2026-03-31T17:10:20,852 Created temporary directory: /tmp/pip-ephem-wheel-cache-vvryiol3
2026-03-31T17:10:20,853 Created temporary directory: /tmp/pip-build-tracker-d5adddcy
2026-03-31T17:10:20,854 Initialized build tracking at /tmp/pip-build-tracker-d5adddcy
2026-03-31T17:10:20,854 Created build tracker: /tmp/pip-build-tracker-d5adddcy
2026-03-31T17:10:20,855 Entered build tracker: /tmp/pip-build-tracker-d5adddcy
2026-03-31T17:10:20,856 Created temporary directory: /tmp/pip-wheel-k9q7edq6
2026-03-31T17:10:20,858 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-31T17:10:20,861 Created temporary directory: /tmp/pip-ephem-wheel-cache-sgy74k1a
2026-03-31T17:10:20,882 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-31T17:10:20,885 2 location(s) to search for versions of gffutils:
2026-03-31T17:10:20,885 * https://pypi.org/simple/gffutils/
2026-03-31T17:10:20,885 * https://www.piwheels.org/simple/gffutils/
2026-03-31T17:10:20,886 Fetching project page and analyzing links: https://pypi.org/simple/gffutils/
2026-03-31T17:10:20,887 Getting page https://pypi.org/simple/gffutils/
2026-03-31T17:10:20,888 Found index url https://pypi.org/simple
2026-03-31T17:10:21,136 Fetched page https://pypi.org/simple/gffutils/ as application/vnd.pypi.simple.v1+json
2026-03-31T17:10:21,141   Found link https://files.pythonhosted.org/packages/d9/a5/3d6f46b049c1091efcc6f6d29e9d39470f5f8d62e17cdb6fd331526fd71b/gffutils-0.0.0.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.0.0
2026-03-31T17:10:21,142   Found link https://files.pythonhosted.org/packages/86/64/6dab23af4bfb4052c66a8f1f174c95d59f8e797220bfe19dfd11122538d9/gffutils-0.7.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.7
2026-03-31T17:10:21,142   Found link https://files.pythonhosted.org/packages/f9/6a/b2cf512d0772c220431fbab8465abdb2d730bd6ac22a6816e023afa675b8/gffutils-0.8.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8
2026-03-31T17:10:21,143   Found link https://files.pythonhosted.org/packages/07/52/5d10ce38562ed0b8468697e09f8898b45df543d5e9fe5b6c5a4a5aca6685/gffutils-0.8.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.1
2026-03-31T17:10:21,144   Found link https://files.pythonhosted.org/packages/eb/89/e2e0c90b9be07b3ab650b7474971fbf0b1e5d4d29a2b03c676ffad9501bb/gffutils-0.8.2.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.2
2026-03-31T17:10:21,145   Found link https://files.pythonhosted.org/packages/3e/2b/1a5d72b043c024b86d573ceab15b464acd0638b912cd30ddce71e7d93112/gffutils-0.8.3.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.3
2026-03-31T17:10:21,145   Found link https://files.pythonhosted.org/packages/8d/00/6f4f59d109bbc421ad59faf64eb31cb90858a4a316c31eb49e09467f4a93/gffutils-0.8.3.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.3.1
2026-03-31T17:10:21,146   Found link https://files.pythonhosted.org/packages/d8/a3/487db49cf8b35dd17d6360f464d3524b369365e5bd7964ac32b33a6fabab/gffutils-0.8.4rc1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.4rc1
2026-03-31T17:10:21,147   Found link https://files.pythonhosted.org/packages/25/9d/97c58a9a602e41e2797747fd94b6bd4aa82331178a074c4da966030045ba/gffutils-0.8.5.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.5
2026-03-31T17:10:21,147   Found link https://files.pythonhosted.org/packages/21/b1/0ecce3b0304048241da7e830196aa50d62dfe9c9bdbf4fb48aebbf1d363e/gffutils-0.8.6.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.6
2026-03-31T17:10:21,148   Found link https://files.pythonhosted.org/packages/40/bc/85541d291c6da6570deed2988206bb322afb8d5ede1e72fd267c440a286d/gffutils-0.8.6.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.6.1
2026-03-31T17:10:21,149   Found link https://files.pythonhosted.org/packages/d8/bf/b630f9a006d7380d79b344b41af548c73371844737f221a9d4a59d57f91e/gffutils-0.8.7.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.7
2026-03-31T17:10:21,150   Found link https://files.pythonhosted.org/packages/a7/fa/3d8cd13f58540098f5efb3ec7dd33d1bb6a27ee06e377e1d6a2419b4be25/gffutils-0.8.7.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.8.7.1
2026-03-31T17:10:21,150   Found link https://files.pythonhosted.org/packages/b4/ea/54ca403a8d471849606fb432b9afcf73c8c5105ea2dd87b8d38bd5217c5a/gffutils-0.9.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.9
2026-03-31T17:10:21,151   Found link https://files.pythonhosted.org/packages/f0/cb/bbbde7e179aa5efe13f51afbef13a85a53632d94fc97755a2819d4d251c6/gffutils-0.10.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.10
2026-03-31T17:10:21,151   Found link https://files.pythonhosted.org/packages/87/d6/f893f14fd6cf1c9e758259f6e0f9ba1ae03370988d8f1a3ea8d790ca5b06/gffutils-0.10.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.10.1
2026-03-31T17:10:21,152   Found link https://files.pythonhosted.org/packages/eb/38/8f8f917d37175dea194c12d7c625d82e0b039169afe5c08f3609fbef5f9c/gffutils-0.11.0.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.11.0
2026-03-31T17:10:21,152   Found link https://files.pythonhosted.org/packages/41/5e/e55e6b0e13467b73680ee8206082294366e0bf194726ee6923517886145a/gffutils-0.11.1.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.11.1
