2026-04-03T06:35:39,094 Created temporary directory: /tmp/pip-ephem-wheel-cache-4o15aa3z 2026-04-03T06:35:39,096 Created temporary directory: /tmp/pip-build-tracker-3keo7opf 2026-04-03T06:35:39,096 Initialized build tracking at /tmp/pip-build-tracker-3keo7opf 2026-04-03T06:35:39,097 Created build tracker: /tmp/pip-build-tracker-3keo7opf 2026-04-03T06:35:39,097 Entered build tracker: /tmp/pip-build-tracker-3keo7opf 2026-04-03T06:35:39,098 Created temporary directory: /tmp/pip-wheel-39cbe8uh 2026-04-03T06:35:39,101 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T06:35:39,103 Created temporary directory: /tmp/pip-ephem-wheel-cache-9wbvc7z1 2026-04-03T06:35:39,128 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T06:35:39,131 2 location(s) to search for versions of pirlygenes: 2026-04-03T06:35:39,131 * https://pypi.org/simple/pirlygenes/ 2026-04-03T06:35:39,131 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:35:39,132 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-03T06:35:39,133 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-03T06:35:39,134 Found index url https://pypi.org/simple 2026-04-03T06:35:39,366 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-03T06:35:39,368 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:35:39,369 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-03T06:35:39,370 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:35:39,371 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-03T06:35:39,372 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:35:39,372 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-03T06:35:39,373 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:35:39,374 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:35:39,375 Found index url https://www.piwheels.org/simple 2026-04-03T06:35:39,557 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-03T06:35:39,559 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:35:39,559 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-03T06:35:39,578 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-03T06:35:39,596 Collecting pirlygenes==1.7.0 2026-04-03T06:35:39,599 Created temporary directory: /tmp/pip-unpack-m2khj7yr 2026-04-03T06:35:39,834 Downloading pirlygenes-1.7.0.tar.gz (665 kB) 2026-04-03T06:35:40,127 Added pirlygenes==1.7.0 from https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz to build tracker '/tmp/pip-build-tracker-3keo7opf' 2026-04-03T06:35:40,133 Created temporary directory: /tmp/pip-build-env-o9gxibsf 2026-04-03T06:35:40,137 Installing build dependencies: started 2026-04-03T06:35:40,139 Running command pip subprocess to install build dependencies 2026-04-03T06:35:41,271 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-03T06:35:41,681 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T06:35:41,705 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T06:35:43,543 Collecting setuptools>=60 2026-04-03T06:35:43,622 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-03T06:35:44,011 Collecting setuptools-scm>=8.0 2026-04-03T06:35:44,029 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-03T06:35:44,111 Collecting vcs-versioning>=1.0.0.dev0 2026-04-03T06:35:44,129 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-03T06:35:44,311 Collecting packaging>=20 2026-04-03T06:35:44,327 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-03T06:35:47,567 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-03T06:35:51,715 Creating /tmp/pip-build-env-o9gxibsf/overlay/local/bin 2026-04-03T06:35:51,717 changing mode of /tmp/pip-build-env-o9gxibsf/overlay/local/bin/vcs-versioning to 755 2026-04-03T06:35:51,838 changing mode of /tmp/pip-build-env-o9gxibsf/overlay/local/bin/setuptools-scm to 755 2026-04-03T06:35:51,866 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-03T06:35:52,154 Installing build dependencies: finished with status 'done' 2026-04-03T06:35:52,170 Getting requirements to build wheel: started 2026-04-03T06:35:52,171 Running command Getting requirements to build wheel 2026-04-03T06:35:52,901 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:35:53,011 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:53,012 !! 2026-04-03T06:35:53,013 ******************************************************************************** 2026-04-03T06:35:53,013 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:53,014 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:53,016 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:53,016 ******************************************************************************** 2026-04-03T06:35:53,017 !! 2026-04-03T06:35:53,018 dist._finalize_license_expression() 2026-04-03T06:35:53,019 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:53,019 !! 2026-04-03T06:35:53,021 ******************************************************************************** 2026-04-03T06:35:53,021 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:53,022 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:53,023 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:53,024 ******************************************************************************** 2026-04-03T06:35:53,025 !! 