2026-04-05T04:03:15,856 Created temporary directory: /tmp/pip-ephem-wheel-cache-e__8qt_l 2026-04-05T04:03:15,857 Created temporary directory: /tmp/pip-build-tracker-e_h4bvxf 2026-04-05T04:03:15,858 Initialized build tracking at /tmp/pip-build-tracker-e_h4bvxf 2026-04-05T04:03:15,858 Created build tracker: /tmp/pip-build-tracker-e_h4bvxf 2026-04-05T04:03:15,859 Entered build tracker: /tmp/pip-build-tracker-e_h4bvxf 2026-04-05T04:03:15,859 Created temporary directory: /tmp/pip-wheel-u_6q4tgb 2026-04-05T04:03:15,862 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. 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https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.6-py3-none-any.whl#sha256=1bfe8259dffda77c2069b3379b8ca747517469218b7560d1ba70ec90e647170c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,476 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.5-py3-none-any.whl#sha256=6128714021304fd88e4dc3ec105ff82d596b27e93cb3da9fd245a11efe32318b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,476 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.4-py3-none-any.whl#sha256=0ee0ee85ac41f9868d9382271ed93d24f6e8e5b675ca144ef2802cd9c9641627 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,477 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.3-py3-none-any.whl#sha256=4f60a1d234a3b91ef288b3319c30e925923f86bede48948307ba573d7058f598 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,477 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.2-py3-none-any.whl#sha256=46204165e625355c881fae9a0289295de89da868f61777f89430b974c5e49502 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,478 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.1-py3-none-any.whl#sha256=36486f7a179adc784d1418fa7298b5536b1d4817569b749cd5153bbb2c08c04a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,478 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.5.0-py3-none-any.whl#sha256=ccb9351c403b3eb871bb8a319da880f412d758800964b1789954b310b0fc761f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,479 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.17-py3-none-any.whl#sha256=61e0339c8e30df3c404a1ce2e1bd1ac4649c486655f81ab81a2bc5db81fb92de (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,480 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.16-py3-none-any.whl#sha256=f85fabdac2f55e62bf381e051890394fec36d2b2fc8f4260220e7b19469b3f4a (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,480 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.15-py3-none-any.whl#sha256=c237a3af5d372377e01876a9a2635fbe301ba895ddc4040d78cdf2d2c5f5ca5c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,481 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.14-py3-none-any.whl#sha256=8a5164c360da7406fe0109b643c7ae01eede50038638464581a0f90c2f6e94fb (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,481 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.13-py3-none-any.whl#sha256=8d70fa24499dcead1d7bcf75c85efc58e5fb5d98a691bf17420c8487be1b942c (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,482 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.12-py3-none-any.whl#sha256=f6d137f17dcd051ada45eb7057a8c10bf4f149041cf3f68fe724a6a01cdb444b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,482 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.11-py3-none-any.whl#sha256=b071e34332a90c643adcfb14d7494a3fe6e7f7ac28cf89deacbc794b0bafb8b7 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,483 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.10-py3-none-any.whl#sha256=40cd33f1d8d212e04622792cc0c20661ca8313e8275e61d9cb8e09e01ac01b1f (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,483 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.9-py3-none-any.whl#sha256=dc2725b3b94339b683bf7be81df1f6d69b3c73c224f58fd047ac315deabc5c24 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,484 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.8-py3-none-any.whl#sha256=a9dd4a4e5323d2c5b35522b726fb9bc9c95bf9be91768254ae5c4df84bc2c115 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,484 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.7-py3-none-any.whl#sha256=f4daae38dcce6b770285e60a33c50fe655e05a0bbee29f37ff994ba7ce660029 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,485 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.6-py3-none-any.whl#sha256=4f8ec09d158a47d34ea2903bad1ff725186c250a2d82a957f0d2e65361eba625 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,486 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.5-py3-none-any.whl#sha256=6b99db66ab1294683fbda1f9c3d729b6423bd12dd4dbb4b9d98e98d7c0a10217 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,486 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.4-py3-none-any.whl#sha256=d6296bf41c4fe856271ad686d0514e6990c1cad56416e0387e066bb350de4a92 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,487 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.3-py3-none-any.whl#sha256=fba463626a22548c1baa5e3cea969d93baefec5c85a1cd9335fc66330e847c30 (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,488 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.2-py3-none-any.whl#sha256=9c68004ab9f92b067eb4527b98f076c9482911b8da517d4e4f120bb8eb37ab5b (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,488 Skipping link: No binaries permitted for omicverse: https://archive1.piwheels.org/simple/omicverse/omicverse-1.4.1-py3-none-any.whl#sha256=5b0bbe0b44545f4dce127e96473e9352a9e24842502a250c8a280ca61dbd6e0e (from https://www.piwheels.org/simple/omicverse/) (requires-python:>=3.8) 2026-04-05T04:03:16,489 Skipping link: not a file: https://www.piwheels.org/simple/omicverse/ 2026-04-05T04:03:16,489 Skipping link: not a file: https://pypi.org/simple/omicverse/ 2026-04-05T04:03:16,517 Given no hashes to check 1 links for project 'omicverse': discarding no candidates 2026-04-05T04:03:16,537 Collecting omicverse==2.1.1 2026-04-05T04:03:16,539 Created temporary directory: /tmp/pip-unpack-jz_jfrr8 2026-04-05T04:03:16,687 Downloading omicverse-2.1.1.tar.gz (12.0 MB) 2026-04-05T04:03:22,305 Added omicverse==2.1.1 from https://files.pythonhosted.org/packages/57/65/62a0e2461f6a98da138d1e44e46c1f243d3a2265cb0df36b2d83b2125ee2/omicverse-2.1.1.tar.gz to build tracker '/tmp/pip-build-tracker-e_h4bvxf' 2026-04-05T04:03:22,316 Created temporary directory: /tmp/pip-build-env-kafbcv9d 2026-04-05T04:03:22,322 Installing build dependencies: started 2026-04-05T04:03:22,323 Running command pip subprocess to install build dependencies 2026-04-05T04:03:23,476 Using pip 23.0.1 from /usr/lib/python3/dist-packages/pip (python 3.11) 2026-04-05T04:03:23,883 DEPRECATION: --no-binary currently disables reading from the cache of locally built wheels. In the future --no-binary will not influence the wheel cache. pip 23.1 will enforce this behaviour change. A possible replacement is to use the --no-cache-dir option. You can use the flag --use-feature=no-binary-enable-wheel-cache to test the upcoming behaviour. Discussion can be found at https://github.com/pypa/pip/issues/11453 2026-04-05T04:03:23,906 Looking in indexes: https://pypi.org/simple, https://www.piwheels.org/simple 2026-04-05T04:03:25,680 Collecting setuptools>=61 2026-04-05T04:03:25,779 Using cached https://www.piwheels.org/simple/setuptools/setuptools-82.0.1-py3-none-any.whl (1.0 MB) 2026-04-05T04:03:26,050 Collecting wheel 2026-04-05T04:03:26,066 Using cached https://www.piwheels.org/simple/wheel/wheel-0.46.3-py3-none-any.whl (30 kB) 2026-04-05T04:03:28,081 Collecting Cython 2026-04-05T04:03:29,806 Using cached https://www.piwheels.org/simple/cython/cython-3.2.4-cp311-cp311-linux_armv7l.whl (11.1 MB) 2026-04-05T04:03:30,341 Collecting packaging>=24.0 2026-04-05T04:03:30,363 Using cached https://www.piwheels.org/simple/packaging/packaging-26.0-py3-none-any.whl (74 kB) 2026-04-05T04:03:33,363 Installing collected packages: setuptools, packaging, Cython, wheel 2026-04-05T04:03:40,244 Creating /tmp/pip-build-env-kafbcv9d/overlay/local/bin 2026-04-05T04:03:40,247 changing mode of /tmp/pip-build-env-kafbcv9d/overlay/local/bin/cygdb to 755 2026-04-05T04:03:40,249 changing mode of /tmp/pip-build-env-kafbcv9d/overlay/local/bin/cython to 755 2026-04-05T04:03:40,252 changing mode of /tmp/pip-build-env-kafbcv9d/overlay/local/bin/cythonize to 755 2026-04-05T04:03:40,376 changing mode of /tmp/pip-build-env-kafbcv9d/overlay/local/bin/wheel to 755 2026-04-05T04:03:40,404 Successfully installed Cython-3.2.4 packaging-26.0 setuptools-82.0.1 wheel-0.46.3 2026-04-05T04:03:40,779 Installing build dependencies: finished with status 'done' 2026-04-05T04:03:40,786 Getting requirements to build wheel: started 2026-04-05T04:03:40,787 Running command Getting requirements to build wheel 2026-04-05T04:03:41,526 /tmp/pip-build-env-kafbcv9d/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-05T04:03:41,527 !! 2026-04-05T04:03:41,528 ******************************************************************************** 2026-04-05T04:03:41,528 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-05T04:03:41,529 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-05T04:03:41,529 or your builds will no longer be supported. 2026-04-05T04:03:41,530 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T04:03:41,531 ******************************************************************************** 2026-04-05T04:03:41,532 !! 2026-04-05T04:03:41,532 corresp(dist, value, root_dir) 2026-04-05T04:03:41,808 running egg_info 2026-04-05T04:03:41,814 writing omicverse.egg-info/PKG-INFO 2026-04-05T04:03:41,834 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-04-05T04:03:41,836 writing entry points to omicverse.egg-info/entry_points.txt 2026-04-05T04:03:41,847 writing requirements to omicverse.egg-info/requires.txt 2026-04-05T04:03:41,849 writing top-level names to omicverse.egg-info/top_level.txt 2026-04-05T04:03:42,098 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-05T04:03:42,163 reading manifest template 'MANIFEST.in' 2026-04-05T04:03:43,134 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-05T04:03:44,489 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-05T04:03:44,945 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-05T04:03:49,042 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-05T04:03:49,503 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-05T04:03:50,015 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-05T04:03:50,458 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-05T04:03:50,934 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-05T04:03:51,368 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-05T04:03:51,827 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-05T04:03:51,830 no previously-included directories found matching '.git' 2026-04-05T04:03:51,833 no previously-included directories found matching '.github' 2026-04-05T04:03:51,837 no previously-included directories found matching '.claude' 2026-04-05T04:03:51,840 no previously-included directories found matching '.pytest_cache' 2026-04-05T04:03:51,843 no previously-included directories found matching '.ruff_cache' 2026-04-05T04:03:51,846 no previously-included directories found matching '.vscode' 2026-04-05T04:03:51,849 no previously-included directories found matching 'docs' 2026-04-05T04:03:51,852 no previously-included directories found matching 'tests' 2026-04-05T04:03:51,855 no previously-included directories found matching 'OvIntelligence' 2026-04-05T04:03:51,858 no previously-included directories found matching 'READMEM' 2026-04-05T04:03:51,861 no previously-included directories found matching 'omicverse_guide' 2026-04-05T04:03:51,864 no previously-included directories found matching 'omicverse_web' 2026-04-05T04:03:51,867 no previously-included directories found matching 'tmp' 2026-04-05T04:03:51,870 no previously-included directories found matching 'tmp_omicverse' 2026-04-05T04:03:51,873 no previously-included directories found matching 'Skill_Seekers' 2026-04-05T04:03:51,879 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T04:03:51,887 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T04:03:51,894 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T04:03:51,894 adding license file 'LICENSE' 2026-04-05T04:03:51,971 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-05T04:03:52,086 Getting requirements to build wheel: finished with status 'done' 2026-04-05T04:03:52,089 Created temporary directory: /tmp/pip-modern-metadata-qangfkd4 2026-04-05T04:03:52,091 Preparing metadata (pyproject.toml): started 2026-04-05T04:03:52,093 Running command Preparing metadata (pyproject.toml) 2026-04-05T04:03:52,733 /tmp/pip-build-env-kafbcv9d/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-05T04:03:52,734 !! 2026-04-05T04:03:52,735 ******************************************************************************** 2026-04-05T04:03:52,735 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-05T04:03:52,736 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-05T04:03:52,737 or your builds will no longer be supported. 2026-04-05T04:03:52,738 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T04:03:52,738 ******************************************************************************** 2026-04-05T04:03:52,739 !! 2026-04-05T04:03:52,740 corresp(dist, value, root_dir) 2026-04-05T04:03:53,020 running dist_info 2026-04-05T04:03:53,031 creating /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info 2026-04-05T04:03:53,032 writing /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/PKG-INFO 2026-04-05T04:03:53,054 writing dependency_links to /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/dependency_links.txt 2026-04-05T04:03:53,056 writing entry points to /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/entry_points.txt 2026-04-05T04:03:53,067 writing requirements to /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/requires.txt 2026-04-05T04:03:53,068 writing top-level names to /tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/top_level.txt 2026-04-05T04:03:53,070 writing manifest file '/tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/SOURCES.txt' 2026-04-05T04:03:53,281 reading manifest file '/tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/SOURCES.txt' 2026-04-05T04:03:53,283 reading manifest template 'MANIFEST.in' 2026-04-05T04:03:54,733 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-05T04:03:56,130 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-05T04:03:56,608 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-05T04:04:00,750 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-05T04:04:01,539 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-05T04:04:01,982 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-05T04:04:02,445 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-05T04:04:02,884 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-05T04:04:03,346 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-05T04:04:03,789 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-05T04:04:03,791 no previously-included directories found matching '.git' 2026-04-05T04:04:03,794 no previously-included directories found matching '.github' 2026-04-05T04:04:03,796 no previously-included directories found matching '.claude' 2026-04-05T04:04:03,799 no previously-included directories found matching '.pytest_cache' 2026-04-05T04:04:03,802 no previously-included directories found matching '.ruff_cache' 2026-04-05T04:04:03,806 no previously-included directories found matching '.vscode' 2026-04-05T04:04:03,809 no previously-included directories found matching 'docs' 2026-04-05T04:04:03,813 no previously-included directories found matching 'tests' 2026-04-05T04:04:03,816 no previously-included directories found matching 'OvIntelligence' 2026-04-05T04:04:03,819 no previously-included directories found matching 'READMEM' 2026-04-05T04:04:03,823 no previously-included directories found matching 'omicverse_guide' 2026-04-05T04:04:03,826 no previously-included directories found matching 'omicverse_web' 2026-04-05T04:04:03,830 no previously-included directories found matching 'tmp' 2026-04-05T04:04:03,833 no previously-included directories found matching 'tmp_omicverse' 2026-04-05T04:04:03,838 no previously-included directories found matching 'Skill_Seekers' 2026-04-05T04:04:03,844 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T04:04:03,854 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T04:04:03,859 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T04:04:03,859 adding license file 'LICENSE' 2026-04-05T04:04:03,931 writing manifest file '/tmp/pip-modern-metadata-qangfkd4/omicverse.egg-info/SOURCES.txt' 2026-04-05T04:04:03,934 creating '/tmp/pip-modern-metadata-qangfkd4/omicverse-2.1.1.dist-info' 2026-04-05T04:04:04,079 Preparing metadata (pyproject.toml): finished with status 'done' 2026-04-05T04:04:04,093 Source in /tmp/pip-wheel-u_6q4tgb/omicverse_188e9eb165e849539289a8237a676df2 has version 2.1.1, which satisfies requirement omicverse==2.1.1 from https://files.pythonhosted.org/packages/57/65/62a0e2461f6a98da138d1e44e46c1f243d3a2265cb0df36b2d83b2125ee2/omicverse-2.1.1.tar.gz 2026-04-05T04:04:04,094 Removed omicverse==2.1.1 from https://files.pythonhosted.org/packages/57/65/62a0e2461f6a98da138d1e44e46c1f243d3a2265cb0df36b2d83b2125ee2/omicverse-2.1.1.tar.gz from build tracker '/tmp/pip-build-tracker-e_h4bvxf' 2026-04-05T04:04:04,120 Created temporary directory: /tmp/pip-unpack-x7mdn5do 2026-04-05T04:04:04,120 Building wheels for collected packages: omicverse 2026-04-05T04:04:04,125 Created temporary directory: /tmp/pip-wheel-uldtzc6f 2026-04-05T04:04:04,126 Destination directory: /tmp/pip-wheel-uldtzc6f 2026-04-05T04:04:04,128 Building wheel for omicverse (pyproject.toml): started 2026-04-05T04:04:04,129 Running command Building wheel for omicverse (pyproject.toml) 2026-04-05T04:04:04,757 /tmp/pip-build-env-kafbcv9d/overlay/local/lib/python3.11/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated 2026-04-05T04:04:04,757 !! 2026-04-05T04:04:04,758 ******************************************************************************** 2026-04-05T04:04:04,759 Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). 2026-04-05T04:04:04,760 By 2027-Feb-18, you need to update your project and remove deprecated calls 2026-04-05T04:04:04,760 or your builds will no longer be supported. 2026-04-05T04:04:04,762 See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. 2026-04-05T04:04:04,762 ******************************************************************************** 2026-04-05T04:04:04,764 !! 2026-04-05T04:04:04,764 corresp(dist, value, root_dir) 2026-04-05T04:04:05,028 running bdist_wheel 2026-04-05T04:04:05,047 running build 2026-04-05T04:04:05,048 running build_py 2026-04-05T04:04:05,054 creating build/lib/omicverse 2026-04-05T04:04:05,056 copying omicverse/_monitor.py -> build/lib/omicverse 2026-04-05T04:04:05,059 copying omicverse/__init__.py -> build/lib/omicverse 2026-04-05T04:04:05,061 copying omicverse/claw.py -> build/lib/omicverse 2026-04-05T04:04:05,064 copying omicverse/_settings.py -> build/lib/omicverse 2026-04-05T04:04:05,067 copying omicverse/_lazy_loader.py -> build/lib/omicverse 2026-04-05T04:04:05,069 copying omicverse/_optional.py -> build/lib/omicverse 2026-04-05T04:04:05,071 copying omicverse/cli.py -> build/lib/omicverse 2026-04-05T04:04:05,073 copying omicverse/_registry.py -> build/lib/omicverse 2026-04-05T04:04:05,077 creating build/lib/omicverse/mcp 2026-04-05T04:04:05,078 copying omicverse/mcp/session_store.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,081 copying omicverse/mcp/overrides.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,083 copying omicverse/mcp/class_specs.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,085 copying omicverse/mcp/__init__.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,087 copying omicverse/mcp/manifest.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,090 copying omicverse/mcp/schema.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,092 copying omicverse/mcp/executor.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,094 copying omicverse/mcp/naming.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,096 copying omicverse/mcp/server.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,100 copying omicverse/mcp/adata_kernel_runtime.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,102 copying omicverse/mcp/__main__.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,104 copying omicverse/mcp/local_oauth.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,106 copying omicverse/mcp/availability.py -> build/lib/omicverse/mcp 2026-04-05T04:04:05,109 creating build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,110 copying omicverse/ov_skill_seeker/pdf_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,111 copying omicverse/ov_skill_seeker/__init__.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,113 copying omicverse/ov_skill_seeker/docs_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,115 copying omicverse/ov_skill_seeker/security.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,118 copying omicverse/ov_skill_seeker/config_validator.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,119 copying omicverse/ov_skill_seeker/link_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,122 copying omicverse/ov_skill_seeker/unified_builder.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,124 copying omicverse/ov_skill_seeker/cli.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,126 copying omicverse/ov_skill_seeker/github_scraper.py -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:05,128 creating build/lib/omicverse/external 2026-04-05T04:04:05,130 copying omicverse/external/__init__.py -> build/lib/omicverse/external 2026-04-05T04:04:05,132 creating build/lib/omicverse/agent 2026-04-05T04:04:05,133 copying omicverse/agent/__init__.py -> build/lib/omicverse/agent 2026-04-05T04:04:05,136 creating build/lib/omicverse/datasets 2026-04-05T04:04:05,137 copying omicverse/datasets/_signatures.py -> build/lib/omicverse/datasets 2026-04-05T04:04:05,139 copying omicverse/datasets/__init__.py -> build/lib/omicverse/datasets 2026-04-05T04:04:05,141 copying omicverse/datasets/_datasets.py -> build/lib/omicverse/datasets 2026-04-05T04:04:05,145 creating build/lib/omicverse/bulk2single 2026-04-05T04:04:05,146 copying omicverse/bulk2single/_single2spatial.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,149 copying omicverse/bulk2single/_map_utils1.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,152 copying omicverse/bulk2single/_vae.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,155 copying omicverse/bulk2single/_utils.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,157 copying omicverse/bulk2single/_bulktrajblend.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,160 copying omicverse/bulk2single/__init__.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,161 copying omicverse/bulk2single/_bulkdeconvolve.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,163 copying omicverse/bulk2single/_bulk2single.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,166 copying omicverse/bulk2single/_scsemi.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,168 copying omicverse/bulk2single/_map_utils.py -> build/lib/omicverse/bulk2single 2026-04-05T04:04:05,173 creating build/lib/omicverse/utils 2026-04-05T04:04:05,174 copying omicverse/utils/_venn.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,176 copying omicverse/utils/skill_registry.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,178 copying omicverse/utils/session_notebook_executor.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,181 copying omicverse/utils/_data.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,184 copying omicverse/utils/agent_backend_gemini.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,186 copying omicverse/utils/__init__.