2026-04-03T06:39:06,886 Created temporary directory: /tmp/pip-ephem-wheel-cache-y6g10z4q
2026-04-03T06:39:06,889 Created temporary directory: /tmp/pip-build-tracker-5xggqbkx
2026-04-03T06:39:06,889 Initialized build tracking at /tmp/pip-build-tracker-5xggqbkx
2026-04-03T06:39:06,890 Created build tracker: /tmp/pip-build-tracker-5xggqbkx
2026-04-03T06:39:06,891 Entered build tracker: /tmp/pip-build-tracker-5xggqbkx
2026-04-03T06:39:06,892 Created temporary directory: /tmp/pip-wheel-0oqs9cp5
2026-04-03T06:39:06,895 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-03T06:39:06,898 Created temporary directory: /tmp/pip-ephem-wheel-cache-kpvddttk
2026-04-03T06:39:06,925 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-03T06:39:06,929 2 location(s) to search for versions of pirlygenes:
2026-04-03T06:39:06,929 * https://pypi.org/simple/pirlygenes/
2026-04-03T06:39:06,929 * https://www.piwheels.org/simple/pirlygenes/
2026-04-03T06:39:06,930 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/
2026-04-03T06:39:06,931 Getting page https://pypi.org/simple/pirlygenes/
2026-04-03T06:39:06,933 Found index url https://pypi.org/simple
2026-04-03T06:39:07,107 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json
2026-04-03T06:39:07,110   Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9)
2026-04-03T06:39:07,111   Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0
2026-04-03T06:39:07,112   Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9)
2026-04-03T06:39:07,113   Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0
2026-04-03T06:39:07,114   Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9)
2026-04-03T06:39:07,115   Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1
2026-04-03T06:39:07,117 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/
2026-04-03T06:39:07,118 Getting page https://www.piwheels.org/simple/pirlygenes/
2026-04-03T06:39:07,119 Found index url https://www.piwheels.org/simple
2026-04-03T06:39:07,320 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html
2026-04-03T06:39:07,322   Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9)
2026-04-03T06:39:07,323 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/
2026-04-03T06:39:07,324 Skipping link: not a file: https://pypi.org/simple/pirlygenes/
2026-04-03T06:39:07,348 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates
2026-04-03T06:39:07,369 Collecting pirlygenes==1.8.0
2026-04-03T06:39:07,372   Created temporary directory: /tmp/pip-unpack-dtxnlnoj
2026-04-03T06:39:07,633   Downloading pirlygenes-1.8.0.tar.gz (666 kB)
2026-04-03T06:39:08,030   Added pirlygenes==1.8.0 from https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz to build tracker '/tmp/pip-build-tracker-5xggqbkx'
2026-04-03T06:39:08,037   Created temporary directory: /tmp/pip-build-env-yd0f2h_1
2026-04-03T06:39:08,042   Installing build dependencies: started
2026-04-03T06:39:08,043   Running command pip subprocess to install build dependencies
2026-04-03T06:39:09,316   Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11)
2026-04-03T06:39:09,776   DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453
2026-04-03T06:39:09,806   Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple
2026-04-03T06:39:11,621   Collecting setuptools>=60
2026-04-03T06:39:11,713     Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB)
2026-04-03T06:39:12,135   Collecting setuptools-scm>=8.0
2026-04-03T06:39:12,151     Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB)
2026-04-03T06:39:12,233   Collecting vcs-versioning>=1.0.0.dev0
2026-04-03T06:39:12,250     Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB)
2026-04-03T06:39:12,426   Collecting packaging>=20
2026-04-03T06:39:12,440     Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB)
2026-04-03T06:39:15,459   Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm
2026-04-03T06:39:19,124     Creating /tmp/pip-build-env-yd0f2h_1/overlay/local/bin
2026-04-03T06:39:19,126     changing mode of /tmp/pip-build-env-yd0f2h_1/overlay/local/bin/vcs-versioning to 755
2026-04-03T06:39:19,240     changing mode of /tmp/pip-build-env-yd0f2h_1/overlay/local/bin/setuptools-scm to 755
2026-04-03T06:39:19,270   Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1
2026-04-03T06:39:19,560   Installing build dependencies: finished with status 'done'
2026-04-03T06:39:19,575   Getting requirements to build wheel: started
2026-04-03T06:39:19,576   Running command Getting requirements to build wheel
2026-04-03T06:39:20,217   toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning']
2026-04-03T06:39:20,328   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:20,329   !!

