2026-03-30T20:58:56,911 Created temporary directory: /tmp/pip-ephem-wheel-cache-nygxqlpo
2026-03-30T20:58:56,913 Created temporary directory: /tmp/pip-build-tracker-cbs4fh3e
2026-03-30T20:58:56,914 Initialized build tracking at /tmp/pip-build-tracker-cbs4fh3e
2026-03-30T20:58:56,914 Created build tracker: /tmp/pip-build-tracker-cbs4fh3e
2026-03-30T20:58:56,915 Entered build tracker: /tmp/pip-build-tracker-cbs4fh3e
2026-03-30T20:58:56,915 Created temporary directory: /tmp/pip-wheel-sn3fhvhe
2026-03-30T20:58:56,918 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-30T20:58:56,921 Created temporary directory: /tmp/pip-ephem-wheel-cache-mtw04kms
2026-03-30T20:58:56,946 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-30T20:58:56,950 2 location(s) to search for versions of crispr-chronos:
2026-03-30T20:58:56,950 * https://pypi.org/simple/crispr-chronos/
2026-03-30T20:58:56,950 * https://www.piwheels.org/simple/crispr-chronos/
2026-03-30T20:58:56,951 Fetching project page and analyzing links: https://pypi.org/simple/crispr-chronos/
2026-03-30T20:58:56,951 Getting page https://pypi.org/simple/crispr-chronos/
2026-03-30T20:58:56,953 Found index url https://pypi.org/simple
2026-03-30T20:58:57,179 Fetched page https://pypi.org/simple/crispr-chronos/ as application/vnd.pypi.simple.v1+json
2026-03-30T20:58:57,181   Skipping link: No binaries permitted for crispr-chronos: https://files.pythonhosted.org/packages/de/0d/aea70c5182ca5e2cacc6b1f84e355d3a27092e3626eb50f769400596697d/crispr_chronos-2.0.5-py3-none-any.whl (from https://pypi.org/simple/crispr-chronos/)
2026-03-30T20:58:57,181   Found link https://files.pythonhosted.org/packages/13/bc/f591e28926b4f136b3e45c87cc2c30843c46baa8fe69ba3844a31498e2de/crispr_chronos-2.0.5.tar.gz (from https://pypi.org/simple/crispr-chronos/), version: 2.0.5
2026-03-30T20:58:57,182   Skipping link: No binaries permitted for crispr-chronos: https://files.pythonhosted.org/packages/92/d0/1cc549ceeea45f827b32870fdf2bded5a3a58df0a3d71f30219cd0af0e73/crispr_chronos-2.0.6-py3-none-any.whl (from https://pypi.org/simple/crispr-chronos/)
2026-03-30T20:58:57,183   Found link https://files.pythonhosted.org/packages/85/50/c13d97429c71d375dc7da30dcb0d47a3a5f23f891cd99a0eb9b7793acad8/crispr_chronos-2.0.6.tar.gz (from https://pypi.org/simple/crispr-chronos/), version: 2.0.6
2026-03-30T20:58:57,184   Skipping link: No binaries permitted for crispr-chronos: https://files.pythonhosted.org/packages/71/ae/50d6c877b27a6a26e7eea72e5f4779401cea99cf96a26fe404d1d95f0481/crispr_chronos-2.3.11-py3-none-any.whl (from https://pypi.org/simple/crispr-chronos/)
2026-03-30T20:58:57,184   Found link https://files.pythonhosted.org/packages/bd/29/b280ef0ae78eaf68e098b6bed39888fde0ba51083d5394427c303ea2ab9c/crispr_chronos-2.3.11.tar.gz (from https://pypi.org/simple/crispr-chronos/), version: 2.3.11
2026-03-30T20:58:57,185 Fetching project page and analyzing links: https://www.piwheels.org/simple/crispr-chronos/
2026-03-30T20:58:57,186 Getting page https://www.piwheels.org/simple/crispr-chronos/
2026-03-30T20:58:57,187 Found index url https://www.piwheels.org/simple
2026-03-30T20:58:57,359 Fetched page https://www.piwheels.org/simple/crispr-chronos/ as text/html
2026-03-30T20:58:57,361   Skipping link: No binaries permitted for crispr-chronos: https://archive1.piwheels.org/simple/crispr-chronos/crispr_chronos-2.0.6-py3-none-any.whl#sha256=2b29d108d06591333a1849c56a0fdf7575f0bcefb7b128a39c18a8d8ef389d9b (from https://www.piwheels.org/simple/crispr-chronos/)
2026-03-30T20:58:57,362   Skipping link: No binaries permitted for crispr-chronos: https://archive1.piwheels.org/simple/crispr-chronos/crispr_chronos-2.0.5-py3-none-any.whl#sha256=962d56894de3ea64a505f57ec2ac3ba3e74a0fc95a513c69529b0d3459aebcce (from https://www.piwheels.org/simple/crispr-chronos/)
2026-03-30T20:58:57,363 Skipping link: not a file: https://www.piwheels.org/simple/crispr-chronos/
2026-03-30T20:58:57,363 Skipping link: not a file: https://pypi.org/simple/crispr-chronos/