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,189 copying omicverse/utils/agent_sandbox.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,191 copying omicverse/utils/_syn.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,193 copying omicverse/utils/_roe.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,196 copying omicverse/utils/smart_agent.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,199 copying omicverse/utils/_enum.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,200 copying omicverse/utils/registry.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,202 copying omicverse/utils/agent_backend_dashscope.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,204 copying omicverse/utils/_lsi.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,206 copying omicverse/utils/agent_backend_streaming.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,208 copying omicverse/utils/agent_reporter.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,210 copying omicverse/utils/_mde.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,212 copying omicverse/utils/agent_backend_anthropic.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,215 copying omicverse/utils/_cluster.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,217 copying omicverse/utils/model_config.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,220 copying omicverse/utils/_scice.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,223 copying omicverse/utils/context_compactor.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,225 copying omicverse/utils/session_history.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,227 copying omicverse/utils/agent_backend_common.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,230 copying omicverse/utils/_neighboors.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,232 copying omicverse/utils/_heatmap.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,235 copying omicverse/utils/filesystem_context.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,238 copying omicverse/utils/_odds_ratio.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,240 copying omicverse/utils/_analytics_sender.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,243 copying omicverse/utils/_genomics.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,245 copying omicverse/utils/_plot.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,247 copying omicverse/utils/agent_config.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,250 copying omicverse/utils/agent_backend.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,253 copying omicverse/utils/_anndata_rust_patch.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,256 copying omicverse/utils/_gene_id_conversion.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,258 copying omicverse/utils/_resolution.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,261 copying omicverse/utils/_paga.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,263 copying omicverse/utils/_shannon_diversity.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,266 copying omicverse/utils/_ovagent_lookup.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,268 copying omicverse/utils/agent_errors.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,270 copying omicverse/utils/agent_backend_openai.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,273 copying omicverse/utils/_knn.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,275 copying omicverse/utils/_scatterplot.py -> build/lib/omicverse/utils 2026-04-05T04:04:05,278 creating build/lib/omicverse/llm 2026-04-05T04:04:05,279 copying omicverse/llm/external_model_stubs.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,281 copying omicverse/llm/scmulan_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,283 copying omicverse/llm/uce_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,287 copying omicverse/llm/__init__.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,289 copying omicverse/llm/base.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,291 copying omicverse/llm/model_download.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,294 copying omicverse/llm/model_factory.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,297 copying omicverse/llm/cellplm_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,301 copying omicverse/llm/resource_utils.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,303 copying omicverse/llm/scfoundation_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,307 copying omicverse/llm/scgpt_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,311 copying omicverse/llm/geneformer_model.py -> build/lib/omicverse/llm 2026-04-05T04:04:05,317 creating build/lib/omicverse/single 2026-04-05T04:04:05,318 copying omicverse/single/_multimap.py -> build/lib/omicverse/single 2026-04-05T04:04:05,323 copying omicverse/single/_cpdb.py -> build/lib/omicverse/single 2026-04-05T04:04:05,325 copying omicverse/single/_lazy_report.py -> build/lib/omicverse/single 2026-04-05T04:04:05,328 copying omicverse/single/_tosica.py -> build/lib/omicverse/single 2026-04-05T04:04:05,330 copying omicverse/single/_metacell.py -> build/lib/omicverse/single 2026-04-05T04:04:05,333 copying omicverse/single/_cellfategenie.py -> build/lib/omicverse/single 2026-04-05T04:04:05,336 copying omicverse/single/_deg_ct.py -> build/lib/omicverse/single 2026-04-05T04:04:05,338 copying omicverse/single/_nocd.py -> build/lib/omicverse/single 2026-04-05T04:04:05,341 copying omicverse/single/__init__.py -> build/lib/omicverse/single 2026-04-05T04:04:05,343 copying omicverse/single/_annotation.py -> build/lib/omicverse/single 2026-04-05T04:04:05,346 copying omicverse/single/_annotation_ref.py -> build/lib/omicverse/single 2026-04-05T04:04:05,348 copying omicverse/single/_cellmatch.py -> build/lib/omicverse/single 2026-04-05T04:04:05,353 copying omicverse/single/_scgsea.py -> build/lib/omicverse/single 2026-04-05T04:04:05,356 copying omicverse/single/_cefcon.py -> build/lib/omicverse/single 2026-04-05T04:04:05,358 copying omicverse/single/_aucell.py -> build/lib/omicverse/single 2026-04-05T04:04:05,361 copying omicverse/single/_simba.py -> build/lib/omicverse/single 2026-04-05T04:04:05,363 copying omicverse/single/_ltnn.py -> build/lib/omicverse/single 2026-04-05T04:04:05,366 copying omicverse/single/_cnmf.py -> build/lib/omicverse/single 2026-04-05T04:04:05,368 copying omicverse/single/_mdic3.py -> build/lib/omicverse/single 2026-04-05T04:04:05,370 copying omicverse/single/_cellvote.py -> build/lib/omicverse/single 2026-04-05T04:04:05,373 copying omicverse/single/_lazy_function.py -> build/lib/omicverse/single 2026-04-05T04:04:05,375 copying omicverse/single/_velo.py -> build/lib/omicverse/single 2026-04-05T04:04:05,378 copying omicverse/single/_mofa.py -> build/lib/omicverse/single 2026-04-05T04:04:05,386 copying omicverse/single/_milo_dev.py -> build/lib/omicverse/single 2026-04-05T04:04:05,389 copying omicverse/single/_anno.py -> build/lib/omicverse/single 2026-04-05T04:04:05,392 copying omicverse/single/_via.py -> build/lib/omicverse/single 2026-04-05T04:04:05,395 copying omicverse/single/_markers.py -> build/lib/omicverse/single 2026-04-05T04:04:05,398 copying omicverse/single/_batch.py -> build/lib/omicverse/single 2026-04-05T04:04:05,400 copying omicverse/single/_lazy_checkpoint.py -> build/lib/omicverse/single 2026-04-05T04:04:05,403 copying omicverse/single/_lazy_step_by_step.py -> build/lib/omicverse/single 2026-04-05T04:04:05,405 copying omicverse/single/_SCSA.py -> build/lib/omicverse/single 2026-04-05T04:04:05,408 copying omicverse/single/_pyslingshot.py -> build/lib/omicverse/single 2026-04-05T04:04:05,411 copying omicverse/single/_cytotrace2.py -> build/lib/omicverse/single 2026-04-05T04:04:05,414 copying omicverse/single/_diffusionmap.py -> build/lib/omicverse/single 2026-04-05T04:04:05,416 copying omicverse/single/_traj.py -> build/lib/omicverse/single 2026-04-05T04:04:05,418 copying omicverse/single/_gptcelltype.py -> build/lib/omicverse/single 2026-04-05T04:04:05,421 copying omicverse/single/_atac.py -> build/lib/omicverse/single 2026-04-05T04:04:05,423 copying omicverse/single/_scenic.py -> build/lib/omicverse/single 2026-04-05T04:04:05,426 copying omicverse/single/_gptcelltype_local.py -> build/lib/omicverse/single 2026-04-05T04:04:05,428 copying omicverse/single/_sccaf.py -> build/lib/omicverse/single 2026-04-05T04:04:05,431 copying omicverse/single/_cosg.py -> build/lib/omicverse/single 2026-04-05T04:04:05,433 copying omicverse/single/_scannorl.py -> build/lib/omicverse/single 2026-04-05T04:04:05,436 copying omicverse/single/_scdrug.py -> build/lib/omicverse/single 2026-04-05T04:04:05,438 copying omicverse/single/_scdiffusion.py -> build/lib/omicverse/single 2026-04-05T04:04:05,442 creating build/lib/omicverse/alignment 2026-04-05T04:04:05,443 copying omicverse/alignment/pipeline.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,446 copying omicverse/alignment/prefetch.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,448 copying omicverse/alignment/__init__.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,450 copying omicverse/alignment/_cli_utils.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,452 copying omicverse/alignment/fq_dump.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,454 copying omicverse/alignment/featureCount.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,457 copying omicverse/alignment/fastp.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,459 copying omicverse/alignment/STAR.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,461 copying omicverse/alignment/kb_api.py -> build/lib/omicverse/alignment 2026-04-05T04:04:05,465 creating build/lib/omicverse/io 2026-04-05T04:04:05,466 copying omicverse/io/__init__.py -> build/lib/omicverse/io 2026-04-05T04:04:05,469 creating build/lib/omicverse/pl 2026-04-05T04:04:05,469 copying omicverse/pl/_cpdb.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,473 copying omicverse/pl/_cpdbviz_plus.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,478 copying omicverse/pl/_nanostring.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,481 copying omicverse/pl/_space.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,484 copying omicverse/pl/__init__.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,486 copying omicverse/pl/_flowsig.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,489 copying omicverse/pl/_venn_backend.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,491 copying omicverse/pl/_multi.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,493 copying omicverse/pl/_dotplot.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,496 copying omicverse/pl/_cpdbviz.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,501 copying omicverse/pl/_plot_backend.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,504 copying omicverse/pl/_violin.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,507 copying omicverse/pl/_spatialseg.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,510 copying omicverse/pl/_spatial.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,513 copying omicverse/pl/_single.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,516 copying omicverse/pl/_general.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,518 copying omicverse/pl/_density.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,520 copying omicverse/pl/_scanpy_compat.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,522 copying omicverse/pl/_heatmap.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,525 copying omicverse/pl/_ccc.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,529 copying omicverse/pl/_palette.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,533 copying omicverse/pl/_embedding.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,535 copying omicverse/pl/_bulk.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,538 copying omicverse/pl/_animation_lines.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,541 copying omicverse/pl/_forbidden.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,544 copying omicverse/pl/_scatterplot_backend.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,548 copying omicverse/pl/_heatmap_marsilea.py -> build/lib/omicverse/pl 2026-04-05T04:04:05,553 creating build/lib/omicverse/pp 2026-04-05T04:04:05,554 copying omicverse/pp/pyg_knn_implementation.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,556 copying omicverse/pp/_qc.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,560 copying omicverse/pp/_utils.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,562 copying omicverse/pp/_compat.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,565 copying omicverse/pp/__init__.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,566 copying omicverse/pp/_tsne.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,569 copying omicverse/pp/_leiden_pyg.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,571 copying omicverse/pp/_sccomposite.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,574 copying omicverse/pp/_highly_variable_genes.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,577 copying omicverse/pp/_connectivity.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,579 copying omicverse/pp/_recover.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,581 copying omicverse/pp/_scale.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,584 copying omicverse/pp/_preprocess.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,588 copying omicverse/pp/_normalization.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,590 copying omicverse/pp/_leiden_test.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,593 copying omicverse/pp/_pca.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,597 copying omicverse/pp/_leiden.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,600 copying omicverse/pp/_umap.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,602 copying omicverse/pp/_pca_mlx.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,606 copying omicverse/pp/_sude.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,608 copying omicverse/pp/_distributed.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,610 copying omicverse/pp/_scrublet.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,614 copying omicverse/pp/_neighbors.py -> build/lib/omicverse/pp 2026-04-05T04:04:05,618 creating build/lib/omicverse/bulk 2026-04-05T04:04:05,619 copying omicverse/bulk/_Deseq2.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,622 copying omicverse/bulk/__init__.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,624 copying omicverse/bulk/_df_apply.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,626 copying omicverse/bulk/_network.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,628 copying omicverse/bulk/_decov.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,631 copying omicverse/bulk/_combat.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,633 copying omicverse/bulk/_Gene_module.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,635 copying omicverse/bulk/_Enrichment.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,638 copying omicverse/bulk/_dynamicTree.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,642 copying omicverse/bulk/_tcga.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,644 copying omicverse/bulk/_chm13.py -> build/lib/omicverse/bulk 2026-04-05T04:04:05,670 creating build/lib/omicverse/fm 2026-04-05T04:04:05,671 copying omicverse/fm/__init__.py -> build/lib/omicverse/fm 2026-04-05T04:04:05,673 copying omicverse/fm/registry.py -> build/lib/omicverse/fm 2026-04-05T04:04:05,676 copying omicverse/fm/api.py -> build/lib/omicverse/fm 2026-04-05T04:04:05,680 copying omicverse/fm/_conda_runner.py -> build/lib/omicverse/fm 2026-04-05T04:04:05,682 copying omicverse/fm/router.py -> build/lib/omicverse/fm 2026-04-05T04:04:05,686 creating build/lib/omicverse/jarvis 2026-04-05T04:04:05,687 copying omicverse/jarvis/agent_bridge.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,689 copying omicverse/jarvis/openai_oauth.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,692 copying omicverse/jarvis/__init__.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,693 copying omicverse/jarvis/model_help.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,696 copying omicverse/jarvis/config.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,697 copying omicverse/jarvis/model_registry.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,700 copying omicverse/jarvis/session.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,703 copying omicverse/jarvis/_bridge_session.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,704 copying omicverse/jarvis/_fmt.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,707 copying omicverse/jarvis/gemini_cli_oauth.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,709 copying omicverse/jarvis/cli.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,712 copying omicverse/jarvis/media_ingest.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,714 copying omicverse/jarvis/setup_wizard.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,717 copying omicverse/jarvis/channel_media.py -> build/lib/omicverse/jarvis 2026-04-05T04:04:05,720 creating build/lib/omicverse/space 2026-04-05T04:04:05,721 copying omicverse/space/_spatrio.py -> build/lib/omicverse/space 2026-04-05T04:04:05,724 copying omicverse/space/_spaceflow.py -> build/lib/omicverse/space 2026-04-05T04:04:05,726 copying omicverse/space/__init__.py -> build/lib/omicverse/space 2026-04-05T04:04:05,728 copying omicverse/space/_stt.py -> build/lib/omicverse/space 2026-04-05T04:04:05,731 copying omicverse/space/_cast.py -> build/lib/omicverse/space 2026-04-05T04:04:05,732 copying omicverse/space/_tangram.py -> build/lib/omicverse/space 2026-04-05T04:04:05,735 copying omicverse/space/_cluster.py -> build/lib/omicverse/space 2026-04-05T04:04:05,738 copying omicverse/space/_starfysh.py -> build/lib/omicverse/space 2026-04-05T04:04:05,740 copying omicverse/space/_svg.py -> build/lib/omicverse/space 2026-04-05T04:04:05,743 copying omicverse/space/_deconvolution.py -> build/lib/omicverse/space 2026-04-05T04:04:05,745 copying omicverse/space/_integrate.py -> build/lib/omicverse/space 2026-04-05T04:04:05,748 copying omicverse/space/_tools.py -> build/lib/omicverse/space 2026-04-05T04:04:05,752 copying omicverse/space/_gaston.py -> build/lib/omicverse/space 2026-04-05T04:04:05,755 copying omicverse/space/_commot.py -> build/lib/omicverse/space 2026-04-05T04:04:05,758 creating build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,759 copying omicverse/mcp/adapters/function_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,761 copying omicverse/mcp/adapters/__init__.py -> build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,763 copying omicverse/mcp/adapters/base.py -> build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,765 copying omicverse/mcp/adapters/class_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,768 copying omicverse/mcp/adapters/adata_adapter.py -> build/lib/omicverse/mcp/adapters 2026-04-05T04:04:05,771 creating build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,772 copying omicverse/external/SEACells/genescores.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,774 copying omicverse/external/SEACells/__init__.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,776 copying omicverse/external/SEACells/tfactivity.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,778 copying omicverse/external/SEACells/evaluate.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,780 copying omicverse/external/SEACells/version.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,782 copying omicverse/external/SEACells/plot.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,784 copying omicverse/external/SEACells/cpu_dense.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,786 copying omicverse/external/SEACells/cpu.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,789 copying omicverse/external/SEACells/accessibility.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,791 copying omicverse/external/SEACells/build_graph.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,793 copying omicverse/external/SEACells/gpu.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,796 copying omicverse/external/SEACells/domainadapt.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,798 copying omicverse/external/SEACells/core.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,800 copying omicverse/external/SEACells/preprocess.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,802 copying omicverse/external/SEACells/utils.py -> build/lib/omicverse/external/SEACells 2026-04-05T04:04:05,804 creating build/lib/omicverse/external/cytotrace2 2026-04-05T04:04:05,805 copying omicverse/external/cytotrace2/smoothDatakNN.py -> build/lib/omicverse/external/cytotrace2 2026-04-05T04:04:05,807 copying omicverse/external/cytotrace2/gen_utils.py -> build/lib/omicverse/external/cytotrace2 2026-04-05T04:04:05,810 copying omicverse/external/cytotrace2/models.py -> build/lib/omicverse/external/cytotrace2 2026-04-05T04:04:05,812 creating build/lib/omicverse/external/scanorama 2026-04-05T04:04:05,813 copying omicverse/external/scanorama/__init__.py -> build/lib/omicverse/external/scanorama 2026-04-05T04:04:05,814 copying omicverse/external/scanorama/scanorama.py -> build/lib/omicverse/external/scanorama 2026-04-05T04:04:05,817 copying omicverse/external/scanorama/utils.py -> build/lib/omicverse/external/scanorama 2026-04-05T04:04:05,820 creating build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,821 copying omicverse/external/pyscenic/plotting.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,823 copying omicverse/external/pyscenic/_version.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,826 copying omicverse/external/pyscenic/export.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,828 copying omicverse/external/pyscenic/log.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,830 copying omicverse/external/pyscenic/diptest.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,832 copying omicverse/external/pyscenic/featureseq.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,834 copying omicverse/external/pyscenic/rss.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,836 copying omicverse/external/pyscenic/prune.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,839 copying omicverse/external/pyscenic/transform.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,842 copying omicverse/external/pyscenic/binarization.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,844 copying omicverse/external/pyscenic/math.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,846 copying omicverse/external/pyscenic/utils.py -> build/lib/omicverse/external/pyscenic 2026-04-05T04:04:05,849 creating build/lib/omicverse/external/somde 2026-04-05T04:04:05,850 copying omicverse/external/somde/__init__.py -> build/lib/omicverse/external/somde 2026-04-05T04:04:05,852 copying omicverse/external/somde/util.py -> build/lib/omicverse/external/somde 2026-04-05T04:04:05,855 copying omicverse/external/somde/som.py -> build/lib/omicverse/external/somde 2026-04-05T04:04:05,857 creating build/lib/omicverse/external/popv 2026-04-05T04:04:05,858 copying omicverse/external/popv/_utils.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,860 copying omicverse/external/popv/__init__.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,862 copying omicverse/external/popv/_settings.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,864 copying omicverse/external/popv/visualization.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,866 copying omicverse/external/popv/annotation.