2026-03-31T17:10:21,153   Skipping link: No binaries permitted for gffutils: https://files.pythonhosted.org/packages/b2/0a/eddd2f6667198100adb8fa6f983db66022e3c375c40d19795a3de05df986/gffutils-0.12-py3-none-any.whl (from https://pypi.org/simple/gffutils/)
2026-03-31T17:10:21,153   Found link https://files.pythonhosted.org/packages/94/8a/692d9022dc2edbfd3aa3d1b82924d7743c62dcfda2b800d4caf948fdc78c/gffutils-0.12.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.12
2026-03-31T17:10:21,154   Skipping link: No binaries permitted for gffutils: https://files.pythonhosted.org/packages/38/d0/4f34f9889ed159db2bcd70014dfe08fcad9d34db528a19a73754790cc21f/gffutils-0.13-py3-none-any.whl (from https://pypi.org/simple/gffutils/)
2026-03-31T17:10:21,155   Found link https://files.pythonhosted.org/packages/66/51/998a14434a597162006385575373c6be06cc4c52caa67d0be901a82ee761/gffutils-0.13.tar.gz (from https://pypi.org/simple/gffutils/), version: 0.13
2026-03-31T17:10:21,156   Skipping link: No binaries permitted for gffutils: https://files.pythonhosted.org/packages/b9/d7/be7554d75f012ad88cbfcad1ffd1af195ba9d4e704d302af40b401c67832/gffutils-0.14-py3-none-any.whl (from https://pypi.org/simple/gffutils/) (requires-python:>=3.8)
2026-03-31T17:10:21,157   Found link https://files.pythonhosted.org/packages/a4/ff/cd2f1b18f50438d4850aa3724e96321660044bd98fb5a466f17b84ad80dc/gffutils-0.14.tar.gz (from https://pypi.org/simple/gffutils/) (requires-python:>=3.8), version: 0.14
2026-03-31T17:10:21,158 Fetching project page and analyzing links: https://www.piwheels.org/simple/gffutils/
2026-03-31T17:10:21,158 Getting page https://www.piwheels.org/simple/gffutils/
2026-03-31T17:10:21,160 Found index url https://www.piwheels.org/simple
2026-03-31T17:10:21,345 Fetched page https://www.piwheels.org/simple/gffutils/ as text/html
2026-03-31T17:10:21,351   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.13-py3-none-any.whl#sha256=7538124114af4d314f4928ba2b6fe9ecf7d2ec159fb9db9d1032d43bdd0f0c25 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,351   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.12-py3-none-any.whl#sha256=50cd991eb06617b36786baf3a81e83df18eeb7155224754c85d85f53b88b7119 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,352   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.11.1-py3-none-any.whl#sha256=4cc48c421d677ade7419a12cf3d970d2d3be2891fa35fa5b3a54c5f97dbb037d (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,353   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.11.0-py3-none-any.whl#sha256=17cb6c18791ad6fac6a243fdacad9c551cd32d03d07717e740048b9e3c04d901 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,353   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.10.1-py3-none-any.whl#sha256=5ef49126fc2ce3888acab72b8de390a1851ee39c7e97c44e04a3bd67c2d785cb (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,354   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.10-py3-none-any.whl#sha256=a0a5c59b160c35349aa71feadf2a5bd0f82acf3372cc5f137077c3d94babb938 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,354   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.9-py3-none-any.whl#sha256=467fd84f30d0f2fca1ef1197c9794c050ca041b3c89fc2f717ff1b775ee263c7 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,355   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.7.1-py3-none-any.whl#sha256=9373da862b66f89436246505d76107af3bdbbbe208bd387558c982cab9bb7a44 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,355   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.7-py3-none-any.whl#sha256=4bee88653f846fd491426bc5b4474b346233c8224cf084be5e088b80a3e20864 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,356   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.6.1-py3-none-any.whl#sha256=8dfce15146e0d0ae1ee7353676caa181d8728b9b2b6c53f9738ff539ba96e12e (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,356   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.6-py3-none-any.whl#sha256=fb0b3a2418537eacfd289c93c9e1f97e0179a43d1fefdcb26fa7074a236665f9 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,357   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.5-py3-none-any.whl#sha256=efae4ef85e8f8d071bf4cdec1447ce2fac13c6453594d39c29aa351f90af43ab (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,358   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.4rc1-py3-none-any.whl#sha256=f5b02338e4b604e57f22582da42962d0e7d27f792e591c306530d116d2c1b7a4 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,358   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.3.1-py3-none-any.whl#sha256=f9c7e10bac2007279e1fc859269bf697895138b08cd273a688044d6cc8d9e428 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,359   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.3-py3-none-any.whl#sha256=1ceff7023c903f5e86de91e0c4ec4680ef3e7bef5547c96af0636f144f435c3d (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,359   Skipping link: No binaries permitted for gffutils: https://archive1.piwheels.org/simple/gffutils/gffutils-0.8.2-py3-none-any.whl#sha256=948a8856b9496f8a82cfa9fd9210b9ce6956396536fc506a67f84586faf94ce9 (from https://www.piwheels.org/simple/gffutils/)