2026-03-30T20:58:57,382 Given no hashes to check 1 links for project 'crispr-chronos': discarding no candidates
2026-03-30T20:58:57,400 Collecting crispr-chronos==2.3.11
2026-03-30T20:58:57,402   Created temporary directory: /tmp/pip-unpack-3a_6718b
2026-03-30T20:58:57,648   Downloading crispr_chronos-2.3.11.tar.gz (95 kB)
2026-03-30T20:58:57,766   Added crispr-chronos==2.3.11 from https://files.pythonhosted.org/packages/bd/29/b280ef0ae78eaf68e098b6bed39888fde0ba51083d5394427c303ea2ab9c/crispr_chronos-2.3.11.tar.gz to build tracker '/tmp/pip-build-tracker-cbs4fh3e'
2026-03-30T20:58:57,768   Running setup.py (path:/tmp/pip-wheel-sn3fhvhe/crispr-chronos_1dce12f8090e4c059d9edc7b7c79cdf0/setup.py) egg_info for package crispr-chronos
2026-03-30T20:58:57,769   Created temporary directory: /tmp/pip-pip-egg-info-fy3jmm7g
2026-03-30T20:58:57,769   Preparing metadata (setup.py): started
2026-03-30T20:58:57,771   Running command python setup.py egg_info
2026-03-30T20:58:58,702   running egg_info
2026-03-30T20:58:58,729   creating /tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info
2026-03-30T20:58:58,730   writing /tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/PKG-INFO
2026-03-30T20:58:58,733   writing dependency_links to /tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/dependency_links.txt
2026-03-30T20:58:58,736   writing requirements to /tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/requires.txt
2026-03-30T20:58:58,737   writing top-level names to /tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/top_level.txt
2026-03-30T20:58:58,738   writing manifest file '/tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/SOURCES.txt'
2026-03-30T20:58:58,826   reading manifest file '/tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/SOURCES.txt'
2026-03-30T20:58:58,828   adding license file 'LICENSE'
2026-03-30T20:58:58,831   writing manifest file '/tmp/pip-pip-egg-info-fy3jmm7g/crispr_chronos.egg-info/SOURCES.txt'
2026-03-30T20:58:58,938   Preparing metadata (setup.py): finished with status 'done'
2026-03-30T20:58:58,942   Source in /tmp/pip-wheel-sn3fhvhe/crispr-chronos_1dce12f8090e4c059d9edc7b7c79cdf0 has version 2.3.11, which satisfies requirement crispr-chronos==2.3.11 from https://files.pythonhosted.org/packages/bd/29/b280ef0ae78eaf68e098b6bed39888fde0ba51083d5394427c303ea2ab9c/crispr_chronos-2.3.11.tar.gz
2026-03-30T20:58:58,943   Removed crispr-chronos==2.3.11 from https://files.pythonhosted.org/packages/bd/29/b280ef0ae78eaf68e098b6bed39888fde0ba51083d5394427c303ea2ab9c/crispr_chronos-2.3.11.tar.gz from build tracker '/tmp/pip-build-tracker-cbs4fh3e'
2026-03-30T20:58:58,948 Created temporary directory: /tmp/pip-unpack-55u7v8u6
2026-03-30T20:58:58,948 Building wheels for collected packages: crispr-chronos
2026-03-30T20:58:58,952   Created temporary directory: /tmp/pip-wheel-q61w1lku
2026-03-30T20:58:58,953   Building wheel for crispr-chronos (setup.py): started
2026-03-30T20:58:58,954   Destination directory: /tmp/pip-wheel-q61w1lku
2026-03-30T20:58:58,955   Running command python setup.py bdist_wheel
2026-03-30T20:58:59,789   running bdist_wheel
2026-03-30T20:58:59,918   running build
2026-03-30T20:58:59,918   running build_py
2026-03-30T20:58:59,952   creating build/lib/chronos
2026-03-30T20:58:59,954   copying chronos/figshare.py -> build/lib/chronos
2026-03-30T20:58:59,957   copying chronos/__init__.py -> build/lib/chronos
2026-03-30T20:58:59,959   copying chronos/plotting.py -> build/lib/chronos
2026-03-30T20:58:59,961   copying chronos/fetch_parameters.py -> build/lib/chronos
2026-03-30T20:58:59,963   copying chronos/reports.py -> build/lib/chronos
2026-03-30T20:58:59,966   copying chronos/hit_calling.py -> build/lib/chronos
2026-03-30T20:58:59,969   copying chronos/evaluations.py -> build/lib/chronos
2026-03-30T20:58:59,972   copying chronos/model.py -> build/lib/chronos
2026-03-30T20:58:59,977   copying chronos/copy_correction.py -> build/lib/chronos
2026-03-30T20:59:00,009   /usr/local/lib/python3.11/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated.
2026-03-30T20:59:00,009   !!