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,869 copying omicverse/external/popv/preprocessing.py -> build/lib/omicverse/external/popv 2026-04-05T04:04:05,872 creating build/lib/omicverse/external/cellanova 2026-04-05T04:04:05,872 copying omicverse/external/cellanova/__init__.py -> build/lib/omicverse/external/cellanova 2026-04-05T04:04:05,874 copying omicverse/external/cellanova/model.py -> build/lib/omicverse/external/cellanova 2026-04-05T04:04:05,877 copying omicverse/external/cellanova/utils.py -> build/lib/omicverse/external/cellanova 2026-04-05T04:04:05,879 creating build/lib/omicverse/external/bulk2single 2026-04-05T04:04:05,880 copying omicverse/external/bulk2single/__init__.py -> build/lib/omicverse/external/bulk2single 2026-04-05T04:04:05,882 creating build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,883 copying omicverse/external/ctxcore/recovery.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,886 copying omicverse/external/ctxcore/__init__.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,887 copying omicverse/external/ctxcore/genesig.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,890 copying omicverse/external/ctxcore/rnkdb.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,892 copying omicverse/external/ctxcore/ctdb.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,895 copying omicverse/external/ctxcore/aucell.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,898 copying omicverse/external/ctxcore/datatypes.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,900 copying omicverse/external/ctxcore/binarization.py -> build/lib/omicverse/external/ctxcore 2026-04-05T04:04:05,903 creating build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,904 copying omicverse/external/latentvelo/trainer_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,907 copying omicverse/external/latentvelo/anvi_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,909 copying omicverse/external/latentvelo/trainer_atac.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,911 copying omicverse/external/latentvelo/path_regularization.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,913 copying omicverse/external/latentvelo/__init__.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,914 copying omicverse/external/latentvelo/atac_dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,916 copying omicverse/external/latentvelo/output_results.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,919 copying omicverse/external/latentvelo/collate.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,921 copying omicverse/external/latentvelo/dataloader.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,923 copying omicverse/external/latentvelo/tl.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,925 copying omicverse/external/latentvelo/pl.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,927 copying omicverse/external/latentvelo/dataloader_utils.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,929 copying omicverse/external/latentvelo/dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,931 copying omicverse/external/latentvelo/velocity_genes.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,932 copying omicverse/external/latentvelo/trainer.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,935 copying omicverse/external/latentvelo/trainer_anvi.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,937 copying omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,939 copying omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,941 copying omicverse/external/latentvelo/ev.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,943 copying omicverse/external/latentvelo/train.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,944 copying omicverse/external/latentvelo/utils.py -> build/lib/omicverse/external/latentvelo 2026-04-05T04:04:05,948 creating build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,949 copying omicverse/external/starfysh/__init__.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,951 copying omicverse/external/starfysh/plot_utils.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,953 copying omicverse/external/starfysh/dataloader.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,955 copying omicverse/external/starfysh/AA.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,958 copying omicverse/external/starfysh/gener_img.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,961 copying omicverse/external/starfysh/_starfysh.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,964 copying omicverse/external/starfysh/post_analysis.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,966 copying omicverse/external/starfysh/utils_integrate.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,968 copying omicverse/external/starfysh/utils.py -> build/lib/omicverse/external/starfysh 2026-04-05T04:04:05,972 creating build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,973 copying omicverse/external/CEFCON/CEFCON.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,975 copying omicverse/external/CEFCON/__init__.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,977 copying omicverse/external/CEFCON/cefcon_result_object.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,980 copying omicverse/external/CEFCON/_aucell.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,982 copying omicverse/external/CEFCON/cell_lineage_GRN.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,985 copying omicverse/external/CEFCON/driver_regulators.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,988 copying omicverse/external/CEFCON/datasets.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,990 copying omicverse/external/CEFCON/eval_utils.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,992 copying omicverse/external/CEFCON/utils.py -> build/lib/omicverse/external/CEFCON 2026-04-05T04:04:05,996 creating build/lib/omicverse/external/gaston 2026-04-05T04:04:05,997 copying omicverse/external/gaston/binning_and_plotting.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,000 copying omicverse/external/gaston/isodepth_scaling.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,002 copying omicverse/external/gaston/model_selection.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,004 copying omicverse/external/gaston/spatial_gene_classification.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,006 copying omicverse/external/gaston/filter_genes.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,008 copying omicverse/external/gaston/__init__.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,009 copying omicverse/external/gaston/parse_adata.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,011 copying omicverse/external/gaston/dp_related.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,013 copying omicverse/external/gaston/cluster_plotting.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,016 copying omicverse/external/gaston/run_slurm_scripts.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,017 copying omicverse/external/gaston/restrict_spots.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,019 copying omicverse/external/gaston/segmented_fit.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,021 copying omicverse/external/gaston/plot_cell_types.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,024 copying omicverse/external/gaston/process_NN_output.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,027 copying omicverse/external/gaston/neural_net.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,030 copying omicverse/external/gaston/pos_encoding.py -> build/lib/omicverse/external/gaston 2026-04-05T04:04:06,033 creating build/lib/omicverse/external/scMulan 2026-04-05T04:04:06,035 copying omicverse/external/scMulan/scMulan.py -> build/lib/omicverse/external/scMulan 2026-04-05T04:04:06,038 copying omicverse/external/scMulan/__init__.py -> build/lib/omicverse/external/scMulan 2026-04-05T04:04:06,040 copying omicverse/external/scMulan/scMulan_npu.py -> build/lib/omicverse/external/scMulan 2026-04-05T04:04:06,044 creating build/lib/omicverse/external/STT 2026-04-05T04:04:06,045 copying omicverse/external/STT/__init__.py -> build/lib/omicverse/external/STT 2026-04-05T04:04:06,049 creating build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,050 copying omicverse/external/gseapy/parser.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,054 copying omicverse/external/gseapy/__init__.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,056 copying omicverse/external/gseapy/biomart.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,059 copying omicverse/external/gseapy/stats.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,062 copying omicverse/external/gseapy/plot.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,065 copying omicverse/external/gseapy/algorithm.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,069 copying omicverse/external/gseapy/__main__.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,072 copying omicverse/external/gseapy/enrichr.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,076 copying omicverse/external/gseapy/gsea.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,081 copying omicverse/external/gseapy/utils.py -> build/lib/omicverse/external/gseapy 2026-04-05T04:04:06,085 creating build/lib/omicverse/external/spaco 2026-04-05T04:04:06,086 copying omicverse/external/spaco/mapping.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,090 copying omicverse/external/spaco/colorization.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,093 copying omicverse/external/spaco/distance.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,096 copying omicverse/external/spaco/__init__.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,099 copying omicverse/external/spaco/scm.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,101 copying omicverse/external/spaco/color.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,104 copying omicverse/external/spaco/misc.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,107 copying omicverse/external/spaco/logging.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,109 copying omicverse/external/spaco/utils.py -> build/lib/omicverse/external/spaco 2026-04-05T04:04:06,113 creating build/lib/omicverse/external/harmony 2026-04-05T04:04:06,114 copying omicverse/external/harmony/harmony.py -> build/lib/omicverse/external/harmony 2026-04-05T04:04:06,119 copying omicverse/external/harmony/lisi.py -> build/lib/omicverse/external/harmony 2026-04-05T04:04:06,121 copying omicverse/external/harmony/__init__.py -> build/lib/omicverse/external/harmony 2026-04-05T04:04:06,124 creating build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,125 copying omicverse/external/torch_pca/__init__.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,127 copying omicverse/external/torch_pca/pca_main.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,129 copying omicverse/external/torch_pca/ncompo.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,131 copying omicverse/external/torch_pca/svd.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,133 copying omicverse/external/torch_pca/sparse_utils.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,135 copying omicverse/external/torch_pca/random_svd.py -> build/lib/omicverse/external/torch_pca 2026-04-05T04:04:06,138 creating build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,139 copying omicverse/external/spatrio/spatrio.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,142 copying omicverse/external/spatrio/__init__.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,143 copying omicverse/external/spatrio/evals.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,146 copying omicverse/external/spatrio/visualization.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,147 copying omicverse/external/spatrio/simulation.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,150 copying omicverse/external/spatrio/helper.py -> build/lib/omicverse/external/spatrio 2026-04-05T04:04:06,152 creating build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,153 copying omicverse/external/NaiveDE/loom.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,155 copying omicverse/external/NaiveDE/__init__.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,157 copying omicverse/external/NaiveDE/base.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,159 copying omicverse/external/NaiveDE/cell_types.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,161 copying omicverse/external/NaiveDE/impulse.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,162 copying omicverse/external/NaiveDE/faux_fold_change.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,164 copying omicverse/external/NaiveDE/simulate.py -> build/lib/omicverse/external/NaiveDE 2026-04-05T04:04:06,167 creating build/lib/omicverse/external/BINARY 2026-04-05T04:04:06,168 copying omicverse/external/BINARY/__init__.py -> build/lib/omicverse/external/BINARY 2026-04-05T04:04:06,170 copying omicverse/external/BINARY/Model.py -> build/lib/omicverse/external/BINARY 2026-04-05T04:04:06,172 copying omicverse/external/BINARY/Train_BINARY.py -> build/lib/omicverse/external/BINARY 2026-04-05T04:04:06,174 copying omicverse/external/BINARY/utils.py -> build/lib/omicverse/external/BINARY 2026-04-05T04:04:06,176 creating build/lib/omicverse/external/commot 2026-04-05T04:04:06,177 copying omicverse/external/commot/__init__.py -> build/lib/omicverse/external/commot 2026-04-05T04:04:06,180 creating build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,181 copying omicverse/external/pyensembl/exon.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,183 copying omicverse/external/pyensembl/ensembl_versions.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,185 copying omicverse/external/pyensembl/sequence_data.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,188 copying omicverse/external/pyensembl/__init__.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,190 copying omicverse/external/pyensembl/locus.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,192 copying omicverse/external/pyensembl/version.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,193 copying omicverse/external/pyensembl/locus_with_genome.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,195 copying omicverse/external/pyensembl/download_cache.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,197 copying omicverse/external/pyensembl/serializable.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,200 copying omicverse/external/pyensembl/genome.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,204 copying omicverse/external/pyensembl/database.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,206 copying omicverse/external/pyensembl/normalization.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,208 copying omicverse/external/pyensembl/common.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,210 copying omicverse/external/pyensembl/ensembl_url_templates.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,212 copying omicverse/external/pyensembl/gene.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,213 copying omicverse/external/pyensembl/species.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,216 copying omicverse/external/pyensembl/search.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,217 copying omicverse/external/pyensembl/reference_name.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,219 copying omicverse/external/pyensembl/shell.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,222 copying omicverse/external/pyensembl/ensembl_release.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,224 copying omicverse/external/pyensembl/fasta.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,226 copying omicverse/external/pyensembl/transcript.py -> build/lib/omicverse/external/pyensembl 2026-04-05T04:04:06,229 creating build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,230 copying omicverse/external/PyWGCNA/__init__.py -> build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,232 copying omicverse/external/PyWGCNA/comparison.py -> build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,235 copying omicverse/external/PyWGCNA/geneExp.py -> build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,237 copying omicverse/external/PyWGCNA/wgcna.py -> build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,243 copying omicverse/external/PyWGCNA/utils.py -> build/lib/omicverse/external/PyWGCNA 2026-04-05T04:04:06,246 creating build/lib/omicverse/external/tosica 2026-04-05T04:04:06,247 copying omicverse/external/tosica/customized_linear.py -> build/lib/omicverse/external/tosica 2026-04-05T04:04:06,250 copying omicverse/external/tosica/__init__.py -> build/lib/omicverse/external/tosica 2026-04-05T04:04:06,251 copying omicverse/external/tosica/TOSICA_model.py -> build/lib/omicverse/external/tosica 2026-04-05T04:04:06,254 copying omicverse/external/tosica/pre.py -> build/lib/omicverse/external/tosica 2026-04-05T04:04:06,256 copying omicverse/external/tosica/train.py -> build/lib/omicverse/external/tosica 2026-04-05T04:04:06,259 creating build/lib/omicverse/external/nocd 2026-04-05T04:04:06,260 copying omicverse/external/nocd/__init__.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,262 copying omicverse/external/nocd/data.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,264 copying omicverse/external/nocd/sampler.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,266 copying omicverse/external/nocd/generate.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,268 copying omicverse/external/nocd/train.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,270 copying omicverse/external/nocd/utils.py -> build/lib/omicverse/external/nocd 2026-04-05T04:04:06,273 creating build/lib/omicverse/external/mpl_chord 2026-04-05T04:04:06,274 copying omicverse/external/mpl_chord/gradient.py -> build/lib/omicverse/external/mpl_chord 2026-04-05T04:04:06,276 copying omicverse/external/mpl_chord/utilities.py -> build/lib/omicverse/external/mpl_chord 2026-04-05T04:04:06,278 copying omicverse/external/mpl_chord/chord_diagram.py -> build/lib/omicverse/external/mpl_chord 2026-04-05T04:04:06,281 creating build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,282 copying omicverse/external/sude_py/__init__.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,284 copying omicverse/external/sude_py/plotcluster2.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,286 copying omicverse/external/sude_py/init_pca.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,288 copying omicverse/external/sude_py/opt_scale.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,291 copying omicverse/external/sude_py/clle.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,293 copying omicverse/external/sude_py/pca.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,295 copying omicverse/external/sude_py/sude.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,298 copying omicverse/external/sude_py/mds.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,300 copying omicverse/external/sude_py/learning_s.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,302 copying omicverse/external/sude_py/learning_l.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,305 copying omicverse/external/sude_py/pps.py -> build/lib/omicverse/external/sude_py 2026-04-05T04:04:06,308 creating build/lib/omicverse/external/tape 2026-04-05T04:04:06,309 copying omicverse/external/tape/__init__.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,311 copying omicverse/external/tape/deconvolution.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,314 copying omicverse/external/tape/model.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,316 copying omicverse/external/tape/simulation.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,319 copying omicverse/external/tape/train.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,321 copying omicverse/external/tape/utils.py -> build/lib/omicverse/external/tape 2026-04-05T04:04:06,324 creating build/lib/omicverse/external/datacollect 2026-04-05T04:04:06,326 copying omicverse/external/datacollect/__init__.py -> build/lib/omicverse/external/datacollect 2026-04-05T04:04:06,328 copying omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/lib/omicverse/external/datacollect 2026-04-05T04:04:06,331 copying omicverse/external/datacollect/cli.py -> build/lib/omicverse/external/datacollect 2026-04-05T04:04:06,335 creating build/lib/omicverse/external/flowsig 2026-04-05T04:04:06,336 copying omicverse/external/flowsig/__init__.py -> build/lib/omicverse/external/flowsig 2026-04-05T04:04:06,339 creating build/lib/omicverse/external/GNTD 2026-04-05T04:04:06,341 copying omicverse/external/GNTD/_utils.py -> build/lib/omicverse/external/GNTD 2026-04-05T04:04:06,343 copying omicverse/external/GNTD/_GNTD.py -> build/lib/omicverse/external/GNTD 2026-04-05T04:04:06,346 copying omicverse/external/GNTD/_NTD.py -> build/lib/omicverse/external/GNTD 2026-04-05T04:04:06,348 copying omicverse/external/GNTD/_preprocessing.py -> build/lib/omicverse/external/GNTD 2026-04-05T04:04:06,352 creating build/lib/omicverse/external/palantir 2026-04-05T04:04:06,353 copying omicverse/external/palantir/__init__.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,356 copying omicverse/external/palantir/config.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,358 copying omicverse/external/palantir/presults.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,361 copying omicverse/external/palantir/plot_utils.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,364 copying omicverse/external/palantir/version.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,366 copying omicverse/external/palantir/plot.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,370 copying omicverse/external/palantir/io.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,373 copying omicverse/external/palantir/validation.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,376 copying omicverse/external/palantir/core.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,379 copying omicverse/external/palantir/preprocess.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,381 copying omicverse/external/palantir/utils.py -> build/lib/omicverse/external/palantir 2026-04-05T04:04:06,386 creating build/lib/omicverse/external/scdiffusion 2026-04-05T04:04:06,387 copying omicverse/external/scdiffusion/classifier_train.py -> build/lib/omicverse/external/scdiffusion 2026-04-05T04:04:06,390 copying omicverse/external/scdiffusion/cell_sample.py -> build/lib/omicverse/external/scdiffusion 2026-04-05T04:04:06,392 copying omicverse/external/scdiffusion/classifier_sample.py -> build/lib/omicverse/external/scdiffusion 2026-04-05T04:04:06,395 copying omicverse/external/scdiffusion/cell_train.py -> build/lib/omicverse/external/scdiffusion 2026-04-05T04:04:06,398 creating build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,399 copying omicverse/external/umap_pytorch/__init__.py -> build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,402 copying omicverse/external/umap_pytorch/modules.py -> build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,404 copying omicverse/external/umap_pytorch/data.py -> build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,407 copying omicverse/external/umap_pytorch/main.py -> build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,410 copying omicverse/external/umap_pytorch/model.py -> build/lib/omicverse/external/umap_pytorch 2026-04-05T04:04:06,412 creating build/lib/omicverse/external/CAST 2026-04-05T04:04:06,414 copying omicverse/external/CAST/CAST_Projection.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,418 copying omicverse/external/CAST/__init__.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,420 copying omicverse/external/CAST/CAST_Mark.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,423 copying omicverse/external/CAST/visualize.