2026-03-30T15:41:50,352 Created temporary directory: /tmp/pip-ephem-wheel-cache-v8wktgyc
2026-03-30T15:41:50,354 Created temporary directory: /tmp/pip-build-tracker-_kh50f_9
2026-03-30T15:41:50,355 Initialized build tracking at /tmp/pip-build-tracker-_kh50f_9
2026-03-30T15:41:50,355 Created build tracker: /tmp/pip-build-tracker-_kh50f_9
2026-03-30T15:41:50,356 Entered build tracker: /tmp/pip-build-tracker-_kh50f_9
2026-03-30T15:41:50,356 Created temporary directory: /tmp/pip-wheel-aobjkr2l
2026-03-30T15:41:50,359 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-30T15:41:50,362 Created temporary directory: /tmp/pip-ephem-wheel-cache-xkshj8_n
2026-03-30T15:41:50,384 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-30T15:41:50,387 2 location(s) to search for versions of bioemu:
2026-03-30T15:41:50,387 * https://pypi.org/simple/bioemu/
2026-03-30T15:41:50,387 * https://www.piwheels.org/simple/bioemu/
2026-03-30T15:41:50,388 Fetching project page and analyzing links: https://pypi.org/simple/bioemu/
2026-03-30T15:41:50,389 Getting page https://pypi.org/simple/bioemu/
2026-03-30T15:41:50,390 Found index url https://pypi.org/simple
2026-03-30T15:41:50,615 Fetched page https://pypi.org/simple/bioemu/ as application/vnd.pypi.simple.v1+json
2026-03-30T15:41:50,623   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/7f/73/385b4d0f12526f07e057d9376aac3cb9e1330645a8f19f152b66449673c2/bioemu-0.1.0-py3-none-any.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,624   Found link https://files.pythonhosted.org/packages/f4/17/c9b9eed09b6e1d2aadd97218e86396a94d11258e693e238cf7955cc60731/bioemu-0.1.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.0
2026-03-30T15:41:50,625   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/1a/0f/aefef09b86846f3f1cd1b4fa80303f56a368fcba8e4ad1d64cd68b29fd30/bioemu-0.1.2-py3-none-any.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,626   Found link https://files.pythonhosted.org/packages/82/44/14618cc8b0a6e1c960c0c13d5dec330f7971096558fc43d6b21007173cfa/bioemu-0.1.2.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.2
2026-03-30T15:41:50,627   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/17/75/32569c710c9e16d898da69948b405253de8fd75196215f98990bbabb01f0/bioemu-0.1.3-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,628   Found link https://files.pythonhosted.org/packages/fd/4b/e95da2528523db786ed87e9bd090e1441f503926652919c46b898a9aeb49/bioemu-0.1.3.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.3
2026-03-30T15:41:50,628   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/06/7b/23c1629b9497c71202d2cd1fed491b86b0d6e5e9d60cad3ee5fc21814832/bioemu-0.1.4-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,629   Found link https://files.pythonhosted.org/packages/fc/1f/7e9869fcf1bcb4047d283613879e6ca9d3af43c3ee5b9f6613a3920b8c13/bioemu-0.1.4.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.4
2026-03-30T15:41:50,630   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/b3/ea/2b1ad9ca3235573f8567e8f9cbf22cf2410ecb846cc8b98dd297763b7d73/bioemu-0.1.5a1-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,631   Found link https://files.pythonhosted.org/packages/c1/89/ff381aac4a74e70ef5177a00abd82a420620144c7999627ff79f150ab70e/bioemu-0.1.5a1.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a1
2026-03-30T15:41:50,632   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/49/c1/01704b3d4b4f35aef31a3822cbc552455d652bc201106ebebc63bd7048a4/bioemu-0.1.5a2-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,633   Found link https://files.pythonhosted.org/packages/d3/6d/10dd1e1a87407286d2c24b308e4e6a7e0c86957ead398a312cef48049a6d/bioemu-0.1.5a2.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a2
2026-03-30T15:41:50,633   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/4a/5c/48400b7d17dee46f12e8cad7eac08ff97f20282c6383e17076ee2df15321/bioemu-0.1.5a3-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,634   Found link https://files.pythonhosted.org/packages/2a/b8/b6440f4e40d8fbcde038d64508b2a619627ef4fb340a03d80f56bc2027ff/bioemu-0.1.5a3.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a3
2026-03-30T15:41:50,635   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c0/fa/cc9f2e4b1f56f9dd9daa684ddafed96124fa92dea97781e6f62e4514db5f/bioemu-0.1.5a4-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,636   Found link https://files.pythonhosted.org/packages/a3/d7/ab25c136d813ee90c56bec1a3a329b9fc18c2e5a7307f003d5e6a24e9f1c/bioemu-0.1.5a4.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5a4
2026-03-30T15:41:50,636   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/65/1b/2918674f25fbfa623f21680cb080245cd879cfe7633eb0a44e24c0ab021c/bioemu-0.1.5-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,637   Found link https://files.pythonhosted.org/packages/4c/fb/e3a9a6bacfefa12eafa9d5a4c7e7757905f57960daa0c174d8c1aac7a985/bioemu-0.1.5.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.5
2026-03-30T15:41:50,638   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/99/fe/d58cb9d216a0c73b7747aa98788585efe09d021cf7f60e91cb324aebdb89/bioemu-0.1.6-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,639   Found link https://files.pythonhosted.org/packages/36/94/6df2a9864432487aa1a69c7778018106820ce6eccc142c4237101fafb1d5/bioemu-0.1.6.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.6
