2026-04-03T06:39:37,818 Created temporary directory: /tmp/pip-ephem-wheel-cache-oiwelihj 2026-04-03T06:39:37,820 Created temporary directory: /tmp/pip-build-tracker-h34rkp7e 2026-04-03T06:39:37,821 Initialized build tracking at /tmp/pip-build-tracker-h34rkp7e 2026-04-03T06:39:37,821 Created build tracker: /tmp/pip-build-tracker-h34rkp7e 2026-04-03T06:39:37,822 Entered build tracker: /tmp/pip-build-tracker-h34rkp7e 2026-04-03T06:39:37,823 Created temporary directory: /tmp/pip-wheel-u2w849cx 2026-04-03T06:39:37,825 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T06:39:37,828 Created temporary directory: /tmp/pip-ephem-wheel-cache-f8hfafvg 2026-04-03T06:39:37,850 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T06:39:37,854 2 location(s) to search for versions of pirlygenes: 2026-04-03T06:39:37,854 * https://pypi.org/simple/pirlygenes/ 2026-04-03T06:39:37,854 * https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:39:37,854 Fetching project page and analyzing links: https://pypi.org/simple/pirlygenes/ 2026-04-03T06:39:37,855 Getting page https://pypi.org/simple/pirlygenes/ 2026-04-03T06:39:37,857 Found index url https://pypi.org/simple 2026-04-03T06:39:38,088 Fetched page https://pypi.org/simple/pirlygenes/ as application/vnd.pypi.simple.v1+json 2026-04-03T06:39:38,091 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/2e/66/a994711ece0c32dc4037b2c20acb069375f8eb2c80bdcca3a9efa47fdaee/pirlygenes-1.7.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:39:38,092 Found link https://files.pythonhosted.org/packages/17/fe/bcdacc3535105e4aed789ffd67937b0a725f5eaf16e19e2d70d7d9994985/pirlygenes-1.7.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.7.0 2026-04-03T06:39:38,092 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/59/b0/3e2df98a4c7e570e430d5a43b78c4325669dc94f670df919535730ad97e4/pirlygenes-1.8.0-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:39:38,093 Found link https://files.pythonhosted.org/packages/4b/7c/57808dd823cb43e0775fef54e28607a61d6e34549ef6c21f02e85567e13a/pirlygenes-1.8.0.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.0 2026-04-03T06:39:38,094 Skipping link: No binaries permitted for pirlygenes: https://files.pythonhosted.org/packages/9a/8d/f18f1d145c3cc415d28137493c5cb8e758516d9ac9633fc74cb4f86a318a/pirlygenes-1.8.1-py3-none-any.whl (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:39:38,095 Found link https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz (from https://pypi.org/simple/pirlygenes/) (requires-python:>=3.9), version: 1.8.1 2026-04-03T06:39:38,096 Fetching project page and analyzing links: https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:39:38,096 Getting page https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:39:38,097 Found index url https://www.piwheels.org/simple 2026-04-03T06:39:38,281 Fetched page https://www.piwheels.org/simple/pirlygenes/ as text/html 2026-04-03T06:39:38,282 Skipping link: No binaries permitted for pirlygenes: https://www.piwheels.org/simple/pirlygenes/pirlygenes-1.7.0-py3-none-any.whl#sha256=01a45cdf8948ae1d8a8034363ecd9357088d1df4c99ffb9370f8d68432ff4fa7 (from https://www.piwheels.org/simple/pirlygenes/) (requires-python:>=3.9) 2026-04-03T06:39:38,283 Skipping link: not a file: https://www.piwheels.org/simple/pirlygenes/ 2026-04-03T06:39:38,284 Skipping link: not a file: https://pypi.org/simple/pirlygenes/ 2026-04-03T06:39:38,303 Given no hashes to check 1 links for project 'pirlygenes': discarding no candidates 2026-04-03T06:39:38,321 Collecting pirlygenes==1.8.1 2026-04-03T06:39:38,323 Created temporary directory: /tmp/pip-unpack-vtt22n9n 2026-04-03T06:39:38,559 Downloading pirlygenes-1.8.1.tar.gz (666 kB) 2026-04-03T06:39:38,948 Added pirlygenes==1.8.1 from https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz to build tracker '/tmp/pip-build-tracker-h34rkp7e' 2026-04-03T06:39:38,954 Created temporary directory: /tmp/pip-build-env-eeb3hm42 2026-04-03T06:39:38,960 Installing build dependencies: started 2026-04-03T06:39:38,961 Running command pip subprocess to install build dependencies 2026-04-03T06:39:40,126 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-03T06:39:40,543 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T06:39:40,565 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T06:39:42,341 