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,425 copying omicverse/external/CAST/CAST_Stack.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,429 copying omicverse/external/CAST/main.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,432 copying omicverse/external/CAST/utils.py -> build/lib/omicverse/external/CAST 2026-04-05T04:04:06,435 creating build/lib/omicverse/external/VIA 2026-04-05T04:04:06,437 copying omicverse/external/VIA/utils_via.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,441 copying omicverse/external/VIA/__init__.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,443 copying omicverse/external/VIA/windmap.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,445 copying omicverse/external/VIA/datasets_via.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,448 copying omicverse/external/VIA/plotting_via_ov.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,456 copying omicverse/external/VIA/plotting_via.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,464 copying omicverse/external/VIA/core.py -> build/lib/omicverse/external/VIA 2026-04-05T04:04:06,474 creating build/lib/omicverse/external/topact 2026-04-05T04:04:06,476 copying omicverse/external/topact/countdata.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,478 copying omicverse/external/topact/__init__.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,481 copying omicverse/external/topact/classifier.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,484 copying omicverse/external/topact/spatial.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,488 copying omicverse/external/topact/constantlookuplist.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,490 copying omicverse/external/topact/filtering.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,493 copying omicverse/external/topact/densetools.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,495 copying omicverse/external/topact/sparsetools.py -> build/lib/omicverse/external/topact 2026-04-05T04:04:06,497 creating build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,499 copying omicverse/external/gtfparse/__init__.py -> build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,501 copying omicverse/external/gtfparse/create_missing_features.py -> build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,503 copying omicverse/external/gtfparse/parsing_error.py -> build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,505 copying omicverse/external/gtfparse/attribute_parsing.py -> build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,508 copying omicverse/external/gtfparse/read_gtf.py -> build/lib/omicverse/external/gtfparse 2026-04-05T04:04:06,511 creating build/lib/omicverse/external/PROST 2026-04-05T04:04:06,512 copying omicverse/external/PROST/__init__.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,514 copying omicverse/external/PROST/calculate_PI.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,517 copying omicverse/external/PROST/plot.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,520 copying omicverse/external/PROST/PROST.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,523 copying omicverse/external/PROST/model.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,525 copying omicverse/external/PROST/layers.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,529 copying omicverse/external/PROST/utils.py -> build/lib/omicverse/external/PROST 2026-04-05T04:04:06,533 creating build/lib/omicverse/external/bin2cell 2026-04-05T04:04:06,534 copying omicverse/external/bin2cell/__init__.py -> build/lib/omicverse/external/bin2cell 2026-04-05T04:04:06,536 copying omicverse/external/bin2cell/bin2cell.py -> build/lib/omicverse/external/bin2cell 2026-04-05T04:04:06,543 creating build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,544 copying omicverse/external/forcedirect2/forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,547 copying omicverse/external/forcedirect2/__init__.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,550 copying omicverse/external/forcedirect2/setup.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,552 copying omicverse/external/forcedirect2/fa2util.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,554 copying omicverse/external/forcedirect2/t_forceatlas2.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,556 copying omicverse/external/forcedirect2/compile.py -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:06,559 creating build/lib/omicverse/external/spaceflow 2026-04-05T04:04:06,561 copying omicverse/external/spaceflow/_util.py -> build/lib/omicverse/external/spaceflow 2026-04-05T04:04:06,563 copying omicverse/external/spaceflow/__init__.py -> build/lib/omicverse/external/spaceflow 2026-04-05T04:04:06,565 copying omicverse/external/spaceflow/_SpaceFlow.py -> build/lib/omicverse/external/spaceflow 2026-04-05T04:04:06,569 creating build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,570 copying omicverse/external/STAGATE_pyG/__init__.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,572 copying omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,575 copying omicverse/external/STAGATE_pyG/gat_conv.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,577 copying omicverse/external/STAGATE_pyG/STAGATE.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,579 copying omicverse/external/STAGATE_pyG/utils.py -> build/lib/omicverse/external/STAGATE_pyG 2026-04-05T04:04:06,582 creating build/lib/omicverse/external/mofapy2 2026-04-05T04:04:06,584 copying omicverse/external/mofapy2/__init__.py -> build/lib/omicverse/external/mofapy2 2026-04-05T04:04:06,586 copying omicverse/external/mofapy2/config.py -> build/lib/omicverse/external/mofapy2 2026-04-05T04:04:06,588 copying omicverse/external/mofapy2/version.py -> build/lib/omicverse/external/mofapy2 2026-04-05T04:04:06,590 creating build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,591 copying omicverse/external/GraphST/__init__.py -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,594 copying omicverse/external/GraphST/model.py -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,596 copying omicverse/external/GraphST/GraphST.py -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,599 copying omicverse/external/GraphST/preprocess.py -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,601 copying omicverse/external/GraphST/utils.py -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:06,604 creating build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,605 copying omicverse/external/SpatialDE/__init__.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,608 copying omicverse/external/SpatialDE/base.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,610 copying omicverse/external/SpatialDE/util.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,612 copying omicverse/external/SpatialDE/plot.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,615 copying omicverse/external/SpatialDE/anndata.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,617 copying omicverse/external/SpatialDE/aha.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,619 copying omicverse/external/SpatialDE/aeh.py -> build/lib/omicverse/external/SpatialDE 2026-04-05T04:04:06,622 creating build/lib/omicverse/external/scSLAT 2026-04-05T04:04:06,624 copying omicverse/external/scSLAT/__init__.py -> build/lib/omicverse/external/scSLAT 2026-04-05T04:04:06,626 copying omicverse/external/scSLAT/metrics.py -> build/lib/omicverse/external/scSLAT 2026-04-05T04:04:06,628 copying omicverse/external/scSLAT/utils.py -> build/lib/omicverse/external/scSLAT 2026-04-05T04:04:06,631 creating build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,633 copying omicverse/external/hotspot/none_model.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,635 copying omicverse/external/hotspot/plots.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,638 copying omicverse/external/hotspot/__init__.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,640 copying omicverse/external/hotspot/hotspot.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,643 copying omicverse/external/hotspot/modules.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,646 copying omicverse/external/hotspot/bernoulli_model.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,648 copying omicverse/external/hotspot/local_stats.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,651 copying omicverse/external/hotspot/knn.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,653 copying omicverse/external/hotspot/sim_data.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,655 copying omicverse/external/hotspot/local_stats_pairs.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,658 copying omicverse/external/hotspot/normal_model.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,660 copying omicverse/external/hotspot/danb_model.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,662 copying omicverse/external/hotspot/utils.py -> build/lib/omicverse/external/hotspot 2026-04-05T04:04:06,665 creating build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,667 copying omicverse/external/graphvelo/__init__.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,669 copying omicverse/external/graphvelo/mo.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,672 copying omicverse/external/graphvelo/metrics.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,675 copying omicverse/external/graphvelo/plot.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,679 copying omicverse/external/graphvelo/gam.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,682 copying omicverse/external/graphvelo/tangent_space.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,684 copying omicverse/external/graphvelo/graph_velocity.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,686 copying omicverse/external/graphvelo/kernel_density_smooth.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,689 copying omicverse/external/graphvelo/utils.py -> build/lib/omicverse/external/graphvelo 2026-04-05T04:04:06,693 creating build/lib/omicverse/external/cnmf 2026-04-05T04:04:06,694 copying omicverse/external/cnmf/cnmf.py -> build/lib/omicverse/external/cnmf 2026-04-05T04:04:06,699 copying omicverse/external/cnmf/preprocess.py -> build/lib/omicverse/external/cnmf 2026-04-05T04:04:06,703 creating build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,704 copying omicverse/external/STAligner/train_STAligner.py -> build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,707 copying omicverse/external/STAligner/gat_conv.py -> build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,710 copying omicverse/external/STAligner/mnn_utils.py -> build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,713 copying omicverse/external/STAligner/STALIGNER.py -> build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,715 copying omicverse/external/STAligner/ST_utils.py -> build/lib/omicverse/external/STAligner 2026-04-05T04:04:06,719 creating build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,720 copying omicverse/external/popv/algorithms/_harmony.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,722 copying omicverse/external/popv/algorithms/_celltypist.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,725 copying omicverse/external/popv/algorithms/__init__.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,727 copying omicverse/external/popv/algorithms/_svm.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,730 copying omicverse/external/popv/algorithms/_base_algorithm.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,732 copying omicverse/external/popv/algorithms/_rf.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,734 copying omicverse/external/popv/algorithms/_scanvi.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,737 copying omicverse/external/popv/algorithms/_scanorama.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,740 copying omicverse/external/popv/algorithms/_onclass.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,742 copying omicverse/external/popv/algorithms/_xgboost.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,745 copying omicverse/external/popv/algorithms/_bbknn.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,748 copying omicverse/external/popv/algorithms/_scvi.py -> build/lib/omicverse/external/popv/algorithms 2026-04-05T04:04:06,751 creating build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,752 copying omicverse/external/popv/hub/_model.py -> build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,755 copying omicverse/external/popv/hub/__init__.py -> build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,757 copying omicverse/external/popv/hub/_get_metrics.py -> build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,759 copying omicverse/external/popv/hub/_metadata.py -> build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,762 copying omicverse/external/popv/hub/_template.py -> build/lib/omicverse/external/popv/hub 2026-04-05T04:04:06,764 creating build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,765 copying omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,768 copying omicverse/external/bulk2single/OmicsTweezer/model.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,770 copying omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,772 copying omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,775 copying omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/lib/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:06,778 creating build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,779 copying omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,782 copying omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,785 copying omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,787 copying omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,790 copying omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,792 copying omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,795 copying omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,798 copying omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,801 copying omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,805 copying omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:06,810 creating build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,811 copying omicverse/external/bulk2single/pybayesprism/compare.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,814 copying omicverse/external/bulk2single/pybayesprism/optim.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,817 copying omicverse/external/bulk2single/pybayesprism/run.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,819 copying omicverse/external/bulk2single/pybayesprism/__init__.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,821 copying omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,824 copying omicverse/external/bulk2single/pybayesprism/main.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,826 copying omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,829 copying omicverse/external/bulk2single/pybayesprism/references.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,831 copying omicverse/external/bulk2single/pybayesprism/process_input.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,834 copying omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,836 copying omicverse/external/bulk2single/pybayesprism/extract.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,838 copying omicverse/external/bulk2single/pybayesprism/prism.py -> build/lib/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:06,842 creating build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,844 copying omicverse/external/latentvelo/tools/trad_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,846 copying omicverse/external/latentvelo/tools/__init__.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,848 copying omicverse/external/latentvelo/tools/batch_correction.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,851 copying omicverse/external/latentvelo/tools/check_velocity.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,853 copying omicverse/external/latentvelo/tools/cell_trajectories.py -> build/lib/omicverse/external/latentvelo/tools 2026-04-05T04:04:06,856 creating build/lib/omicverse/external/latentvelo/plotting 2026-04-05T04:04:06,857 copying omicverse/external/latentvelo/plotting/__init__.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-05T04:04:06,859 copying omicverse/external/latentvelo/plotting/metrics.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-05T04:04:06,862 copying omicverse/external/latentvelo/plotting/scatter_stream.py -> build/lib/omicverse/external/latentvelo/plotting 2026-04-05T04:04:06,865 creating build/lib/omicverse/external/latentvelo/evaluation 2026-04-05T04:04:06,867 copying omicverse/external/latentvelo/evaluation/__init__.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-05T04:04:06,869 copying omicverse/external/latentvelo/evaluation/metrics.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-05T04:04:06,872 copying omicverse/external/latentvelo/evaluation/run_metric.py -> build/lib/omicverse/external/latentvelo/evaluation 2026-04-05T04:04:06,875 creating build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,876 copying omicverse/external/latentvelo/models/annot_vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,880 copying omicverse/external/latentvelo/models/__init__.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,882 copying omicverse/external/latentvelo/models/modules.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,885 copying omicverse/external/latentvelo/models/atac_reg_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,888 copying omicverse/external/latentvelo/models/vae_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,891 copying omicverse/external/latentvelo/models/refine_model.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,896 copying omicverse/external/latentvelo/models/velocity_field.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,899 copying omicverse/external/latentvelo/models/gclayer.py -> build/lib/omicverse/external/latentvelo/models 2026-04-05T04:04:06,901 creating build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:06,903 copying omicverse/external/CEFCON/resources/__init__.py -> build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:06,906 creating build/lib/omicverse/external/scMulan/utils 2026-04-05T04:04:06,907 copying omicverse/external/scMulan/utils/hf_tokenizer.py -> build/lib/omicverse/external/scMulan/utils 2026-04-05T04:04:06,909 copying omicverse/external/scMulan/utils/utils.py -> build/lib/omicverse/external/scMulan/utils 2026-04-05T04:04:06,912 creating build/lib/omicverse/external/scMulan/model 2026-04-05T04:04:06,914 copying omicverse/external/scMulan/model/model_kvcache.py -> build/lib/omicverse/external/scMulan/model 2026-04-05T04:04:06,917 copying omicverse/external/scMulan/model/model.py -> build/lib/omicverse/external/scMulan/model 2026-04-05T04:04:06,920 creating build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:06,922 copying omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:06,925 creating build/lib/omicverse/external/STT/tl 2026-04-05T04:04:06,927 copying omicverse/external/STT/tl/__init__.py -> build/lib/omicverse/external/STT/tl 2026-04-05T04:04:06,929 copying omicverse/external/STT/tl/_construct_landscape.py -> build/lib/omicverse/external/STT/tl 2026-04-05T04:04:06,931 copying omicverse/external/STT/tl/_dynamical_analysis.py -> build/lib/omicverse/external/STT/tl 2026-04-05T04:04:06,934 copying omicverse/external/STT/tl/_pathway_analysis.py -> build/lib/omicverse/external/STT/tl 2026-04-05T04:04:06,937 creating build/lib/omicverse/external/STT/pl 2026-04-05T04:04:06,938 copying omicverse/external/STT/pl/__init__.py -> build/lib/omicverse/external/STT/pl 2026-04-05T04:04:06,940 copying omicverse/external/STT/pl/_networks.py -> build/lib/omicverse/external/STT/pl 2026-04-05T04:04:06,944 copying omicverse/external/STT/pl/_plot_tensor.py -> build/lib/omicverse/external/STT/pl 2026-04-05T04:04:06,947 copying omicverse/external/STT/pl/_plot_utils.py -> build/lib/omicverse/external/STT/pl 2026-04-05T04:04:06,950 creating build/lib/omicverse/external/single/arboreto 2026-04-05T04:04:06,952 copying omicverse/external/single/arboreto/__init__.py -> build/lib/omicverse/external/single/arboreto 2026-04-05T04:04:06,953 copying omicverse/external/single/arboreto/algo.py -> build/lib/omicverse/external/single/arboreto 2026-04-05T04:04:06,956 copying omicverse/external/single/arboreto/core.py -> build/lib/omicverse/external/single/arboreto 2026-04-05T04:04:06,960 copying omicverse/external/single/arboreto/utils.py -> build/lib/omicverse/external/single/arboreto 2026-04-05T04:04:06,963 creating build/lib/omicverse/external/spaco/external 2026-04-05T04:04:06,964 copying omicverse/external/spaco/external/__init__.py -> build/lib/omicverse/external/spaco/external 2026-04-05T04:04:06,966 copying omicverse/external/spaco/external/lack.py -> build/lib/omicverse/external/spaco/external 2026-04-05T04:04:06,969 creating build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,971 copying omicverse/external/commot/_optimal_transport/_usot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,973 copying omicverse/external/commot/_optimal_transport/__init__.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,975 copying omicverse/external/commot/_optimal_transport/_unot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,978 copying omicverse/external/commot/_optimal_transport/_cot.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,981 copying omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/lib/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:06,985 creating build/lib/omicverse/external/commot/tools 2026-04-05T04:04:06,986 copying omicverse/external/commot/tools/__init__.py -> build/lib/omicverse/external/commot/tools 2026-04-05T04:04:06,988 copying omicverse/external/commot/tools/_downstream_analysis.py -> build/lib/omicverse/external/commot/tools 2026-04-05T04:04:06,992 copying omicverse/external/commot/tools/_spatial_communication.py -> build/lib/omicverse/external/commot/tools 2026-04-05T04:04:06,997 creating build/lib/omicverse/external/commot/plotting 2026-04-05T04:04:06,999 copying omicverse/external/commot/plotting/__init__.py -> build/lib/omicverse/external/commot/plotting 2026-04-05T04:04:07,001 copying omicverse/external/commot/plotting/_streamtube.py -> build/lib/omicverse/external/commot/plotting 2026-04-05T04:04:07,004 copying omicverse/external/commot/plotting/_plotting.py -> build/lib/omicverse/external/commot/plotting 2026-04-05T04:04:07,008 creating build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,009 copying omicverse/external/commot/_utils/__init__.py -> build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,011 copying omicverse/external/commot/_utils/_binarization.py -> build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,013 copying omicverse/external/commot/_utils/_clustering.py -> build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,015 copying omicverse/external/commot/_utils/_similarity.py -> build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,018 copying omicverse/external/commot/_utils/_plotting.py -> build/lib/omicverse/external/commot/_utils 2026-04-05T04:04:07,022 creating build/lib/omicverse/external/commot/preprocessing 2026-04-05T04:04:07,023 copying omicverse/external/commot/preprocessing/__init__.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-05T04:04:07,025 copying omicverse/external/commot/preprocessing/_infer_spatial.