2026-04-03T06:35:53,025 self._finalize_license_expression() 2026-04-03T06:35:53,026 running egg_info 2026-04-03T06:35:53,033 writing pirlygenes.egg-info/PKG-INFO 2026-04-03T06:35:53,037 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:35:53,039 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-03T06:35:53,041 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-03T06:35:53,042 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-03T06:35:53,084 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:35:53,085 return get_active_overrides().subprocess_timeout 2026-04-03T06:35:53,092 listing git files failed - pretending there aren't any 2026-04-03T06:35:53,103 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:53,110 adding license file 'LICENSE' 2026-04-03T06:35:53,115 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:53,221 Getting requirements to build wheel: finished with status 'done' 2026-04-03T06:35:53,224 Created temporary directory: /tmp/pip-modern-metadata-o3luev93 2026-04-03T06:35:53,227 Preparing metadata (pyproject.toml): started 2026-04-03T06:35:53,228 Running command Preparing metadata (pyproject.toml) 2026-04-03T06:35:53,853 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:35:53,957 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:53,957 !! 2026-04-03T06:35:53,959 ******************************************************************************** 2026-04-03T06:35:53,959 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:53,961 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:53,962 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:53,962 ******************************************************************************** 2026-04-03T06:35:53,964 !! 2026-04-03T06:35:53,964 dist._finalize_license_expression() 2026-04-03T06:35:53,965 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:53,965 !! 2026-04-03T06:35:53,967 ******************************************************************************** 2026-04-03T06:35:53,967 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:53,968 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:53,969 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:53,970 ******************************************************************************** 2026-04-03T06:35:53,971 !! 2026-04-03T06:35:53,972 self._finalize_license_expression() 2026-04-03T06:35:53,972 running dist_info 2026-04-03T06:35:53,986 creating /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info 2026-04-03T06:35:53,988 writing /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/PKG-INFO 2026-04-03T06:35:53,991 writing dependency_links to /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:35:53,993 writing entry points to /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/entry_points.txt 2026-04-03T06:35:53,994 writing requirements to /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/requires.txt 2026-04-03T06:35:53,995 writing top-level names to /tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/top_level.txt 2026-04-03T06:35:53,997 writing manifest file '/tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:54,033 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:35:54,033 return get_active_overrides().subprocess_timeout 2026-04-03T06:35:54,040 listing git files failed - pretending there aren't any 2026-04-03T06:35:54,047 reading manifest file '/tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:54,049 adding license file 'LICENSE' 2026-04-03T06:35:54,053 writing manifest file '/tmp/pip-modern-metadata-o3luev93/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:54,054 creating '/tmp/pip-modern-metadata-o3luev93/pirlygenes-1.7.0.dist-info' 2026-04-03T06:35:54,189 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-03T06:35:54,194 Source in /tmp/pip-wheel-39cbe8uh/pirlygenes_a11e7e8227e14fdab61b9fb2370ac0b4 has version 1.7.0, which satisfies requirement pirlygenes==1.7.0 from https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz 2026-04-03T06:35:54,195 Removed pirlygenes==1.7.0 from https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz from build tracker '/tmp/pip-build-tracker-3keo7opf' 2026-04-03T06:35:54,202 Created temporary directory: /tmp/pip-unpack-wp4flacz 2026-04-03T06:35:54,202 Building wheels for collected packages: pirlygenes 2026-04-03T06:35:54,207 Created temporary directory: /tmp/pip-wheel-ootby6bg 2026-04-03T06:35:54,207 Destination directory: /tmp/pip-wheel-ootby6bg 2026-04-03T06:35:54,209 Building wheel for pirlygenes (pyproject.toml): started 2026-04-03T06:35:54,211 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-03T06:35:54,833 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:35:54,935 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:54,936 !! 2026-04-03T06:35:54,937 ******************************************************************************** 2026-04-03T06:35:54,937 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:54,939 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:54,940 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:54,940 ******************************************************************************** 2026-04-03T06:35:54,942 !! 2026-04-03T06:35:54,942 dist._finalize_license_expression() 2026-04-03T06:35:54,943 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:35:54,944 !! 