2026-04-01T23:32:04,159 Created temporary directory: /tmp/pip-ephem-wheel-cache-d_n7_btl 2026-04-01T23:32:04,160 Created temporary directory: /tmp/pip-build-tracker-3ja3i1ts 2026-04-01T23:32:04,161 Initialized build tracking at /tmp/pip-build-tracker-3ja3i1ts 2026-04-01T23:32:04,162 Created build tracker: /tmp/pip-build-tracker-3ja3i1ts 2026-04-01T23:32:04,162 Entered build tracker: /tmp/pip-build-tracker-3ja3i1ts 2026-04-01T23:32:04,163 Created temporary directory: /tmp/pip-wheel-qbv56i6c 2026-04-01T23:32:04,166 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-01T23:32:04,168 Created temporary directory: /tmp/pip-ephem-wheel-cache-_k_cgwm0 2026-04-01T23:32:04,190 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-01T23:32:04,193 2 location(s) to search for versions of mhcgnomes: 2026-04-01T23:32:04,193 * https://pypi.org/simple/mhcgnomes/ 2026-04-01T23:32:04,193 * https://www.piwheels.org/simple/mhcgnomes/ 2026-04-01T23:32:04,194 Fetching project page and analyzing links: https://pypi.org/simple/mhcgnomes/ 2026-04-01T23:32:04,195 Getting page https://pypi.org/simple/mhcgnomes/ 2026-04-01T23:32:04,196 Found index url https://pypi.org/simple 2026-04-01T23:32:04,428 Fetched page https://pypi.org/simple/mhcgnomes/ as application/vnd.pypi.simple.v1+json 2026-04-01T23:32:04,449 Skipping link: No binaries permitted for mhcgnomes: 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https://files.pythonhosted.org/packages/3d/5d/79b132a913c8592ec350133c363ef44fbcc6524626bd4654158ac3409a83/mhcgnomes-1.3.0-py3-none-any.whl (from https://pypi.org/simple/mhcgnomes/) 2026-04-01T23:32:04,467 Found link https://files.pythonhosted.org/packages/d5/d8/8dd868e57c5ab19b338847fb154a2322903f1395ed498f65e9d2a472c82f/mhcgnomes-1.3.0.tar.gz (from https://pypi.org/simple/mhcgnomes/), version: 1.3.0 2026-04-01T23:32:04,468 Skipping link: No binaries permitted for mhcgnomes: https://files.pythonhosted.org/packages/39/ab/0f1229031f6c68fe227851bec1e01e5aaa3e6ee6906d20a28e61d65afc72/mhcgnomes-1.3.1-py3-none-any.whl (from https://pypi.org/simple/mhcgnomes/) 2026-04-01T23:32:04,468 Found link https://files.pythonhosted.org/packages/e8/c9/ef4492c5475aba5795399397e4ce18bfefcf889d2d181b2d85214db72661/mhcgnomes-1.3.1.tar.gz (from https://pypi.org/simple/mhcgnomes/), version: 1.3.1 2026-04-01T23:32:04,469 Skipping link: No binaries permitted for mhcgnomes: 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https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9) 2026-04-01T23:32:04,536 Found link https://files.pythonhosted.org/packages/ee/06/87ae55887a9d13e07d8dde7cb4cef11b0b42611b6274dba538422adcb84d/mhcgnomes-3.17.1.tar.gz (from https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9), version: 3.17.1 2026-04-01T23:32:04,536 Skipping link: No binaries permitted for mhcgnomes: https://files.pythonhosted.org/packages/0b/a4/4be388db99a714b29502e1f977a1d83e4a7489597c3295d59a16126e1683/mhcgnomes-3.18.0-py3-none-any.whl (from https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9) 2026-04-01T23:32:04,537 Found link https://files.pythonhosted.org/packages/d8/91/a93bb6a5fc014d3b43923880a1a31427f7ecba3cdf2c0837672087b639db/mhcgnomes-3.18.0.tar.gz (from https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9), version: 3.18.0 2026-04-01T23:32:04,538 Skipping link: No binaries permitted for mhcgnomes: https://files.pythonhosted.org/packages/a5/20/cb43b145d2e6022dc2de88b081634b5e55ffa24e773dbf19f0080b0cbbda/mhcgnomes-3.19.0-py3-none-any.whl (from https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9) 2026-04-01T23:32:04,539 Found link https://files.pythonhosted.org/packages/2c/73/a324943dfbef05d5bb125f5766d03aed33301fad4b1b6dbaa985e817eef3/mhcgnomes-3.19.0.tar.gz (from https://pypi.org/simple/mhcgnomes/) (requires-python:>=3.9), version: 3.19.0 2026-04-01T23:32:04,540 Fetching project page and analyzing links: https://www.piwheels.org/simple/mhcgnomes/ 2026-04-01T23:32:04,540 Getting page https://www.piwheels.org/simple/mhcgnomes/ 2026-04-01T23:32:04,542 Found index url https://www.piwheels.org/simple 2026-04-01T23:32:04,715 Fetched page https://www.piwheels.org/simple/mhcgnomes/ as text/html 2026-04-01T23:32:04,731 Skipping