2026-03-30T20:59:00,010           ********************************************************************************
2026-03-30T20:59:00,011           Please avoid running ``setup.py`` directly.
2026-03-30T20:59:00,011           Instead, use pypa/build, pypa/installer or other
2026-03-30T20:59:00,011           standards-based tools.

2026-03-30T20:59:00,012           This deprecation is overdue, please update your project and remove deprecated
2026-03-30T20:59:00,013           calls to avoid build errors in the future.

2026-03-30T20:59:00,014           See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
2026-03-30T20:59:00,014           ********************************************************************************

2026-03-30T20:59:00,015   !!
2026-03-30T20:59:00,015     self.initialize_options()
2026-03-30T20:59:00,038   installing to build/bdist.linux-armv7l/wheel
2026-03-30T20:59:00,038   running install
2026-03-30T20:59:00,063   running install_lib
2026-03-30T20:59:00,090   creating build/bdist.linux-armv7l/wheel
2026-03-30T20:59:00,092   creating build/bdist.linux-armv7l/wheel/chronos
2026-03-30T20:59:00,094   copying build/lib/chronos/figshare.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,096   copying build/lib/chronos/__init__.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,098   copying build/lib/chronos/plotting.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,101   copying build/lib/chronos/fetch_parameters.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,102   copying build/lib/chronos/reports.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,105   copying build/lib/chronos/hit_calling.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,109   copying build/lib/chronos/evaluations.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,112   copying build/lib/chronos/model.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,116   copying build/lib/chronos/copy_correction.py -> build/bdist.linux-armv7l/wheel/./chronos
2026-03-30T20:59:00,119   running install_egg_info
2026-03-30T20:59:00,154   running egg_info
2026-03-30T20:59:00,182   writing crispr_chronos.egg-info/PKG-INFO
2026-03-30T20:59:00,186   writing dependency_links to crispr_chronos.egg-info/dependency_links.txt
2026-03-30T20:59:00,188   writing requirements to crispr_chronos.egg-info/requires.txt
2026-03-30T20:59:00,190   writing top-level names to crispr_chronos.egg-info/top_level.txt
2026-03-30T20:59:00,221   reading manifest file 'crispr_chronos.egg-info/SOURCES.txt'
2026-03-30T20:59:00,224   adding license file 'LICENSE'
2026-03-30T20:59:00,227   writing manifest file 'crispr_chronos.egg-info/SOURCES.txt'
2026-03-30T20:59:00,229   Copying crispr_chronos.egg-info to build/bdist.linux-armv7l/wheel/./crispr_chronos-2.3.11-py3.11.egg-info
2026-03-30T20:59:00,240   running install_scripts
2026-03-30T20:59:00,252   creating build/bdist.linux-armv7l/wheel/crispr_chronos-2.3.11.dist-info/WHEEL
2026-03-30T20:59:00,255   creating '/tmp/pip-wheel-q61w1lku/crispr_chronos-2.3.11-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-30T20:59:00,258   adding 'chronos/__init__.py'
2026-03-30T20:59:00,260   adding 'chronos/copy_correction.py'
2026-03-30T20:59:00,267   adding 'chronos/evaluations.py'
2026-03-30T20:59:00,269   adding 'chronos/fetch_parameters.py'
2026-03-30T20:59:00,272   adding 'chronos/figshare.py'
2026-03-30T20:59:00,280   adding 'chronos/hit_calling.py'
2026-03-30T20:59:00,299   adding 'chronos/model.py'
2026-03-30T20:59:00,303   adding 'chronos/plotting.py'
2026-03-30T20:59:00,308   adding 'chronos/reports.py'
2026-03-30T20:59:00,311   adding 'crispr_chronos-2.3.11.dist-info/licenses/LICENSE'
2026-03-30T20:59:00,313   adding 'crispr_chronos-2.3.11.dist-info/METADATA'
2026-03-30T20:59:00,314   adding 'crispr_chronos-2.3.11.dist-info/WHEEL'
2026-03-30T20:59:00,315   adding 'crispr_chronos-2.3.11.dist-info/top_level.txt'
2026-03-30T20:59:00,316   adding 'crispr_chronos-2.3.11.dist-info/RECORD'
2026-03-30T20:59:00,319   removing build/bdist.linux-armv7l/wheel
2026-03-30T20:59:00,432   Building wheel for crispr-chronos (setup.py): finished with status 'done'
2026-03-30T20:59:00,435   Created wheel for crispr-chronos: filename=crispr_chronos-2.3.11-py3-none-any.whl size=92250 sha256=f61c43a6a63d1d3cfcef89b3c33c992531b629a5fccf7be523d7249588193e00
2026-03-30T20:59:00,437   Stored in directory: /tmp/pip-ephem-wheel-cache-mtw04kms/wheels/7e/18/85/fc3532658439b9dda22aa47e5fc9efa564152b0d9035f569c0
2026-03-30T20:59:00,446 Successfully built crispr-chronos
2026-03-30T20:59:00,453 Removed build tracker: '/tmp/pip-build-tracker-cbs4fh3e'