2026-04-03T14:37:09,619 Created temporary directory: /tmp/pip-ephem-wheel-cache-3te2msjf 2026-04-03T14:37:09,621 Created temporary directory: /tmp/pip-build-tracker-2r1_qjss 2026-04-03T14:37:09,622 Initialized build tracking at /tmp/pip-build-tracker-2r1_qjss 2026-04-03T14:37:09,622 Created build tracker: /tmp/pip-build-tracker-2r1_qjss 2026-04-03T14:37:09,623 Entered build tracker: /tmp/pip-build-tracker-2r1_qjss 2026-04-03T14:37:09,624 Created temporary directory: /tmp/pip-wheel-i7cmc802 2026-04-03T14:37:09,626 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T14:37:09,629 Created temporary directory: /tmp/pip-ephem-wheel-cache-85sccmo8 2026-04-03T14:37:09,651 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T14:37:09,654 2 location(s) to search for versions of bfflearn: 2026-04-03T14:37:09,654 * https://pypi.org/simple/bfflearn/ 2026-04-03T14:37:09,654 * https://www.piwheels.org/simple/bfflearn/ 2026-04-03T14:37:09,655 Fetching project page and analyzing links: https://pypi.org/simple/bfflearn/ 2026-04-03T14:37:09,656 Getting page https://pypi.org/simple/bfflearn/ 2026-04-03T14:37:09,657 Found index url https://pypi.org/simple 2026-04-03T14:37:09,883 Fetched page https://pypi.org/simple/bfflearn/ as application/vnd.pypi.simple.v1+json 2026-04-03T14:37:09,886 Skipping link: No binaries permitted for bfflearn: https://files.pythonhosted.org/packages/c9/a0/de206c7bd12a418faed2ccac346a88777330895500b237997ffae9745cd9/bfflearn-0.1.0.dev1-py3-none-any.whl (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T14:37:09,887 Found link https://files.pythonhosted.org/packages/2d/dc/7fa40dd85a96eaf06e40e2e006a7ad38eef9af3db5aa96cb898af9a4a819/bfflearn-0.1.0.dev1.tar.gz (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10), version: 0.1.0.dev1 2026-04-03T14:37:09,887 Skipping link: No binaries permitted for bfflearn: https://files.pythonhosted.org/packages/0b/4f/b04fdc7d5f7fe37680dabaf446627c09a900dd22bcba5c3c18ee5860e4e0/bfflearn-0.1.0.dev2-py3-none-any.whl (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T14:37:09,888 Found link https://files.pythonhosted.org/packages/b8/83/41562445f0ae697f2f977e51962100a0fe66ef78d9ba8c36fe2073fd0fe0/bfflearn-0.1.0.dev2.tar.gz (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10), version: 0.1.0.dev2 2026-04-03T14:37:09,889 Skipping link: No binaries permitted for bfflearn: https://files.pythonhosted.org/packages/f2/ba/344f798639800a742936512010b3764de0a825180314b24b6ffd98806680/bfflearn-0.1.0.dev3-py3-none-any.whl (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T14:37:09,890 Found link https://files.pythonhosted.org/packages/bb/81/fe690f1210e8918a4e85dab41ca3db0579110674e9266ff4c70f53025fbb/bfflearn-0.1.0.dev3.tar.gz (from https://pypi.org/simple/bfflearn/) (requires-python:>=3.10), version: 0.1.0.dev3 2026-04-03T14:37:09,891 Fetching project page and analyzing links: https://www.piwheels.org/simple/bfflearn/ 2026-04-03T14:37:09,892 Getting page https://www.piwheels.org/simple/bfflearn/ 2026-04-03T14:37:09,893 Found index url https://www.piwheels.org/simple 2026-04-03T14:37:10,060 Fetched page https://www.piwheels.org/simple/bfflearn/ as text/html 2026-04-03T14:37:10,062 Skipping link: No binaries permitted for bfflearn: https://www.piwheels.org/simple/bfflearn/bfflearn-0.1.0.dev2-py3-none-any.whl#sha256=d2153a643b4a19496936e42196e31232dbf29eb7a069d5fe2cb7ccf6497e1e10 (from https://www.piwheels.