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-05T04:04:07,028 copying omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/lib/omicverse/external/commot/preprocessing 2026-04-05T04:04:07,031 creating build/lib/omicverse/external/nocd/nn 2026-04-05T04:04:07,033 copying omicverse/external/nocd/nn/gcn.py -> build/lib/omicverse/external/nocd/nn 2026-04-05T04:04:07,035 copying omicverse/external/nocd/nn/imrpoved_gcn.py -> build/lib/omicverse/external/nocd/nn 2026-04-05T04:04:07,037 copying omicverse/external/nocd/nn/__init__.py -> build/lib/omicverse/external/nocd/nn 2026-04-05T04:04:07,039 copying omicverse/external/nocd/nn/decoder.py -> build/lib/omicverse/external/nocd/nn 2026-04-05T04:04:07,042 creating build/lib/omicverse/external/nocd/metrics 2026-04-05T04:04:07,043 copying omicverse/external/nocd/metrics/unsupervised.py -> build/lib/omicverse/external/nocd/metrics 2026-04-05T04:04:07,046 copying omicverse/external/nocd/metrics/__init__.py -> build/lib/omicverse/external/nocd/metrics 2026-04-05T04:04:07,048 copying omicverse/external/nocd/metrics/supervised.py -> build/lib/omicverse/external/nocd/metrics 2026-04-05T04:04:07,051 creating build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,052 copying omicverse/external/datacollect/collectors/pdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,055 copying omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,058 copying omicverse/external/datacollect/collectors/opentargets_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,061 copying omicverse/external/datacollect/collectors/__init__.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,063 copying omicverse/external/datacollect/collectors/base.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,065 copying omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,069 copying omicverse/external/datacollect/collectors/ensembl_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,071 copying omicverse/external/datacollect/collectors/ucsc_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,074 copying omicverse/external/datacollect/collectors/gnomad_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,077 copying omicverse/external/datacollect/collectors/blast_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,080 copying omicverse/external/datacollect/collectors/reactome_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,082 copying omicverse/external/datacollect/collectors/clinvar_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,085 copying omicverse/external/datacollect/collectors/geo_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,088 copying omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,090 copying omicverse/external/datacollect/collectors/uniprot_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,093 copying omicverse/external/datacollect/collectors/kegg_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,095 copying omicverse/external/datacollect/collectors/pride_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,098 copying omicverse/external/datacollect/collectors/alphafold_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,101 copying omicverse/external/datacollect/collectors/string_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,103 copying omicverse/external/datacollect/collectors/interpro_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,106 copying omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,109 copying omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/lib/omicverse/external/datacollect/collectors 2026-04-05T04:04:07,112 creating build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,113 copying omicverse/external/datacollect/utils/transformers.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,116 copying omicverse/external/datacollect/utils/__init__.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,118 copying omicverse/external/datacollect/utils/database.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,120 copying omicverse/external/datacollect/utils/validation.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,122 copying omicverse/external/datacollect/utils/logging.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,125 copying omicverse/external/datacollect/utils/omicverse_adapters.py -> build/lib/omicverse/external/datacollect/utils 2026-04-05T04:04:07,128 creating build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,130 copying omicverse/external/datacollect/api/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,132 copying omicverse/external/datacollect/api/cbioportal.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,135 copying omicverse/external/datacollect/api/remap.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,138 copying omicverse/external/datacollect/api/uniprot.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,140 copying omicverse/external/datacollect/api/mpd.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,142 copying omicverse/external/datacollect/api/__init__.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,144 copying omicverse/external/datacollect/api/alphafold.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,147 copying omicverse/external/datacollect/api/regulomedb.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,149 copying omicverse/external/datacollect/api/base.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,152 copying omicverse/external/datacollect/api/ucsc.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,154 copying omicverse/external/datacollect/api/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,157 copying omicverse/external/datacollect/api/kegg.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,159 copying omicverse/external/datacollect/api/opentargets.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,162 copying omicverse/external/datacollect/api/worms.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,165 copying omicverse/external/datacollect/api/geo_fixes.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,168 copying omicverse/external/datacollect/api/paleobiology.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,170 copying omicverse/external/datacollect/api/gnomad.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,173 copying omicverse/external/datacollect/api/reactome.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,176 copying omicverse/external/datacollect/api/pride.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,179 copying omicverse/external/datacollect/api/string.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,181 copying omicverse/external/datacollect/api/geo_backup.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,184 copying omicverse/external/datacollect/api/gtopdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,186 copying omicverse/external/datacollect/api/pdb_simple.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,189 copying omicverse/external/datacollect/api/pdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,191 copying omicverse/external/datacollect/api/clinvar.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,193 copying omicverse/external/datacollect/api/blast.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,196 copying omicverse/external/datacollect/api/interpro.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,198 copying omicverse/external/datacollect/api/iucn.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,201 copying omicverse/external/datacollect/api/geo.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,204 copying omicverse/external/datacollect/api/ccre.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,207 copying omicverse/external/datacollect/api/dbsnp.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,209 copying omicverse/external/datacollect/api/emdb.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,212 copying omicverse/external/datacollect/api/ensembl.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,215 copying omicverse/external/datacollect/api/jaspar.py -> build/lib/omicverse/external/datacollect/api 2026-04-05T04:04:07,218 creating build/lib/omicverse/external/datacollect/config 2026-04-05T04:04:07,219 copying omicverse/external/datacollect/config/__init__.py -> build/lib/omicverse/external/datacollect/config 2026-04-05T04:04:07,221 copying omicverse/external/datacollect/config/config.py -> build/lib/omicverse/external/datacollect/config 2026-04-05T04:04:07,224 creating build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,226 copying omicverse/external/datacollect/api/proteins/uniprot.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,228 copying omicverse/external/datacollect/api/proteins/__init__.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,230 copying omicverse/external/datacollect/api/proteins/alphafold.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,233 copying omicverse/external/datacollect/api/proteins/string.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,236 copying omicverse/external/datacollect/api/proteins/pdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,238 copying omicverse/external/datacollect/api/proteins/interpro.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,241 copying omicverse/external/datacollect/api/proteins/emdb.py -> build/lib/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:07,244 creating build/lib/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:07,245 copying omicverse/external/datacollect/api/pathways/__init__.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:07,247 copying omicverse/external/datacollect/api/pathways/kegg.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:07,250 copying omicverse/external/datacollect/api/pathways/reactome.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:07,252 copying omicverse/external/datacollect/api/pathways/gtopdb.py -> build/lib/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:07,255 creating build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,256 copying omicverse/external/datacollect/api/genomics/__init__.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,259 copying omicverse/external/datacollect/api/genomics/regulomedb.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,262 copying omicverse/external/datacollect/api/genomics/ucsc.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,264 copying omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,267 copying omicverse/external/datacollect/api/genomics/gnomad.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,270 copying omicverse/external/datacollect/api/genomics/clinvar.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,272 copying omicverse/external/datacollect/api/genomics/dbsnp.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,275 copying omicverse/external/datacollect/api/genomics/ensembl.py -> build/lib/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:07,278 creating build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,279 copying omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,282 copying omicverse/external/datacollect/api/expression/remap.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,284 copying omicverse/external/datacollect/api/expression/__init__.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,286 copying omicverse/external/datacollect/api/expression/opentargets.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,289 copying omicverse/external/datacollect/api/expression/geo.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,292 copying omicverse/external/datacollect/api/expression/ccre.py -> build/lib/omicverse/external/datacollect/api/expression 2026-04-05T04:04:07,295 creating build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,296 copying omicverse/external/datacollect/api/specialized/cbioportal.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,299 copying omicverse/external/datacollect/api/specialized/mpd.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,301 copying omicverse/external/datacollect/api/specialized/__init__.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,303 copying omicverse/external/datacollect/api/specialized/worms.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,306 copying omicverse/external/datacollect/api/specialized/paleobiology.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,309 copying omicverse/external/datacollect/api/specialized/pride.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,312 copying omicverse/external/datacollect/api/specialized/blast.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,314 copying omicverse/external/datacollect/api/specialized/iucn.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,317 copying omicverse/external/datacollect/api/specialized/jaspar.py -> build/lib/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:07,320 creating build/lib/omicverse/external/flowsig/utilities 2026-04-05T04:04:07,321 copying omicverse/external/flowsig/utilities/_utils.py -> build/lib/omicverse/external/flowsig/utilities 2026-04-05T04:04:07,324 copying omicverse/external/flowsig/utilities/__init__.py -> build/lib/omicverse/external/flowsig/utilities 2026-04-05T04:04:07,326 creating build/lib/omicverse/external/flowsig/tools 2026-04-05T04:04:07,327 copying omicverse/external/flowsig/tools/__init__.py -> build/lib/omicverse/external/flowsig/tools 2026-04-05T04:04:07,330 copying omicverse/external/flowsig/tools/_validate_network.py -> build/lib/omicverse/external/flowsig/tools 2026-04-05T04:04:07,332 copying omicverse/external/flowsig/tools/_network.py -> build/lib/omicverse/external/flowsig/tools 2026-04-05T04:04:07,335 copying omicverse/external/flowsig/tools/_spatial.py -> build/lib/omicverse/external/flowsig/tools 2026-04-05T04:04:07,337 creating build/lib/omicverse/external/flowsig/plotting 2026-04-05T04:04:07,339 copying omicverse/external/flowsig/plotting/__init__.py -> build/lib/omicverse/external/flowsig/plotting 2026-04-05T04:04:07,341 copying omicverse/external/flowsig/plotting/_plotting.py -> build/lib/omicverse/external/flowsig/plotting 2026-04-05T04:04:07,344 creating build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,345 copying omicverse/external/flowsig/preprocessing/__init__.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,348 copying omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,350 copying omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,353 copying omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,356 copying omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,359 copying omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/lib/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:07,362 creating build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,363 copying omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,366 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,369 copying omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,371 copying omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,374 copying omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,377 copying omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,380 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,382 copying omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,385 copying omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,387 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,389 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,391 copying omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,393 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,395 copying omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,397 copying omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,400 copying omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,402 copying omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,404 copying omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/lib/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:07,406 creating build/lib/omicverse/external/scdiffusion/VAE 2026-04-05T04:04:07,407 copying omicverse/external/scdiffusion/VAE/VAE_model.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-05T04:04:07,410 copying omicverse/external/scdiffusion/VAE/__init__.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-05T04:04:07,411 copying omicverse/external/scdiffusion/VAE/VAE_train.py -> build/lib/omicverse/external/scdiffusion/VAE 2026-04-05T04:04:07,414 creating build/lib/omicverse/external/CAST/model 2026-04-05T04:04:07,415 copying omicverse/external/CAST/model/__init__.py -> build/lib/omicverse/external/CAST/model 2026-04-05T04:04:07,417 copying omicverse/external/CAST/model/model_GCNII.py -> build/lib/omicverse/external/CAST/model 2026-04-05T04:04:07,419 copying omicverse/external/CAST/model/aug.py -> build/lib/omicverse/external/CAST/model 2026-04-05T04:04:07,422 creating build/lib/omicverse/external/space/cell2location 2026-04-05T04:04:07,423 copying omicverse/external/space/cell2location/run_colocation.py -> build/lib/omicverse/external/space/cell2location 2026-04-05T04:04:07,426 copying omicverse/external/space/cell2location/__init__.py -> build/lib/omicverse/external/space/cell2location 2026-04-05T04:04:07,428 creating build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:07,429 copying omicverse/external/space/cell2location/cell_comm/__init__.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:07,431 copying omicverse/external/space/cell2location/cell_comm/around_target.py -> build/lib/omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:07,433 creating build/lib/omicverse/external/space/cell2location/utils 2026-04-05T04:04:07,434 copying omicverse/external/space/cell2location/utils/__init__.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-05T04:04:07,437 copying omicverse/external/space/cell2location/utils/filtering.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-05T04:04:07,438 copying omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/lib/omicverse/external/space/cell2location/utils 2026-04-05T04:04:07,442 creating build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,443 copying omicverse/external/space/cell2location/plt/mapping_video.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,446 copying omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,448 copying omicverse/external/space/cell2location/plt/__init__.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,450 copying omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,452 copying omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,454 copying omicverse/external/space/cell2location/plt/RotateCrop.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,456 copying omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,458 copying omicverse/external/space/cell2location/plt/plot_spatial.py -> build/lib/omicverse/external/space/cell2location/plt 2026-04-05T04:04:07,460 creating build/lib/omicverse/external/space/cell2location/nn 2026-04-05T04:04:07,461 copying omicverse/external/space/cell2location/nn/__init__.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-05T04:04:07,463 copying omicverse/external/space/cell2location/nn/fclayers.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-05T04:04:07,465 copying omicverse/external/space/cell2location/nn/fclayers_context.py -> build/lib/omicverse/external/space/cell2location/nn 2026-04-05T04:04:07,468 creating build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,469 copying omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,472 copying omicverse/external/space/cell2location/distributions/transforms.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,474 copying omicverse/external/space/cell2location/distributions/__init__.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,475 copying omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,478 copying omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/lib/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:07,481 creating build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,482 copying omicverse/external/space/cell2location/models/__init__.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,484 copying omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,487 copying omicverse/external/space/cell2location/models/_cell2location_module.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,489 copying omicverse/external/space/cell2location/models/_cell2location_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,492 copying omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:07,495 creating build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:07,496 copying omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:07,499 copying omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:07,502 copying omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:07,503 copying omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/lib/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:07,506 creating build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,507 copying omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,510 copying omicverse/external/space/cell2location/models/base/__init__.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,511 copying omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,513 copying omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,515 copying omicverse/external/space/cell2location/models/base/base_model.py -> build/lib/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:07,519 creating build/lib/omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:07,520 copying omicverse/external/space/cell2location/models/reference/__init__.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:07,522 copying omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:07,525 copying omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/lib/omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:07,528 creating build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:07,529 copying omicverse/external/space/cell2location/models/simplified/__init__.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:07,531 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:07,533 copying omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/lib/omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:07,536 creating build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:07,537 copying omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:07,540 copying omicverse/external/space/cell2location/models/downstream/__init__.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:07,541 copying omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/lib/omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:07,545 creating build/lib/omicverse/external/mofapy2/simulate 2026-04-05T04:04:07,546 copying omicverse/external/mofapy2/simulate/__init__.py -> build/lib/omicverse/external/mofapy2/simulate 2026-04-05T04:04:07,547 copying omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/lib/omicverse/external/mofapy2/simulate 2026-04-05T04:04:07,550 creating build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,551 copying omicverse/external/mofapy2/build_model/train_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,553 copying omicverse/external/mofapy2/build_model/__init__.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,555 copying omicverse/external/mofapy2/build_model/save_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,557 copying omicverse/external/mofapy2/build_model/build_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,561 copying omicverse/external/mofapy2/build_model/init_model.