Collecting setuptools>=60 2026-04-03T06:39:42,466 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-03T06:39:42,854 Collecting setuptools-scm>=8.0 2026-04-03T06:39:42,871 Using cached https://www.piwheels.org/simple/setuptools-scm/setuptools_scm-10.0.5-py3-none-any.whl (21 kB) 2026-04-03T06:39:42,955 Collecting vcs-versioning>=1.0.0.dev0 2026-04-03T06:39:42,972 Using cached https://www.piwheels.org/simple/vcs-versioning/vcs_versioning-1.1.1-py3-none-any.whl (79 kB) 2026-04-03T06:39:43,148 Collecting packaging>=20 2026-04-03T06:39:43,164 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-03T06:39:46,181 Installing collected packages: setuptools, packaging, vcs-versioning, setuptools-scm 2026-04-03T06:39:49,890 Creating /tmp/pip-build-env-eeb3hm42/overlay/local/bin 2026-04-03T06:39:49,893 changing mode of /tmp/pip-build-env-eeb3hm42/overlay/local/bin/vcs-versioning to 755 2026-04-03T06:39:50,027 changing mode of /tmp/pip-build-env-eeb3hm42/overlay/local/bin/setuptools-scm to 755 2026-04-03T06:39:50,058 Successfully installed packaging-26.0 setuptools-82.0.1 setuptools-scm-10.0.5 vcs-versioning-1.1.1 2026-04-03T06:39:50,348 Installing build dependencies: finished with status 'done' 2026-04-03T06:39:50,364 Getting requirements to build wheel: started 2026-04-03T06:39:50,366 Running command Getting requirements to build wheel 2026-04-03T06:39:51,106 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:39:51,224 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:51,225 !! 2026-04-03T06:39:51,226 ******************************************************************************** 2026-04-03T06:39:51,227 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:51,228 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:51,229 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:51,229 ******************************************************************************** 2026-04-03T06:39:51,231 !! 2026-04-03T06:39:51,231 dist._finalize_license_expression() 2026-04-03T06:39:51,232 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:51,232 !! 2026-04-03T06:39:51,234 ******************************************************************************** 2026-04-03T06:39:51,234 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:51,235 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:51,236 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:51,237 ******************************************************************************** 2026-04-03T06:39:51,238 !! 2026-04-03T06:39:51,238 self._finalize_license_expression() 2026-04-03T06:39:51,241 running egg_info 2026-04-03T06:39:51,249 writing pirlygenes.egg-info/PKG-INFO 2026-04-03T06:39:51,253 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:39:51,255 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-03T06:39:51,256 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-03T06:39:51,258 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-03T06:39:51,301 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:39:51,302 return get_active_overrides().subprocess_timeout 2026-04-03T06:39:51,309 listing git files failed - pretending there aren't any 2026-04-03T06:39:51,319 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:51,327 adding license file 'LICENSE' 2026-04-03T06:39:51,332 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:51,436 Getting requirements to build wheel: finished with status 'done' 2026-04-03T06:39:51,440 Created temporary directory: /tmp/pip-modern-metadata-qj2exnaw 2026-04-03T06:39:51,442 Preparing metadata (pyproject.toml): started 2026-04-03T06:39:51,444 Running command Preparing metadata (pyproject.toml) 2026-04-03T06:39:52,117 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:39:52,227 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:52,228 !! 2026-04-03T06:39:52,229 ******************************************************************************** 2026-04-03T06:39:52,230 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:52,231 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:52,232 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:52,233 ******************************************************************************** 2026-04-03T06:39:52,234 !! 2026-04-03T06:39:52,235 dist._finalize_license_expression() 2026-04-03T06:39:52,235 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:52,236 !! 