'
2026-03-27T12:25:18,272   adding 'pymlst-2.3.1.dist-info/top_level.txt'
2026-03-27T12:25:18,274   adding 'pymlst-2.3.1.dist-info/RECORD'
2026-03-27T12:25:18,277   removing build/bdist.linux-armv7l/wheel
2026-03-27T12:25:18,406   Building wheel for pymlst (setup.py): finished with status 'done'
2026-03-27T12:25:18,409   Created wheel for pymlst: filename=pymlst-2.3.1-py3-none-any.whl size=72297 sha256=7432971b857b67f93e0685de572141e2c28f0cb0a9d43af9d1ce0cdfacaa6992
2026-03-27T12:25:18,410   Stored in directory: /tmp/pip-ephem-wheel-cache-mpag2chz/wheels/eb/f0/96/f5a57e16ea90ebda8fad5df8f0a22676a4e0c1b4c13fef0e76
2026-03-27T12:25:18,422 Successfully built pymlst
2026-03-27T12:25:18,427 Removed build tracker: '/tmp/pip-build-tracker-1_sbhnm2'