2026-03-31T17:10:21,360 Skipping link: not a file: https://www.piwheels.org/simple/gffutils/
2026-03-31T17:10:21,361 Skipping link: not a file: https://pypi.org/simple/gffutils/
2026-03-31T17:10:21,382 Given no hashes to check 1 links for project 'gffutils': discarding no candidates
2026-03-31T17:10:21,400 Collecting gffutils==0.14
2026-03-31T17:10:21,402   Created temporary directory: /tmp/pip-unpack-jb22u3dw
2026-03-31T17:10:21,646   Downloading gffutils-0.14.tar.gz (1.6 MB)
2026-03-31T17:10:22,363   Added gffutils==0.14 from https://files.pythonhosted.org/packages/a4/ff/cd2f1b18f50438d4850aa3724e96321660044bd98fb5a466f17b84ad80dc/gffutils-0.14.tar.gz to build tracker '/tmp/pip-build-tracker-d5adddcy'
2026-03-31T17:10:22,368   Created temporary directory: /tmp/pip-build-env-q3175nnk
2026-03-31T17:10:22,373   Installing build dependencies: started
2026-03-31T17:10:22,374   Running command pip subprocess to install build dependencies
2026-03-31T17:10:23,501   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-03-31T17:10:23,929   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-03-31T17:10:23,951   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-03-31T17:10:25,681   Collecting setuptools>=77.0.3
2026-03-31T17:10:25,763     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-03-31T17:10:28,730   Installing collected packages: setuptools
2026-03-31T17:10:31,745   Successfully installed setuptools-82.0.1
2026-03-31T17:10:32,010   Installing build dependencies: finished with status 'done'
2026-03-31T17:10:32,016   Getting requirements to build wheel: started
2026-03-31T17:10:32,017   Running command Getting requirements to build wheel
2026-03-31T17:10:32,698   running egg_info
2026-03-31T17:10:32,704   writing gffutils.egg-info/PKG-INFO
2026-03-31T17:10:32,709   writing dependency_links to gffutils.egg-info/dependency_links.txt
2026-03-31T17:10:32,712   writing requirements to gffutils.egg-info/requires.txt
2026-03-31T17:10:32,713   writing top-level names to gffutils.egg-info/top_level.txt
2026-03-31T17:10:32,745   reading manifest file 'gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:32,751   reading manifest template 'MANIFEST.in'
2026-03-31T17:10:32,754   warning: no files found matching 'gffutils/test/data/__init__.py'
2026-03-31T17:10:32,756   warning: no files found matching 'gffutils/test/data/t.py'
2026-03-31T17:10:32,756   adding license file 'LICENSE'
2026-03-31T17:10:32,762   writing manifest file 'gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:32,858   Getting requirements to build wheel: finished with status 'done'
2026-03-31T17:10:32,862   Created temporary directory: /tmp/pip-modern-metadata-uevd5nkp
2026-03-31T17:10:32,864   Preparing metadata (pyproject.toml): started
2026-03-31T17:10:32,865   Running command Preparing metadata (pyproject.toml)
2026-03-31T17:10:33,517   running dist_info
2026-03-31T17:10:33,527   creating /tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info
2026-03-31T17:10:33,528   writing /tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/PKG-INFO
2026-03-31T17:10:33,533   writing dependency_links to /tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/dependency_links.txt
2026-03-31T17:10:33,536   writing requirements to /tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/requires.txt
2026-03-31T17:10:33,537   writing top-level names to /tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/top_level.txt
2026-03-31T17:10:33,538   writing manifest file '/tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:33,568   reading manifest file '/tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:33,570   reading manifest template 'MANIFEST.in'
2026-03-31T17:10:33,573   warning: no files found matching 'gffutils/test/data/__init__.py'
2026-03-31T17:10:33,574   warning: no files found matching 'gffutils/test/data/t.py'
2026-03-31T17:10:33,574   adding license file 'LICENSE'
2026-03-31T17:10:33,579   writing manifest file '/tmp/pip-modern-metadata-uevd5nkp/gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:33,580   creating '/tmp/pip-modern-metadata-uevd5nkp/gffutils-0.14.dist-info'
2026-03-31T17:10:33,704   Preparing metadata (pyproject.toml): finished with status 'done'
2026-03-31T17:10:33,708   Source in /tmp/pip-wheel-k9q7edq6/gffutils_8f67b73395d942198f1ad6a2742722a7 has version 0.14, which satisfies requirement gffutils==0.14 from https://files.pythonhosted.org/packages/a4/ff/cd2f1b18f50438d4850aa3724e96321660044bd98fb5a466f17b84ad80dc/gffutils-0.14.tar.gz
2026-03-31T17:10:33,709   Removed gffutils==0.14 from https://files.pythonhosted.org/packages/a4/ff/cd2f1b18f50438d4850aa3724e96321660044bd98fb5a466f17b84ad80dc/gffutils-0.14.tar.gz from build tracker '/tmp/pip-build-tracker-d5adddcy'
2026-03-31T17:10:33,714 Created temporary directory: /tmp/pip-unpack-47axjpvo