2026-04-03T06:39:52,237 ******************************************************************************** 2026-04-03T06:39:52,238 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:52,239 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:52,240 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:52,241 ******************************************************************************** 2026-04-03T06:39:52,242 !! 2026-04-03T06:39:52,242 self._finalize_license_expression() 2026-04-03T06:39:52,243 running dist_info 2026-04-03T06:39:52,257 creating /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info 2026-04-03T06:39:52,258 writing /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/PKG-INFO 2026-04-03T06:39:52,262 writing dependency_links to /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:39:52,264 writing entry points to /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/entry_points.txt 2026-04-03T06:39:52,266 writing requirements to /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/requires.txt 2026-04-03T06:39:52,267 writing top-level names to /tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/top_level.txt 2026-04-03T06:39:52,268 writing manifest file '/tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:52,306 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:39:52,307 return get_active_overrides().subprocess_timeout 2026-04-03T06:39:52,313 listing git files failed - pretending there aren't any 2026-04-03T06:39:52,322 reading manifest file '/tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:52,324 adding license file 'LICENSE' 2026-04-03T06:39:52,328 writing manifest file '/tmp/pip-modern-metadata-qj2exnaw/pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:52,329 creating '/tmp/pip-modern-metadata-qj2exnaw/pirlygenes-1.8.1.dist-info' 2026-04-03T06:39:52,466 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-03T06:39:52,472 Source in /tmp/pip-wheel-u2w849cx/pirlygenes_8f2ee5d0bc314cf7a2a011b5d831be01 has version 1.8.1, which satisfies requirement pirlygenes==1.8.1 from https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz 2026-04-03T06:39:52,473 Removed pirlygenes==1.8.1 from https://files.pythonhosted.org/packages/61/0c/c3f0aff27c3758ba3f3ee1f4a63a05238e02043251af230032d9ba555624/pirlygenes-1.8.1.tar.gz from build tracker '/tmp/pip-build-tracker-h34rkp7e' 2026-04-03T06:39:52,479 Created temporary directory: /tmp/pip-unpack-weuxuzgg 2026-04-03T06:39:52,480 Building wheels for collected packages: pirlygenes 2026-04-03T06:39:52,485 Created temporary directory: /tmp/pip-wheel-_se4iryt 2026-04-03T06:39:52,486 Destination directory: /tmp/pip-wheel-_se4iryt 2026-04-03T06:39:52,488 Building wheel for pirlygenes (pyproject.toml): started 2026-04-03T06:39:52,490 Running command Building wheel for pirlygenes (pyproject.toml) 2026-04-03T06:39:53,119 toml section missing PosixPath('pyproject.toml') does not contain any of the tool sections: ['setuptools_scm', 'vcs-versioning'] 2026-04-03T06:39:53,218 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:53,219 !! 2026-04-03T06:39:53,220 ******************************************************************************** 2026-04-03T06:39:53,221 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:53,222 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:53,223 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:53,224 ******************************************************************************** 2026-04-03T06:39:53,225 !! 2026-04-03T06:39:53,226 dist._finalize_license_expression() 2026-04-03T06:39:53,226 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T06:39:53,227 !! 2026-04-03T06:39:53,228 ******************************************************************************** 2026-04-03T06:39:53,229 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T06:39:53,230 License :: OSI Approved :: Apache Software License 2026-04-03T06:39:53,231 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T06:39:53,231 ******************************************************************************** 2026-04-03T06:39:53,232 !! 