2026-03-30T15:41:50,640   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/be/83/235999d0a926b965f30374c2206c75b371a46d93eeb67ec76016526380da/bioemu-0.1.7-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,641   Found link https://files.pythonhosted.org/packages/27/00/c769ded90b77de421ecc8c70567a418edb4a60ab3f6e30eb7e16c3ee6b65/bioemu-0.1.7.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.7
2026-03-30T15:41:50,641   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/bd/d5/02d58f59f3c75dbcbbb761727fb16f48504266c13e94390add230e9b92b7/bioemu-0.1.8-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,642   Found link https://files.pythonhosted.org/packages/81/8a/a2b37bcb17eff8f908f6c21d0b096949e5176b221ab42f37f9d0eade8c8b/bioemu-0.1.8.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.8
2026-03-30T15:41:50,643   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/0f/37/d7d918c6704886f5e37fe3dca74e7ba783e6c48117a635c046d7aee56694/bioemu-0.1.9-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,644   Found link https://files.pythonhosted.org/packages/3a/8d/8cc828cf22272e3176279c88b5bf4fb98f15ffa914d5e362de969b792f53/bioemu-0.1.9.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.9
2026-03-30T15:41:50,645   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c4/29/42248a4517def4edbace87379eff5c791872ba3125c095e6b661fbff5740/bioemu-0.1.10-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,645   Found link https://files.pythonhosted.org/packages/4d/d9/35f5a97b4698ed11668a17f3488a1913d263870ded595c504363b195ac63/bioemu-0.1.10.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.10
2026-03-30T15:41:50,646   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/81/1a/44fe3508ed114ccd4b112851968e2d9755feda4d6573cd6dbfa65d44a6ec/bioemu-0.1.11-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,647   Found link https://files.pythonhosted.org/packages/ff/63/15a6848831dc7d9b8e9b6a6a4d44e46705c9febef42f5ae413111afb8094/bioemu-0.1.11.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.11
2026-03-30T15:41:50,647   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/fd/60/d61399cac78141e169a4d75c08ac8f090e2ec5abed933d05fe3d9f2d7095/bioemu-0.1.12-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,648   Found link https://files.pythonhosted.org/packages/03/66/5f94b734aad586e42f71b274235b2d14ae5cca7b758b19b989e0cc181c23/bioemu-0.1.12.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 0.1.12
2026-03-30T15:41:50,648   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/9a/84/17fd9b85bf8138eeda2a127c12838f92619a0af7179f7dc100ed50b1391d/bioemu-1.0.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,649   Found link https://files.pythonhosted.org/packages/be/f9/a1c9a3035bc232c6722778b0048344259b4d71e483df067242a35b188b06/bioemu-1.0.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.0.0
2026-03-30T15:41:50,650   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/c6/28/9dfa63cc5c863948660bc7ffebc723382ad32f29d7de02f5e0384c119b31/bioemu-1.1.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,651   Found link https://files.pythonhosted.org/packages/8c/6d/5a408d12591e72bb55f8098ba1706d38ea4b1bb1481d9e45339621e499de/bioemu-1.1.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.1.0
2026-03-30T15:41:50,652   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/d9/e2/b1a5a51d6f50e46d795327ca1bc4b50904773797f9671f58210eaa4c89c2/bioemu-1.2.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,653   Found link https://files.pythonhosted.org/packages/b0/59/08bd143435bfcd14ae550cb9ae11e145008aa38714edd27a508d8bb190c1/bioemu-1.2.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.2.0
2026-03-30T15:41:50,653   Skipping link: No binaries permitted for bioemu: https://files.pythonhosted.org/packages/32/ca/4e2fb577c9d266cc3ed10e3919ac9a36c1ec2b006cf81edf8ac44bbed96d/bioemu-1.3.0-py3-none-manylinux1_x86_64.whl (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,654   Found link https://files.pythonhosted.org/packages/d0/10/6dfb3fa364052d6dac4b817d6eedcc54406eef4f4d2fb33095cefc1708f3/bioemu-1.3.0.tar.gz (from https://pypi.org/simple/bioemu/) (requires-python:>=3.10), version: 1.3.0
2026-03-30T15:41:50,655 Fetching project page and analyzing links: https://www.piwheels.org/simple/bioemu/
2026-03-30T15:41:50,656 Getting page https://www.piwheels.org/simple/bioemu/
2026-03-30T15:41:50,657 Found index url https://www.piwheels.org/simple
2026-03-30T15:41:50,826 Fetched page https://www.piwheels.org/simple/bioemu/ as text/html