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T14:37:10,063 Skipping link: No binaries permitted for bfflearn: https://www.piwheels.org/simple/bfflearn/bfflearn-0.1.0.dev1-py3-none-any.whl#sha256=14318910e0c514ef151ee1390daef037d21efe3e1c6c539ae71244cfdfdeb5e9 (from https://www.piwheels.org/simple/bfflearn/) (requires-python:>=3.10) 2026-04-03T14:37:10,064 Skipping link: not a file: https://www.piwheels.org/simple/bfflearn/ 2026-04-03T14:37:10,065 Skipping link: not a file: https://pypi.org/simple/bfflearn/ 2026-04-03T14:37:10,084 Given no hashes to check 1 links for project 'bfflearn': discarding no candidates 2026-04-03T14:37:10,102 Collecting bfflearn==0.1.0.dev3 2026-04-03T14:37:10,104 Created temporary directory: /tmp/pip-unpack-wp05ygqs 2026-04-03T14:37:10,336 Downloading bfflearn-0.1.0.dev3.tar.gz (130 kB) 2026-04-03T14:37:10,562 Added bfflearn==0.1.0.dev3 from https://files.pythonhosted.org/packages/bb/81/fe690f1210e8918a4e85dab41ca3db0579110674e9266ff4c70f53025fbb/bfflearn-0.1.0.dev3.tar.gz to build tracker '/tmp/pip-build-tracker-2r1_qjss' 2026-04-03T14:37:10,569 Created temporary directory: /tmp/pip-build-env-1gcjkk1h 2026-04-03T14:37:10,574 Installing build dependencies: started 2026-04-03T14:37:10,575 Running command pip subprocess to install build dependencies 2026-04-03T14:37:11,745 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-03T14:37:12,189 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-03T14:37:12,212 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-03T14:37:13,978 Collecting setuptools>=61 2026-04-03T14:37:14,052 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-03T14:37:14,326 Collecting wheel 2026-04-03T14:37:14,340 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-03T14:37:14,743 Collecting pip 2026-04-03T14:37:14,882 Using cached https://www.piwheels.org/simple/pip/pip-26.0.1-py3-none-any.whl (1.8 MB) 2026-04-03T14:37:15,146 Collecting packaging>=24.0 2026-04-03T14:37:15,162 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-03T14:37:18,148 Installing collected packages: setuptools, pip, packaging, wheel 2026-04-03T14:37:25,240 Creating /tmp/pip-build-env-1gcjkk1h/overlay/local/bin 2026-04-03T14:37:25,242 changing mode of /tmp/pip-build-env-1gcjkk1h/overlay/local/bin/pip to 755 2026-04-03T14:37:25,244 changing mode of /tmp/pip-build-env-1gcjkk1h/overlay/local/bin/pip3 to 755 2026-04-03T14:37:25,246 changing mode of /tmp/pip-build-env-1gcjkk1h/overlay/local/bin/pip3.11 to 755 2026-04-03T14:37:25,596 changing mode of /tmp/pip-build-env-1gcjkk1h/overlay/local/bin/wheel to 755 2026-04-03T14:37:25,624 Successfully installed packaging-26.0 pip-26.0.1 setuptools-82.0.1 wheel-0.46.3 2026-04-03T14:37:25,912 Installing build dependencies: finished with status 'done' 2026-04-03T14:37:25,918 Getting requirements to build wheel: started 2026-04-03T14:37:25,920 Running command Getting requirements to build wheel 2026-04-03T14:37:26,550 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T14:37:26,550 !! 2026-04-03T14:37:26,551 ******************************************************************************** 2026-04-03T14:37:26,552 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T14:37:26,553 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T14:37:26,554 or your builds will no longer be supported. 2026-04-03T14:37:26,555 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:26,555 ******************************************************************************** 2026-04-03T14:37:26,556 !! 2026-04-03T14:37:26,557 corresp(dist, value, root_dir) 2026-04-03T14:37:26,630 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:26,631 !! 2026-04-03T14:37:26,632 ******************************************************************************** 2026-04-03T14:37:26,632 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:26,633 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:26,634 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:26,634 ******************************************************************************** 2026-04-03T14:37:26,635 !! 