2026-04-03T13:31:59,742 Created temporary directory: /tmp/pip-ephem-wheel-cache-upwn1cta 2026-04-03T13:31:59,744 Created temporary directory: /tmp/pip-build-tracker-k0o0yqd8 2026-04-03T13:31:59,744 Initialized build tracking at /tmp/pip-build-tracker-k0o0yqd8 2026-04-03T13:31:59,745 Created build tracker: /tmp/pip-build-tracker-k0o0yqd8 2026-04-03T13:31:59,745 Entered build tracker: /tmp/pip-build-tracker-k0o0yqd8 2026-04-03T13:31:59,746 Created temporary directory: /tmp/pip-wheel-77f1ifcx 2026-04-03T13:31:59,749 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T13:31:59,752 Created temporary directory: /tmp/pip-ephem-wheel-cache-nm3mzwrb 2026-04-03T13:31:59,777 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T13:31:59,780 2 location(s) to search for versions of bfflearn: 2026-04-03T13:31:59,780 * https://pypi.org/simple/bfflearn/ 2026-04-03T13:31:59,780 * https://www.piwheels.org/simple/bfflearn/ 2026-04-03T13:31:59,781 Fetching project page and analyzing links: https://pypi.org/simple/bfflearn/ 2026-04-03T13:31:59,782 Getting page https://pypi.org/simple/bfflearn/ 2026-04-03T13:31:59,783 Found index url https://pypi.org/simple 2026-04-03T13:31:59,932 Fetched page https://pypi.org/simple/bfflearn/ as application/vnd.pypi.simple.v1+json 2026-04-03T13:31:59,934 Skipping link: No binaries permitted for bfflearn: https://files.pythonhosted.org/packages/c9/a0/de206c7bd12a418faed2ccac346a88777330895500b237997ffae9745cd9/bfflearn-0.1.0.dev1-py3-none-any.whl (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T13:31:59,935 Found link https://files.pythonhosted.org/packages/2d/dc/7fa40dd85a96eaf06e40e2e006a7ad38eef9af3db5aa96cb898af9a4a819/bfflearn-0.1.0.dev1.tar.gz (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10), version: 0.1.0.dev1 2026-04-03T13:31:59,936 Skipping link: No binaries permitted for bfflearn: https://files.pythonhosted.org/packages/0b/4f/b04fdc7d5f7fe37680dabaf446627c09a900dd22bcba5c3c18ee5860e4e0/bfflearn-0.1.0.dev2-py3-none-any.whl (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T13:31:59,937 Found link https://files.pythonhosted.org/packages/b8/83/41562445f0ae697f2f977e51962100a0fe66ef78d9ba8c36fe2073fd0fe0/bfflearn-0.1.0.dev2.tar.gz (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10), version: 0.1.0.dev2 2026-04-03T13:31:59,938 Fetching project page and analyzing links: https://www.piwheels.org/simple/bfflearn/ 2026-04-03T13:31:59,938 Getting page https://www.piwheels.org/simple/bfflearn/ 2026-04-03T13:31:59,939 Found index url https://www.piwheels.org/simple 2026-04-03T13:32:00,113 Fetched page https://www.piwheels.org/simple/bfflearn/ as text/html 2026-04-03T13:32:00,114 Skipping link: No binaries permitted for bfflearn: https://www.piwheels.org/simple/bfflearn/bfflearn-0.1.0.dev1-py3-none-any.whl#sha256=14318910e0c514ef151ee1390daef037d21efe3e1c6c539ae71244cfdfdeb5e9 (from https://www.piwheels.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T13:32:00,115 Skipping link: not a file: https://www.piwheels.org/simple/bfflearn/ 2026-04-03T13:32:00,116 Skipping link: not a file: https://pypi.org/simple/bfflearn/ 2026-04-03T13:32:00,134 Given no hashes to check 1 links for project 'bfflearn': discarding no candidates 2026-04-03T13:32:00,152 Collecting bfflearn==0.1.0.dev2 2026-04-03T13:32:00,154 Created temporary directory: /tmp/pip-unpack-buo_bv6h 2026-04-03T13:32:00,384 Downloading bfflearn-0.1.0.dev2.tar.gz (130 kB) 2026-04-03T13:32:00,601 Added bfflearn==0.1.0.dev2 from https://files.pythonhosted.org/packages/b8/83/41562445f0ae697f2f977e51962100a0fe66ef78d9ba8c36fe2073fd0fe0/bfflearn-0.1.0.dev2.tar.gz to build tracker '/tmp/pip-build-tracker-k0o0yqd8' 2026-04-03T13:32:00,608 Created temporary directory: /tmp/pip-build-env-c_9kh4bl 2026-04-03T13:32:00,613 Installing build dependencies: started 2026-04-03T13:32:00,614 Running command pip subprocess to install build dependencies 2026-04-03T13:32:01,773 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-03T13:32:02,261 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T13:32:02,285 