link: No binaries permitted for mhcgnomes: 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https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,757 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.2.1-py3-none-any.whl#sha256=5a1bb75e9d1aa4a28405a2cf383a957f212c8e6a1f6a5de0c1552b67114e50c2 (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,758 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.2.0-py3-none-any.whl#sha256=c128ff2bc8b2f30b3039074eae67dbb12cd186fa66f829224a96d75807ef56ad (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,758 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.1.0-py3-none-any.whl#sha256=7e10f2f15b04382894b77a22163e3bf8b6809f1c9dbdf275e8f459f907574a57 (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,759 Skipping link: No binaries permitted for mhcgnomes: 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https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,761 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.0.3-py3-none-any.whl#sha256=7b421f41014ec8a9eeb8ba607d1ac066bacbf103ee86c33830f7733510d8961b (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,762 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.0.2-py3-none-any.whl#sha256=5b024e14d1d09e576b0c8be09da45b48234916eb32fe4fa81f4f9f4b74d9ad40 (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,762 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.0.1-py3-none-any.whl#sha256=eb63cfd61b991d01922962867a5ddb4acb9992cbeb7f525a1727d2089c735938 (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,763 Skipping link: No binaries permitted for mhcgnomes: https://archive1.piwheels.org/simple/mhcgnomes/mhcgnomes-1.0.0-py3-none-any.whl#sha256=2917008a924040a71a2674b1351926b2aff318c8e150981560baf412aa488db8 (from https://www.piwheels.org/simple/mhcgnomes/) 2026-04-01T23:32:04,764 Skipping link: not a file: https://www.piwheels.org/simple/mhcgnomes/ 2026-04-01T23:32:04,764 Skipping link: not a file: https://pypi.org/simple/mhcgnomes/ 2026-04-01T23:32:04,790 Given no hashes to check 1 links for project 'mhcgnomes': discarding no candidates 2026-04-01T23:32:04,808 Collecting mhcgnomes==3.19.0 2026-04-01T23:32:04,810 Created temporary directory: /tmp/pip-unpack-d31wsphx 2026-04-01T23:32:05,058 Downloading mhcgnomes-3.19.0.tar.gz (839 kB) 2026-04-01T23:32:05,800 Added mhcgnomes==3.19.0 from https://files.pythonhosted.org/packages/2c/73/a324943dfbef05d5bb125f5766d03aed33301fad4b1b6dbaa985e817eef3/mhcgnomes-3.19.0.tar.gz to build tracker '/tmp/pip-build-tracker-3ja3i1ts' 2026-04-01T23:32:05,806 Created temporary directory: /tmp/pip-build-env-dvkgqpqz 2026-04-01T23:32:05,810 Installing build dependencies: started 2026-04-01T23:32:05,812 Running command pip subprocess to install build dependencies 2026-04-01T23:32:06,947 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-01T23:32:07,377 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-01T23:32:07,401 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-01T23:32:09,169 Collecting setuptools>=61.0 2026-04-01T23:32:09,267 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-01T23:32:09,540 Collecting wheel 2026-04-01T23:32:09,556 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-01T23:32:09,739 Collecting packaging>=24.0 2026-04-01T23:32:09,755 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-01T23:32:12,726 Installing collected packages: setuptools, packaging, wheel 2026-04-01T23:32:16,119 Creating /tmp/pip-build-env-dvkgqpqz/overlay/local/bin 2026-04-01T23:32:16,121 changing mode of /tmp/pip-build-env-dvkgqpqz/overlay/local/bin/wheel to 755 2026-04-01T23:32:16,143 Successfully installed packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-01T23:32:16,422 Installing build dependencies: finished with status 'done' 2026-04-01T23:32:16,428 Getting requirements to build wheel: started 2026-04-01T23:32:16,430 Running command Getting requirements to build wheel 2026-04-01T23:32:17,047 /tmp/pip-build-env-dvkgqpqz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-01T23:32:17,048 !! 