2026-03-31T17:10:33,715 Building wheels for collected packages: gffutils
2026-03-31T17:10:33,719   Created temporary directory: /tmp/pip-wheel-l450usvo
2026-03-31T17:10:33,720   Destination directory: /tmp/pip-wheel-l450usvo
2026-03-31T17:10:33,722   Building wheel for gffutils (pyproject.toml): started
2026-03-31T17:10:33,723   Running command Building wheel for gffutils (pyproject.toml)
2026-03-31T17:10:34,362   running bdist_wheel
2026-03-31T17:10:34,379   running build
2026-03-31T17:10:34,380   running build_py
2026-03-31T17:10:34,386   creating build/lib/gffutils
2026-03-31T17:10:34,388   copying gffutils/helpers.py -> build/lib/gffutils
2026-03-31T17:10:34,391   copying gffutils/inspect.py -> build/lib/gffutils
2026-03-31T17:10:34,395   copying gffutils/create.py -> build/lib/gffutils
2026-03-31T17:10:34,403   copying gffutils/pybedtools_integration.py -> build/lib/gffutils
2026-03-31T17:10:34,412   copying gffutils/constants.py -> build/lib/gffutils
2026-03-31T17:10:34,420   copying gffutils/parser.py -> build/lib/gffutils
2026-03-31T17:10:34,431   copying gffutils/gffwriter.py -> build/lib/gffutils
2026-03-31T17:10:34,441   copying gffutils/__init__.py -> build/lib/gffutils
2026-03-31T17:10:34,443   copying gffutils/merge_criteria.py -> build/lib/gffutils
2026-03-31T17:10:34,444   copying gffutils/attributes.py -> build/lib/gffutils
2026-03-31T17:10:34,446   copying gffutils/feature.py -> build/lib/gffutils
2026-03-31T17:10:34,449   copying gffutils/exceptions.py -> build/lib/gffutils
2026-03-31T17:10:34,450   copying gffutils/convert.py -> build/lib/gffutils
2026-03-31T17:10:34,452   copying gffutils/version.py -> build/lib/gffutils
2026-03-31T17:10:34,454   copying gffutils/interface.py -> build/lib/gffutils
2026-03-31T17:10:34,457   copying gffutils/biopython_integration.py -> build/lib/gffutils
2026-03-31T17:10:34,459   copying gffutils/bins.py -> build/lib/gffutils
2026-03-31T17:10:34,462   copying gffutils/iterators.py -> build/lib/gffutils
2026-03-31T17:10:34,465   creating build/lib/gffutils/test
2026-03-31T17:10:34,467   copying gffutils/test/expected.py -> build/lib/gffutils/test
2026-03-31T17:10:34,469   copying gffutils/test/synth_test_base.py -> build/lib/gffutils/test
2026-03-31T17:10:34,471   copying gffutils/test/feature_test.py -> build/lib/gffutils/test
2026-03-31T17:10:34,473   copying gffutils/test/test_cli.py -> build/lib/gffutils/test
2026-03-31T17:10:34,475   copying gffutils/test/helpers_test.py -> build/lib/gffutils/test
2026-03-31T17:10:34,477   copying gffutils/test/test_1.py -> build/lib/gffutils/test
2026-03-31T17:10:34,479   copying gffutils/test/test_iterators.py -> build/lib/gffutils/test
2026-03-31T17:10:34,481   copying gffutils/test/__init__.py -> build/lib/gffutils/test
2026-03-31T17:10:34,483   copying gffutils/test/parser_test.py -> build/lib/gffutils/test
2026-03-31T17:10:34,485   copying gffutils/test/conftest.py -> build/lib/gffutils/test
2026-03-31T17:10:34,487   copying gffutils/test/test_issues.py -> build/lib/gffutils/test
2026-03-31T17:10:34,490   copying gffutils/test/attr_test_cases.py -> build/lib/gffutils/test
2026-03-31T17:10:34,492   copying gffutils/test/performance_evaluation.py -> build/lib/gffutils/test
2026-03-31T17:10:34,495   copying gffutils/test/test_biopython_integration.py -> build/lib/gffutils/test
2026-03-31T17:10:34,497   copying gffutils/test/test_merge.py -> build/lib/gffutils/test
2026-03-31T17:10:34,499   copying gffutils/test/test_merge_all.py -> build/lib/gffutils/test
2026-03-31T17:10:34,501   creating build/lib/gffutils/scripts
2026-03-31T17:10:34,502   copying gffutils/scripts/gffutils-flybase-convert.py -> build/lib/gffutils/scripts
2026-03-31T17:10:34,506   creating build/lib/gffutils/contrib
2026-03-31T17:10:34,507   copying gffutils/contrib/plotting.py -> build/lib/gffutils/contrib
2026-03-31T17:10:34,510   copying gffutils/contrib/__init__.py -> build/lib/gffutils/contrib
2026-03-31T17:10:34,512   running egg_info
2026-03-31T17:10:34,528   writing gffutils.egg-info/PKG-INFO
2026-03-31T17:10:34,535   writing dependency_links to gffutils.egg-info/dependency_links.txt
2026-03-31T17:10:34,538   writing requirements to gffutils.egg-info/requires.txt
2026-03-31T17:10:34,541   writing top-level names to gffutils.egg-info/top_level.txt
2026-03-31T17:10:34,560   reading manifest file 'gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:34,566   reading manifest template 'MANIFEST.in'
2026-03-31T17:10:34,569   warning: no files found matching 'gffutils/test/data/__init__.py'
2026-03-31T17:10:34,571   warning: no files found matching 'gffutils/test/data/t.py'
2026-03-31T17:10:34,572   adding license file 'LICENSE'
2026-03-31T17:10:34,578   writing manifest file 'gffutils.egg-info/SOURCES.txt'
2026-03-31T17:10:34,590   creating build/lib/gffutils/test/data
2026-03-31T17:10:34,591   copying gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,593   copying gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,598   copying gffutils/test/data/FBgn0031208.gtf -> build/lib/gffutils/test/data