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T13:32:04,038 Collecting setuptools>=61 2026-04-03T13:32:04,125 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-03T13:32:04,386 Collecting wheel 2026-04-03T13:32:04,402 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-03T13:32:04,789 Collecting pip 2026-04-03T13:32:04,951 Using cached https://www.piwheels.org/simple/pip/pip-26.0.1-py3-none-any.whl (1.8 MB) 2026-04-03T13:32:05,188 Collecting packaging>=24.0 2026-04-03T13:32:05,204 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-03T13:32:08,177 Installing collected packages: setuptools, pip, packaging, wheel 2026-04-03T13:32:15,468 Creating /tmp/pip-build-env-c_9kh4bl/overlay/local/bin 2026-04-03T13:32:15,470 changing mode of /tmp/pip-build-env-c_9kh4bl/overlay/local/bin/pip to 755 2026-04-03T13:32:15,473 changing mode of /tmp/pip-build-env-c_9kh4bl/overlay/local/bin/pip3 to 755 2026-04-03T13:32:15,475 changing mode of /tmp/pip-build-env-c_9kh4bl/overlay/local/bin/pip3.11 to 755 2026-04-03T13:32:15,861 changing mode of /tmp/pip-build-env-c_9kh4bl/overlay/local/bin/wheel to 755 2026-04-03T13:32:15,887 Successfully installed packaging-26.0 pip-26.0.1 setuptools-82.0.1 wheel-0.46.3 2026-04-03T13:32:16,174 Installing build dependencies: finished with status 'done' 2026-04-03T13:32:16,181 Getting requirements to build wheel: started 2026-04-03T13:32:16,182 Running command Getting requirements to build wheel 2026-04-03T13:32:16,831 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T13:32:16,832 !! 2026-04-03T13:32:16,833 ******************************************************************************** 2026-04-03T13:32:16,833 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T13:32:16,834 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T13:32:16,835 or your builds will no longer be supported. 2026-04-03T13:32:16,836 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:16,837 ******************************************************************************** 2026-04-03T13:32:16,838 !! 2026-04-03T13:32:16,838 corresp(dist, value, root_dir) 2026-04-03T13:32:16,914 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:16,915 !! 2026-04-03T13:32:16,916 ******************************************************************************** 2026-04-03T13:32:16,917 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:16,918 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:16,919 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:16,919 ******************************************************************************** 2026-04-03T13:32:16,920 !! 2026-04-03T13:32:16,921 dist._finalize_license_expression() 2026-04-03T13:32:16,921 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:16,922 !! 2026-04-03T13:32:16,923 ******************************************************************************** 2026-04-03T13:32:16,923 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:16,924 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:16,925 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:16,925 ******************************************************************************** 2026-04-03T13:32:16,926 !! 2026-04-03T13:32:16,927 self._finalize_license_expression() 2026-04-03T13:32:16,928 running egg_info 2026-04-03T13:32:16,935 writing bfflearn.egg-info/PKG-INFO 2026-04-03T13:32:16,942 writing dependency_links to bfflearn.egg-info/dependency_links.txt 2026-04-03T13:32:16,944 writing entry points to bfflearn.egg-info/entry_points.txt 2026-04-03T13:32:16,947 writing requirements to bfflearn.egg-info/requires.txt 2026-04-03T13:32:16,948 writing top-level names to bfflearn.egg-info/top_level.txt 2026-04-03T13:32:16,976 reading manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:16,980 adding license file 'LICENSE' 2026-04-03T13:32:16,985 writing manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:17,081 Getting requirements to build wheel: finished with status 'done' 2026-04-03T13:32:17,085 Created temporary directory: /tmp/pip-modern-metadata-rjcjr_4s 2026-04-03T13:32:17,087 Preparing metadata (pyproject.toml): started 2026-04-03T13:32:17,088 Running command Preparing metadata (pyproject.toml) 2026-04-03T13:32:17,666 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T13:32:17,666 !! 