2026-04-03T06:39:53,233 self._finalize_license_expression() 2026-04-03T06:39:53,234 running bdist_wheel 2026-04-03T06:39:53,253 running build 2026-04-03T06:39:53,254 running build_py 2026-04-03T06:39:53,255 creating build/lib/pirlygenes 2026-04-03T06:39:53,258 copying pirlygenes/gene_sets_old.py -> build/lib/pirlygenes 2026-04-03T06:39:53,260 copying pirlygenes/gene_ids.py -> build/lib/pirlygenes 2026-04-03T06:39:53,263 copying pirlygenes/plot_data_helpers.py -> build/lib/pirlygenes 2026-04-03T06:39:53,265 copying pirlygenes/__init__.py -> build/lib/pirlygenes 2026-04-03T06:39:53,267 copying pirlygenes/aggregate_gene_expression.py -> build/lib/pirlygenes 2026-04-03T06:39:53,270 copying pirlygenes/version.py -> build/lib/pirlygenes 2026-04-03T06:39:53,272 copying pirlygenes/load_dataset.py -> build/lib/pirlygenes 2026-04-03T06:39:53,274 copying pirlygenes/gene_names.py -> build/lib/pirlygenes 2026-04-03T06:39:53,276 copying pirlygenes/transcript_to_gene.py -> build/lib/pirlygenes 2026-04-03T06:39:53,278 copying pirlygenes/plot.py -> build/lib/pirlygenes 2026-04-03T06:39:53,281 copying pirlygenes/common.py -> build/lib/pirlygenes 2026-04-03T06:39:53,283 copying pirlygenes/gene_sets_cancer.py -> build/lib/pirlygenes 2026-04-03T06:39:53,286 copying pirlygenes/cli.py -> build/lib/pirlygenes 2026-04-03T06:39:53,288 copying pirlygenes/load_expression.py -> build/lib/pirlygenes 2026-04-03T06:39:53,290 running egg_info 2026-04-03T06:39:53,305 writing pirlygenes.egg-info/PKG-INFO 2026-04-03T06:39:53,309 writing dependency_links to pirlygenes.egg-info/dependency_links.txt 2026-04-03T06:39:53,311 writing entry points to pirlygenes.egg-info/entry_points.txt 2026-04-03T06:39:53,312 writing requirements to pirlygenes.egg-info/requires.txt 2026-04-03T06:39:53,313 writing top-level names to pirlygenes.egg-info/top_level.txt 2026-04-03T06:39:53,343 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/vcs_versioning/overrides.py:609: UserWarning: No GlobalOverrides context is active. Auto-creating one with SETUPTOOLS_SCM prefix for backwards compatibility. Consider using 'with GlobalOverrides.from_env("YOUR_TOOL"):' explicitly. 2026-04-03T06:39:53,344 return get_active_overrides().subprocess_timeout 2026-04-03T06:39:53,351 listing git files failed - pretending there aren't any 2026-04-03T06:39:53,358 reading manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:53,363 adding license file 'LICENSE' 2026-04-03T06:39:53,368 writing manifest file 'pirlygenes.egg-info/SOURCES.txt' 2026-04-03T06:39:53,371 /tmp/pip-build-env-eeb3hm42/overlay/local/lib/python3.11/dist-packages/setuptools/command/build_py.py:215: _Warning: Package 'pirlygenes.data' is absent from the `packages` configuration. 2026-04-03T06:39:53,371 !! 2026-04-03T06:39:53,373 ******************************************************************************** 2026-04-03T06:39:53,373 ############################ 2026-04-03T06:39:53,374 # Package would be ignored # 2026-04-03T06:39:53,374 ############################ 2026-04-03T06:39:53,375 Python recognizes 'pirlygenes.data' as an importable package[^1], 2026-04-03T06:39:53,375 but it is absent from setuptools' `packages` configuration. 2026-04-03T06:39:53,377 This leads to an ambiguous overall configuration. If you want to distribute this 2026-04-03T06:39:53,377 package, please make sure that 'pirlygenes.data' is explicitly added 2026-04-03T06:39:53,378 to the `packages` configuration field. 2026-04-03T06:39:53,379 Alternatively, you can also rely on setuptools' discovery methods 2026-04-03T06:39:53,379 (for example by using `find_namespace_packages(...)`/`find_namespace:` 2026-04-03T06:39:53,379 instead of `find_packages(...)`/`find:`). 2026-04-03T06:39:53,380 You can read more about "package discovery" on setuptools documentation page: 2026-04-03T06:39:53,381 - https://setuptools.pypa.io/en/latest/userguide/package_discovery.html 2026-04-03T06:39:53,383 If you don't want 'pirlygenes.data' to be distributed and are 2026-04-03T06:39:53,383 already explicitly excluding 'pirlygenes.data' via 2026-04-03T06:39:53,384 `find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`, 2026-04-03T06:39:53,384 you can try to use `exclude_package_data`, or `include-package-data=False` in 2026-04-03T06:39:53,385 combination with a more fine grained `package-data` configuration. 