2026-04-03T06:39:20,330           ********************************************************************************
2026-04-03T06:39:20,330           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:20,332           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:20,333           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:20,334           ********************************************************************************

2026-04-03T06:39:20,335   !!
2026-04-03T06:39:20,336     dist._finalize_license_expression()
2026-04-03T06:39:20,337   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:20,337   !!

2026-04-03T06:39:20,338           ********************************************************************************
2026-04-03T06:39:20,339           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:20,340           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:20,341           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:20,341           ********************************************************************************

2026-04-03T06:39:20,342   !!
2026-04-03T06:39:20,343     self._finalize_license_expression()
2026-04-03T06:39:20,343   running egg_info
2026-04-03T06:39:20,350   writing pirlygenes.egg-info/PKG-INFO
2026-04-03T06:39:20,354   writing dependency_links to pirlygenes.egg-info/dependency_links.txt
2026-04-03T06:39:20,355   writing entry points to pirlygenes.egg-info/entry_points.txt
2026-04-03T06:39:20,357   writing requirements to pirlygenes.egg-info/requires.txt
2026-04-03T06:39:20,358   writing top-level names to pirlygenes.egg-info/top_level.txt
2026-04-03T06:39:20,398   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-03T06:39:20,398     return get_active_overrides().subprocess_timeout
2026-04-03T06:39:20,405   listing git files failed - pretending there aren't any
2026-04-03T06:39:20,414   reading manifest file 'pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:20,422   adding license file 'LICENSE'
2026-04-03T06:39:20,427   writing manifest file 'pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:20,531   Getting requirements to build wheel: finished with status 'done'
2026-04-03T06:39:20,535   Created temporary directory: /tmp/pip-modern-metadata-2gp9irxw
2026-04-03T06:39:20,538   Preparing metadata (pyproject.toml): started
2026-04-03T06:39:20,539   Running command Preparing metadata (pyproject.toml)
2026-04-03T06:39:21,150   toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning']
2026-04-03T06:39:21,257   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:21,258   !!

2026-04-03T06:39:21,259           ********************************************************************************
2026-04-03T06:39:21,260           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:21,261           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:21,262           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:21,263           ********************************************************************************

2026-04-03T06:39:21,264   !!
2026-04-03T06:39:21,265     dist._finalize_license_expression()
2026-04-03T06:39:21,266   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:21,266   !!

2026-04-03T06:39:21,268           ********************************************************************************
2026-04-03T06:39:21,268           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:21,269           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:21,271           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:21,271           ********************************************************************************

2026-04-03T06:39:21,273   !!
2026-04-03T06:39:21,274     self._finalize_license_expression()
2026-04-03T06:39:21,274   running dist_info
2026-04-03T06:39:21,287   creating /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info
2026-04-03T06:39:21,288   writing /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/PKG-INFO
2026-04-03T06:39:21,292   writing dependency_links to /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/dependency_links.txt
2026-04-03T06:39:21,294   writing entry points to /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/entry_points.txt
2026-04-03T06:39:21,295   writing requirements to /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/requires.txt
2026-04-03T06:39:21,296   writing top-level names to /tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/top_level.txt
2026-04-03T06:39:21,298   writing manifest file '/tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:21,335   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-03T06:39:21,335     return get_active_overrides().subprocess_timeout
2026-04-03T06:39:21,341   listing git files failed - pretending there aren't any
2026-04-03T06:39:21,349   reading manifest file '/tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:21,351   adding license file 'LICENSE'
2026-04-03T06:39:21,355   writing manifest file '/tmp/pip-modern-metadata-2gp9irxw/pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:21,356   creating '/tmp/pip-modern-metadata-2gp9irxw/pirlygenes-1.8.0.dist-info'
2026-04-03T06:39:21,491   Preparing metadata (pyproject.toml): finished with status 'done'
2026-04-03T06:39:21,497   Source in /tmp/pip-wheel-0oqs9cp5/pirlygenes_c141cfcb211a4b949e626bd301afbd57 has version 1.8.0, which satisfies requirement pirlygenes==1.8.0 from https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz
2026-04-03T06:39:21,498   Removed pirlygenes==1.8.0 from https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz from build tracker '/tmp/pip-build-tracker-5xggqbkx'
2026-04-03T06:39:21,504 Created temporary directory: /tmp/pip-unpack-8_dwydlh
2026-04-03T06:39:21,505 Building wheels for collected packages: pirlygenes
2026-04-03T06:39:21,509   Created temporary directory: /tmp/pip-wheel-7opxgr7g
2026-04-03T06:39:21,510   Destination directory: /tmp/pip-wheel-7opxgr7g
2026-04-03T06:39:21,512   Building wheel for pirlygenes (pyproject.toml): started
2026-04-03T06:39:21,514   Running command Building wheel for pirlygenes (pyproject.toml)
2026-04-03T06:39:22,114   toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning']
2026-04-03T06:39:22,216   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:22,216   !!