2026-03-31T17:10:34,600   copying gffutils/test/data/random-chr.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,603   copying gffutils/test/data/gencode-v19.gtf -> build/lib/gffutils/test/data
2026-03-31T17:10:34,606   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,608   copying gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/lib/gffutils/test/data
2026-03-31T17:10:34,610   copying gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,613   copying gffutils/test/data/sharr.gtf -> build/lib/gffutils/test/data
2026-03-31T17:10:34,615   copying gffutils/test/data/nonascii -> build/lib/gffutils/test/data
2026-03-31T17:10:34,617   copying gffutils/test/data/issue167.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,619   copying gffutils/test/data/dm6-chr2L.fa -> build/lib/gffutils/test/data
2026-03-31T17:10:34,621   copying gffutils/test/data/ncbi_gff3.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,624   copying gffutils/test/data/dm6-chr2L.fa.fai -> build/lib/gffutils/test/data
2026-03-31T17:10:34,626   copying gffutils/test/data/mouse_extra_comma.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,628   copying gffutils/test/data/wormbase_gff2_alt.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,630   copying gffutils/test/data/issue174.gtf -> build/lib/gffutils/test/data
2026-03-31T17:10:34,633   copying gffutils/test/data/keyval_sep_in_attrs.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,635   copying gffutils/test/data/gms2_example.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,637   copying gffutils/test/data/glimmer_nokeyval.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,639   copying gffutils/test/data/keep-order-test.gtf -> build/lib/gffutils/test/data
2026-03-31T17:10:34,641   copying gffutils/test/data/gff_example1.gff3.gz -> build/lib/gffutils/test/data
2026-03-31T17:10:34,643   copying gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,647   copying gffutils/test/data/issue_197.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,649   copying gffutils/test/data/unsanitized.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,651   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,655   copying gffutils/test/data/FBgn0031208.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,657   copying gffutils/test/data/intro_docs_example.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,660   copying gffutils/test/data/ensembl_gtf.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,663   copying gffutils/test/data/gff_example1.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,665   copying gffutils/test/data/F3-unique-3.v2.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,668   copying gffutils/test/data/wormbase_gff2.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,671   copying gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/lib/gffutils/test/data
2026-03-31T17:10:34,817   copying gffutils/test/data/gencode.vM8.chromsizes.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,819   copying gffutils/test/data/FBgn0031208.gtf.db -> build/lib/gffutils/test/data
2026-03-31T17:10:34,823   copying gffutils/test/data/download-large-annotation-files.sh -> build/lib/gffutils/test/data
2026-03-31T17:10:34,826   copying gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,829   copying gffutils/test/data/synthetic.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,832   copying gffutils/test/data/jgi_gff2.txt -> build/lib/gffutils/test/data
2026-03-31T17:10:34,834   copying gffutils/test/data/hybrid1.gff3 -> build/lib/gffutils/test/data
2026-03-31T17:10:34,836   copying gffutils/scripts/gffutils-cli -> build/lib/gffutils/scripts
2026-03-31T17:10:34,856   running build_scripts
2026-03-31T17:10:34,857   creating build/scripts-3.11
2026-03-31T17:10:34,859   copying and adjusting gffutils/scripts/gffutils-cli -> build/scripts-3.11
2026-03-31T17:10:34,861   changing mode of build/scripts-3.11/gffutils-cli from 644 to 755
2026-03-31T17:10:34,871   installing to build/bdist.linux-armv7l/wheel
2026-03-31T17:10:34,871   running install
2026-03-31T17:10:34,895   running install_lib
2026-03-31T17:10:34,901   creating build/bdist.linux-armv7l/wheel
2026-03-31T17:10:34,903   creating build/bdist.linux-armv7l/wheel/gffutils
2026-03-31T17:10:34,905   copying build/lib/gffutils/helpers.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:34,908   copying build/lib/gffutils/inspect.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:34,911   creating build/bdist.linux-armv7l/wheel/gffutils/test