2026-03-30T15:41:50,832   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-1.2.0-py3-none-any.whl#sha256=5648f752a6e4072005e06649e9b6a1a2004ac37c462f4d8083485279cef2492d (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,833   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-1.1.0-py3-none-any.whl#sha256=75744876272afb5a8885d0b45423bf30499b645bb09d36d5d80850549b2c9d9c (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,834   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-1.0.0-py3-none-any.whl#sha256=38b41fab511a421c4d3a0febed879084e26034de5e85bf1b59739c7345f346d3 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,834   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.12-py3-none-any.whl#sha256=8a4bd96d5d2866de49e398a510cac2c768bf07e473b0feb589de554fc27b3364 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,835   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.11-py3-none-any.whl#sha256=f53242d59c84afd2d6eb33e4adb738e7c00192f06b173edffc4c0287b031a1e6 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,835   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.10-py3-none-any.whl#sha256=9e42e2ed0317a847061dbd6eab88a8e824cf82c10e2a85f67ab9d002490bffec (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,836   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.9-py3-none-any.whl#sha256=925708fd62034f50b72526b4a7f362e3d747a37b993d5227c5f43c129bc2880a (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,836   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.8-py3-none-any.whl#sha256=1a5c8419a83006ff2e57d3b081d524541ba31c867c8a18c1c9f8f57b96d03ed7 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,837   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.7-py3-none-any.whl#sha256=162a1f92e21e32cfe9559b1e102b64c6f6cb84e3cc557d9a79929187a31566de (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,837   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.6-py3-none-any.whl#sha256=c8a62d5b735af043f3bf89441e54a67f725bd35a8b340cfad6f398763e742882 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,838   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5-py3-none-any.whl#sha256=d6e1b191c4b6eae60158934c8c971a61efc989a6d7ddb753c2b1a2d9172cf208 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,839   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a4-py3-none-any.whl#sha256=fbc5cf4851bf2d573fed4e22e01b7fe04e46d37e0b2fb96b7ef4bae9d9596c7a (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,839   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a3-py3-none-any.whl#sha256=383a6f325cc8971c9a399b6dd807e8eadfb003318af3b8dda58101641d176d19 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,840   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a2-py3-none-any.whl#sha256=e442174b8d3fe55aacc2356208f9545cff7645d6ac6590b96259b548109b97fe (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,841   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.5a1-py3-none-any.whl#sha256=fa952b43870c044d6d6167e0fff92054b3cf35d9d50101d2fe9ab9ef4a55b782 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,841   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.4-py3-none-any.whl#sha256=39875d82680a02aa85280b79a9fafc5713a5b9790e3e150e838e2100d65b0167 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,842   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.3-py3-none-any.whl#sha256=900370e9b0451d6b13b524ccb75572688734872cff7eb60e1c3b0547d5c2bdd2 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,842   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.2-py3-none-any.whl#sha256=b0357e8b86035218f66b130d2f576504db808c6308e06d2e504c78eb046dce69 (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,843   Skipping link: No binaries permitted for bioemu: https://archive1.piwheels.org/simple/bioemu/bioemu-0.1.0-py3-none-any.whl#sha256=517a09bb6b9a9dd8902a43cd043d1e23b210361cd8cbebd2a8160e1b224a0fdb (from https://www.piwheels.org/simple/bioemu/) (requires-python:>=3.10)
2026-03-30T15:41:50,843 Skipping link: not a file: https://www.piwheels.org/simple/bioemu/
2026-03-30T15:41:50,844 Skipping link: not a file: https://pypi.org/simple/bioemu/
2026-03-30T15:41:50,865 Given no hashes to check 1 links for project 'bioemu': discarding no candidates
2026-03-30T15:41:50,883 Collecting bioemu==1.3.0
2026-03-30T15:41:50,885   Created temporary directory: /tmp/pip-unpack-4y3pryia
2026-03-30T15:41:51,110   Downloading bioemu-1.3.0.tar.gz (186 kB)
2026-03-30T15:41:51,629   Added bioemu==1.3.0 from https://files.pythonhosted.org/packages/d0/10/6dfb3fa364052d6dac4b817d6eedcc54406eef4f4d2fb33095cefc1708f3/bioemu-1.3.0.tar.gz to build tracker '/tmp/pip-build-tracker-_kh50f_9'
2026-03-30T15:41:51,639   Created temporary directory: /tmp/pip-build-env-tuxkd1ac
2026-03-30T15:41:51,645   Installing build dependencies: started
2026-03-30T15:41:51,647   Running command pip subprocess to install build dependencies
2026-03-30T15:41:52,822   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-03-30T15:41:53,303   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-30T15:41:53,325   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-30T15:41:55,098   Collecting setuptools
2026-03-30T15:41:55,173     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-03-30T15:41:55,441   Collecting wheel
2026-03-30T15:41:55,462     Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB)
2026-03-30T15:41:55,645   Collecting packaging>=24.0
2026-03-30T15:41:55,662     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-03-30T15:41:58,649   Installing collected packages: setuptools, packaging, wheel
2026-03-30T15:42:02,005     Creating /tmp/pip-build-env-tuxkd1ac/overlay/local/bin
2026-03-30T15:42:02,008     changing mode of /tmp/pip-build-env-tuxkd1ac/overlay/local/bin/wheel to 755
2026-03-30T15:42:02,029   Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3
2026-03-30T15:42:02,306   Installing build dependencies: finished with status 'done'
2026-03-30T15:42:02,313   Getting requirements to build wheel: started
2026-03-30T15:42:02,314   Running command Getting requirements to build wheel