2026-04-01T23:32:17,049 ******************************************************************************** 2026-04-01T23:32:17,050 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-01T23:32:17,051 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-01T23:32:17,051 or your builds will no longer be supported. 2026-04-01T23:32:17,053 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-01T23:32:17,053 ******************************************************************************** 2026-04-01T23:32:17,055 !! 2026-04-01T23:32:17,055 corresp(dist, value, root_dir) 2026-04-01T23:32:17,139 running egg_info 2026-04-01T23:32:17,145 writing mhcgnomes.egg-info/PKG-INFO 2026-04-01T23:32:17,151 writing dependency_links to mhcgnomes.egg-info/dependency_links.txt 2026-04-01T23:32:17,152 writing entry points to mhcgnomes.egg-info/entry_points.txt 2026-04-01T23:32:17,155 writing requirements to mhcgnomes.egg-info/requires.txt 2026-04-01T23:32:17,156 writing top-level names to mhcgnomes.egg-info/top_level.txt 2026-04-01T23:32:17,182 reading manifest file 'mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:17,191 reading manifest template 'MANIFEST.in' 2026-04-01T23:32:17,192 adding license file 'LICENSE' 2026-04-01T23:32:17,199 writing manifest file 'mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:17,296 Getting requirements to build wheel: finished with status 'done' 2026-04-01T23:32:17,300 Created temporary directory: /tmp/pip-modern-metadata-hti3s3d6 2026-04-01T23:32:17,302 Preparing metadata (pyproject.toml): started 2026-04-01T23:32:17,303 Running command Preparing metadata (pyproject.toml) 2026-04-01T23:32:17,889 /tmp/pip-build-env-dvkgqpqz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-01T23:32:17,889 !! 2026-04-01T23:32:17,891 ******************************************************************************** 2026-04-01T23:32:17,892 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-01T23:32:17,893 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-01T23:32:17,893 or your builds will no longer be supported. 2026-04-01T23:32:17,894 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-01T23:32:17,895 ******************************************************************************** 2026-04-01T23:32:17,896 !! 2026-04-01T23:32:17,897 corresp(dist, value, root_dir) 2026-04-01T23:32:17,976 running dist_info 2026-04-01T23:32:17,987 creating /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info 2026-04-01T23:32:17,988 writing /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/PKG-INFO 2026-04-01T23:32:17,994 writing dependency_links to /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/dependency_links.txt 2026-04-01T23:32:17,995 writing entry points to /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/entry_points.txt 2026-04-01T23:32:17,998 writing requirements to /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/requires.txt 2026-04-01T23:32:17,999 writing top-level names to /tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/top_level.txt 2026-04-01T23:32:18,001 writing manifest file '/tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:18,025 reading manifest file '/tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:18,027 reading manifest template 'MANIFEST.in' 2026-04-01T23:32:18,028 adding license file 'LICENSE' 2026-04-01T23:32:18,034 writing manifest file '/tmp/pip-modern-metadata-hti3s3d6/mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:18,036 creating '/tmp/pip-modern-metadata-hti3s3d6/mhcgnomes-3.19.0.dist-info' 2026-04-01T23:32:18,167 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-01T23:32:18,174 Source in /tmp/pip-wheel-qbv56i6c/mhcgnomes_b2df6d19c2654f208e14afd77983be51 has version 3.19.0, which satisfies requirement mhcgnomes==3.19.0 from https://files.pythonhosted.org/packages/2c/73/a324943dfbef05d5bb125f5766d03aed33301fad4b1b6dbaa985e817eef3/mhcgnomes-3.19.0.tar.gz 2026-04-01T23:32:18,175 Removed mhcgnomes==3.19.0 from https://files.pythonhosted.org/packages/2c/73/a324943dfbef05d5bb125f5766d03aed33301fad4b1b6dbaa985e817eef3/mhcgnomes-3.19.0.tar.gz from build tracker '/tmp/pip-build-tracker-3ja3i1ts' 2026-04-01T23:32:18,187 Created temporary directory: /tmp/pip-unpack-b2z_blzh 2026-04-01T23:32:18,188 Building wheels for collected packages: mhcgnomes 2026-04-01T23:32:18,192 Created temporary directory: /tmp/pip-wheel-ullxv4ud 2026-04-01T23:32:18,193 Destination directory: /tmp/pip-wheel-ullxv4ud 2026-04-01T23:32:18,194 Building wheel for mhcgnomes (pyproject.toml): started 2026-04-01T23:32:18,198 Running command Building wheel for mhcgnomes (pyproject.toml) 2026-04-01T23:32:18,763 /tmp/pip-build-env-dvkgqpqz/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-01T23:32:18,763 !! 