2026-03-31T17:10:34,912   copying build/lib/gffutils/test/expected.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,915   copying build/lib/gffutils/test/synth_test_base.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,917   copying build/lib/gffutils/test/feature_test.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,920   copying build/lib/gffutils/test/test_cli.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,922   copying build/lib/gffutils/test/helpers_test.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,925   copying build/lib/gffutils/test/test_1.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,929   copying build/lib/gffutils/test/test_iterators.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,931   copying build/lib/gffutils/test/__init__.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,933   copying build/lib/gffutils/test/parser_test.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,936   copying build/lib/gffutils/test/conftest.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:34,939   creating build/bdist.linux-armv7l/wheel/gffutils/test/data
2026-03-31T17:10:34,940   copying build/lib/gffutils/test/data/c_elegans_WS199_ann_gff.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,943   copying build/lib/gffutils/test/data/gencode.vM8.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,948   copying build/lib/gffutils/test/data/FBgn0031208.gtf -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,950   copying build/lib/gffutils/test/data/random-chr.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,952   copying build/lib/gffutils/test/data/gencode-v19.gtf -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,955   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,957   copying build/lib/gffutils/test/data/c_elegans_WS199_dna_shortened.fa -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,959   copying build/lib/gffutils/test/data/c_elegans_WS199_shortened_gff.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,962   copying build/lib/gffutils/test/data/sharr.gtf -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,964   copying build/lib/gffutils/test/data/nonascii -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,966   copying build/lib/gffutils/test/data/issue167.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,968   copying build/lib/gffutils/test/data/dm6-chr2L.fa -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,971   copying build/lib/gffutils/test/data/ncbi_gff3.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,973   copying build/lib/gffutils/test/data/dm6-chr2L.fa.fai -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,975   copying build/lib/gffutils/test/data/mouse_extra_comma.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,977   copying build/lib/gffutils/test/data/wormbase_gff2_alt.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,980   copying build/lib/gffutils/test/data/issue174.gtf -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,982   copying build/lib/gffutils/test/data/keyval_sep_in_attrs.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,984   copying build/lib/gffutils/test/data/gms2_example.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,986   copying build/lib/gffutils/test/data/glimmer_nokeyval.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,988   copying build/lib/gffutils/test/data/keep-order-test.gtf -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,990   copying build/lib/gffutils/test/data/gff_example1.gff3.gz -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,993   copying build/lib/gffutils/test/data/gencode.vM8.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,997   copying build/lib/gffutils/test/data/issue_197.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:34,999   copying build/lib/gffutils/test/data/unsanitized.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,001   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,006   copying build/lib/gffutils/test/data/FBgn0031208.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,009   copying build/lib/gffutils/test/data/intro_docs_example.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,011   copying build/lib/gffutils/test/data/ensembl_gtf.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,013   copying build/lib/gffutils/test/data/gff_example1.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,016   copying build/lib/gffutils/test/data/F3-unique-3.v2.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,019   copying build/lib/gffutils/test/data/wormbase_gff2.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,021   copying build/lib/gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,182   copying build/lib/gffutils/test/data/gencode.vM8.chromsizes.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,184   copying build/lib/gffutils/test/data/FBgn0031208.gtf.db -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,187   copying build/lib/gffutils/test/data/download-large-annotation-files.sh -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,189   copying build/lib/gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,192   copying build/lib/gffutils/test/data/synthetic.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,194   copying build/lib/gffutils/test/data/jgi_gff2.txt -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,195   copying build/lib/gffutils/test/data/hybrid1.gff3 -> build/bdist.linux-armv7l/wheel/./gffutils/test/data