2026-04-03T13:32:17,668 ******************************************************************************** 2026-04-03T13:32:17,668 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T13:32:17,670 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T13:32:17,670 or your builds will no longer be supported. 2026-04-03T13:32:17,671 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:17,672 ******************************************************************************** 2026-04-03T13:32:17,673 !! 2026-04-03T13:32:17,674 corresp(dist, value, root_dir) 2026-04-03T13:32:17,745 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:17,746 !! 2026-04-03T13:32:17,747 ******************************************************************************** 2026-04-03T13:32:17,748 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:17,749 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:17,750 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:17,751 ******************************************************************************** 2026-04-03T13:32:17,752 !! 2026-04-03T13:32:17,753 dist._finalize_license_expression() 2026-04-03T13:32:17,753 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:17,754 !! 2026-04-03T13:32:17,755 ******************************************************************************** 2026-04-03T13:32:17,755 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:17,756 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:17,757 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:17,758 ******************************************************************************** 2026-04-03T13:32:17,759 !! 2026-04-03T13:32:17,759 self._finalize_license_expression() 2026-04-03T13:32:17,760 running dist_info 2026-04-03T13:32:17,769 creating /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info 2026-04-03T13:32:17,770 writing /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/PKG-INFO 2026-04-03T13:32:17,778 writing dependency_links to /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/dependency_links.txt 2026-04-03T13:32:17,780 writing entry points to /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/entry_points.txt 2026-04-03T13:32:17,783 writing requirements to /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/requires.txt 2026-04-03T13:32:17,784 writing top-level names to /tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/top_level.txt 2026-04-03T13:32:17,785 writing manifest file '/tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:17,810 reading manifest file '/tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:17,812 adding license file 'LICENSE' 2026-04-03T13:32:17,816 writing manifest file '/tmp/pip-modern-metadata-rjcjr_4s/bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:17,817 creating '/tmp/pip-modern-metadata-rjcjr_4s/bfflearn-0.1.0.dev2.dist-info' 2026-04-03T13:32:17,946 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-03T13:32:17,959 Source in /tmp/pip-wheel-77f1ifcx/bfflearn_e998aaafcdc9497898c5116cf77ab2cb has version 0.1.0.dev2, which satisfies requirement bfflearn==0.1.0.dev2 from https://files.pythonhosted.org/packages/b8/83/41562445f0ae697f2f977e51962100a0fe66ef78d9ba8c36fe2073fd0fe0/bfflearn-0.1.0.dev2.tar.gz 2026-04-03T13:32:17,960 Removed bfflearn==0.1.0.dev2 from https://files.pythonhosted.org/packages/b8/83/41562445f0ae697f2f977e51962100a0fe66ef78d9ba8c36fe2073fd0fe0/bfflearn-0.1.0.dev2.tar.gz from build tracker '/tmp/pip-build-tracker-k0o0yqd8' 2026-04-03T13:32:17,980 Created temporary directory: /tmp/pip-unpack-us605gqv 2026-04-03T13:32:17,981 Building wheels for collected packages: bfflearn 2026-04-03T13:32:17,986 Created temporary directory: /tmp/pip-wheel-ba98mdu7 2026-04-03T13:32:17,987 Destination directory: /tmp/pip-wheel-ba98mdu7 2026-04-03T13:32:17,989 Building wheel for bfflearn (pyproject.toml): started 2026-04-03T13:32:17,990 Running command Building wheel for bfflearn (pyproject.toml) 2026-04-03T13:32:18,562 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T13:32:18,562 !! 