2026-04-01T23:32:18,764 ******************************************************************************** 2026-04-01T23:32:18,765 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-01T23:32:18,766 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-01T23:32:18,766 or your builds will no longer be supported. 2026-04-01T23:32:18,767 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-01T23:32:18,768 ******************************************************************************** 2026-04-01T23:32:18,769 !! 2026-04-01T23:32:18,770 corresp(dist, value, root_dir) 2026-04-01T23:32:18,839 running bdist_wheel 2026-04-01T23:32:18,857 running build 2026-04-01T23:32:18,858 running build_py 2026-04-01T23:32:18,865 creating build/lib/mhcgnomes 2026-04-01T23:32:18,867 copying mhcgnomes/data.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,870 copying mhcgnomes/result.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,872 copying mhcgnomes/__init__.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,874 copying mhcgnomes/version.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,876 copying mhcgnomes/result_with_species.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,878 copying mhcgnomes/haplotype.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,881 copying mhcgnomes/parsing_helpers.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,883 copying mhcgnomes/allele_without_gene.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,885 copying mhcgnomes/mhc_class_helpers.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,887 copying mhcgnomes/gene_class_info.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,889 copying mhcgnomes/errors.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,891 copying mhcgnomes/supertype.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,894 copying mhcgnomes/token.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,896 copying mhcgnomes/class2_locus.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,898 copying mhcgnomes/tokenize.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,901 copying mhcgnomes/result_with_mhc_class.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,903 copying mhcgnomes/mutation.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,905 copying mhcgnomes/result_with_gene.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,907 copying mhcgnomes/result_sorting.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,909 copying mhcgnomes/standard_format.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,911 copying mhcgnomes/cli.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,913 copying mhcgnomes/token_substitution.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,915 copying mhcgnomes/mhc_class.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,917 copying mhcgnomes/parser.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,921 copying mhcgnomes/serotype.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,923 copying mhcgnomes/pair.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,926 copying mhcgnomes/gene.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,928 copying mhcgnomes/species.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,931 copying mhcgnomes/token_canonical_sequences.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,934 copying mhcgnomes/normalizing_set.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,936 copying mhcgnomes/allele_annotations.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,938 copying mhcgnomes/__main__.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,940 copying mhcgnomes/common.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,941 copying mhcgnomes/dataframe.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,943 copying mhcgnomes/result_with_multiple_alleles.