2026-04-03T06:39:53,386 You can read more about "package data files" on setuptools documentation page: 2026-04-03T06:39:53,387 - https://setuptools.pypa.io/en/latest/userguide/datafiles.html 2026-04-03T06:39:53,388 [^1]: For Python, any directory (with suitable naming) can be imported, 2026-04-03T06:39:53,389 even if it does not contain any `.py` files. 2026-04-03T06:39:53,389 On the other hand, currently there is no concept of package data 2026-04-03T06:39:53,390 directory, all directories are treated like packages. 2026-04-03T06:39:53,390 ******************************************************************************** 2026-04-03T06:39:53,391 !! 2026-04-03T06:39:53,392 check.warn(importable) 2026-04-03T06:39:53,392 copying pirlygenes/PLAN-1.4.0-radioligand.md -> build/lib/pirlygenes 2026-04-03T06:39:53,393 creating build/lib/pirlygenes/data 2026-04-03T06:39:53,394 copying pirlygenes/data/ADC-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,394 copying pirlygenes/data/ADC-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,395 copying pirlygenes/data/ADC-withdrawn.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,395 copying pirlygenes/data/CAR-T-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,396 copying pirlygenes/data/TCR-T-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,396 copying pirlygenes/data/bispecific-antibodies-approved.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,397 copying pirlygenes/data/cancer-driver-genes.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,400 copying pirlygenes/data/cancer-driver-variants.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,404 copying pirlygenes/data/cancer-testis-antigens.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,408 copying pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,411 copying pirlygenes/data/interferon-response.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,413 copying pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,416 copying pirlygenes/data/radioligand-targets.csv -> build/lib/pirlygenes/data 2026-04-03T06:39:53,433 installing to build/bdist.linux-armv7l/wheel 2026-04-03T06:39:53,434 running install 2026-04-03T06:39:53,458 running install_lib 2026-04-03T06:39:53,466 creating build/bdist.linux-armv7l/wheel 2026-04-03T06:39:53,469 creating build/bdist.linux-armv7l/wheel/pirlygenes 2026-04-03T06:39:53,470 copying build/lib/pirlygenes/gene_sets_old.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,472 copying build/lib/pirlygenes/gene_ids.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,475 copying build/lib/pirlygenes/plot_data_helpers.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,480 copying build/lib/pirlygenes/__init__.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,482 copying build/lib/pirlygenes/aggregate_gene_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,484 copying build/lib/pirlygenes/PLAN-1.4.0-radioligand.md -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,486 copying build/lib/pirlygenes/version.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,488 copying build/lib/pirlygenes/load_dataset.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,491 copying build/lib/pirlygenes/gene_names.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,493 copying build/lib/pirlygenes/transcript_to_gene.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,495 copying build/lib/pirlygenes/plot.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,499 creating build/bdist.linux-armv7l/wheel/pirlygenes/data 2026-04-03T06:39:53,500 copying build/lib/pirlygenes/data/class1-mhc-presentation-pathway.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,502 copying build/lib/pirlygenes/data/ADC-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,505 copying build/lib/pirlygenes/data/cancer-driver-genes.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,509 copying build/lib/pirlygenes/data/ADC-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,511 copying build/lib/pirlygenes/data/bispecific-antibodies-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,513 copying build/lib/pirlygenes/data/radioligand-targets.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,516 copying build/lib/pirlygenes/data/CAR-T-approved.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,518 copying build/lib/pirlygenes/data/interferon-response.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,520 copying build/lib/pirlygenes/data/cancer-driver-variants.