2026-04-03T13:32:18,564 ******************************************************************************** 2026-04-03T13:32:18,564 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T13:32:18,565 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T13:32:18,566 or your builds will no longer be supported. 2026-04-03T13:32:18,567 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:18,567 ******************************************************************************** 2026-04-03T13:32:18,568 !! 2026-04-03T13:32:18,569 corresp(dist, value, root_dir) 2026-04-03T13:32:18,634 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:18,634 !! 2026-04-03T13:32:18,635 ******************************************************************************** 2026-04-03T13:32:18,636 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:18,637 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:18,638 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:18,638 ******************************************************************************** 2026-04-03T13:32:18,640 !! 2026-04-03T13:32:18,640 dist._finalize_license_expression() 2026-04-03T13:32:18,641 /tmp/pip-build-env-c_9kh4bl/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T13:32:18,641 !! 2026-04-03T13:32:18,642 ******************************************************************************** 2026-04-03T13:32:18,643 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T13:32:18,644 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T13:32:18,645 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T13:32:18,645 ******************************************************************************** 2026-04-03T13:32:18,647 !! 2026-04-03T13:32:18,647 self._finalize_license_expression() 2026-04-03T13:32:18,648 running bdist_wheel 2026-04-03T13:32:18,662 running build 2026-04-03T13:32:18,662 running build_py 2026-04-03T13:32:18,669 creating build/lib/bff 2026-04-03T13:32:18,671 copying bff/data.py -> build/lib/bff 2026-04-03T13:32:18,673 copying bff/tools.py -> build/lib/bff 2026-04-03T13:32:18,676 copying bff/cli.py -> build/lib/bff 2026-04-03T13:32:18,678 copying bff/plotting.py -> build/lib/bff 2026-04-03T13:32:18,680 copying bff/topology.py -> build/lib/bff 2026-04-03T13:32:18,683 copying bff/__init__.py -> build/lib/bff 2026-04-03T13:32:18,685 creating build/lib/bff/mcmc 2026-04-03T13:32:18,686 copying bff/mcmc/sampler.py -> build/lib/bff/mcmc 2026-04-03T13:32:18,689 copying bff/mcmc/proposal.py -> build/lib/bff/mcmc 2026-04-03T13:32:18,691 copying bff/mcmc/__init__.py -> build/lib/bff/mcmc 2026-04-03T13:32:18,693 copying bff/mcmc/convergence.py -> build/lib/bff/mcmc 2026-04-03T13:32:18,696 creating build/lib/bff/io 2026-04-03T13:32:18,697 copying bff/io/schedulers.py -> build/lib/bff/io 2026-04-03T13:32:18,699 copying bff/io/cp2k.py -> build/lib/bff/io 2026-04-03T13:32:18,702 copying bff/io/plumed.py -> build/lib/bff/io 2026-04-03T13:32:18,704 copying bff/io/commands.py -> build/lib/bff/io 2026-04-03T13:32:18,706 copying bff/io/logs.py -> build/lib/bff/io 2026-04-03T13:32:18,708 copying bff/io/colvars.py -> build/lib/bff/io 2026-04-03T13:32:18,711 copying bff/io/utils.py -> build/lib/bff/io 2026-04-03T13:32:18,715 copying bff/io/progress.py -> build/lib/bff/io 2026-04-03T13:32:18,717 copying bff/io/mdp.py -> build/lib/bff/io 2026-04-03T13:32:18,719 copying bff/io/__init__.py -> build/lib/bff/io 2026-04-03T13:32:18,721 creating build/lib/bff/domain 2026-04-03T13:32:18,722 copying bff/domain/specs.py -> build/lib/bff/domain 2026-04-03T13:32:18,725 copying bff/domain/bias.py -> build/lib/bff/domain 2026-04-03T13:32:18,727 copying bff/domain/trainset.py -> build/lib/bff/domain 2026-04-03T13:32:18,729 copying bff/domain/__init__.py -> build/lib/bff/domain 2026-04-03T13:32:18,731 creating build/lib/bff/qoi 2026-04-03T13:32:18,732 copying bff/qoi/hbonds.py -> build/lib/bff/qoi 2026-04-03T13:32:18,735 copying bff/qoi/data.py -> build/lib/bff/qoi 2026-04-03T13:32:18,737 