2026-04-03T14:37:26,636 dist._finalize_license_expression() 2026-04-03T14:37:26,636 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:26,637 !! 2026-04-03T14:37:26,638 ******************************************************************************** 2026-04-03T14:37:26,638 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:26,639 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:26,640 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:26,640 ******************************************************************************** 2026-04-03T14:37:26,642 !! 2026-04-03T14:37:26,642 self._finalize_license_expression() 2026-04-03T14:37:26,643 running egg_info 2026-04-03T14:37:26,648 writing bfflearn.egg-info/PKG-INFO 2026-04-03T14:37:26,656 writing dependency_links to bfflearn.egg-info/dependency_links.txt 2026-04-03T14:37:26,657 writing entry points to bfflearn.egg-info/entry_points.txt 2026-04-03T14:37:26,661 writing requirements to bfflearn.egg-info/requires.txt 2026-04-03T14:37:26,662 writing top-level names to bfflearn.egg-info/top_level.txt 2026-04-03T14:37:26,690 reading manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:26,694 adding license file 'LICENSE' 2026-04-03T14:37:26,699 writing manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:26,796 Getting requirements to build wheel: finished with status 'done' 2026-04-03T14:37:26,800 Created temporary directory: /tmp/pip-modern-metadata-tadr07pr 2026-04-03T14:37:26,803 Preparing metadata (pyproject.toml): started 2026-04-03T14:37:26,804 Running command Preparing metadata (pyproject.toml) 2026-04-03T14:37:27,371 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T14:37:27,371 !! 2026-04-03T14:37:27,372 ******************************************************************************** 2026-04-03T14:37:27,373 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T14:37:27,374 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T14:37:27,375 or your builds will no longer be supported. 2026-04-03T14:37:27,376 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:27,377 ******************************************************************************** 2026-04-03T14:37:27,378 !! 2026-04-03T14:37:27,379 corresp(dist, value, root_dir) 2026-04-03T14:37:27,449 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:27,450 !! 2026-04-03T14:37:27,451 ******************************************************************************** 2026-04-03T14:37:27,451 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:27,452 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:27,453 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:27,453 ******************************************************************************** 2026-04-03T14:37:27,454 !! 2026-04-03T14:37:27,455 dist._finalize_license_expression() 2026-04-03T14:37:27,455 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:27,456 !! 2026-04-03T14:37:27,457 ******************************************************************************** 2026-04-03T14:37:27,457 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:27,458 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:27,459 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:27,460 ******************************************************************************** 2026-04-03T14:37:27,461 !! 