2026-03-30T15:42:03,029   running egg_info
2026-03-30T15:42:03,035   writing src/bioemu.egg-info/PKG-INFO
2026-03-30T15:42:03,040   writing dependency_links to src/bioemu.egg-info/dependency_links.txt
2026-03-30T15:42:03,044   writing requirements to src/bioemu.egg-info/requires.txt
2026-03-30T15:42:03,045   writing top-level names to src/bioemu.egg-info/top_level.txt
2026-03-30T15:42:03,090   reading manifest file 'src/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:03,096   reading manifest template 'MANIFEST.in'
2026-03-30T15:42:03,099   warning: no files found matching 'src/bioemu/config/**/*.yml'
2026-03-30T15:42:03,100   adding license file 'LICENSE'
2026-03-30T15:42:03,101   adding license file 'NOTICE.md'
2026-03-30T15:42:03,106   writing manifest file 'src/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:03,204   Getting requirements to build wheel: finished with status 'done'
2026-03-30T15:42:03,208   Created temporary directory: /tmp/pip-modern-metadata-t289t0lu
2026-03-30T15:42:03,210   Preparing metadata (pyproject.toml): started
2026-03-30T15:42:03,211   Running command Preparing metadata (pyproject.toml)
2026-03-30T15:42:03,866   running dist_info
2026-03-30T15:42:03,876   creating /tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info
2026-03-30T15:42:03,878   writing /tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/PKG-INFO
2026-03-30T15:42:03,884   writing dependency_links to /tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/dependency_links.txt
2026-03-30T15:42:03,887   writing requirements to /tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/requires.txt
2026-03-30T15:42:03,888   writing top-level names to /tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/top_level.txt
2026-03-30T15:42:03,890   writing manifest file '/tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:03,927   reading manifest file '/tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:03,929   reading manifest template 'MANIFEST.in'
2026-03-30T15:42:03,932   warning: no files found matching 'src/bioemu/config/**/*.yml'
2026-03-30T15:42:03,933   adding license file 'LICENSE'
2026-03-30T15:42:03,933   adding license file 'NOTICE.md'
2026-03-30T15:42:03,938   writing manifest file '/tmp/pip-modern-metadata-t289t0lu/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:03,939   creating '/tmp/pip-modern-metadata-t289t0lu/bioemu-1.3.0.dist-info'
2026-03-30T15:42:04,065   Preparing metadata (pyproject.toml): finished with status 'done'
2026-03-30T15:42:04,070   Source in /tmp/pip-wheel-aobjkr2l/bioemu_074fd36df1e34557a3b67c6374483718 has version 1.3.0, which satisfies requirement bioemu==1.3.0 from https://files.pythonhosted.org/packages/d0/10/6dfb3fa364052d6dac4b817d6eedcc54406eef4f4d2fb33095cefc1708f3/bioemu-1.3.0.tar.gz
2026-03-30T15:42:04,071   Removed bioemu==1.3.0 from https://files.pythonhosted.org/packages/d0/10/6dfb3fa364052d6dac4b817d6eedcc54406eef4f4d2fb33095cefc1708f3/bioemu-1.3.0.tar.gz from build tracker '/tmp/pip-build-tracker-_kh50f_9'
2026-03-30T15:42:04,077 Created temporary directory: /tmp/pip-unpack-xr4nv852
2026-03-30T15:42:04,078 Building wheels for collected packages: bioemu
2026-03-30T15:42:04,083   Created temporary directory: /tmp/pip-wheel-7kcezxsf
2026-03-30T15:42:04,084   Destination directory: /tmp/pip-wheel-7kcezxsf
2026-03-30T15:42:04,086   Building wheel for bioemu (pyproject.toml): started
2026-03-30T15:42:04,087   Running command Building wheel for bioemu (pyproject.toml)
2026-03-30T15:42:04,726   running bdist_wheel
2026-03-30T15:42:04,744   running build
2026-03-30T15:42:04,745   running build_py
2026-03-30T15:42:04,751   creating build/lib/_vendor
2026-03-30T15:42:04,753   copying src/_vendor/__init__.py -> build/lib/_vendor
2026-03-30T15:42:04,756   creating build/lib/bioemu
2026-03-30T15:42:04,757   copying src/bioemu/convert_chemgraph.py -> build/lib/bioemu
2026-03-30T15:42:04,759   copying src/bioemu/sidechain_relax.py -> build/lib/bioemu
2026-03-30T15:42:04,762   copying src/bioemu/seq_io.py -> build/lib/bioemu
2026-03-30T15:42:04,763   copying src/bioemu/md_utils.py -> build/lib/bioemu
2026-03-30T15:42:04,766   copying src/bioemu/structure_module.py -> build/lib/bioemu
2026-03-30T15:42:04,768   copying src/bioemu/model_utils.py -> build/lib/bioemu
2026-03-30T15:42:04,770   copying src/bioemu/denoiser.py -> build/lib/bioemu
2026-03-30T15:42:04,773   copying src/bioemu/chemgraph.py -> build/lib/bioemu
2026-03-30T15:42:04,774   copying src/bioemu/so3_sde.py -> build/lib/bioemu
2026-03-30T15:42:04,778   copying src/bioemu/run_hpacker.py -> build/lib/bioemu
2026-03-30T15:42:04,780   copying src/bioemu/utils.py -> build/lib/bioemu
2026-03-30T15:42:04,781   copying src/bioemu/shortcuts.py -> build/lib/bioemu
2026-03-30T15:42:04,783   copying src/bioemu/get_embeds.py -> build/lib/bioemu
2026-03-30T15:42:04,785   copying src/bioemu/sde_lib.py -> build/lib/bioemu
2026-03-30T15:42:04,788   copying src/bioemu/sample.py -> build/lib/bioemu
2026-03-30T15:42:04,790   copying src/bioemu/steering.py -> build/lib/bioemu
2026-03-30T15:42:04,793   copying src/bioemu/models.py -> build/lib/bioemu
2026-03-30T15:42:04,795   copying src/bioemu/__init__.py -> build/lib/bioemu
2026-03-30T15:42:04,797   creating build/lib/_vendor/alphafold