2026-04-03T06:39:22,218           ********************************************************************************
2026-04-03T06:39:22,218           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:22,220           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:22,221           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:22,222           ********************************************************************************

2026-04-03T06:39:22,223   !!
2026-04-03T06:39:22,224     dist._finalize_license_expression()
2026-04-03T06:39:22,225   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated.
2026-04-03T06:39:22,225   !!

2026-04-03T06:39:22,227           ********************************************************************************
2026-04-03T06:39:22,227           Please consider removing the following classifiers in favor of a SPDX license expression:

2026-04-03T06:39:22,228           License :: OSI Approved :: Apache Software License

2026-04-03T06:39:22,229           See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details.
2026-04-03T06:39:22,230           ********************************************************************************

2026-04-03T06:39:22,231   !!
2026-04-03T06:39:22,231     self._finalize_license_expression()
2026-04-03T06:39:22,232   running bdist_wheel
2026-04-03T06:39:22,254   running build
2026-04-03T06:39:22,254   running build_py
2026-04-03T06:39:22,256   creating build/lib/pirlygenes
2026-04-03T06:39:22,259   copying pirlygenes/__init__.py -> build/lib/pirlygenes
2026-04-03T06:39:22,261   copying pirlygenes/load_dataset.py -> build/lib/pirlygenes
2026-04-03T06:39:22,263   copying pirlygenes/version.py -> build/lib/pirlygenes
2026-04-03T06:39:22,265   copying pirlygenes/gene_names.py -> build/lib/pirlygenes
2026-04-03T06:39:22,267   copying pirlygenes/load_expression.py -> build/lib/pirlygenes
2026-04-03T06:39:22,269   copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes
2026-04-03T06:39:22,271   copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes
2026-04-03T06:39:22,274   copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes
2026-04-03T06:39:22,277   copying pirlygenes/cli.py -> build/lib/pirlygenes
2026-04-03T06:39:22,278   copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes
2026-04-03T06:39:22,281   copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes
2026-04-03T06:39:22,283   copying pirlygenes/plot.py -> build/lib/pirlygenes
2026-04-03T06:39:22,286   copying pirlygenes/gene_ids.py -> build/lib/pirlygenes
2026-04-03T06:39:22,288   copying pirlygenes/common.py -> build/lib/pirlygenes
2026-04-03T06:39:22,289   running egg_info
2026-04-03T06:39:22,304   writing pirlygenes.egg-info/PKG-INFO
2026-04-03T06:39:22,308   writing dependency_links to pirlygenes.egg-info/dependency_links.txt
2026-04-03T06:39:22,309   writing entry points to pirlygenes.egg-info/entry_points.txt
2026-04-03T06:39:22,311   writing requirements to pirlygenes.egg-info/requires.txt
2026-04-03T06:39:22,312   writing top-level names to pirlygenes.egg-info/top_level.txt
2026-04-03T06:39:22,341   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly.
2026-04-03T06:39:22,342     return get_active_overrides().subprocess_timeout
2026-04-03T06:39:22,348   listing git files failed - pretending there aren't any
2026-04-03T06:39:22,355   reading manifest file 'pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:22,361   adding license file 'LICENSE'
2026-04-03T06:39:22,365   writing manifest file 'pirlygenes.egg-info/SOURCES.txt'
2026-04-03T06:39:22,368   /tmp/pip-build-env-yd0f2h_1/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration.
2026-04-03T06:39:22,369   !!