2026-03-31T17:10:35,197   copying build/lib/gffutils/test/test_issues.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,199   copying build/lib/gffutils/test/attr_test_cases.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,202   copying build/lib/gffutils/test/performance_evaluation.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,204   copying build/lib/gffutils/test/test_biopython_integration.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,205   copying build/lib/gffutils/test/test_merge.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,208   copying build/lib/gffutils/test/test_merge_all.py -> build/bdist.linux-armv7l/wheel/./gffutils/test
2026-03-31T17:10:35,210   copying build/lib/gffutils/create.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,213   copying build/lib/gffutils/pybedtools_integration.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,215   copying build/lib/gffutils/constants.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,217   copying build/lib/gffutils/parser.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,221   creating build/bdist.linux-armv7l/wheel/gffutils/scripts
2026-03-31T17:10:35,222   copying build/lib/gffutils/scripts/gffutils-flybase-convert.py -> build/bdist.linux-armv7l/wheel/./gffutils/scripts
2026-03-31T17:10:35,224   copying build/lib/gffutils/scripts/gffutils-cli -> build/bdist.linux-armv7l/wheel/./gffutils/scripts
2026-03-31T17:10:35,227   creating build/bdist.linux-armv7l/wheel/gffutils/contrib
2026-03-31T17:10:35,229   copying build/lib/gffutils/contrib/plotting.py -> build/bdist.linux-armv7l/wheel/./gffutils/contrib
2026-03-31T17:10:35,231   copying build/lib/gffutils/contrib/__init__.py -> build/bdist.linux-armv7l/wheel/./gffutils/contrib
2026-03-31T17:10:35,232   copying build/lib/gffutils/gffwriter.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,235   copying build/lib/gffutils/__init__.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,237   copying build/lib/gffutils/merge_criteria.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,238   copying build/lib/gffutils/attributes.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,240   copying build/lib/gffutils/feature.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,243   copying build/lib/gffutils/exceptions.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,245   copying build/lib/gffutils/convert.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,247   copying build/lib/gffutils/version.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,249   copying build/lib/gffutils/interface.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,252   copying build/lib/gffutils/biopython_integration.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,254   copying build/lib/gffutils/bins.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,256   copying build/lib/gffutils/iterators.py -> build/bdist.linux-armv7l/wheel/./gffutils
2026-03-31T17:10:35,258   running install_egg_info
2026-03-31T17:10:35,263   Copying gffutils.egg-info to build/bdist.linux-armv7l/wheel/./gffutils-0.14-py3.11.egg-info
2026-03-31T17:10:35,273   running install_scripts
2026-03-31T17:10:35,274   creating build/bdist.linux-armv7l/wheel/gffutils-0.14.data/scripts
2026-03-31T17:10:35,276   copying build/scripts-3.11/gffutils-cli -> build/bdist.linux-armv7l/wheel/gffutils-0.14.data/scripts
2026-03-31T17:10:35,279   changing mode of build/bdist.linux-armv7l/wheel/gffutils-0.14.data/scripts/gffutils-cli to 755
2026-03-31T17:10:35,290   creating build/bdist.linux-armv7l/wheel/gffutils-0.14.dist-info/WHEEL
2026-03-31T17:10:35,293   creating '/tmp/pip-wheel-l450usvo/.tmp-qtat0nsp/gffutils-0.14-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-03-31T17:10:35,296   adding 'gffutils/__init__.py'
2026-03-31T17:10:35,297   adding 'gffutils/attributes.py'
2026-03-31T17:10:35,299   adding 'gffutils/bins.py'
2026-03-31T17:10:35,300   adding 'gffutils/biopython_integration.py'
2026-03-31T17:10:35,302   adding 'gffutils/constants.py'
2026-03-31T17:10:35,303   adding 'gffutils/convert.py'
2026-03-31T17:10:35,310   adding 'gffutils/create.py'
2026-03-31T17:10:35,312   adding 'gffutils/exceptions.py'
2026-03-31T17:10:35,314   adding 'gffutils/feature.py'
2026-03-31T17:10:35,315   adding 'gffutils/gffwriter.py'
2026-03-31T17:10:35,318   adding 'gffutils/helpers.py'
2026-03-31T17:10:35,320   adding 'gffutils/inspect.py'
2026-03-31T17:10:35,328   adding 'gffutils/interface.py'
2026-03-31T17:10:35,330   adding 'gffutils/iterators.py'
2026-03-31T17:10:35,332   adding 'gffutils/merge_criteria.py'
2026-03-31T17:10:35,334   adding 'gffutils/parser.py'
2026-03-31T17:10:35,336   adding 'gffutils/pybedtools_integration.py'
2026-03-31T17:10:35,337   adding 'gffutils/version.py'
2026-03-31T17:10:35,339   adding 'gffutils/contrib/__init__.py'
2026-03-31T17:10:35,340   adding 'gffutils/contrib/plotting.py'
2026-03-31T17:10:35,343   adding 'gffutils/scripts/gffutils-cli'
2026-03-31T17:10:35,344   adding 'gffutils/scripts/gffutils-flybase-convert.py'
2026-03-31T17:10:35,346   adding 'gffutils/test/__init__.py'