2026-04-03T06:35:54,945 ******************************************************************************** 2026-04-03T06:35:54,945 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:35:54,947 License :: OSI Approved :: Apache Software License 2026-04-03T06:35:54,948 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:35:54,948 ******************************************************************************** 2026-04-03T06:35:54,949 !! 2026-04-03T06:35:54,949 self._finalize_license_expression() 2026-04-03T06:35:54,950 running bdist_wheel 2026-04-03T06:35:54,973 running build 2026-04-03T06:35:54,973 running build_py 2026-04-03T06:35:54,975 creating build/lib/pirlygenes 2026-04-03T06:35:54,978 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-03T06:35:54,980 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-03T06:35:54,982 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-03T06:35:54,984 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-03T06:35:54,986 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-03T06:35:54,988 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-03T06:35:54,990 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-03T06:35:54,992 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-03T06:35:54,993 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-03T06:35:54,996 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-03T06:35:54,998 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-03T06:35:55,000 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-03T06:35:55,002 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-03T06:35:55,004 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-03T06:35:55,006 running egg_info 2026-04-03T06:35:55,022 writing pirlygenes.egg-info/PKG-INFO 2026-04-03T06:35:55,025 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:35:55,026 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-03T06:35:55,027 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-03T06:35:55,028 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-03T06:35:55,058 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:35:55,058 return get_active_overrides().subprocess_timeout 2026-04-03T06:35:55,065 listing git files failed - pretending there aren't any 2026-04-03T06:35:55,072 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:55,077 adding license file 'LICENSE' 2026-04-03T06:35:55,081 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:35:55,084 /tmp/pip-build-env-o9gxibsf/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-03T06:35:55,085 !! 2026-04-03T06:35:55,086 ******************************************************************************** 2026-04-03T06:35:55,086 ############################ 2026-04-03T06:35:55,087 # Package would be ignored # 2026-04-03T06:35:55,088 ############################ 2026-04-03T06:35:55,088 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-03T06:35:55,089 but it is absent from setuptools' `packages` configuration. 2026-04-03T06:35:55,090 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-03T06:35:55,090 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-03T06:35:55,091 to the `packages` configuration field. 2026-04-03T06:35:55,092 Alternatively, you can also rely on setuptools' discovery methods 2026-04-03T06:35:55,092 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-03T06:35:55,093 instead of `find_packages(...)`/`find:`). 2026-04-03T06:35:55,094 You can read more about "package discovery" on setuptools documentation page: 2026-04-03T06:35:55,095 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-03T06:35:55,095 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-03T06:35:55,096 already explicitly excluding 'pirlygenes.data' via 2026-04-03T06:35:55,096 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-03T06:35:55,097 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-03T06:35:55,098 combination with a more fine grained `package-data` configuration. 2026-04-03T06:35:55,099 You can read more about "package data files" on setuptools documentation page: 2026-04-03T06:35:55,100 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-03T06:35:55,101 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-03T06:35:55,101 even if it does not contain any `.py` files. 2026-04-03T06:35:55,102 On the other hand, currently there is no concept of package data 2026-04-03T06:35:55,102 directory, all directories are treated like packages. 2026-04-03T06:35:55,103 ******************************************************************************** 2026-04-03T06:35:55,103 !! 2026-04-03T06:35:55,104 check.warn(importable) 2026-04-03T06:35:55,104 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-03T06:35:55,105 creating build/lib/pirlygenes/data 2026-04-03T06:35:55,105 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,106 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,107 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,107 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,108 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,108 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,110 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,114 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,117 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,121 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,123 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,126 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,128 