copying bff/qoi/rdf.py -> build/lib/bff/qoi 2026-04-03T13:32:18,739 copying bff/qoi/analysis.py -> build/lib/bff/qoi 2026-04-03T13:32:18,741 copying bff/qoi/__init__.py -> build/lib/bff/qoi 2026-04-03T13:32:18,742 copying bff/qoi/routines.py -> build/lib/bff/qoi 2026-04-03T13:32:18,745 creating build/lib/bff/bayes 2026-04-03T13:32:18,746 copying bff/bayes/likelihoods.py -> build/lib/bff/bayes 2026-04-03T13:32:18,748 copying bff/bayes/gaussian_process.py -> build/lib/bff/bayes 2026-04-03T13:32:18,750 copying bff/bayes/learning.py -> build/lib/bff/bayes 2026-04-03T13:32:18,753 copying bff/bayes/results.py -> build/lib/bff/bayes 2026-04-03T13:32:18,756 copying bff/bayes/kernels.py -> build/lib/bff/bayes 2026-04-03T13:32:18,758 copying bff/bayes/utils.py -> build/lib/bff/bayes 2026-04-03T13:32:18,761 copying bff/bayes/posterior.py -> build/lib/bff/bayes 2026-04-03T13:32:18,763 copying bff/bayes/__init__.py -> build/lib/bff/bayes 2026-04-03T13:32:18,765 copying bff/bayes/priors.py -> build/lib/bff/bayes 2026-04-03T13:32:18,768 creating build/lib/bff/workflows 2026-04-03T13:32:18,769 copying bff/workflows/simulate.py -> build/lib/bff/workflows 2026-04-03T13:32:18,771 copying bff/workflows/configs.py -> build/lib/bff/workflows 2026-04-03T13:32:18,774 copying bff/workflows/learn.py -> build/lib/bff/workflows 2026-04-03T13:32:18,776 copying bff/workflows/md.py -> build/lib/bff/workflows 2026-04-03T13:32:18,779 copying bff/workflows/train.py -> build/lib/bff/workflows 2026-04-03T13:32:18,781 copying bff/workflows/validate.py -> build/lib/bff/workflows 2026-04-03T13:32:18,783 copying bff/workflows/examples.py -> build/lib/bff/workflows 2026-04-03T13:32:18,786 copying bff/workflows/prepare.py -> build/lib/bff/workflows 2026-04-03T13:32:18,788 copying bff/workflows/runsims.py -> build/lib/bff/workflows 2026-04-03T13:32:18,791 copying bff/workflows/qoi.py -> build/lib/bff/workflows 2026-04-03T13:32:18,794 copying bff/workflows/__init__.py -> build/lib/bff/workflows 2026-04-03T13:32:18,795 running egg_info 2026-04-03T13:32:18,807 writing bfflearn.egg-info/PKG-INFO 2026-04-03T13:32:18,815 writing dependency_links to bfflearn.egg-info/dependency_links.txt 2026-04-03T13:32:18,817 writing entry points to bfflearn.egg-info/entry_points.txt 2026-04-03T13:32:18,820 writing requirements to bfflearn.egg-info/requires.txt 2026-04-03T13:32:18,821 writing top-level names to bfflearn.egg-info/top_level.txt 2026-04-03T13:32:18,836 reading manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:18,840 adding license file 'LICENSE' 2026-04-03T13:32:18,845 writing manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T13:32:18,866 installing to build/bdist.linux-armv7l/wheel 2026-04-03T13:32:18,867 running install 2026-04-03T13:32:18,890 running install_lib 2026-04-03T13:32:18,896 creating build/bdist.linux-armv7l/wheel 2026-04-03T13:32:18,898 creating build/bdist.linux-armv7l/wheel/bff 2026-04-03T13:32:18,900 copying build/lib/bff/data.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,902 creating build/bdist.linux-armv7l/wheel/bff/mcmc 2026-04-03T13:32:18,903 copying build/lib/bff/mcmc/sampler.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T13:32:18,906 copying build/lib/bff/mcmc/proposal.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T13:32:18,909 copying build/lib/bff/mcmc/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T13:32:18,910 copying build/lib/bff/mcmc/convergence.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T13:32:18,914 creating build/bdist.linux-armv7l/wheel/bff/io 2026-04-03T13:32:18,915 copying build/lib/bff/io/schedulers.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,917 copying build/lib/bff/io/cp2k.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,919 copying build/lib/bff/io/plumed.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,922 copying build/lib/bff/io/commands.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,923 copying build/lib/bff/io/logs.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,926 copying build/lib/bff/io/colvars.