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,946 copying mhcgnomes/function_api.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,948 copying mhcgnomes/normalizing_dictionary.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,951 copying mhcgnomes/allele.py -> build/lib/mhcgnomes 2026-04-01T23:32:18,954 creating build/lib/mhcgnomes/data 2026-04-01T23:32:18,955 copying mhcgnomes/data/combine_allele_aliases.py -> build/lib/mhcgnomes/data 2026-04-01T23:32:18,957 running egg_info 2026-04-01T23:32:18,968 writing mhcgnomes.egg-info/PKG-INFO 2026-04-01T23:32:18,973 writing dependency_links to mhcgnomes.egg-info/dependency_links.txt 2026-04-01T23:32:18,975 writing entry points to mhcgnomes.egg-info/entry_points.txt 2026-04-01T23:32:18,977 writing requirements to mhcgnomes.egg-info/requires.txt 2026-04-01T23:32:18,978 writing top-level names to mhcgnomes.egg-info/top_level.txt 2026-04-01T23:32:18,993 reading manifest file 'mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:19,002 reading manifest template 'MANIFEST.in' 2026-04-01T23:32:19,002 adding license file 'LICENSE' 2026-04-01T23:32:19,010 writing manifest file 'mhcgnomes.egg-info/SOURCES.txt' 2026-04-01T23:32:19,016 copying mhcgnomes/data/known_alleles.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,018 copying mhcgnomes/data/serotypes.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,021 copying mhcgnomes/data/species.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,026 copying mhcgnomes/data/default_alleles.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,028 copying mhcgnomes/data/haplotypes.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,031 copying mhcgnomes/data/underrepresented_taxa_source_registry.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,034 copying mhcgnomes/data/allele_aliases.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,039 copying mhcgnomes/data/heterodimers.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,041 copying mhcgnomes/data/curated_allele_aliases.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,044 copying mhcgnomes/data/supertypes.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,047 copying mhcgnomes/data/serotypes_generated.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,049 copying mhcgnomes/data/gene_aliases.yaml -> build/lib/mhcgnomes/data 2026-04-01T23:32:19,067 installing to build/bdist.linux-armv7l/wheel 2026-04-01T23:32:19,068 running install 2026-04-01T23:32:19,091 running install_lib 2026-04-01T23:32:19,097 creating build/bdist.linux-armv7l/wheel 2026-04-01T23:32:19,100 creating build/bdist.linux-armv7l/wheel/mhcgnomes 2026-04-01T23:32:19,101 copying build/lib/mhcgnomes/data.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,104 copying build/lib/mhcgnomes/result.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,106 copying build/lib/mhcgnomes/__init__.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,108 copying build/lib/mhcgnomes/version.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,110 copying build/lib/mhcgnomes/result_with_species.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,112 copying build/lib/mhcgnomes/haplotype.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,115 copying build/lib/mhcgnomes/parsing_helpers.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,117 copying build/lib/mhcgnomes/allele_without_gene.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,119 copying build/lib/mhcgnomes/mhc_class_helpers.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,121 copying build/lib/mhcgnomes/gene_class_info.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,123 copying build/lib/mhcgnomes/errors.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,125 copying build/lib/mhcgnomes/supertype.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,127 copying build/lib/mhcgnomes/token.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,129 copying build/lib/mhcgnomes/class2_locus.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,132 copying build/lib/mhcgnomes/tokenize.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,134 copying build/lib/mhcgnomes/result_with_mhc_class.