2026-04-03T14:37:27,462 self._finalize_license_expression() 2026-04-03T14:37:27,462 running dist_info 2026-04-03T14:37:27,472 creating /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info 2026-04-03T14:37:27,474 writing /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/PKG-INFO 2026-04-03T14:37:27,481 writing dependency_links to /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/dependency_links.txt 2026-04-03T14:37:27,483 writing entry points to /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/entry_points.txt 2026-04-03T14:37:27,486 writing requirements to /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/requires.txt 2026-04-03T14:37:27,487 writing top-level names to /tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/top_level.txt 2026-04-03T14:37:27,488 writing manifest file '/tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:27,513 reading manifest file '/tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:27,515 adding license file 'LICENSE' 2026-04-03T14:37:27,519 writing manifest file '/tmp/pip-modern-metadata-tadr07pr/bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:27,520 creating '/tmp/pip-modern-metadata-tadr07pr/bfflearn-0.1.0.dev3.dist-info' 2026-04-03T14:37:27,647 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-03T14:37:27,660 Source in /tmp/pip-wheel-i7cmc802/bfflearn_18e862d68d344aa6898a29a0aacf3d3d has version 0.1.0.dev3, which satisfies requirement bfflearn==0.1.0.dev3 from https://files.pythonhosted.org/packages/bb/81/fe690f1210e8918a4e85dab41ca3db0579110674e9266ff4c70f53025fbb/bfflearn-0.1.0.dev3.tar.gz 2026-04-03T14:37:27,661 Removed bfflearn==0.1.0.dev3 from https://files.pythonhosted.org/packages/bb/81/fe690f1210e8918a4e85dab41ca3db0579110674e9266ff4c70f53025fbb/bfflearn-0.1.0.dev3.tar.gz from build tracker '/tmp/pip-build-tracker-2r1_qjss' 2026-04-03T14:37:27,681 Created temporary directory: /tmp/pip-unpack-cajvb3qr 2026-04-03T14:37:27,682 Building wheels for collected packages: bfflearn 2026-04-03T14:37:27,687 Created temporary directory: /tmp/pip-wheel-qic1fshq 2026-04-03T14:37:27,687 Destination directory: /tmp/pip-wheel-qic1fshq 2026-04-03T14:37:27,690 Building wheel for bfflearn (pyproject.toml): started 2026-04-03T14:37:27,691 Running command Building wheel for bfflearn (pyproject.toml) 2026-04-03T14:37:28,244 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-03T14:37:28,244 !! 2026-04-03T14:37:28,245 ******************************************************************************** 2026-04-03T14:37:28,246 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-03T14:37:28,247 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-03T14:37:28,248 or your builds will no longer be supported. 2026-04-03T14:37:28,249 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:28,249 ******************************************************************************** 2026-04-03T14:37:28,250 !! 2026-04-03T14:37:28,251 corresp(dist, value, root_dir) 2026-04-03T14:37:28,315 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:28,316 !! 2026-04-03T14:37:28,317 ******************************************************************************** 2026-04-03T14:37:28,317 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:28,318 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:28,319 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:28,320 ******************************************************************************** 2026-04-03T14:37:28,321 !! 2026-04-03T14:37:28,322 dist._finalize_license_expression() 2026-04-03T14:37:28,323 /tmp/pip-build-env-1gcjkk1h/overlay/local/lib/python3.11/dist-packages/setuptools/dist.py:765: SetuptoolsDeprecationWarning: License classifiers are deprecated. 2026-04-03T14:37:28,323 !! 2026-04-03T14:37:28,325 ******************************************************************************** 2026-04-03T14:37:28,325 Please consider removing the following classifiers in favor of a SPDX license expression: 2026-04-03T14:37:28,327 License :: OSI Approved :: GNU General Public License v3 (GPLv3) 2026-04-03T14:37:28,328 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-03T14:37:28,329 ******************************************************************************** 2026-04-03T14:37:28,330 !! 