2026-03-31T17:10:35,348   adding 'gffutils/test/attr_test_cases.py'
2026-03-31T17:10:35,349   adding 'gffutils/test/conftest.py'
2026-03-31T17:10:35,350   adding 'gffutils/test/expected.py'
2026-03-31T17:10:35,352   adding 'gffutils/test/feature_test.py'
2026-03-31T17:10:35,353   adding 'gffutils/test/helpers_test.py'
2026-03-31T17:10:35,355   adding 'gffutils/test/parser_test.py'
2026-03-31T17:10:35,356   adding 'gffutils/test/performance_evaluation.py'
2026-03-31T17:10:35,358   adding 'gffutils/test/synth_test_base.py'
2026-03-31T17:10:35,362   adding 'gffutils/test/test_1.py'
2026-03-31T17:10:35,364   adding 'gffutils/test/test_biopython_integration.py'
2026-03-31T17:10:35,365   adding 'gffutils/test/test_cli.py'
2026-03-31T17:10:35,368   adding 'gffutils/test/test_issues.py'
2026-03-31T17:10:35,370   adding 'gffutils/test/test_iterators.py'
2026-03-31T17:10:35,371   adding 'gffutils/test/test_merge.py'
2026-03-31T17:10:35,372   adding 'gffutils/test/test_merge_all.py'
2026-03-31T17:10:35,377   adding 'gffutils/test/data/F3-unique-3.v2.gff'
2026-03-31T17:10:35,378   adding 'gffutils/test/data/FBgn0031208.gff'
2026-03-31T17:10:35,380   adding 'gffutils/test/data/FBgn0031208.gtf'
2026-03-31T17:10:35,383   adding 'gffutils/test/data/FBgn0031208.gtf.db'
2026-03-31T17:10:35,394   adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_gene_ids.txt'
2026-03-31T17:10:35,404   adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.5000_transcript_ids.txt'
2026-03-31T17:10:35,406   adding 'gffutils/test/data/Saccharomyces_cerevisiae.R64-1-1.83.chromsizes.txt'
2026-03-31T17:10:35,407   adding 'gffutils/test/data/c_elegans_WS199_ann_gff.txt'
2026-03-31T17:10:35,408   adding 'gffutils/test/data/c_elegans_WS199_dna_shortened.fa'
2026-03-31T17:10:35,410   adding 'gffutils/test/data/c_elegans_WS199_shortened_gff.txt'
2026-03-31T17:10:35,411   adding 'gffutils/test/data/dm6-chr2L.fa'
2026-03-31T17:10:35,412   adding 'gffutils/test/data/dm6-chr2L.fa.fai'
2026-03-31T17:10:36,067   adding 'gffutils/test/data/dmel-all-no-analysis-r5.49_50k_lines.gff'
2026-03-31T17:10:36,124   adding 'gffutils/test/data/download-large-annotation-files.sh'
2026-03-31T17:10:36,125   adding 'gffutils/test/data/ensembl_gtf.txt'
2026-03-31T17:10:36,127   adding 'gffutils/test/data/gencode-v19.gtf'
2026-03-31T17:10:36,137   adding 'gffutils/test/data/gencode.vM8.5000_gene_ids.txt'
2026-03-31T17:10:36,147   adding 'gffutils/test/data/gencode.vM8.5000_transcript_ids.txt'
2026-03-31T17:10:36,149   adding 'gffutils/test/data/gencode.vM8.chromsizes.txt'
2026-03-31T17:10:36,150   adding 'gffutils/test/data/gff_example1.gff3'
2026-03-31T17:10:36,151   adding 'gffutils/test/data/gff_example1.gff3.gz'
2026-03-31T17:10:36,152   adding 'gffutils/test/data/glimmer_nokeyval.gff3'
2026-03-31T17:10:36,153   adding 'gffutils/test/data/gms2_example.gff3'
2026-03-31T17:10:36,154   adding 'gffutils/test/data/hybrid1.gff3'
2026-03-31T17:10:36,156   adding 'gffutils/test/data/intro_docs_example.gff'
2026-03-31T17:10:36,157   adding 'gffutils/test/data/issue167.gff'
2026-03-31T17:10:36,158   adding 'gffutils/test/data/issue174.gtf'
2026-03-31T17:10:36,159   adding 'gffutils/test/data/issue_197.gff'
2026-03-31T17:10:36,161   adding 'gffutils/test/data/jgi_gff2.txt'
2026-03-31T17:10:36,162   adding 'gffutils/test/data/keep-order-test.gtf'
2026-03-31T17:10:36,163   adding 'gffutils/test/data/keyval_sep_in_attrs.gff'
2026-03-31T17:10:36,164   adding 'gffutils/test/data/mouse_extra_comma.gff3'
2026-03-31T17:10:36,166   adding 'gffutils/test/data/ncbi_gff3.txt'
2026-03-31T17:10:36,167   adding 'gffutils/test/data/nonascii'
2026-03-31T17:10:36,168   adding 'gffutils/test/data/random-chr.gff'
2026-03-31T17:10:36,170   adding 'gffutils/test/data/sharr.gtf'
2026-03-31T17:10:36,171   adding 'gffutils/test/data/synthetic.gff3'
2026-03-31T17:10:36,172   adding 'gffutils/test/data/unsanitized.gff'
2026-03-31T17:10:36,173   adding 'gffutils/test/data/wormbase_gff2.txt'
2026-03-31T17:10:36,174   adding 'gffutils/test/data/wormbase_gff2_alt.txt'
2026-03-31T17:10:36,177   adding 'gffutils-0.14.data/scripts/gffutils-cli'
2026-03-31T17:10:36,180   adding 'gffutils-0.14.dist-info/licenses/LICENSE'
2026-03-31T17:10:36,181   adding 'gffutils-0.14.dist-info/METADATA'
2026-03-31T17:10:36,182   adding 'gffutils-0.14.dist-info/WHEEL'
2026-03-31T17:10:36,183   adding 'gffutils-0.14.dist-info/top_level.txt'
2026-03-31T17:10:36,184   adding 'gffutils-0.14.dist-info/RECORD'
2026-03-31T17:10:36,251   removing build/bdist.linux-armv7l/wheel
2026-03-31T17:10:36,373   Building wheel for gffutils (pyproject.toml): finished with status 'done'
2026-03-31T17:10:36,416   Created wheel for gffutils: filename=gffutils-0.14-py3-none-any.whl size=1636053 sha256=59829329b99850d11ee2e0e9a9e56567fea2fba41c8075399e2737a6a1d7789b
2026-03-31T17:10:36,417   Stored in directory: /tmp/pip-ephem-wheel-cache-sgy74k1a/wheels/b6/75/c5/26e6aa0bad63caab6ec31a270156b1ef1c0bbedc400b2d8f27
2026-03-31T17:10:36,430 Successfully built gffutils
2026-03-31T17:10:36,521 Removed build tracker: '/tmp/pip-build-tracker-d5adddcy'