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,136 copying build/lib/mhcgnomes/mutation.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,138 copying build/lib/mhcgnomes/result_with_gene.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,141 creating build/bdist.linux-armv7l/wheel/mhcgnomes/data 2026-04-01T23:32:19,142 copying build/lib/mhcgnomes/data/known_alleles.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,144 copying build/lib/mhcgnomes/data/serotypes.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,147 copying build/lib/mhcgnomes/data/combine_allele_aliases.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,149 copying build/lib/mhcgnomes/data/species.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,153 copying build/lib/mhcgnomes/data/default_alleles.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,155 copying build/lib/mhcgnomes/data/haplotypes.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,157 copying build/lib/mhcgnomes/data/underrepresented_taxa_source_registry.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,160 copying build/lib/mhcgnomes/data/allele_aliases.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,164 copying build/lib/mhcgnomes/data/heterodimers.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,166 copying build/lib/mhcgnomes/data/curated_allele_aliases.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,168 copying build/lib/mhcgnomes/data/supertypes.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,171 copying build/lib/mhcgnomes/data/serotypes_generated.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,173 copying build/lib/mhcgnomes/data/gene_aliases.yaml -> build/bdist.linux-armv7l/wheel/./mhcgnomes/data 2026-04-01T23:32:19,175 copying build/lib/mhcgnomes/result_sorting.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,178 copying build/lib/mhcgnomes/standard_format.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,180 copying build/lib/mhcgnomes/cli.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,182 copying build/lib/mhcgnomes/token_substitution.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,184 copying build/lib/mhcgnomes/mhc_class.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,186 copying build/lib/mhcgnomes/parser.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,190 copying build/lib/mhcgnomes/serotype.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,191 copying build/lib/mhcgnomes/pair.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,194 copying build/lib/mhcgnomes/gene.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,196 copying build/lib/mhcgnomes/species.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,199 copying build/lib/mhcgnomes/token_canonical_sequences.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,201 copying build/lib/mhcgnomes/normalizing_set.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,203 copying build/lib/mhcgnomes/allele_annotations.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,205 copying build/lib/mhcgnomes/__main__.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,207 copying build/lib/mhcgnomes/common.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,209 copying build/lib/mhcgnomes/dataframe.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,211 copying build/lib/mhcgnomes/result_with_multiple_alleles.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,213 copying build/lib/mhcgnomes/function_api.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,215 copying build/lib/mhcgnomes/normalizing_dictionary.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,218 copying build/lib/mhcgnomes/allele.py -> build/bdist.linux-armv7l/wheel/./mhcgnomes 2026-04-01T23:32:19,220 running install_egg_info 2026-04-01T23:32:19,225 Copying mhcgnomes.egg-info to build/bdist.linux-armv7l/wheel/./mhcgnomes-3.19.0-py3.11.egg-info 2026-04-01T23:32:19,237 running install_scripts 2026-04-01T23:32:19,251 creating build/bdist.linux-armv7l/wheel/mhcgnomes-3.19.0.dist-info/WHEEL 2026-04-01T23:32:19,254 creating '/tmp/pip-wheel-ullxv4ud/.tmp-knh_xnvt/mhcgnomes-3.19.