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,523 copying build/lib/pirlygenes/data/TCR-T-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,525 copying build/lib/pirlygenes/data/cancer-testis-antigens.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,529 copying build/lib/pirlygenes/data/ADC-withdrawn.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,531 copying build/lib/pirlygenes/data/multispecific-tcell-engager-trials.csv -> build/bdist.linux-armv7l/wheel/./pirlygenes/data 2026-04-03T06:39:53,533 copying build/lib/pirlygenes/common.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,535 copying build/lib/pirlygenes/gene_sets_cancer.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,538 copying build/lib/pirlygenes/cli.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,540 copying build/lib/pirlygenes/load_expression.py -> build/bdist.linux-armv7l/wheel/./pirlygenes 2026-04-03T06:39:53,542 running install_egg_info 2026-04-03T06:39:53,550 Copying pirlygenes.egg-info to build/bdist.linux-armv7l/wheel/./pirlygenes-1.8.1-py3.11.egg-info 2026-04-03T06:39:53,562 running install_scripts 2026-04-03T06:39:53,577 creating build/bdist.linux-armv7l/wheel/pirlygenes-1.8.1.dist-info/WHEEL 2026-04-03T06:39:53,580 creating '/tmp/pip-wheel-_se4iryt/.tmp-uoicozed/pirlygenes-1.8.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-03T06:39:53,583 adding 'pirlygenes/PLAN-1.4.0-radioligand.md' 2026-04-03T06:39:53,584 adding 'pirlygenes/__init__.py' 2026-04-03T06:39:53,586 adding 'pirlygenes/aggregate_gene_expression.py' 2026-04-03T06:39:53,588 adding 'pirlygenes/cli.py' 2026-04-03T06:39:53,589 adding 'pirlygenes/common.py' 2026-04-03T06:39:53,591 adding 'pirlygenes/gene_ids.py' 2026-04-03T06:39:53,592 adding 'pirlygenes/gene_names.py' 2026-04-03T06:39:53,595 adding 'pirlygenes/gene_sets_cancer.py' 2026-04-03T06:39:53,596 adding 'pirlygenes/gene_sets_old.py' 2026-04-03T06:39:53,597 adding 'pirlygenes/load_dataset.py' 2026-04-03T06:39:53,599 adding 'pirlygenes/load_expression.py' 2026-04-03T06:39:53,601 adding 'pirlygenes/plot.py' 2026-04-03T06:39:53,603 adding 'pirlygenes/plot_data_helpers.py' 2026-04-03T06:39:53,605 adding 'pirlygenes/transcript_to_gene.py' 2026-04-03T06:39:53,606 adding 'pirlygenes/version.py' 2026-04-03T06:39:53,608 adding 'pirlygenes/data/ADC-approved.csv' 2026-04-03T06:39:53,612 adding 'pirlygenes/data/ADC-trials.csv' 2026-04-03T06:39:53,613 adding 'pirlygenes/data/ADC-withdrawn.csv' 2026-04-03T06:39:53,615 adding 'pirlygenes/data/CAR-T-approved.csv' 2026-04-03T06:39:53,618 adding 'pirlygenes/data/TCR-T-trials.csv' 2026-04-03T06:39:53,620 adding 'pirlygenes/data/bispecific-antibodies-approved.csv' 2026-04-03T06:39:53,625 adding 'pirlygenes/data/cancer-driver-genes.csv' 2026-04-03T06:39:53,627 adding 'pirlygenes/data/cancer-driver-variants.csv' 2026-04-03T06:39:53,633 adding 'pirlygenes/data/cancer-testis-antigens.csv' 2026-04-03T06:39:53,635 adding 'pirlygenes/data/class1-mhc-presentation-pathway.csv' 2026-04-03T06:39:53,636 adding 'pirlygenes/data/interferon-response.csv' 2026-04-03T06:39:53,638 adding 'pirlygenes/data/multispecific-tcell-engager-trials.csv' 2026-04-03T06:39:53,639 adding 'pirlygenes/data/radioligand-targets.csv' 2026-04-03T06:39:53,643 adding 'pirlygenes-1.8.1.dist-info/licenses/LICENSE' 2026-04-03T06:39:53,645 adding 'pirlygenes-1.8.1.dist-info/METADATA' 2026-04-03T06:39:53,647 adding 'pirlygenes-1.8.1.dist-info/WHEEL' 2026-04-03T06:39:53,647 adding 'pirlygenes-1.8.1.dist-info/entry_points.txt' 2026-04-03T06:39:53,648 adding 'pirlygenes-1.8.1.dist-info/top_level.txt' 2026-04-03T06:39:53,649 adding 'pirlygenes-1.8.1.dist-info/RECORD' 2026-04-03T06:39:53,652 removing build/bdist.linux-armv7l/wheel 2026-04-03T06:39:53,768 Building wheel for pirlygenes (pyproject.toml): finished with status 'done' 2026-04-03T06:39:53,774 Created wheel for pirlygenes: filename=pirlygenes-1.8.1-py3-none-any.whl size=88669 sha256=35f8427ceac3714bb6339609b7f3602ea81ea8b5642c4e760931e9a28263a28b 2026-04-03T06:39:53,776 Stored in directory: /tmp/pip-ephem-wheel-cache-f8hfafvg/wheels/f3/68/cc/18c0967330da51637fe79d4cde0b38b3c2f67940e2f3d45847 2026-04-03T06:39:53,789 Successfully built pirlygenes 2026-04-03T06:39:53,795 Removed build tracker: '/tmp/pip-build-tracker-h34rkp7e'