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,928 copying build/lib/bff/io/utils.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,930 copying build/lib/bff/io/progress.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,932 copying build/lib/bff/io/mdp.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,934 copying build/lib/bff/io/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T13:32:18,936 copying build/lib/bff/tools.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,938 copying build/lib/bff/cli.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,940 copying build/lib/bff/plotting.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,943 creating build/bdist.linux-armv7l/wheel/bff/domain 2026-04-03T13:32:18,944 copying build/lib/bff/domain/specs.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T13:32:18,947 copying build/lib/bff/domain/bias.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T13:32:18,949 copying build/lib/bff/domain/trainset.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T13:32:18,952 copying build/lib/bff/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T13:32:18,954 creating build/bdist.linux-armv7l/wheel/bff/qoi 2026-04-03T13:32:18,955 copying build/lib/bff/qoi/hbonds.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,958 copying build/lib/bff/qoi/data.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,960 copying build/lib/bff/qoi/rdf.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,962 copying build/lib/bff/qoi/analysis.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,964 copying build/lib/bff/qoi/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,966 copying build/lib/bff/qoi/routines.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T13:32:18,969 copying build/lib/bff/topology.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,972 creating build/bdist.linux-armv7l/wheel/bff/bayes 2026-04-03T13:32:18,974 copying build/lib/bff/bayes/likelihoods.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,976 copying build/lib/bff/bayes/gaussian_process.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,978 copying build/lib/bff/bayes/learning.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,981 copying build/lib/bff/bayes/results.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,984 copying build/lib/bff/bayes/kernels.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,986 copying build/lib/bff/bayes/utils.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,988 copying build/lib/bff/bayes/posterior.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,991 copying build/lib/bff/bayes/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,993 copying build/lib/bff/bayes/priors.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T13:32:18,995 copying build/lib/bff/__init__.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T13:32:18,997 creating build/bdist.linux-armv7l/wheel/bff/workflows 2026-04-03T13:32:18,998 copying build/lib/bff/workflows/simulate.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,000 copying build/lib/bff/workflows/configs.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,003 copying build/lib/bff/workflows/learn.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,005 copying build/lib/bff/workflows/md.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,007 copying build/lib/bff/workflows/train.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,009 copying build/lib/bff/workflows/validate.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,011 copying build/lib/bff/workflows/examples.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,013 copying build/lib/bff/workflows/prepare.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,016 copying build/lib/bff/workflows/runsims.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,018 copying build/lib/bff/workflows/qoi.