2026-04-03T06:39:22,370           ********************************************************************************
2026-04-03T06:39:22,371           ############################
2026-04-03T06:39:22,371           # Package would be ignored #
2026-04-03T06:39:22,372           ############################
2026-04-03T06:39:22,372           Python recognizes 'pirlygenes.data' as an importable package[^1],
2026-04-03T06:39:22,373           but it is absent from setuptools' `packages` configuration.

2026-04-03T06:39:22,374           This leads to an ambiguous overall configuration. If you want to distribute this
2026-04-03T06:39:22,375           package, please make sure that 'pirlygenes.data' is explicitly added
2026-04-03T06:39:22,375           to the `packages` configuration field.

2026-04-03T06:39:22,376           Alternatively, you can also rely on setuptools' discovery methods
2026-04-03T06:39:22,377           (for example by using `find_namespace_packages(...)`/`find_namespace:`
2026-04-03T06:39:22,377           instead of `find_packages(...)`/`find:`).

2026-04-03T06:39:22,378           You can read more about "package discovery" on setuptools documentation page:

2026-04-03T06:39:22,379           - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html

2026-04-03T06:39:22,381           If you don't want 'pirlygenes.data' to be distributed and are
2026-04-03T06:39:22,382           already explicitly excluding 'pirlygenes.data' via
2026-04-03T06:39:22,382           `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
2026-04-03T06:39:22,383           you can try to use `exclude_package_data`, or `include-package-data=False` in
2026-04-03T06:39:22,383           combination with a more fine grained `package-data` configuration.

2026-04-03T06:39:22,384           You can read more about "package data files" on setuptools documentation page:

2026-04-03T06:39:22,385           - https://setuptools.pypa.io/en/latest/userguide/datafiles.html


2026-04-03T06:39:22,387           [^1]: For Python, any directory (with suitable naming) can be imported,
2026-04-03T06:39:22,388                 even if it does not contain any `.py` files.
2026-04-03T06:39:22,388                 On the other hand, currently there is no concept of package data
2026-04-03T06:39:22,389                 directory, all directories are treated like packages.
2026-04-03T06:39:22,389           ********************************************************************************