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,563 copying omicverse/external/mofapy2/build_model/utils.py -> build/lib/omicverse/external/mofapy2/build_model 2026-04-05T04:04:07,566 creating build/lib/omicverse/external/mofapy2/run 2026-04-05T04:04:07,567 copying omicverse/external/mofapy2/run/__init__.py -> build/lib/omicverse/external/mofapy2/run 2026-04-05T04:04:07,568 copying omicverse/external/mofapy2/run/entry_point.py -> build/lib/omicverse/external/mofapy2/run 2026-04-05T04:04:07,572 creating build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,573 copying omicverse/external/mofapy2/core/gpu_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,575 copying omicverse/external/mofapy2/core/BayesNet.py -> build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,578 copying omicverse/external/mofapy2/core/__init__.py -> build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,579 copying omicverse/external/mofapy2/core/gp_utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,582 copying omicverse/external/mofapy2/core/utils.py -> build/lib/omicverse/external/mofapy2/core 2026-04-05T04:04:07,585 creating build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,586 copying omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,588 copying omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,590 copying omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,592 copying omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,595 copying omicverse/external/mofapy2/core/nodes/__init__.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,597 copying omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,599 copying omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,601 copying omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,604 copying omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,606 copying omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,609 copying omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,611 copying omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,614 copying omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,616 copying omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,618 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,620 copying omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,622 copying omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,625 copying omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/lib/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:07,628 creating build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,629 copying omicverse/external/mofapy2/core/distributions/__init__.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,631 copying omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,634 copying omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,636 copying omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,637 copying omicverse/external/mofapy2/core/distributions/poisson.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,639 copying omicverse/external/mofapy2/core/distributions/binomial.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,641 copying omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,643 copying omicverse/external/mofapy2/core/distributions/gamma.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,645 copying omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,647 copying omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,649 copying omicverse/external/mofapy2/core/distributions/beta.py -> build/lib/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:07,651 creating build/lib/omicverse/external/scSLAT/viz 2026-04-05T04:04:07,652 copying omicverse/external/scSLAT/viz/__init__.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-05T04:04:07,654 copying omicverse/external/scSLAT/viz/color.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-05T04:04:07,656 copying omicverse/external/scSLAT/viz/multi_dataset.py -> build/lib/omicverse/external/scSLAT/viz 2026-04-05T04:04:07,660 creating build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,661 copying omicverse/external/scSLAT/model/batch.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,663 copying omicverse/external/scSLAT/model/__init__.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,664 copying omicverse/external/scSLAT/model/graphmodel.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,666 copying omicverse/external/scSLAT/model/loaddata.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,669 copying omicverse/external/scSLAT/model/preprocess.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,671 copying omicverse/external/scSLAT/model/train.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,673 copying omicverse/external/scSLAT/model/loss.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,675 copying omicverse/external/scSLAT/model/utils.py -> build/lib/omicverse/external/scSLAT/model 2026-04-05T04:04:07,678 creating build/lib/omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:07,679 copying omicverse/external/scSLAT/model/prematch/__init__.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:07,681 copying omicverse/external/scSLAT/model/prematch/icp.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:07,683 copying omicverse/external/scSLAT/model/prematch/utils.py -> build/lib/omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:07,686 creating build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:07,687 copying omicverse/external/scSLAT/model/graphconv/__init__.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:07,689 copying omicverse/external/scSLAT/model/graphconv/combnet.py -> build/lib/omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:07,691 creating build/lib/omicverse/datasets/data_files 2026-04-05T04:04:07,692 copying omicverse/datasets/data_files/smoothDatakNN.py -> build/lib/omicverse/datasets/data_files 2026-04-05T04:04:07,695 creating build/lib/omicverse/utils/biocontext 2026-04-05T04:04:07,696 copying omicverse/utils/biocontext/__init__.py -> build/lib/omicverse/utils/biocontext 2026-04-05T04:04:07,698 copying omicverse/utils/biocontext/_client.py -> build/lib/omicverse/utils/biocontext 2026-04-05T04:04:07,700 copying omicverse/utils/biocontext/_tools.py -> build/lib/omicverse/utils/biocontext 2026-04-05T04:04:07,703 creating build/lib/omicverse/utils/harness 2026-04-05T04:04:07,704 copying omicverse/utils/harness/tool_catalog.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,707 copying omicverse/utils/harness/__init__.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,709 copying omicverse/utils/harness/contracts.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,711 copying omicverse/utils/harness/trace_store.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,713 copying omicverse/utils/harness/runtime_state.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,717 copying omicverse/utils/harness/cleanup.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,719 copying omicverse/utils/harness/server_cli.py -> build/lib/omicverse/utils/harness 2026-04-05T04:04:07,722 creating build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,723 copying omicverse/utils/inspector/production_api.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,726 copying omicverse/utils/inspector/inspector.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,729 copying omicverse/utils/inspector/__init__.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,731 copying omicverse/utils/inspector/suggestion_engine.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,733 copying omicverse/utils/inspector/agent_context_injector.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,736 copying omicverse/utils/inspector/data_state_validator.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,739 copying omicverse/utils/inspector/validators.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,741 copying omicverse/utils/inspector/workflow_escalator.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,745 copying omicverse/utils/inspector/examples.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,747 copying omicverse/utils/inspector/llm_formatter.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,750 copying omicverse/utils/inspector/prerequisite_checker.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,753 copying omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,756 copying omicverse/utils/inspector/data_structures.py -> build/lib/omicverse/utils/inspector 2026-04-05T04:04:07,759 creating build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,760 copying omicverse/utils/verifier/notebook_task_extractor.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,763 copying omicverse/utils/verifier/__init__.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,765 copying omicverse/utils/verifier/skill_description_quality.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,768 copying omicverse/utils/verifier/llm_skill_selector.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,770 copying omicverse/utils/verifier/skill_description_loader.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,772 copying omicverse/utils/verifier/end_to_end_verifier.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,775 copying omicverse/utils/verifier/__main__.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,777 copying omicverse/utils/verifier/cli.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,780 copying omicverse/utils/verifier/data_structures.py -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:07,783 creating build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,784 copying omicverse/utils/ovagent/runtime.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,786 copying omicverse/utils/ovagent/turn_controller.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,790 copying omicverse/utils/ovagent/run_store.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,792 copying omicverse/utils/ovagent/tool_scheduler.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,794 copying omicverse/utils/ovagent/__init__.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,796 copying omicverse/utils/ovagent/tool_runtime_web.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,798 copying omicverse/utils/ovagent/turn_artifacts.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,801 copying omicverse/utils/ovagent/bootstrap.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,803 copying omicverse/utils/ovagent/protocol.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,805 copying omicverse/utils/ovagent/workflow.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,807 copying omicverse/utils/ovagent/analysis_transformer.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,809 copying omicverse/utils/ovagent/codegen_tool_facade.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,811 copying omicverse/utils/ovagent/event_stream.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,814 copying omicverse/utils/ovagent/turn_followup.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,816 copying omicverse/utils/ovagent/subagent_controller.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,818 copying omicverse/utils/ovagent/codegen_pipeline.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,821 copying omicverse/utils/ovagent/analysis_executor.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,824 copying omicverse/utils/ovagent/tool_runtime.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,826 copying omicverse/utils/ovagent/prompt_builder.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,828 copying omicverse/utils/ovagent/registry_scanner.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,831 copying omicverse/utils/ovagent/context_budget.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,834 copying omicverse/utils/ovagent/session_facade.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,836 copying omicverse/utils/ovagent/tool_runtime_io.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,838 copying omicverse/utils/ovagent/analysis_diagnostics.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,840 copying omicverse/utils/ovagent/session_context.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,843 copying omicverse/utils/ovagent/auth.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,845 copying omicverse/utils/ovagent/tool_runtime_exec.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,848 copying omicverse/utils/ovagent/tool_runtime_workspace.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,851 copying omicverse/utils/ovagent/permission_policy.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,854 copying omicverse/utils/ovagent/analysis_sandbox.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,856 copying omicverse/utils/ovagent/repair_loop.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,859 copying omicverse/utils/ovagent/prompt_templates.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,861 copying omicverse/utils/ovagent/tool_registry.py -> build/lib/omicverse/utils/ovagent 2026-04-05T04:04:07,864 creating build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,865 copying omicverse/llm/UCE/__init__.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,867 copying omicverse/llm/UCE/eval_data.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,869 copying omicverse/llm/UCE/evaluate.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,871 copying omicverse/llm/UCE/model.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,873 copying omicverse/llm/UCE/eval_single_anndata.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,875 copying omicverse/llm/UCE/utils.py -> build/lib/omicverse/llm/UCE 2026-04-05T04:04:07,878 creating build/lib/omicverse/llm/utils 2026-04-05T04:04:07,879 copying omicverse/llm/utils/__init__.py -> build/lib/omicverse/llm/utils 2026-04-05T04:04:07,880 copying omicverse/llm/utils/output_utils.py -> build/lib/omicverse/llm/utils 2026-04-05T04:04:07,883 copying omicverse/llm/utils/message_standards.py -> build/lib/omicverse/llm/utils 2026-04-05T04:04:07,885 creating build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:07,886 copying omicverse/llm/scfoundation/__init__.py -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:07,888 copying omicverse/llm/scfoundation/load.py -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:07,890 copying omicverse/llm/scfoundation/get_embedding.py -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:07,892 copying omicverse/llm/scfoundation/finetune_model.py -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:07,894 creating build/lib/omicverse/llm/domain_research 2026-04-05T04:04:07,896 copying omicverse/llm/domain_research/__init__.py -> build/lib/omicverse/llm/domain_research 2026-04-05T04:04:07,898 creating build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,899 copying omicverse/llm/geneformer/evaluation_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,901 copying omicverse/llm/geneformer/__init__.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,903 copying omicverse/llm/geneformer/pretrainer.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,906 copying omicverse/llm/geneformer/classifier.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,909 copying omicverse/llm/geneformer/perturber_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,912 copying omicverse/llm/geneformer/tokenizer.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,914 copying omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,917 copying omicverse/llm/geneformer/emb_extractor.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,920 copying omicverse/llm/geneformer/mtl_classifier.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,922 copying omicverse/llm/geneformer/in_silico_perturber.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,926 copying omicverse/llm/geneformer/collator_for_classification.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,928 copying omicverse/llm/geneformer/classifier_utils.py -> build/lib/omicverse/llm/geneformer 2026-04-05T04:04:07,932 creating build/lib/omicverse/llm/dr 2026-04-05T04:04:07,932 copying omicverse/llm/dr/research_manager.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,935 copying omicverse/llm/dr/__init__.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,937 copying omicverse/llm/dr/cache.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,939 copying omicverse/llm/dr/vector_store.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,941 copying omicverse/llm/dr/prompts.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,942 copying omicverse/llm/dr/validation.py -> build/lib/omicverse/llm/dr 2026-04-05T04:04:07,945 creating build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,946 copying omicverse/llm/scgpt/__init__.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,948 copying omicverse/llm/scgpt/data_sampler.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,950 copying omicverse/llm/scgpt/data_collator.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,952 copying omicverse/llm/scgpt/trainer.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,954 copying omicverse/llm/scgpt/preprocess.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,957 copying omicverse/llm/scgpt/loss.py -> build/lib/omicverse/llm/scgpt 2026-04-05T04:04:07,959 creating build/lib/omicverse/llm/CellPLM 2026-04-05T04:04:07,960 copying omicverse/llm/CellPLM/__init__.py -> build/lib/omicverse/llm/CellPLM 2026-04-05T04:04:07,962 creating build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,963 copying omicverse/llm/UCE/data_proc/data_utils.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,965 copying omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,967 copying omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,969 copying omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,972 copying omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/lib/omicverse/llm/UCE/data_proc 2026-04-05T04:04:07,974 creating build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,975 copying omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,978 copying omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,980 copying omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,982 copying omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,984 copying omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,986 copying omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,988 copying omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/lib/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:07,990 creating build/lib/omicverse/llm/domain_research/write 2026-04-05T04:04:07,991 copying omicverse/llm/domain_research/write/synthesizer.py -> build/lib/omicverse/llm/domain_research/write 2026-04-05T04:04:07,993 creating build/lib/omicverse/llm/domain_research/retrievers 2026-04-05T04:04:07,994 copying omicverse/llm/domain_research/retrievers/__init__.py -> build/lib/omicverse/llm/domain_research/retrievers 2026-04-05T04:04:07,997 creating build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:07,998 copying omicverse/llm/geneformer/mtl/__init__.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:07,999 copying omicverse/llm/geneformer/mtl/collators.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,001 copying omicverse/llm/geneformer/mtl/data.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,004 copying omicverse/llm/geneformer/mtl/model.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,006 copying omicverse/llm/geneformer/mtl/eval_utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,008 copying omicverse/llm/geneformer/mtl/train.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,010 copying omicverse/llm/geneformer/mtl/utils.py -> build/lib/omicverse/llm/geneformer/mtl 2026-04-05T04:04:08,013 creating build/lib/omicverse/llm/dr/verify 2026-04-05T04:04:08,014 copying omicverse/llm/dr/verify/quality.py -> build/lib/omicverse/llm/dr/verify 2026-04-05T04:04:08,017 creating build/lib/omicverse/llm/dr/write 2026-04-05T04:04:08,018 copying omicverse/llm/dr/write/__init__.py -> build/lib/omicverse/llm/dr/write 2026-04-05T04:04:08,020 copying omicverse/llm/dr/write/synthesizer.py -> build/lib/omicverse/llm/dr/write 2026-04-05T04:04:08,022 copying omicverse/llm/dr/write/report.py -> build/lib/omicverse/llm/dr/write 2026-04-05T04:04:08,025 creating build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,026 copying omicverse/llm/dr/scope/__init__.py -> build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,028 copying omicverse/llm/dr/scope/brief.py -> build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,029 copying omicverse/llm/dr/scope/llm_scoper.py -> build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,031 copying omicverse/llm/dr/scope/manager.py -> build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,033 copying omicverse/llm/dr/scope/clarifier.py -> build/lib/omicverse/llm/dr/scope 2026-04-05T04:04:08,035 creating build/lib/omicverse/llm/dr/research 2026-04-05T04:04:08,036 copying omicverse/llm/dr/research/agent.py -> build/lib/omicverse/llm/dr/research 2026-04-05T04:04:08,038 copying omicverse/llm/dr/research/__init__.py -> build/lib/omicverse/llm/dr/research 2026-04-05T04:04:08,040 copying omicverse/llm/dr/research/supervisor.py -> build/lib/omicverse/llm/dr/research 2026-04-05T04:04:08,042 creating build/lib/omicverse/llm/dr/retrievers 2026-04-05T04:04:08,043 copying omicverse/llm/dr/retrievers/web_store.py -> build/lib/omicverse/llm/dr/retrievers 2026-04-05T04:04:08,045 copying omicverse/llm/dr/retrievers/embed_web.py -> build/lib/omicverse/llm/dr/retrievers 2026-04-05T04:04:08,048 creating build/lib/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:08,049 copying omicverse/llm/scgpt/tokenizer/__init__.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:08,051 copying omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:08,054 creating build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,054 copying omicverse/llm/scgpt/scbank/databank.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,057 copying omicverse/llm/scgpt/scbank/__init__.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,059 copying omicverse/llm/scgpt/scbank/data.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,061 copying omicverse/llm/scgpt/scbank/setting.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,062 copying omicverse/llm/scgpt/scbank/monitor.py -> build/lib/omicverse/llm/scgpt/scbank 2026-04-05T04:04:08,065 creating build/lib/omicverse/llm/scgpt/utils 2026-04-05T04:04:08,066 copying omicverse/llm/scgpt/utils/__init__.py -> build/lib/omicverse/llm/scgpt/utils 2026-04-05T04:04:08,067 copying omicverse/llm/scgpt/utils/util.py -> build/lib/omicverse/llm/scgpt/utils 2026-04-05T04:04:08,070 creating build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,071 copying omicverse/llm/scgpt/model/__init__.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,073 copying omicverse/llm/scgpt/model/grad_reverse.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,075 copying omicverse/llm/scgpt/model/multiomic_model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,078 copying omicverse/llm/scgpt/model/dsbn.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,080 copying omicverse/llm/scgpt/model/model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,082 copying omicverse/llm/scgpt/model/generation_model.py -> build/lib/omicverse/llm/scgpt/model 2026-04-05T04:04:08,085 creating build/lib/omicverse/llm/scgpt/tasks 2026-04-05T04:04:08,086 copying omicverse/llm/scgpt/tasks/__init__.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-05T04:04:08,088 copying omicverse/llm/scgpt/tasks/cell_emb.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-05T04:04:08,090 copying omicverse/llm/scgpt/tasks/grn.py -> build/lib/omicverse/llm/scgpt/tasks 2026-04-05T04:04:08,093 creating build/lib/omicverse/llm/CellPLM/decoder 2026-04-05T04:04:08,094 copying omicverse/llm/CellPLM/decoder/mlp.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-05T04:04:08,096 copying omicverse/llm/CellPLM/decoder/__init__.