2026-03-30T15:42:04,798   copying src/_vendor/alphafold/__init__.py -> build/lib/_vendor/alphafold
2026-03-30T15:42:04,802   creating build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,803   copying src/_vendor/alphafold/model/features.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,805   copying src/_vendor/alphafold/model/model.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,807   copying src/_vendor/alphafold/model/utils.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,809   copying src/_vendor/alphafold/model/config.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,812   copying src/_vendor/alphafold/model/mapping.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,814   copying src/_vendor/alphafold/model/prng.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,816   copying src/_vendor/alphafold/model/layer_stack.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,819   copying src/_vendor/alphafold/model/__init__.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,821   copying src/_vendor/alphafold/model/modules.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,826   copying src/_vendor/alphafold/model/common_modules.py -> build/lib/_vendor/alphafold/model
2026-03-30T15:42:04,829   creating build/lib/_vendor/alphafold/data
2026-03-30T15:42:04,830   copying src/_vendor/alphafold/data/msa_identifiers.py -> build/lib/_vendor/alphafold/data
2026-03-30T15:42:04,832   copying src/_vendor/alphafold/data/pipeline.py -> build/lib/_vendor/alphafold/data
2026-03-30T15:42:04,834   copying src/_vendor/alphafold/data/__init__.py -> build/lib/_vendor/alphafold/data
2026-03-30T15:42:04,836   copying src/_vendor/alphafold/data/parsers.py -> build/lib/_vendor/alphafold/data
2026-03-30T15:42:04,839   creating build/lib/_vendor/alphafold/common
2026-03-30T15:42:04,841   copying src/_vendor/alphafold/common/residue_constants.py -> build/lib/_vendor/alphafold/common
2026-03-30T15:42:04,844   copying src/_vendor/alphafold/common/__init__.py -> build/lib/_vendor/alphafold/common
2026-03-30T15:42:04,846   creating build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,847   copying src/_vendor/alphafold/model/tf/protein_features.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,850   copying src/_vendor/alphafold/model/tf/data_transforms.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,853   copying src/_vendor/alphafold/model/tf/shape_helpers.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,855   copying src/_vendor/alphafold/model/tf/input_pipeline.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,857   copying src/_vendor/alphafold/model/tf/shape_placeholders.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,859   copying src/_vendor/alphafold/model/tf/utils.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,861   copying src/_vendor/alphafold/model/tf/__init__.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,863   copying src/_vendor/alphafold/model/tf/proteins_dataset.py -> build/lib/_vendor/alphafold/model/tf
2026-03-30T15:42:04,866   creating build/lib/_vendor/openfold/np
2026-03-30T15:42:04,868   copying src/_vendor/openfold/np/protein.py -> build/lib/_vendor/openfold/np
2026-03-30T15:42:04,870   copying src/_vendor/openfold/np/residue_constants.py -> build/lib/_vendor/openfold/np
2026-03-30T15:42:04,874   creating build/lib/_vendor/openfold/utils
2026-03-30T15:42:04,875   copying src/_vendor/openfold/utils/rigid_utils.py -> build/lib/_vendor/openfold/utils
2026-03-30T15:42:04,878   creating build/lib/bioemu/hpacker_setup
2026-03-30T15:42:04,879   copying src/bioemu/hpacker_setup/setup_hpacker.py -> build/lib/bioemu/hpacker_setup
2026-03-30T15:42:04,881   copying src/bioemu/hpacker_setup/__init__.py -> build/lib/bioemu/hpacker_setup
2026-03-30T15:42:04,883   creating build/lib/bioemu/training
2026-03-30T15:42:04,884   copying src/bioemu/training/foldedness.py -> build/lib/bioemu/training
2026-03-30T15:42:04,886   copying src/bioemu/training/loss.py -> build/lib/bioemu/training
2026-03-30T15:42:04,889   creating build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,891   copying src/bioemu/colabfold_inline/model_runner.py -> build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,893   copying src/bioemu/colabfold_inline/input_parsing.py -> build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,895   copying src/bioemu/colabfold_inline/features.py -> build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,897   copying src/bioemu/colabfold_inline/msa_client.py -> build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,899   copying src/bioemu/colabfold_inline/__init__.py -> build/lib/bioemu/colabfold_inline
2026-03-30T15:42:04,902   running egg_info
2026-03-30T15:42:04,912   writing src/bioemu.egg-info/PKG-INFO
2026-03-30T15:42:04,917   writing dependency_links to src/bioemu.egg-info/dependency_links.txt
2026-03-30T15:42:04,920   writing requirements to src/bioemu.egg-info/requires.txt
2026-03-30T15:42:04,921   writing top-level names to src/bioemu.egg-info/top_level.txt
2026-03-30T15:42:04,948   reading manifest file 'src/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:04,954   reading manifest template 'MANIFEST.in'
2026-03-30T15:42:04,957   warning: no files found matching 'src/bioemu/config/**/*.yml'
2026-03-30T15:42:04,958   adding license file 'LICENSE'