2026-04-03T14:37:28,330 self._finalize_license_expression() 2026-04-03T14:37:28,331 running bdist_wheel 2026-04-03T14:37:28,342 running build 2026-04-03T14:37:28,343 running build_py 2026-04-03T14:37:28,349 creating build/lib/bff 2026-04-03T14:37:28,351 copying bff/topology.py -> build/lib/bff 2026-04-03T14:37:28,354 copying bff/plotting.py -> build/lib/bff 2026-04-03T14:37:28,357 copying bff/tools.py -> build/lib/bff 2026-04-03T14:37:28,360 copying bff/__init__.py -> build/lib/bff 2026-04-03T14:37:28,362 copying bff/data.py -> build/lib/bff 2026-04-03T14:37:28,364 copying bff/cli.py -> build/lib/bff 2026-04-03T14:37:28,367 creating build/lib/bff/qoi 2026-04-03T14:37:28,368 copying bff/qoi/__init__.py -> build/lib/bff/qoi 2026-04-03T14:37:28,370 copying bff/qoi/hbonds.py -> build/lib/bff/qoi 2026-04-03T14:37:28,373 copying bff/qoi/data.py -> build/lib/bff/qoi 2026-04-03T14:37:28,375 copying bff/qoi/routines.py -> build/lib/bff/qoi 2026-04-03T14:37:28,378 copying bff/qoi/rdf.py -> build/lib/bff/qoi 2026-04-03T14:37:28,380 copying bff/qoi/analysis.py -> build/lib/bff/qoi 2026-04-03T14:37:28,383 creating build/lib/bff/workflows 2026-04-03T14:37:28,384 copying bff/workflows/md.py -> build/lib/bff/workflows 2026-04-03T14:37:28,388 copying bff/workflows/qoi.py -> build/lib/bff/workflows 2026-04-03T14:37:28,390 copying bff/workflows/train.py -> build/lib/bff/workflows 2026-04-03T14:37:28,392 copying bff/workflows/validate.py -> build/lib/bff/workflows 2026-04-03T14:37:28,394 copying bff/workflows/learn.py -> build/lib/bff/workflows 2026-04-03T14:37:28,395 copying bff/workflows/simulate.py -> build/lib/bff/workflows 2026-04-03T14:37:28,397 copying bff/workflows/configs.py -> build/lib/bff/workflows 2026-04-03T14:37:28,400 copying bff/workflows/examples.py -> build/lib/bff/workflows 2026-04-03T14:37:28,402 copying bff/workflows/prepare.py -> build/lib/bff/workflows 2026-04-03T14:37:28,405 copying bff/workflows/__init__.py -> build/lib/bff/workflows 2026-04-03T14:37:28,406 copying bff/workflows/runsims.py -> build/lib/bff/workflows 2026-04-03T14:37:28,409 creating build/lib/bff/io 2026-04-03T14:37:28,410 copying bff/io/logs.py -> build/lib/bff/io 2026-04-03T14:37:28,413 copying bff/io/colvars.py -> build/lib/bff/io 2026-04-03T14:37:28,415 copying bff/io/commands.py -> build/lib/bff/io 2026-04-03T14:37:28,417 copying bff/io/__init__.py -> build/lib/bff/io 2026-04-03T14:37:28,418 copying bff/io/utils.py -> build/lib/bff/io 2026-04-03T14:37:28,421 copying bff/io/schedulers.py -> build/lib/bff/io 2026-04-03T14:37:28,422 copying bff/io/progress.py -> build/lib/bff/io 2026-04-03T14:37:28,424 copying bff/io/mdp.py -> build/lib/bff/io 2026-04-03T14:37:28,426 copying bff/io/cp2k.py -> build/lib/bff/io 2026-04-03T14:37:28,428 copying bff/io/plumed.py -> build/lib/bff/io 2026-04-03T14:37:28,431 creating build/lib/bff/mcmc 2026-04-03T14:37:28,432 copying bff/mcmc/sampler.py -> build/lib/bff/mcmc 2026-04-03T14:37:28,435 copying bff/mcmc/proposal.py -> build/lib/bff/mcmc 2026-04-03T14:37:28,437 copying bff/mcmc/__init__.py -> build/lib/bff/mcmc 2026-04-03T14:37:28,439 copying bff/mcmc/convergence.py -> build/lib/bff/mcmc 2026-04-03T14:37:28,442 creating build/lib/bff/domain 2026-04-03T14:37:28,443 copying bff/domain/__init__.py -> build/lib/bff/domain 2026-04-03T14:37:28,445 copying bff/domain/bias.py -> build/lib/bff/domain 2026-04-03T14:37:28,447 copying bff/domain/trainset.py -> build/lib/bff/domain 2026-04-03T14:37:28,449 copying