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-01T23:32:19,256 adding 'mhcgnomes/__init__.py' 2026-04-01T23:32:19,258 adding 'mhcgnomes/__main__.py' 2026-04-01T23:32:19,260 adding 'mhcgnomes/allele.py' 2026-04-01T23:32:19,261 adding 'mhcgnomes/allele_annotations.py' 2026-04-01T23:32:19,263 adding 'mhcgnomes/allele_without_gene.py' 2026-04-01T23:32:19,264 adding 'mhcgnomes/class2_locus.py' 2026-04-01T23:32:19,266 adding 'mhcgnomes/cli.py' 2026-04-01T23:32:19,267 adding 'mhcgnomes/common.py' 2026-04-01T23:32:19,269 adding 'mhcgnomes/data.py' 2026-04-01T23:32:19,270 adding 'mhcgnomes/dataframe.py' 2026-04-01T23:32:19,272 adding 'mhcgnomes/errors.py' 2026-04-01T23:32:19,275 adding 'mhcgnomes/function_api.py' 2026-04-01T23:32:19,277 adding 'mhcgnomes/gene.py' 2026-04-01T23:32:19,278 adding 'mhcgnomes/gene_class_info.py' 2026-04-01T23:32:19,280 adding 'mhcgnomes/haplotype.py' 2026-04-01T23:32:19,281 adding 'mhcgnomes/mhc_class.py' 2026-04-01T23:32:19,283 adding 'mhcgnomes/mhc_class_helpers.py' 2026-04-01T23:32:19,284 adding 'mhcgnomes/mutation.py' 2026-04-01T23:32:19,286 adding 'mhcgnomes/normalizing_dictionary.py' 2026-04-01T23:32:19,287 adding 'mhcgnomes/normalizing_set.py' 2026-04-01T23:32:19,289 adding 'mhcgnomes/pair.py' 2026-04-01T23:32:19,298 adding 'mhcgnomes/parser.py' 2026-04-01T23:32:19,300 adding 'mhcgnomes/parsing_helpers.py' 2026-04-01T23:32:19,302 adding 'mhcgnomes/result.py' 2026-04-01T23:32:19,303 adding 'mhcgnomes/result_sorting.py' 2026-04-01T23:32:19,305 adding 'mhcgnomes/result_with_gene.py' 2026-04-01T23:32:19,306 adding 'mhcgnomes/result_with_mhc_class.py' 2026-04-01T23:32:19,308 adding 'mhcgnomes/result_with_multiple_alleles.py' 2026-04-01T23:32:19,309 adding 'mhcgnomes/result_with_species.py' 2026-04-01T23:32:19,311 adding 'mhcgnomes/serotype.py' 2026-04-01T23:32:19,316 adding 'mhcgnomes/species.py' 2026-04-01T23:32:19,318 adding 'mhcgnomes/standard_format.py' 2026-04-01T23:32:19,320 adding 'mhcgnomes/supertype.py' 2026-04-01T23:32:19,321 adding 'mhcgnomes/token.py' 2026-04-01T23:32:19,323 adding 'mhcgnomes/token_canonical_sequences.py' 2026-04-01T23:32:19,324 adding 'mhcgnomes/token_substitution.py' 2026-04-01T23:32:19,326 adding 'mhcgnomes/tokenize.py' 2026-04-01T23:32:19,327 adding 'mhcgnomes/version.py' 2026-04-01T23:32:19,343 adding 'mhcgnomes/data/allele_aliases.yaml' 2026-04-01T23:32:19,346 adding 'mhcgnomes/data/combine_allele_aliases.py' 2026-04-01T23:32:19,349 adding 'mhcgnomes/data/curated_allele_aliases.yaml' 2026-04-01T23:32:19,350 adding 'mhcgnomes/data/default_alleles.yaml' 2026-04-01T23:32:19,351 adding 'mhcgnomes/data/gene_aliases.yaml' 2026-04-01T23:32:19,353 adding 'mhcgnomes/data/haplotypes.yaml' 2026-04-01T23:32:19,354 adding 'mhcgnomes/data/heterodimers.yaml' 2026-04-01T23:32:19,355 adding 'mhcgnomes/data/known_alleles.yaml' 2026-04-01T23:32:19,358 adding 'mhcgnomes/data/serotypes.yaml' 2026-04-01T23:32:19,360 adding 'mhcgnomes/data/serotypes_generated.yaml' 2026-04-01T23:32:19,368 adding 'mhcgnomes/data/species.yaml' 2026-04-01T23:32:19,370 adding 'mhcgnomes/data/supertypes.yaml' 2026-04-01T23:32:19,375 adding 'mhcgnomes/data/underrepresented_taxa_source_registry.yaml' 2026-04-01T23:32:19,378 adding 'mhcgnomes-3.19.0.dist-info/licenses/LICENSE' 2026-04-01T23:32:19,382 adding 'mhcgnomes-3.19.0.dist-info/METADATA' 2026-04-01T23:32:19,383 adding 'mhcgnomes-3.19.0.dist-info/WHEEL' 2026-04-01T23:32:19,384 adding 'mhcgnomes-3.19.0.dist-info/entry_points.txt' 2026-04-01T23:32:19,385 adding 'mhcgnomes-3.19.0.dist-info/top_level.txt' 2026-04-01T23:32:19,386 adding 'mhcgnomes-3.19.0.dist-info/RECORD' 2026-04-01T23:32:19,390 removing build/bdist.linux-armv7l/wheel 2026-04-01T23:32:19,501 Building wheel for mhcgnomes (pyproject.toml): finished with status 'done' 2026-04-01T23:32:19,508 Created wheel for mhcgnomes: filename=mhcgnomes-3.19.0-py3-none-any.whl size=166555 sha256=1c66901423e983f3f95ff0469716d742f8ddb3ab0e5f5e4bd2738e322b1f345b 2026-04-01T23:32:19,509 Stored in directory: /tmp/pip-ephem-wheel-cache-_k_cgwm0/wheels/83/78/56/906b4f9ff0efb58abaad582a58a12868f39ed266c3692020f5 2026-04-01T23:32:19,532 Successfully built mhcgnomes 2026-04-01T23:32:19,543 Removed build tracker: '/tmp/pip-build-tracker-3ja3i1ts'