2026-03-30T15:42:04,959   adding license file 'NOTICE.md'
2026-03-30T15:42:04,964   writing manifest file 'src/bioemu.egg-info/SOURCES.txt'
2026-03-30T15:42:04,979   copying src/_vendor/alphafold/LICENSE -> build/lib/_vendor/alphafold
2026-03-30T15:42:04,982   copying src/_vendor/alphafold/README.md -> build/lib/_vendor/alphafold
2026-03-30T15:42:04,984   creating build/lib/bioemu/config/steering
2026-03-30T15:42:04,985   copying src/bioemu/config/steering/physical_steering.yaml -> build/lib/bioemu/config/steering
2026-03-30T15:42:04,987   creating build/lib/bioemu/config/denoiser
2026-03-30T15:42:04,988   copying src/bioemu/config/denoiser/dpm.yaml -> build/lib/bioemu/config/denoiser
2026-03-30T15:42:04,991   copying src/bioemu/config/denoiser/heun.yaml -> build/lib/bioemu/config/denoiser
2026-03-30T15:42:04,993   copying src/bioemu/config/denoiser/stochastic_dpm.yaml -> build/lib/bioemu/config/denoiser
2026-03-30T15:42:04,995   creating build/lib/bioemu/colabfold_inline/LICENSES
2026-03-30T15:42:04,996   copying src/bioemu/colabfold_inline/LICENSES/COLABFOLD-MIT -> build/lib/bioemu/colabfold_inline/LICENSES
2026-03-30T15:42:05,013   installing to build/bdist.linux-armv7l/wheel
2026-03-30T15:42:05,014   running install
2026-03-30T15:42:05,037   running install_lib
2026-03-30T15:42:05,043   creating build/bdist.linux-armv7l/wheel
2026-03-30T15:42:05,045   creating build/bdist.linux-armv7l/wheel/_vendor
2026-03-30T15:42:05,047   creating build/bdist.linux-armv7l/wheel/_vendor/alphafold
2026-03-30T15:42:05,048   copying build/lib/_vendor/alphafold/README.md -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold
2026-03-30T15:42:05,051   creating build/bdist.linux-armv7l/wheel/_vendor/alphafold/model
2026-03-30T15:42:05,052   copying build/lib/_vendor/alphafold/model/features.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,053   copying build/lib/_vendor/alphafold/model/model.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,056   copying build/lib/_vendor/alphafold/model/utils.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,058   creating build/bdist.linux-armv7l/wheel/_vendor/alphafold/model/tf
2026-03-30T15:42:05,059   copying build/lib/_vendor/alphafold/model/tf/protein_features.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,062   copying build/lib/_vendor/alphafold/model/tf/data_transforms.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,064   copying build/lib/_vendor/alphafold/model/tf/shape_helpers.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,066   copying build/lib/_vendor/alphafold/model/tf/input_pipeline.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,068   copying build/lib/_vendor/alphafold/model/tf/shape_placeholders.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,070   copying build/lib/_vendor/alphafold/model/tf/utils.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,072   copying build/lib/_vendor/alphafold/model/tf/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,074   copying build/lib/_vendor/alphafold/model/tf/proteins_dataset.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model/tf
2026-03-30T15:42:05,076   copying build/lib/_vendor/alphafold/model/config.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,079   copying build/lib/_vendor/alphafold/model/mapping.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,082   copying build/lib/_vendor/alphafold/model/prng.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,084   copying build/lib/_vendor/alphafold/model/layer_stack.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,086   copying build/lib/_vendor/alphafold/model/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,088   copying build/lib/_vendor/alphafold/model/modules.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,091   copying build/lib/_vendor/alphafold/model/common_modules.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/model
2026-03-30T15:42:05,094   creating build/bdist.linux-armv7l/wheel/_vendor/alphafold/data
2026-03-30T15:42:05,095   copying build/lib/_vendor/alphafold/data/msa_identifiers.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/data
2026-03-30T15:42:05,097   copying build/lib/_vendor/alphafold/data/pipeline.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/data
2026-03-30T15:42:05,099   copying build/lib/_vendor/alphafold/data/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/data
2026-03-30T15:42:05,101   copying build/lib/_vendor/alphafold/data/parsers.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/data
2026-03-30T15:42:05,104   creating build/bdist.linux-armv7l/wheel/_vendor/alphafold/common
2026-03-30T15:42:05,105   copying build/lib/_vendor/alphafold/common/residue_constants.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/common
2026-03-30T15:42:05,108   copying build/lib/_vendor/alphafold/common/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold/common
2026-03-30T15:42:05,110   copying build/lib/_vendor/alphafold/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold
2026-03-30T15:42:05,112   copying build/lib/_vendor/alphafold/LICENSE -> build/bdist.linux-armv7l/wheel/./_vendor/alphafold
2026-03-30T15:42:05,115   creating build/bdist.linux-armv7l/wheel/_vendor/openfold
2026-03-30T15:42:05,116   creating build/bdist.linux-armv7l/wheel/_vendor/openfold/np