bff/domain/specs.py -> build/lib/bff/domain 2026-04-03T14:37:28,452 creating build/lib/bff/bayes 2026-04-03T14:37:28,453 copying bff/bayes/learning.py -> build/lib/bff/bayes 2026-04-03T14:37:28,455 copying bff/bayes/likelihoods.py -> build/lib/bff/bayes 2026-04-03T14:37:28,457 copying bff/bayes/results.py -> build/lib/bff/bayes 2026-04-03T14:37:28,460 copying bff/bayes/__init__.py -> build/lib/bff/bayes 2026-04-03T14:37:28,461 copying bff/bayes/gaussian_process.py -> build/lib/bff/bayes 2026-04-03T14:37:28,464 copying bff/bayes/utils.py -> build/lib/bff/bayes 2026-04-03T14:37:28,466 copying bff/bayes/priors.py -> build/lib/bff/bayes 2026-04-03T14:37:28,468 copying bff/bayes/kernels.py -> build/lib/bff/bayes 2026-04-03T14:37:28,470 copying bff/bayes/posterior.py -> build/lib/bff/bayes 2026-04-03T14:37:28,472 running egg_info 2026-04-03T14:37:28,482 writing bfflearn.egg-info/PKG-INFO 2026-04-03T14:37:28,489 writing dependency_links to bfflearn.egg-info/dependency_links.txt 2026-04-03T14:37:28,490 writing entry points to bfflearn.egg-info/entry_points.txt 2026-04-03T14:37:28,493 writing requirements to bfflearn.egg-info/requires.txt 2026-04-03T14:37:28,494 writing top-level names to bfflearn.egg-info/top_level.txt 2026-04-03T14:37:28,509 reading manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:28,513 adding license file 'LICENSE' 2026-04-03T14:37:28,518 writing manifest file 'bfflearn.egg-info/SOURCES.txt' 2026-04-03T14:37:28,535 installing to build/bdist.linux-armv7l/wheel 2026-04-03T14:37:28,536 running install 2026-04-03T14:37:28,559 running install_lib 2026-04-03T14:37:28,565 creating build/bdist.linux-armv7l/wheel 2026-04-03T14:37:28,567 creating build/bdist.linux-armv7l/wheel/bff 2026-04-03T14:37:28,568 copying build/lib/bff/topology.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,572 creating build/bdist.linux-armv7l/wheel/bff/qoi 2026-04-03T14:37:28,572 copying build/lib/bff/qoi/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,574 copying build/lib/bff/qoi/hbonds.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,576 copying build/lib/bff/qoi/data.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,578 copying build/lib/bff/qoi/routines.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,580 copying build/lib/bff/qoi/rdf.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,582 copying build/lib/bff/qoi/analysis.py -> build/bdist.linux-armv7l/wheel/./bff/qoi 2026-04-03T14:37:28,584 copying build/lib/bff/plotting.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,587 creating build/bdist.linux-armv7l/wheel/bff/workflows 2026-04-03T14:37:28,588 copying build/lib/bff/workflows/md.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,591 copying build/lib/bff/workflows/qoi.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,593 copying build/lib/bff/workflows/train.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,595 copying build/lib/bff/workflows/validate.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,597 copying build/lib/bff/workflows/learn.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,599 copying build/lib/bff/workflows/simulate.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,601 copying build/lib/bff/workflows/configs.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,603 copying build/lib/bff/workflows/examples.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,606 copying build/lib/bff/workflows/prepare.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,608 copying build/lib/bff/workflows/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,610 copying build/lib/bff/workflows/runsims.py -> build/bdist.linux-armv7l/wheel/./bff/workflows 2026-04-03T14:37:28,613 copying build/lib/bff/tools.