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,021 copying build/lib/bff/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T13:32:19,022 running install_egg_info 2026-04-03T13:32:19,028 Copying bfflearn.egg-info to build/bdist.linux-armv7l/wheel/./bfflearn-0.1.0.dev2-py3.11.egg-info 2026-04-03T13:32:19,040 running install_scripts 2026-04-03T13:32:19,053 creating build/bdist.linux-armv7l/wheel/bfflearn-0.1.0.dev2.dist-info/WHEEL 2026-04-03T13:32:19,056 creating '/tmp/pip-wheel-ba98mdu7/.tmp-39fmzd_j/bfflearn-0.1.0.dev2-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-03T13:32:19,059 adding 'bff/__init__.py' 2026-04-03T13:32:19,061 adding 'bff/cli.py' 2026-04-03T13:32:19,062 adding 'bff/data.py' 2026-04-03T13:32:19,065 adding 'bff/plotting.py' 2026-04-03T13:32:19,066 adding 'bff/tools.py' 2026-04-03T13:32:19,069 adding 'bff/topology.py' 2026-04-03T13:32:19,071 adding 'bff/bayes/__init__.py' 2026-04-03T13:32:19,073 adding 'bff/bayes/gaussian_process.py' 2026-04-03T13:32:19,075 adding 'bff/bayes/kernels.py' 2026-04-03T13:32:19,077 adding 'bff/bayes/learning.py' 2026-04-03T13:32:19,079 adding 'bff/bayes/likelihoods.py' 2026-04-03T13:32:19,080 adding 'bff/bayes/posterior.py' 2026-04-03T13:32:19,082 adding 'bff/bayes/priors.py' 2026-04-03T13:32:19,084 adding 'bff/bayes/results.py' 2026-04-03T13:32:19,086 adding 'bff/bayes/utils.py' 2026-04-03T13:32:19,088 adding 'bff/domain/__init__.py' 2026-04-03T13:32:19,089 adding 'bff/domain/bias.py' 2026-04-03T13:32:19,091 adding 'bff/domain/specs.py' 2026-04-03T13:32:19,093 adding 'bff/domain/trainset.py' 2026-04-03T13:32:19,095 adding 'bff/io/__init__.py' 2026-04-03T13:32:19,096 adding 'bff/io/colvars.py' 2026-04-03T13:32:19,098 adding 'bff/io/commands.py' 2026-04-03T13:32:19,100 adding 'bff/io/cp2k.py' 2026-04-03T13:32:19,101 adding 'bff/io/logs.py' 2026-04-03T13:32:19,103 adding 'bff/io/mdp.py' 2026-04-03T13:32:19,105 adding 'bff/io/plumed.py' 2026-04-03T13:32:19,106 adding 'bff/io/progress.py' 2026-04-03T13:32:19,107 adding 'bff/io/schedulers.py' 2026-04-03T13:32:19,109 adding 'bff/io/utils.py' 2026-04-03T13:32:19,111 adding 'bff/mcmc/__init__.py' 2026-04-03T13:32:19,113 adding 'bff/mcmc/convergence.py' 2026-04-03T13:32:19,114 adding 'bff/mcmc/proposal.py' 2026-04-03T13:32:19,117 adding 'bff/mcmc/sampler.py' 2026-04-03T13:32:19,119 adding 'bff/qoi/__init__.py' 2026-04-03T13:32:19,120 adding 'bff/qoi/analysis.py' 2026-04-03T13:32:19,122 adding 'bff/qoi/data.py' 2026-04-03T13:32:19,124 adding 'bff/qoi/hbonds.py' 2026-04-03T13:32:19,125 adding 'bff/qoi/rdf.py' 2026-04-03T13:32:19,127 adding 'bff/qoi/routines.py' 2026-04-03T13:32:19,129 adding 'bff/workflows/__init__.py' 2026-04-03T13:32:19,133 adding 'bff/workflows/configs.py' 2026-04-03T13:32:19,135 adding 'bff/workflows/examples.py' 2026-04-03T13:32:19,136 adding 'bff/workflows/learn.py' 2026-04-03T13:32:19,138 adding 'bff/workflows/md.py' 2026-04-03T13:32:19,141 adding 'bff/workflows/prepare.py' 2026-04-03T13:32:19,143 adding 'bff/workflows/qoi.py' 2026-04-03T13:32:19,146 adding 'bff/workflows/runsims.py' 2026-04-03T13:32:19,147 adding 'bff/workflows/simulate.py' 2026-04-03T13:32:19,148 adding 'bff/workflows/train.py' 2026-04-03T13:32:19,149 adding 'bff/workflows/validate.py' 2026-04-03T13:32:19,157 adding 'bfflearn-0.1.0.dev2.dist-info/licenses/LICENSE' 2026-04-03T13:32:19,165 adding 'bfflearn-0.1.0.dev2.dist-info/METADATA' 2026-04-03T13:32:19,166 adding 'bfflearn-0.1.0.dev2.dist-info/WHEEL' 2026-04-03T13:32:19,167 adding 'bfflearn-0.1.0.dev2.dist-info/entry_points.txt' 2026-04-03T13:32:19,168 adding 'bfflearn-0.1.0.dev2.dist-info/top_level.txt' 2026-04-03T13:32:19,169 adding 'bfflearn-0.1.0.dev2.dist-info/RECORD' 2026-04-03T13:32:19,173 removing build/bdist.linux-armv7l/wheel 2026-04-03T13:32:19,284 Building wheel for bfflearn (pyproject.toml): finished with status 'done' 2026-04-03T13:32:19,292 Created wheel for bfflearn: filename=bfflearn-0.1.0.dev2-py3-none-any.whl size=134034 sha256=d2153a643b4a19496936e42196e31232dbf29eb7a069d5fe2cb7ccf6497e1e10 2026-04-03T13:32:19,293 Stored in directory: /tmp/pip-ephem-wheel-cache-nm3mzwrb/wheels/ae/42/98/946756a3401e8f1475efb724ad4d45f22fafbac909745d07f6 2026-04-03T13:32:19,329 Successfully built bfflearn 2026-04-03T13:32:19,335 Removed build tracker: '/tmp/pip-build-tracker-k0o0yqd8'