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-05T04:04:08,098 copying omicverse/llm/CellPLM/decoder/zinb.py -> build/lib/omicverse/llm/CellPLM/decoder 2026-04-05T04:04:08,101 creating build/lib/omicverse/llm/CellPLM/objective 2026-04-05T04:04:08,101 copying omicverse/llm/CellPLM/objective/__init__.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-05T04:04:08,103 copying omicverse/llm/CellPLM/objective/autoencoder.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-05T04:04:08,106 copying omicverse/llm/CellPLM/objective/zinb.py -> build/lib/omicverse/llm/CellPLM/objective 2026-04-05T04:04:08,108 creating build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,109 copying omicverse/llm/CellPLM/utils/eval.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,111 copying omicverse/llm/CellPLM/utils/__init__.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,113 copying omicverse/llm/CellPLM/utils/sparse.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,115 copying omicverse/llm/CellPLM/utils/data.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,117 copying omicverse/llm/CellPLM/utils/mask.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,120 copying omicverse/llm/CellPLM/utils/pe.py -> build/lib/omicverse/llm/CellPLM/utils 2026-04-05T04:04:08,122 creating build/lib/omicverse/llm/CellPLM/encoder 2026-04-05T04:04:08,123 copying omicverse/llm/CellPLM/encoder/mlp.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-05T04:04:08,125 copying omicverse/llm/CellPLM/encoder/__init__.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-05T04:04:08,127 copying omicverse/llm/CellPLM/encoder/transformer.py -> build/lib/omicverse/llm/CellPLM/encoder 2026-04-05T04:04:08,129 creating build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,130 copying omicverse/llm/CellPLM/layer/performer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,132 copying omicverse/llm/CellPLM/layer/__init__.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,134 copying omicverse/llm/CellPLM/layer/cosformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,136 copying omicverse/llm/CellPLM/layer/transformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,139 copying omicverse/llm/CellPLM/layer/flowformer.py -> build/lib/omicverse/llm/CellPLM/layer 2026-04-05T04:04:08,141 creating build/lib/omicverse/llm/CellPLM/head 2026-04-05T04:04:08,142 copying omicverse/llm/CellPLM/head/__init__.py -> build/lib/omicverse/llm/CellPLM/head 2026-04-05T04:04:08,144 copying omicverse/llm/CellPLM/head/downstream.py -> build/lib/omicverse/llm/CellPLM/head 2026-04-05T04:04:08,147 creating build/lib/omicverse/llm/CellPLM/latent 2026-04-05T04:04:08,148 copying omicverse/llm/CellPLM/latent/contrastive.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-05T04:04:08,150 copying omicverse/llm/CellPLM/latent/__init__.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-05T04:04:08,152 copying omicverse/llm/CellPLM/latent/adversarial.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-05T04:04:08,154 copying omicverse/llm/CellPLM/latent/autoencoders.py -> build/lib/omicverse/llm/CellPLM/latent 2026-04-05T04:04:08,156 creating build/lib/omicverse/llm/CellPLM/model 2026-04-05T04:04:08,157 copying omicverse/llm/CellPLM/model/__init__.py -> build/lib/omicverse/llm/CellPLM/model 2026-04-05T04:04:08,159 copying omicverse/llm/CellPLM/model/cellformer.py -> build/lib/omicverse/llm/CellPLM/model 2026-04-05T04:04:08,162 creating build/lib/omicverse/llm/CellPLM/embedder 2026-04-05T04:04:08,163 copying omicverse/llm/CellPLM/embedder/__init__.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-04-05T04:04:08,165 copying omicverse/llm/CellPLM/embedder/omics.py -> build/lib/omicverse/llm/CellPLM/embedder 2026-04-05T04:04:08,167 creating build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,168 copying omicverse/llm/CellPLM/pipeline/__init__.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,170 copying omicverse/llm/CellPLM/pipeline/experimental.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,172 copying omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,175 copying omicverse/llm/CellPLM/pipeline/imputation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,177 copying omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/lib/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:08,180 creating build/lib/omicverse/single/templates 2026-04-05T04:04:08,181 copying omicverse/single/templates/analytics_example.py -> build/lib/omicverse/single/templates 2026-04-05T04:04:08,182 copying omicverse/single/templates/analytics_config.py -> build/lib/omicverse/single/templates 2026-04-05T04:04:08,185 creating build/lib/omicverse/io/single 2026-04-05T04:04:08,186 copying omicverse/io/single/__init__.py -> build/lib/omicverse/io/single 2026-04-05T04:04:08,188 copying omicverse/io/single/_rust.py -> build/lib/omicverse/io/single 2026-04-05T04:04:08,190 copying omicverse/io/single/_read.py -> build/lib/omicverse/io/single 2026-04-05T04:04:08,192 copying omicverse/io/single/_formats.py -> build/lib/omicverse/io/single 2026-04-05T04:04:08,195 creating build/lib/omicverse/io/general 2026-04-05T04:04:08,195 copying omicverse/io/general/__init__.py -> build/lib/omicverse/io/general 2026-04-05T04:04:08,197 copying omicverse/io/general/_serialization.py -> build/lib/omicverse/io/general 2026-04-05T04:04:08,199 copying omicverse/io/general/_tabular.py -> build/lib/omicverse/io/general 2026-04-05T04:04:08,201 creating build/lib/omicverse/io/spatial 2026-04-05T04:04:08,202 copying omicverse/io/spatial/_nanostring.py -> build/lib/omicverse/io/spatial 2026-04-05T04:04:08,205 copying omicverse/io/spatial/__init__.py -> build/lib/omicverse/io/spatial 2026-04-05T04:04:08,207 copying omicverse/io/spatial/_visium_hd.py -> build/lib/omicverse/io/spatial 2026-04-05T04:04:08,209 copying omicverse/io/spatial/_visium.py -> build/lib/omicverse/io/spatial 2026-04-05T04:04:08,212 creating build/lib/omicverse/io/bulk 2026-04-05T04:04:08,213 copying omicverse/io/bulk/__init__.py -> build/lib/omicverse/io/bulk 2026-04-05T04:04:08,215 creating build/lib/omicverse/pp/experimental 2026-04-05T04:04:08,216 copying omicverse/pp/experimental/__init__.py -> build/lib/omicverse/pp/experimental 2026-04-05T04:04:08,218 copying omicverse/pp/experimental/_highly_variable_genes.py -> build/lib/omicverse/pp/experimental 2026-04-05T04:04:08,220 copying omicverse/pp/experimental/_normalization.py -> build/lib/omicverse/pp/experimental 2026-04-05T04:04:08,223 creating build/lib/omicverse/pp/_scrublet_backend 2026-04-05T04:04:08,224 copying omicverse/pp/_scrublet_backend/__init__.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-05T04:04:08,226 copying omicverse/pp/_scrublet_backend/scrublet.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-05T04:04:08,228 copying omicverse/pp/_scrublet_backend/helper_functions.py -> build/lib/omicverse/pp/_scrublet_backend 2026-04-05T04:04:08,231 creating build/lib/omicverse/bulk/_alignment 2026-04-05T04:04:08,232 copying omicverse/bulk/_alignment/__init__.py -> build/lib/omicverse/bulk/_alignment 2026-04-05T04:04:08,235 creating build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,236 copying omicverse/fm/adapters/__init__.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,238 copying omicverse/fm/adapters/base.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,241 copying omicverse/fm/adapters/_experimental.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,244 copying omicverse/fm/adapters/_scgpt.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,246 copying omicverse/fm/adapters/_cellplm.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,248 copying omicverse/fm/adapters/_uce.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,251 copying omicverse/fm/adapters/_scfoundation.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,254 copying omicverse/fm/adapters/_geneformer.py -> build/lib/omicverse/fm/adapters 2026-04-05T04:04:08,257 creating build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,258 copying omicverse/jarvis/runtime/runtime.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,261 copying omicverse/jarvis/runtime/policy.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,264 copying omicverse/jarvis/runtime/__init__.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,266 copying omicverse/jarvis/runtime/execution_adapter.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,268 copying omicverse/jarvis/runtime/models.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,270 copying omicverse/jarvis/runtime/task_registry.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,272 copying omicverse/jarvis/runtime/router.py -> build/lib/omicverse/jarvis/runtime 2026-04-05T04:04:08,275 creating build/lib/omicverse/jarvis/memory 2026-04-05T04:04:08,276 copying omicverse/jarvis/memory/store.py -> build/lib/omicverse/jarvis/memory 2026-04-05T04:04:08,279 copying omicverse/jarvis/memory/__init__.py -> build/lib/omicverse/jarvis/memory 2026-04-05T04:04:08,282 creating build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,283 copying omicverse/jarvis/channels/channel_core.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,286 copying omicverse/jarvis/channels/__init__.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,288 copying omicverse/jarvis/channels/telegram.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,292 copying omicverse/jarvis/channels/wechat.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,296 copying omicverse/jarvis/channels/qq.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,300 copying omicverse/jarvis/channels/imessage.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,303 copying omicverse/jarvis/channels/discord.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,307 copying omicverse/jarvis/channels/feishu.py -> build/lib/omicverse/jarvis/channels 2026-04-05T04:04:08,311 creating build/lib/omicverse/jarvis/gateway 2026-04-05T04:04:08,312 copying omicverse/jarvis/gateway/__init__.py -> build/lib/omicverse/jarvis/gateway 2026-04-05T04:04:08,315 copying omicverse/jarvis/gateway/web_bridge.py -> build/lib/omicverse/jarvis/gateway 2026-04-05T04:04:08,317 copying omicverse/jarvis/gateway/routing.py -> build/lib/omicverse/jarvis/gateway 2026-04-05T04:04:08,322 running egg_info 2026-04-05T04:04:08,338 writing omicverse.egg-info/PKG-INFO 2026-04-05T04:04:08,358 writing dependency_links to omicverse.egg-info/dependency_links.txt 2026-04-05T04:04:08,359 writing entry points to omicverse.egg-info/entry_points.txt 2026-04-05T04:04:08,370 writing requirements to omicverse.egg-info/requires.txt 2026-04-05T04:04:08,371 writing top-level names to omicverse.egg-info/top_level.txt 2026-04-05T04:04:08,558 reading manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-05T04:04:08,622 reading manifest template 'MANIFEST.in' 2026-04-05T04:04:09,801 warning: no files found matching '*.pyi' under directory 'omicverse' 2026-04-05T04:04:11,447 warning: no files found matching '*.yaml' under directory 'omicverse' 2026-04-05T04:04:11,899 warning: no files found matching '*.yml' under directory 'omicverse' 2026-04-05T04:04:16,064 warning: no files found matching '*.jpg' under directory 'omicverse' 2026-04-05T04:04:16,542 warning: no files found matching '*.jpeg' under directory 'omicverse' 2026-04-05T04:04:17,225 warning: no files found matching '*.svg' under directory 'omicverse' 2026-04-05T04:04:17,734 warning: no files found matching '*.ico' under directory 'omicverse' 2026-04-05T04:04:18,235 warning: no files found matching '*.db' under directory 'omicverse' 2026-04-05T04:04:18,931 warning: no files found matching '*.npz' under directory 'omicverse' 2026-04-05T04:04:19,462 warning: no files found matching '*.gz' under directory 'omicverse' 2026-04-05T04:04:19,465 no previously-included directories found matching '.git' 2026-04-05T04:04:19,469 no previously-included directories found matching '.github' 2026-04-05T04:04:19,472 no previously-included directories found matching '.claude' 2026-04-05T04:04:19,475 no previously-included directories found matching '.pytest_cache' 2026-04-05T04:04:19,478 no previously-included directories found matching '.ruff_cache' 2026-04-05T04:04:19,482 no previously-included directories found matching '.vscode' 2026-04-05T04:04:19,485 no previously-included directories found matching 'docs' 2026-04-05T04:04:19,488 no previously-included directories found matching 'tests' 2026-04-05T04:04:19,492 no previously-included directories found matching 'OvIntelligence' 2026-04-05T04:04:19,495 no previously-included directories found matching 'READMEM' 2026-04-05T04:04:19,499 no previously-included directories found matching 'omicverse_guide' 2026-04-05T04:04:19,502 no previously-included directories found matching 'omicverse_web' 2026-04-05T04:04:19,505 no previously-included directories found matching 'tmp' 2026-04-05T04:04:19,508 no previously-included directories found matching 'tmp_omicverse' 2026-04-05T04:04:19,511 no previously-included directories found matching 'Skill_Seekers' 2026-04-05T04:04:19,518 warning: no previously-included files matching '.DS_Store' found anywhere in distribution 2026-04-05T04:04:19,526 warning: no previously-included files matching '*.py[cod]' found anywhere in distribution 2026-04-05T04:04:19,532 warning: no previously-included files matching '__pycache__' found anywhere in distribution 2026-04-05T04:04:19,533 adding license file 'LICENSE' 2026-04-05T04:04:19,605 writing manifest file 'omicverse.egg-info/SOURCES.txt' 2026-04-05T04:04:19,705 copying omicverse/ov_skill_seeker/README.md -> build/lib/omicverse/ov_skill_seeker 2026-04-05T04:04:19,707 copying omicverse/single/README.md -> build/lib/omicverse/single 2026-04-05T04:04:19,710 copying omicverse/jarvis/USAGE.en.md -> build/lib/omicverse/jarvis 2026-04-05T04:04:19,713 copying omicverse/jarvis/USAGE.md -> build/lib/omicverse/jarvis 2026-04-05T04:04:19,715 copying omicverse/jarvis/USAGE.zh.md -> build/lib/omicverse/jarvis 2026-04-05T04:04:19,717 copying omicverse/jarvis/agent_bridge_readme.md -> build/lib/omicverse/jarvis 2026-04-05T04:04:19,720 copying omicverse/external/datacollect/README.md -> build/lib/omicverse/external/datacollect 2026-04-05T04:04:19,722 copying omicverse/external/datacollect/TEST_SUITE_README.md -> build/lib/omicverse/external/datacollect 2026-04-05T04:04:19,725 copying omicverse/external/forcedirect2/README.md -> build/lib/omicverse/external/forcedirect2 2026-04-05T04:04:19,727 copying omicverse/external/GraphST/readme.txt -> build/lib/omicverse/external/GraphST 2026-04-05T04:04:19,729 copying omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/lib/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:19,735 creating build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:19,736 copying omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:19,847 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:19,851 copying omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/lib/omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:19,858 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:19,860 copying omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:19,863 copying omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:19,866 copying omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/lib/omicverse/external/CEFCON/resources 2026-04-05T04:04:19,868 copying omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:20,370 copying omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:20,395 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:20,397 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:20,401 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:20,405 creating build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:20,406 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:20,410 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:20,414 copying omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:20,420 creating build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,421 copying omicverse/external/datacollect/docs/API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,424 copying omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,427 copying omicverse/external/datacollect/docs/CONFIGURATION.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,430 copying omicverse/external/datacollect/docs/DATABASE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,433 copying omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,437 copying omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,440 copying omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,443 copying omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,446 copying omicverse/external/datacollect/docs/QUICK_START.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,449 copying omicverse/external/datacollect/docs/README.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,452 copying omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,455 copying omicverse/external/datacollect/docs/WORKFLOWS.md -> build/lib/omicverse/external/datacollect/docs 2026-04-05T04:04:20,458 copying omicverse/external/space/cell2location/models/README.md -> build/lib/omicverse/external/space/cell2location/models 2026-04-05T04:04:20,461 creating build/lib/omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:20,462 copying omicverse/external/mofapy2/run/test_data/view_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:20,472 copying omicverse/external/mofapy2/run/test_data/view_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:20,482 copying omicverse/external/mofapy2/run/test_data/view_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:20,492 creating build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:20,494 copying omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:20,517 copying omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:20,534 copying omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/lib/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:20,551 copying omicverse/datasets/data_files/README.md -> build/lib/omicverse/datasets/data_files 2026-04-05T04:04:20,553 copying omicverse/datasets/data_files/features_model_training_17.csv -> build/lib/omicverse/datasets/data_files 2026-04-05T04:04:20,558 copying omicverse/datasets/data_files/human_alias_list.txt -> build/lib/omicverse/datasets/data_files 2026-04-05T04:04:20,561 copying omicverse/datasets/data_files/mart_export.txt -> build/lib/omicverse/datasets/data_files 2026-04-05T04:04:20,666 creating build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,667 copying omicverse/datasets/data_files/TF/allTFs_human.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,670 copying omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,674 copying omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,686 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,708 copying omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/lib/omicverse/datasets/data_files/TF 2026-04-05T04:04:20,726 copying omicverse/utils/verifier/README.md -> build/lib/omicverse/utils/verifier 2026-04-05T04:04:20,730 copying omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:20,739 copying omicverse/llm/scfoundation/README.md -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:20,742 copying omicverse/llm/scfoundation/check_consistency.ipynb -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:20,746 copying omicverse/llm/scfoundation/training_hyperparameter.txt -> build/lib/omicverse/llm/scfoundation 2026-04-05T04:04:20,748 creating build/lib/omicverse/llm/scfoundation/models 2026-04-05T04:04:20,749 copying omicverse/llm/scfoundation/models/download.txt -> build/lib/omicverse/llm/scfoundation/models 2026-04-05T04:04:20,751 copying omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:20,773 copying omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/lib/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:20,788 copying omicverse/single/templates/report_template.html -> build/lib/omicverse/single/templates 2026-04-05T04:04:20,791 copying omicverse/single/templates/script.js -> build/lib/omicverse/single/templates 2026-04-05T04:04:20,793 copying omicverse/single/templates/sections.html -> build/lib/omicverse/single/templates 2026-04-05T04:04:20,796 copying omicverse/single/templates/styles.css -> build/lib/omicverse/single/templates 2026-04-05T04:04:20,798 creating build/lib/omicverse/single/templates/img 2026-04-05T04:04:20,799 copying omicverse/single/templates/img/placeholder_logo.md -> build/lib/omicverse/single/templates/img 2026-04-05T04:04:20,801 copying omicverse/single/templates/img/stanford-logo.png -> build/lib/omicverse/single/templates/img 2026-04-05T04:04:20,804 copying omicverse/single/templates/img/sun-yet-logo.png -> build/lib/omicverse/single/templates/img 2026-04-05T04:04:20,808 copying omicverse/single/templates/img/ustb-logo.png -> build/lib/omicverse/single/templates/img 2026-04-05T04:04:20,916 installing to build/bdist.linux-armv7l/wheel 2026-04-05T04:04:20,917 running install 2026-04-05T04:04:20,940 running install_lib 2026-04-05T04:04:20,946 creating build/bdist.linux-armv7l/wheel 2026-04-05T04:04:20,948 creating build/bdist.linux-armv7l/wheel/omicverse 2026-04-05T04:04:20,950 creating build/bdist.linux-armv7l/wheel/omicverse/mcp 2026-04-05T04:04:20,951 copying build/lib/omicverse/mcp/session_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,955 copying build/lib/omicverse/mcp/overrides.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,957 copying build/lib/omicverse/mcp/class_specs.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,959 copying build/lib/omicverse/mcp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,961 copying build/lib/omicverse/mcp/manifest.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,964 copying build/lib/omicverse/mcp/schema.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,966 copying build/lib/omicverse/mcp/executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,968 copying build/lib/omicverse/mcp/naming.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,970 copying build/lib/omicverse/mcp/server.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,974 creating build/bdist.linux-armv7l/wheel/omicverse/mcp/adapters 2026-04-05T04:04:20,975 copying build/lib/omicverse/mcp/adapters/function_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-05T04:04:20,977 copying build/lib/omicverse/mcp/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-05T04:04:20,979 copying build/lib/omicverse/mcp/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-05T04:04:20,980 copying build/lib/omicverse/mcp/adapters/class_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-05T04:04:20,983 copying build/lib/omicverse/mcp/adapters/adata_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp/adapters 2026-04-05T04:04:20,985 copying build/lib/omicverse/mcp/adata_kernel_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,988 copying build/lib/omicverse/mcp/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,989 copying build/lib/omicverse/mcp/local_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,992 copying build/lib/omicverse/mcp/availability.py -> build/bdist.linux-armv7l/wheel/./omicverse/mcp 2026-04-05T04:04:20,994 creating build/bdist.linux-armv7l/wheel/omicverse/ov_skill_seeker 2026-04-05T04:04:20,995 copying build/lib/omicverse/ov_skill_seeker/pdf_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:20,997 copying build/lib/omicverse/ov_skill_seeker/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:20,999 copying build/lib/omicverse/ov_skill_seeker/docs_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,001 copying build/lib/omicverse/ov_skill_seeker/security.