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,615 creating build/bdist.linux-armv7l/wheel/bff/io 2026-04-03T14:37:28,616 copying build/lib/bff/io/logs.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,619 copying build/lib/bff/io/colvars.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,621 copying build/lib/bff/io/commands.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,623 copying build/lib/bff/io/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,625 copying build/lib/bff/io/utils.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,627 copying build/lib/bff/io/schedulers.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,629 copying build/lib/bff/io/progress.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,631 copying build/lib/bff/io/mdp.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,633 copying build/lib/bff/io/cp2k.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,636 copying build/lib/bff/io/plumed.py -> build/bdist.linux-armv7l/wheel/./bff/io 2026-04-03T14:37:28,638 copying build/lib/bff/__init__.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,641 creating build/bdist.linux-armv7l/wheel/bff/mcmc 2026-04-03T14:37:28,642 copying build/lib/bff/mcmc/sampler.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T14:37:28,645 copying build/lib/bff/mcmc/proposal.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T14:37:28,647 copying build/lib/bff/mcmc/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T14:37:28,649 copying build/lib/bff/mcmc/convergence.py -> build/bdist.linux-armv7l/wheel/./bff/mcmc 2026-04-03T14:37:28,651 copying build/lib/bff/data.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,654 creating build/bdist.linux-armv7l/wheel/bff/domain 2026-04-03T14:37:28,655 copying build/lib/bff/domain/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T14:37:28,657 copying build/lib/bff/domain/bias.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T14:37:28,659 copying build/lib/bff/domain/trainset.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T14:37:28,661 copying build/lib/bff/domain/specs.py -> build/bdist.linux-armv7l/wheel/./bff/domain 2026-04-03T14:37:28,664 creating build/bdist.linux-armv7l/wheel/bff/bayes 2026-04-03T14:37:28,665 copying build/lib/bff/bayes/learning.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,668 copying build/lib/bff/bayes/likelihoods.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,670 copying build/lib/bff/bayes/results.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,672 copying build/lib/bff/bayes/__init__.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,674 copying build/lib/bff/bayes/gaussian_process.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,677 copying build/lib/bff/bayes/utils.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,679 copying build/lib/bff/bayes/priors.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,681 copying build/lib/bff/bayes/kernels.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,683 copying build/lib/bff/bayes/posterior.py -> build/bdist.linux-armv7l/wheel/./bff/bayes 2026-04-03T14:37:28,685 copying build/lib/bff/cli.py -> build/bdist.linux-armv7l/wheel/./bff 2026-04-03T14:37:28,687 running install_egg_info 2026-04-03T14:37:28,693 Copying bfflearn.egg-info to build/bdist.linux-armv7l/wheel/./bfflearn-0.1.0.dev3-py3.11.egg-info 2026-04-03T14:37:28,706 running install_scripts 2026-04-03T14:37:28,721 creating build/bdist.linux-armv7l/wheel/bfflearn-0.1.0.dev3.dist-info/WHEEL 2026-04-03T14:37:28,724 creating '/tmp/pip-wheel-qic1fshq/.tmp-7o0eqa_j/bfflearn-0.1.0.dev3-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-03T14:37:28,727 