2026-03-30T15:42:05,117   copying build/lib/_vendor/openfold/np/protein.py -> build/bdist.linux-armv7l/wheel/./_vendor/openfold/np
2026-03-30T15:42:05,121   copying build/lib/_vendor/openfold/np/residue_constants.py -> build/bdist.linux-armv7l/wheel/./_vendor/openfold/np
2026-03-30T15:42:05,125   creating build/bdist.linux-armv7l/wheel/_vendor/openfold/utils
2026-03-30T15:42:05,126   copying build/lib/_vendor/openfold/utils/rigid_utils.py -> build/bdist.linux-armv7l/wheel/./_vendor/openfold/utils
2026-03-30T15:42:05,129   copying build/lib/_vendor/__init__.py -> build/bdist.linux-armv7l/wheel/./_vendor
2026-03-30T15:42:05,131   creating build/bdist.linux-armv7l/wheel/bioemu
2026-03-30T15:42:05,132   copying build/lib/bioemu/convert_chemgraph.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,135   copying build/lib/bioemu/sidechain_relax.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,137   creating build/bdist.linux-armv7l/wheel/bioemu/hpacker_setup
2026-03-30T15:42:05,138   copying build/lib/bioemu/hpacker_setup/setup_hpacker.py -> build/bdist.linux-armv7l/wheel/./bioemu/hpacker_setup
2026-03-30T15:42:05,140   copying build/lib/bioemu/hpacker_setup/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu/hpacker_setup
2026-03-30T15:42:05,142   copying build/lib/bioemu/seq_io.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,144   copying build/lib/bioemu/md_utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,146   copying build/lib/bioemu/structure_module.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,149   copying build/lib/bioemu/model_utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,151   creating build/bdist.linux-armv7l/wheel/bioemu/training
2026-03-30T15:42:05,152   copying build/lib/bioemu/training/foldedness.py -> build/bdist.linux-armv7l/wheel/./bioemu/training
2026-03-30T15:42:05,154   copying build/lib/bioemu/training/loss.py -> build/bdist.linux-armv7l/wheel/./bioemu/training
2026-03-30T15:42:05,157   copying build/lib/bioemu/denoiser.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,159   copying build/lib/bioemu/chemgraph.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,161   copying build/lib/bioemu/so3_sde.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,164   copying build/lib/bioemu/run_hpacker.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,166   creating build/bdist.linux-armv7l/wheel/bioemu/config
2026-03-30T15:42:05,168   creating build/bdist.linux-armv7l/wheel/bioemu/config/steering
2026-03-30T15:42:05,169   copying build/lib/bioemu/config/steering/physical_steering.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/steering
2026-03-30T15:42:05,172   creating build/bdist.linux-armv7l/wheel/bioemu/config/denoiser
2026-03-30T15:42:05,173   copying build/lib/bioemu/config/denoiser/dpm.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/denoiser
2026-03-30T15:42:05,175   copying build/lib/bioemu/config/denoiser/heun.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/denoiser
2026-03-30T15:42:05,177   copying build/lib/bioemu/config/denoiser/stochastic_dpm.yaml -> build/bdist.linux-armv7l/wheel/./bioemu/config/denoiser
2026-03-30T15:42:05,179   copying build/lib/bioemu/utils.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,180   copying build/lib/bioemu/shortcuts.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,182   copying build/lib/bioemu/get_embeds.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,184   copying build/lib/bioemu/sde_lib.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,186   copying build/lib/bioemu/sample.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,189   copying build/lib/bioemu/steering.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,191   copying build/lib/bioemu/models.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,194   creating build/bdist.linux-armv7l/wheel/bioemu/colabfold_inline
2026-03-30T15:42:05,195   copying build/lib/bioemu/colabfold_inline/model_runner.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline
2026-03-30T15:42:05,197   copying build/lib/bioemu/colabfold_inline/input_parsing.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline
2026-03-30T15:42:05,199   copying build/lib/bioemu/colabfold_inline/features.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline
2026-03-30T15:42:05,201   creating build/bdist.linux-armv7l/wheel/bioemu/colabfold_inline/LICENSES
2026-03-30T15:42:05,202   copying build/lib/bioemu/colabfold_inline/LICENSES/COLABFOLD-MIT -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline/LICENSES
2026-03-30T15:42:05,204   copying build/lib/bioemu/colabfold_inline/msa_client.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline
2026-03-30T15:42:05,206   copying build/lib/bioemu/colabfold_inline/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu/colabfold_inline
2026-03-30T15:42:05,208   copying build/lib/bioemu/__init__.py -> build/bdist.linux-armv7l/wheel/./bioemu
2026-03-30T15:42:05,210   running install_egg_info
2026-03-30T15:42:05,215   Copying src/bioemu.egg-info to build/bdist.linux-armv7l/wheel/./bioemu-1.3.0-py3.11.egg-info
2026-03-30T15:42:05,224   running install_scripts
2026-03-30T15:42:05,236   creating build/bdist.linux-armv7l/wheel/bioemu-1.3.0.dist-info/WHEEL