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-03T06:35:55,144 installing to build/bdist.linux-armv7l/wheel 2026-04-03T06:35:55,145 running install 2026-04-03T06:35:55,168 running install_lib 2026-04-03T06:35:55,176 creating build/bdist.linux-armv7l/wheel 2026-04-03T06:35:55,178 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-03T06:35:55,179 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,181 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,183 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,186 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,188 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,190 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,192 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,193 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,195 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,197 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,199 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,202 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-03T06:35:55,203 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,204 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,207 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,210 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,212 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,214 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,216 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,217 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,219 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,222 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,225 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,228 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,230 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:35:55,232 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,234 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,237 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,238 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:35:55,240 running install_egg_info 2026-04-03T06:35:55,248 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-1.7.0-py3.11.egg-info 2026-04-03T06:35:55,260 running install_scripts 2026-04-03T06:35:55,272 creating build/bdist.linux-armv7l/wheel/pirlygenes-1.7.0.dist-info/WHEEL 2026-04-03T06:35:55,275 creating '/tmp/pip-wheel-ootby6bg/.tmp-uf3f1op0/pirlygenes-1.7.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-03T06:35:55,278 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-03T06:35:55,279 adding 'pirlygenes/__init__.py' 2026-04-03T06:35:55,281 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-03T06:35:55,282 adding 'pirlygenes/cli.py' 2026-04-03T06:35:55,284 adding 'pirlygenes/common.py' 2026-04-03T06:35:55,285 adding 'pirlygenes/gene_ids.py' 2026-04-03T06:35:55,287 adding 'pirlygenes/gene_names.py' 2026-04-03T06:35:55,289 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-03T06:35:55,291 adding 'pirlygenes/gene_sets_old.py' 2026-04-03T06:35:55,292 adding 'pirlygenes/load_dataset.py' 2026-04-03T06:35:55,294 adding 'pirlygenes/load_expression.py' 2026-04-03T06:35:55,295 adding 'pirlygenes/plot.py' 2026-04-03T06:35:55,297 adding 'pirlygenes/plot_data_helpers.py' 2026-04-03T06:35:55,299 adding 'pirlygenes/transcript_to_gene.py' 2026-04-03T06:35:55,300 adding 'pirlygenes/version.py' 2026-04-03T06:35:55,302 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-03T06:35:55,305 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-03T06:35:55,307 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-03T06:35:55,308 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-03T06:35:55,311 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-03T06:35:55,313 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-03T06:35:55,318 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-03T06:35:55,320 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-03T06:35:55,326 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-03T06:35:55,328 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-03T06:35:55,329 adding 'pirlygenes/data/interferon-response.csv' 2026-04-03T06:35:55,331 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-03T06:35:55,332 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-03T06:35:55,335 adding 'pirlygenes-1.7.0.dist-info/licenses/LICENSE' 2026-04-03T06:35:55,338 adding 'pirlygenes-1.7.0.dist-info/METADATA' 2026-04-03T06:35:55,339 adding 'pirlygenes-1.7.0.dist-info/WHEEL' 2026-04-03T06:35:55,340 adding 'pirlygenes-1.7.0.dist-info/entry_points.txt' 2026-04-03T06:35:55,341 adding 'pirlygenes-1.7.0.dist-info/top_level.txt' 2026-04-03T06:35:55,342 adding 'pirlygenes-1.7.0.dist-info/RECORD' 2026-04-03T06:35:55,344 removing build/bdist.linux-armv7l/wheel 2026-04-03T06:35:55,460 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-03T06:35:55,466 Created wheel for pirlygenes: filename=pirlygenes-1.7.0-py3-none-any.whl size=88101 sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 2026-04-03T06:35:55,467 Stored in directory: /tmp/pip-ephem-wheel-cache-9wbvc7z1/wheels/2b/e9/fe/e16b4cdb7efd3a5ac40074ba0a6188e8438b512b970bc13fef 2026-04-03T06:35:55,480 Successfully built pirlygenes 2026-04-03T06:35:55,485 Removed build tracker: '/tmp/pip-build-tracker-3keo7opf'