adding 'bff/__init__.py' 2026-04-03T14:37:28,729 adding 'bff/cli.py' 2026-04-03T14:37:28,730 adding 'bff/data.py' 2026-04-03T14:37:28,732 adding 'bff/plotting.py' 2026-04-03T14:37:28,734 adding 'bff/tools.py' 2026-04-03T14:37:28,737 adding 'bff/topology.py' 2026-04-03T14:37:28,739 adding 'bff/bayes/__init__.py' 2026-04-03T14:37:28,740 adding 'bff/bayes/gaussian_process.py' 2026-04-03T14:37:28,742 adding 'bff/bayes/kernels.py' 2026-04-03T14:37:28,744 adding 'bff/bayes/learning.py' 2026-04-03T14:37:28,745 adding 'bff/bayes/likelihoods.py' 2026-04-03T14:37:28,747 adding 'bff/bayes/posterior.py' 2026-04-03T14:37:28,749 adding 'bff/bayes/priors.py' 2026-04-03T14:37:28,751 adding 'bff/bayes/results.py' 2026-04-03T14:37:28,753 adding 'bff/bayes/utils.py' 2026-04-03T14:37:28,755 adding 'bff/domain/__init__.py' 2026-04-03T14:37:28,756 adding 'bff/domain/bias.py' 2026-04-03T14:37:28,758 adding 'bff/domain/specs.py' 2026-04-03T14:37:28,760 adding 'bff/domain/trainset.py' 2026-04-03T14:37:28,762 adding 'bff/io/__init__.py' 2026-04-03T14:37:28,764 adding 'bff/io/colvars.py' 2026-04-03T14:37:28,765 adding 'bff/io/commands.py' 2026-04-03T14:37:28,767 adding 'bff/io/cp2k.py' 2026-04-03T14:37:28,768 adding 'bff/io/logs.py' 2026-04-03T14:37:28,770 adding 'bff/io/mdp.py' 2026-04-03T14:37:28,771 adding 'bff/io/plumed.py' 2026-04-03T14:37:28,773 adding 'bff/io/progress.py' 2026-04-03T14:37:28,774 adding 'bff/io/schedulers.py' 2026-04-03T14:37:28,776 adding 'bff/io/utils.py' 2026-04-03T14:37:28,778 adding 'bff/mcmc/__init__.py' 2026-04-03T14:37:28,779 adding 'bff/mcmc/convergence.py' 2026-04-03T14:37:28,781 adding 'bff/mcmc/proposal.py' 2026-04-03T14:37:28,783 adding 'bff/mcmc/sampler.py' 2026-04-03T14:37:28,785 adding 'bff/qoi/__init__.py' 2026-04-03T14:37:28,786 adding 'bff/qoi/analysis.py' 2026-04-03T14:37:28,788 adding 'bff/qoi/data.py' 2026-04-03T14:37:28,790 adding 'bff/qoi/hbonds.py' 2026-04-03T14:37:28,791 adding 'bff/qoi/rdf.py' 2026-04-03T14:37:28,793 adding 'bff/qoi/routines.py' 2026-04-03T14:37:28,794 adding 'bff/workflows/__init__.py' 2026-04-03T14:37:28,798 adding 'bff/workflows/configs.py' 2026-04-03T14:37:28,800 adding 'bff/workflows/examples.py' 2026-04-03T14:37:28,801 adding 'bff/workflows/learn.py' 2026-04-03T14:37:28,803 adding 'bff/workflows/md.py' 2026-04-03T14:37:28,806 adding 'bff/workflows/prepare.py' 2026-04-03T14:37:28,808 adding 'bff/workflows/qoi.py' 2026-04-03T14:37:28,810 adding 'bff/workflows/runsims.py' 2026-04-03T14:37:28,812 adding 'bff/workflows/simulate.py' 2026-04-03T14:37:28,813 adding 'bff/workflows/train.py' 2026-04-03T14:37:28,814 adding 'bff/workflows/validate.py' 2026-04-03T14:37:28,822 adding 'bfflearn-0.1.0.dev3.dist-info/licenses/LICENSE' 2026-04-03T14:37:28,829 adding 'bfflearn-0.1.0.dev3.dist-info/METADATA' 2026-04-03T14:37:28,831 adding 'bfflearn-0.1.0.dev3.dist-info/WHEEL' 2026-04-03T14:37:28,832 adding 'bfflearn-0.1.0.dev3.dist-info/entry_points.txt' 2026-04-03T14:37:28,833 adding 'bfflearn-0.1.0.dev3.dist-info/top_level.txt' 2026-04-03T14:37:28,834 adding 'bfflearn-0.1.0.dev3.dist-info/RECORD' 2026-04-03T14:37:28,837 removing build/bdist.linux-armv7l/wheel 2026-04-03T14:37:28,969 Building wheel for bfflearn (pyproject.toml): finished with status 'done' 2026-04-03T14:37:28,978 Created wheel for bfflearn: filename=bfflearn-0.1.0.dev3-py3-none-any.whl size=134035 sha256=c1881c34fe50c837800b21fb0b95685b41e8e3c627d57311d18b4e62b30a34ff 2026-04-03T14:37:28,979 Stored in directory: /tmp/pip-ephem-wheel-cache-85sccmo8/wheels/47/dd/ce/49bb413b1741699b319331e954b2e0853e47bc2026a2b1320a 2026-04-03T14:37:29,016 Successfully built bfflearn 2026-04-03T14:37:29,022 Removed build tracker: '/tmp/pip-build-tracker-2r1_qjss'