2026-03-30T15:42:05,239   creating '/tmp/pip-wheel-7kcezxsf/.tmp-5tyj61yy/bioemu-1.3.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-30T15:42:05,242   adding '_vendor/__init__.py'
2026-03-30T15:42:05,246   adding '_vendor/alphafold/LICENSE'
2026-03-30T15:42:05,247   adding '_vendor/alphafold/README.md'
2026-03-30T15:42:05,248   adding '_vendor/alphafold/__init__.py'
2026-03-30T15:42:05,251   adding '_vendor/alphafold/common/__init__.py'
2026-03-30T15:42:05,255   adding '_vendor/alphafold/common/residue_constants.py'
2026-03-30T15:42:05,257   adding '_vendor/alphafold/data/__init__.py'
2026-03-30T15:42:05,259   adding '_vendor/alphafold/data/msa_identifiers.py'
2026-03-30T15:42:05,262   adding '_vendor/alphafold/data/parsers.py'
2026-03-30T15:42:05,264   adding '_vendor/alphafold/data/pipeline.py'
2026-03-30T15:42:05,266   adding '_vendor/alphafold/model/__init__.py'
2026-03-30T15:42:05,267   adding '_vendor/alphafold/model/common_modules.py'
2026-03-30T15:42:05,270   adding '_vendor/alphafold/model/config.py'
2026-03-30T15:42:05,271   adding '_vendor/alphafold/model/features.py'
2026-03-30T15:42:05,273   adding '_vendor/alphafold/model/layer_stack.py'
2026-03-30T15:42:05,275   adding '_vendor/alphafold/model/mapping.py'
2026-03-30T15:42:05,277   adding '_vendor/alphafold/model/model.py'
2026-03-30T15:42:05,285   adding '_vendor/alphafold/model/modules.py'
2026-03-30T15:42:05,287   adding '_vendor/alphafold/model/prng.py'
2026-03-30T15:42:05,288   adding '_vendor/alphafold/model/utils.py'
2026-03-30T15:42:05,290   adding '_vendor/alphafold/model/tf/__init__.py'
2026-03-30T15:42:05,293   adding '_vendor/alphafold/model/tf/data_transforms.py'
2026-03-30T15:42:05,295   adding '_vendor/alphafold/model/tf/input_pipeline.py'
2026-03-30T15:42:05,297   adding '_vendor/alphafold/model/tf/protein_features.py'
2026-03-30T15:42:05,298   adding '_vendor/alphafold/model/tf/proteins_dataset.py'
2026-03-30T15:42:05,300   adding '_vendor/alphafold/model/tf/shape_helpers.py'
2026-03-30T15:42:05,301   adding '_vendor/alphafold/model/tf/shape_placeholders.py'
2026-03-30T15:42:05,302   adding '_vendor/alphafold/model/tf/utils.py'
2026-03-30T15:42:05,306   adding '_vendor/openfold/np/protein.py'
2026-03-30T15:42:05,310   adding '_vendor/openfold/np/residue_constants.py'
2026-03-30T15:42:05,315   adding '_vendor/openfold/utils/rigid_utils.py'
2026-03-30T15:42:05,317   adding 'bioemu/__init__.py'
2026-03-30T15:42:05,318   adding 'bioemu/chemgraph.py'
2026-03-30T15:42:05,321   adding 'bioemu/convert_chemgraph.py'
2026-03-30T15:42:05,324   adding 'bioemu/denoiser.py'
2026-03-30T15:42:05,325   adding 'bioemu/get_embeds.py'
2026-03-30T15:42:05,327   adding 'bioemu/md_utils.py'
2026-03-30T15:42:05,328   adding 'bioemu/model_utils.py'
2026-03-30T15:42:05,331   adding 'bioemu/models.py'
2026-03-30T15:42:05,332   adding 'bioemu/run_hpacker.py'
2026-03-30T15:42:05,334   adding 'bioemu/sample.py'
2026-03-30T15:42:05,336   adding 'bioemu/sde_lib.py'
2026-03-30T15:42:05,337   adding 'bioemu/seq_io.py'
2026-03-30T15:42:05,339   adding 'bioemu/shortcuts.py'
2026-03-30T15:42:05,340   adding 'bioemu/sidechain_relax.py'
2026-03-30T15:42:05,349   adding 'bioemu/so3_sde.py'
2026-03-30T15:42:05,351   adding 'bioemu/steering.py'
2026-03-30T15:42:05,353   adding 'bioemu/structure_module.py'
2026-03-30T15:42:05,355   adding 'bioemu/utils.py'
2026-03-30T15:42:05,356   adding 'bioemu/colabfold_inline/__init__.py'
2026-03-30T15:42:05,358   adding 'bioemu/colabfold_inline/features.py'
2026-03-30T15:42:05,359   adding 'bioemu/colabfold_inline/input_parsing.py'
2026-03-30T15:42:05,361   adding 'bioemu/colabfold_inline/model_runner.py'
2026-03-30T15:42:05,362   adding 'bioemu/colabfold_inline/msa_client.py'
2026-03-30T15:42:05,364   adding 'bioemu/colabfold_inline/LICENSES/COLABFOLD-MIT'
2026-03-30T15:42:05,366   adding 'bioemu/config/denoiser/dpm.yaml'
2026-03-30T15:42:05,367   adding 'bioemu/config/denoiser/heun.yaml'
2026-03-30T15:42:05,369   adding 'bioemu/config/denoiser/stochastic_dpm.yaml'
2026-03-30T15:42:05,370   adding 'bioemu/config/steering/physical_steering.yaml'
2026-03-30T15:42:05,371   adding 'bioemu/hpacker_setup/__init__.py'
2026-03-30T15:42:05,373   adding 'bioemu/hpacker_setup/setup_hpacker.py'
2026-03-30T15:42:05,375   adding 'bioemu/training/foldedness.py'
2026-03-30T15:42:05,377   adding 'bioemu/training/loss.py'
2026-03-30T15:42:05,379   adding 'bioemu-1.3.0.dist-info/licenses/LICENSE'
2026-03-30T15:42:05,382   adding 'bioemu-1.3.0.dist-info/licenses/NOTICE.md'
2026-03-30T15:42:05,384   adding 'bioemu-1.3.0.dist-info/METADATA'
2026-03-30T15:42:05,385   adding 'bioemu-1.3.0.dist-info/WHEEL'
2026-03-30T15:42:05,386   adding 'bioemu-1.3.0.dist-info/top_level.txt'
2026-03-30T15:42:05,387   adding 'bioemu-1.3.0.dist-info/RECORD'
2026-03-30T15:42:05,391   removing build/bdist.linux-armv7l/wheel
2026-03-30T15:42:05,510   Building wheel for bioemu (pyproject.toml): finished with status 'done'
2026-03-30T15:42:05,519   Created wheel for bioemu: filename=bioemu-1.3.0-py3-none-any.whl size=195642 sha256=8fd4be9e728e5330f15c395600a9196538879ab886ca0b9f4556fd1be3a26a04
2026-03-30T15:42:05,520   Stored in directory: /tmp/pip-ephem-wheel-cache-xkshj8_n/wheels/8b/02/17/0350670c76cf8f4837ec5a59b1b3ba23702525b54f6165ab66
2026-03-30T15:42:05,535 Successfully built bioemu
2026-03-30T15:42:05,545 Removed build tracker: '/tmp/pip-build-tracker-_kh50f_9'