2026-04-03T06:39:22,391   !!
2026-04-03T06:39:22,391     check.warn(importable)
2026-04-03T06:39:22,392   copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes
2026-04-03T06:39:22,393   creating build/lib/pirlygenes/data
2026-04-03T06:39:22,393   copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,394   copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,394   copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,395   copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,396   copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,396   copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,397   copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,397   copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,400   copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,404   copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,406   copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,409   copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,411   copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data
2026-04-03T06:39:22,428   installing to build/bdist.linux-armv7l/wheel
2026-04-03T06:39:22,429   running install
2026-04-03T06:39:22,452   running install_lib
2026-04-03T06:39:22,460   creating build/bdist.linux-armv7l/wheel
2026-04-03T06:39:22,462   creating build/bdist.linux-armv7l/wheel/pirlygenes
2026-04-03T06:39:22,463   copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,465   copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,467   copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,469   copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,471   copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,473   creating build/bdist.linux-armv7l/wheel/pirlygenes/data
2026-04-03T06:39:22,474   copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,478   copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,481   copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,483   copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,485   copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,487   copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,489   copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,491   copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,494   copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,496   copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,498   copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,500   copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,503   copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data
2026-04-03T06:39:22,506   copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,508   copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,511   copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,513   copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,516   copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,518   copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,520   copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,522   copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,525   copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,527   copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes
2026-04-03T06:39:22,529   running install_egg_info
2026-04-03T06:39:22,537   Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-1.8.0-py3.11.egg-info
2026-04-03T06:39:22,550   running install_scripts
2026-04-03T06:39:22,563   creating build/bdist.linux-armv7l/wheel/pirlygenes-1.8.0.dist-info/WHEEL
2026-04-03T06:39:22,566   creating '/tmp/pip-wheel-7opxgr7g/.tmp-qkrj6h3e/pirlygenes-1.8.0-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it
2026-04-03T06:39:22,569   adding 'pirlygenes/PLAN-1.4.0-radioligand.md'
2026-04-03T06:39:22,571   adding 'pirlygenes/__init__.py'
2026-04-03T06:39:22,572   adding 'pirlygenes/aggregate_gene_expression.py'
2026-04-03T06:39:22,574   adding 'pirlygenes/cli.py'
2026-04-03T06:39:22,575   adding 'pirlygenes/common.py'
2026-04-03T06:39:22,577   adding 'pirlygenes/gene_ids.py'
2026-04-03T06:39:22,578   adding 'pirlygenes/gene_names.py'
2026-04-03T06:39:22,581   adding 'pirlygenes/gene_sets_cancer.py'
2026-04-03T06:39:22,582   adding 'pirlygenes/gene_sets_old.py'
2026-04-03T06:39:22,583   adding 'pirlygenes/load_dataset.py'
2026-04-03T06:39:22,585   adding 'pirlygenes/load_expression.py'
2026-04-03T06:39:22,587   adding 'pirlygenes/plot.py'
2026-04-03T06:39:22,589   adding 'pirlygenes/plot_data_helpers.py'
2026-04-03T06:39:22,590   adding 'pirlygenes/transcript_to_gene.py'
2026-04-03T06:39:22,592   adding 'pirlygenes/version.py'
2026-04-03T06:39:22,594   adding 'pirlygenes/data/ADC-approved.csv'
2026-04-03T06:39:22,597   adding 'pirlygenes/data/ADC-trials.csv'
2026-04-03T06:39:22,599   adding 'pirlygenes/data/ADC-withdrawn.csv'
2026-04-03T06:39:22,600   adding 'pirlygenes/data/CAR-T-approved.csv'
2026-04-03T06:39:22,603   adding 'pirlygenes/data/TCR-T-trials.csv'
2026-04-03T06:39:22,605   adding 'pirlygenes/data/bispecific-antibodies-approved.csv'
2026-04-03T06:39:22,610   adding 'pirlygenes/data/cancer-driver-genes.csv'
2026-04-03T06:39:22,613   adding 'pirlygenes/data/cancer-driver-variants.csv'
2026-04-03T06:39:22,619   adding 'pirlygenes/data/cancer-testis-antigens.csv'
2026-04-03T06:39:22,621   adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv'
2026-04-03T06:39:22,622   adding 'pirlygenes/data/interferon-response.csv'
2026-04-03T06:39:22,623   adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv'
2026-04-03T06:39:22,625   adding 'pirlygenes/data/radioligand-targets.csv'
2026-04-03T06:39:22,628   adding 'pirlygenes-1.8.0.dist-info/licenses/LICENSE'
2026-04-03T06:39:22,630   adding 'pirlygenes-1.8.0.dist-info/METADATA'
2026-04-03T06:39:22,631   adding 'pirlygenes-1.8.0.dist-info/WHEEL'
2026-04-03T06:39:22,632   adding 'pirlygenes-1.8.0.dist-info/entry_points.txt'
2026-04-03T06:39:22,633   adding 'pirlygenes-1.8.0.dist-info/top_level.txt'
2026-04-03T06:39:22,634   adding 'pirlygenes-1.8.0.dist-info/RECORD'
2026-04-03T06:39:22,637   removing build/bdist.linux-armv7l/wheel
2026-04-03T06:39:22,751   Building wheel for pirlygenes (pyproject.toml): finished with status 'done'
2026-04-03T06:39:22,758   Created wheel for pirlygenes: filename=pirlygenes-1.8.0-py3-none-any.whl size=88656 sha256=202a232caf63d7ad6c6d202e8d8c6c3f52bb57aa7bd124b14be89597a4637f02
2026-04-03T06:39:22,759   Stored in directory: /tmp/pip-ephem-wheel-cache-kpvddttk/wheels/8b/fc/96/112071f50d7c917982e9da0354cadef1ce703f331e1a7e917f
2026-04-03T06:39:22,772 Successfully built pirlygenes
2026-04-03T06:39:22,778 Removed build tracker: '/tmp/pip-build-tracker-5xggqbkx'