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,003 copying build/lib/omicverse/ov_skill_seeker/config_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,005 copying build/lib/omicverse/ov_skill_seeker/link_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,007 copying build/lib/omicverse/ov_skill_seeker/unified_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,009 copying build/lib/omicverse/ov_skill_seeker/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,011 copying build/lib/omicverse/ov_skill_seeker/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,014 copying build/lib/omicverse/ov_skill_seeker/github_scraper.py -> build/bdist.linux-armv7l/wheel/./omicverse/ov_skill_seeker 2026-04-05T04:04:21,017 creating build/bdist.linux-armv7l/wheel/omicverse/external 2026-04-05T04:04:21,018 creating build/bdist.linux-armv7l/wheel/omicverse/external/SEACells 2026-04-05T04:04:21,019 copying build/lib/omicverse/external/SEACells/genescores.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,022 copying build/lib/omicverse/external/SEACells/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,024 copying build/lib/omicverse/external/SEACells/tfactivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,026 copying build/lib/omicverse/external/SEACells/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,028 copying build/lib/omicverse/external/SEACells/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,030 copying build/lib/omicverse/external/SEACells/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,032 copying build/lib/omicverse/external/SEACells/cpu_dense.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,035 copying build/lib/omicverse/external/SEACells/cpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,037 copying build/lib/omicverse/external/SEACells/accessibility.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,039 copying build/lib/omicverse/external/SEACells/build_graph.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,041 copying build/lib/omicverse/external/SEACells/gpu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,044 copying build/lib/omicverse/external/SEACells/domainadapt.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,046 copying build/lib/omicverse/external/SEACells/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,048 copying build/lib/omicverse/external/SEACells/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,050 copying build/lib/omicverse/external/SEACells/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SEACells 2026-04-05T04:04:21,053 creating build/bdist.linux-armv7l/wheel/omicverse/external/cytotrace2 2026-04-05T04:04:21,054 copying build/lib/omicverse/external/cytotrace2/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-05T04:04:21,056 copying build/lib/omicverse/external/cytotrace2/gen_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-05T04:04:21,058 copying build/lib/omicverse/external/cytotrace2/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cytotrace2 2026-04-05T04:04:21,061 creating build/bdist.linux-armv7l/wheel/omicverse/external/scanorama 2026-04-05T04:04:21,061 copying build/lib/omicverse/external/scanorama/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-05T04:04:21,063 copying build/lib/omicverse/external/scanorama/scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-05T04:04:21,066 copying build/lib/omicverse/external/scanorama/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scanorama 2026-04-05T04:04:21,069 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyscenic 2026-04-05T04:04:21,070 copying build/lib/omicverse/external/pyscenic/plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,073 copying build/lib/omicverse/external/pyscenic/_version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,075 copying build/lib/omicverse/external/pyscenic/export.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,078 copying build/lib/omicverse/external/pyscenic/log.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,080 copying build/lib/omicverse/external/pyscenic/diptest.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,082 copying build/lib/omicverse/external/pyscenic/featureseq.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,084 copying build/lib/omicverse/external/pyscenic/rss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,086 copying build/lib/omicverse/external/pyscenic/prune.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,088 copying build/lib/omicverse/external/pyscenic/transform.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,091 copying build/lib/omicverse/external/pyscenic/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,093 copying build/lib/omicverse/external/pyscenic/math.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,094 copying build/lib/omicverse/external/pyscenic/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyscenic 2026-04-05T04:04:21,097 creating build/bdist.linux-armv7l/wheel/omicverse/external/somde 2026-04-05T04:04:21,098 copying build/lib/omicverse/external/somde/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-05T04:04:21,100 copying build/lib/omicverse/external/somde/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-05T04:04:21,103 copying build/lib/omicverse/external/somde/som.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/somde 2026-04-05T04:04:21,106 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv 2026-04-05T04:04:21,108 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/algorithms 2026-04-05T04:04:21,110 copying build/lib/omicverse/external/popv/algorithms/_harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,112 copying build/lib/omicverse/external/popv/algorithms/_celltypist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,115 copying build/lib/omicverse/external/popv/algorithms/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,117 copying build/lib/omicverse/external/popv/algorithms/_svm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,119 copying build/lib/omicverse/external/popv/algorithms/_base_algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,121 copying build/lib/omicverse/external/popv/algorithms/_rf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,124 copying build/lib/omicverse/external/popv/algorithms/_scanvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,127 copying build/lib/omicverse/external/popv/algorithms/_scanorama.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,129 copying build/lib/omicverse/external/popv/algorithms/_onclass.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,132 copying build/lib/omicverse/external/popv/algorithms/_xgboost.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,134 copying build/lib/omicverse/external/popv/algorithms/_bbknn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,137 copying build/lib/omicverse/external/popv/algorithms/_scvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/algorithms 2026-04-05T04:04:21,140 copying build/lib/omicverse/external/popv/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,143 copying build/lib/omicverse/external/popv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,146 creating build/bdist.linux-armv7l/wheel/omicverse/external/popv/hub 2026-04-05T04:04:21,147 copying build/lib/omicverse/external/popv/hub/_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-05T04:04:21,150 copying build/lib/omicverse/external/popv/hub/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-05T04:04:21,153 copying build/lib/omicverse/external/popv/hub/_get_metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-05T04:04:21,156 copying build/lib/omicverse/external/popv/hub/_metadata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-05T04:04:21,159 copying build/lib/omicverse/external/popv/hub/_template.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv/hub 2026-04-05T04:04:21,161 copying build/lib/omicverse/external/popv/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,164 copying build/lib/omicverse/external/popv/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,166 copying build/lib/omicverse/external/popv/annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,169 copying build/lib/omicverse/external/popv/preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/popv 2026-04-05T04:04:21,172 creating build/bdist.linux-armv7l/wheel/omicverse/external/cellanova 2026-04-05T04:04:21,173 copying build/lib/omicverse/external/cellanova/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-05T04:04:21,175 copying build/lib/omicverse/external/cellanova/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-05T04:04:21,177 copying build/lib/omicverse/external/cellanova/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cellanova 2026-04-05T04:04:21,179 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single 2026-04-05T04:04:21,180 copying build/lib/omicverse/external/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single 2026-04-05T04:04:21,182 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,183 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,186 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,188 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/train_predict.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,190 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,192 copying build/lib/omicverse/external/bulk2single/OmicsTweezer/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/OmicsTweezer 2026-04-05T04:04:21,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,196 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/representative_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,198 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/vaegan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,201 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/get_eg_representatives.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,203 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,205 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/initial_setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,207 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/singlecell_process.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,210 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/fast_generator.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,212 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/inference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,215 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/hamster_to_human_gene.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,220 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/oldinference.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,223 copying build/lib/omicverse/external/bulk2single/scSemiProfiler/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/scSemiProfiler 2026-04-05T04:04:21,226 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,227 copying build/lib/omicverse/external/bulk2single/pybayesprism/compare.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,230 copying build/lib/omicverse/external/bulk2single/pybayesprism/optim.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,232 copying build/lib/omicverse/external/bulk2single/pybayesprism/run.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,234 copying build/lib/omicverse/external/bulk2single/pybayesprism/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,235 copying build/lib/omicverse/external/bulk2single/pybayesprism/theta_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,237 copying build/lib/omicverse/external/bulk2single/pybayesprism/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,239 copying build/lib/omicverse/external/bulk2single/pybayesprism/gibbs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,242 creating build/bdist.linux-armv7l/wheel/omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:21,243 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.hs.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:21,247 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/gencode.v22.broad.category.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:21,341 copying build/lib/omicverse/external/bulk2single/pybayesprism/txt/genelist.mm.new.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism/txt 2026-04-05T04:04:21,348 copying build/lib/omicverse/external/bulk2single/pybayesprism/references.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,350 copying build/lib/omicverse/external/bulk2single/pybayesprism/process_input.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,352 copying build/lib/omicverse/external/bulk2single/pybayesprism/joint_post.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,354 copying build/lib/omicverse/external/bulk2single/pybayesprism/extract.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,357 copying build/lib/omicverse/external/bulk2single/pybayesprism/prism.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bulk2single/pybayesprism 2026-04-05T04:04:21,360 creating build/bdist.linux-armv7l/wheel/omicverse/external/ctxcore 2026-04-05T04:04:21,362 copying build/lib/omicverse/external/ctxcore/recovery.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,364 copying build/lib/omicverse/external/ctxcore/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,366 copying build/lib/omicverse/external/ctxcore/genesig.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,369 copying build/lib/omicverse/external/ctxcore/rnkdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,371 copying build/lib/omicverse/external/ctxcore/ctdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,374 copying build/lib/omicverse/external/ctxcore/aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,377 copying build/lib/omicverse/external/ctxcore/datatypes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,380 copying build/lib/omicverse/external/ctxcore/binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/ctxcore 2026-04-05T04:04:21,382 copying build/lib/omicverse/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external 2026-04-05T04:04:21,385 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo 2026-04-05T04:04:21,386 copying build/lib/omicverse/external/latentvelo/trainer_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,389 copying build/lib/omicverse/external/latentvelo/anvi_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,391 copying build/lib/omicverse/external/latentvelo/trainer_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,394 copying build/lib/omicverse/external/latentvelo/path_regularization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,396 copying build/lib/omicverse/external/latentvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,398 copying build/lib/omicverse/external/latentvelo/atac_dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,400 copying build/lib/omicverse/external/latentvelo/output_results.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,404 copying build/lib/omicverse/external/latentvelo/collate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,406 copying build/lib/omicverse/external/latentvelo/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,408 copying build/lib/omicverse/external/latentvelo/tl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,411 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/tools 2026-04-05T04:04:21,412 copying build/lib/omicverse/external/latentvelo/tools/trad_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-05T04:04:21,415 copying build/lib/omicverse/external/latentvelo/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-05T04:04:21,417 copying build/lib/omicverse/external/latentvelo/tools/batch_correction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-05T04:04:21,419 copying build/lib/omicverse/external/latentvelo/tools/check_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-05T04:04:21,421 copying build/lib/omicverse/external/latentvelo/tools/cell_trajectories.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/tools 2026-04-05T04:04:21,424 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/plotting 2026-04-05T04:04:21,426 copying build/lib/omicverse/external/latentvelo/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-05T04:04:21,428 copying build/lib/omicverse/external/latentvelo/plotting/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-05T04:04:21,430 copying build/lib/omicverse/external/latentvelo/plotting/scatter_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/plotting 2026-04-05T04:04:21,433 copying build/lib/omicverse/external/latentvelo/pl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,435 copying build/lib/omicverse/external/latentvelo/dataloader_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,437 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/evaluation 2026-04-05T04:04:21,439 copying build/lib/omicverse/external/latentvelo/evaluation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-05T04:04:21,441 copying build/lib/omicverse/external/latentvelo/evaluation/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-05T04:04:21,444 copying build/lib/omicverse/external/latentvelo/evaluation/run_metric.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/evaluation 2026-04-05T04:04:21,447 copying build/lib/omicverse/external/latentvelo/dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,449 copying build/lib/omicverse/external/latentvelo/velocity_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,451 copying build/lib/omicverse/external/latentvelo/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,454 copying build/lib/omicverse/external/latentvelo/trainer_anvi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,456 copying build/lib/omicverse/external/latentvelo/anvi_dataloader_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,458 copying build/lib/omicverse/external/latentvelo/trainer_anvi_nogcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,461 copying build/lib/omicverse/external/latentvelo/ev.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,463 copying build/lib/omicverse/external/latentvelo/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,466 creating build/bdist.linux-armv7l/wheel/omicverse/external/latentvelo/models 2026-04-05T04:04:21,467 copying build/lib/omicverse/external/latentvelo/models/annot_vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,471 copying build/lib/omicverse/external/latentvelo/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,473 copying build/lib/omicverse/external/latentvelo/models/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,475 copying build/lib/omicverse/external/latentvelo/models/atac_reg_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,478 copying build/lib/omicverse/external/latentvelo/models/vae_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,482 copying build/lib/omicverse/external/latentvelo/models/refine_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,485 copying build/lib/omicverse/external/latentvelo/models/velocity_field.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,488 copying build/lib/omicverse/external/latentvelo/models/gclayer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo/models 2026-04-05T04:04:21,490 copying build/lib/omicverse/external/latentvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/latentvelo 2026-04-05T04:04:21,494 creating build/bdist.linux-armv7l/wheel/omicverse/external/starfysh 2026-04-05T04:04:21,495 copying build/lib/omicverse/external/starfysh/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,497 copying build/lib/omicverse/external/starfysh/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,500 copying build/lib/omicverse/external/starfysh/dataloader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,502 copying build/lib/omicverse/external/starfysh/AA.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,506 copying build/lib/omicverse/external/starfysh/gener_img.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,508 copying build/lib/omicverse/external/starfysh/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,511 copying build/lib/omicverse/external/starfysh/post_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,514 copying build/lib/omicverse/external/starfysh/utils_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,517 copying build/lib/omicverse/external/starfysh/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/starfysh 2026-04-05T04:04:21,521 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON 2026-04-05T04:04:21,522 copying build/lib/omicverse/external/CEFCON/CEFCON.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,525 creating build/bdist.linux-armv7l/wheel/omicverse/external/CEFCON/resources 2026-04-05T04:04:21,527 copying build/lib/omicverse/external/CEFCON/resources/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-05T04:04:21,529 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-05T04:04:21,531 copying build/lib/omicverse/external/CEFCON/resources/mm_mgi_tfs.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-05T04:04:21,535 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-05T04:04:21,538 copying build/lib/omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON/resources 2026-04-05T04:04:21,541 copying build/lib/omicverse/external/CEFCON/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,543 copying build/lib/omicverse/external/CEFCON/cefcon_result_object.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,547 copying build/lib/omicverse/external/CEFCON/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,550 copying build/lib/omicverse/external/CEFCON/cell_lineage_GRN.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,553 copying build/lib/omicverse/external/CEFCON/driver_regulators.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,557 copying build/lib/omicverse/external/CEFCON/datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,561 copying build/lib/omicverse/external/CEFCON/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,565 copying build/lib/omicverse/external/CEFCON/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CEFCON 2026-04-05T04:04:21,569 creating build/bdist.linux-armv7l/wheel/omicverse/external/gaston 2026-04-05T04:04:21,571 copying build/lib/omicverse/external/gaston/binning_and_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,574 copying build/lib/omicverse/external/gaston/isodepth_scaling.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,576 copying build/lib/omicverse/external/gaston/model_selection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,578 copying build/lib/omicverse/external/gaston/spatial_gene_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,581 copying build/lib/omicverse/external/gaston/filter_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,584 copying build/lib/omicverse/external/gaston/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,587 copying build/lib/omicverse/external/gaston/parse_adata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,589 copying build/lib/omicverse/external/gaston/dp_related.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,593 copying build/lib/omicverse/external/gaston/cluster_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,595 copying build/lib/omicverse/external/gaston/run_slurm_scripts.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,598 copying build/lib/omicverse/external/gaston/restrict_spots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,601 copying build/lib/omicverse/external/gaston/segmented_fit.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,604 copying build/lib/omicverse/external/gaston/plot_cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,607 copying build/lib/omicverse/external/gaston/process_NN_output.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,610 copying build/lib/omicverse/external/gaston/neural_net.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,612 copying build/lib/omicverse/external/gaston/pos_encoding.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gaston 2026-04-05T04:04:21,616 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan 2026-04-05T04:04:21,617 copying build/lib/omicverse/external/scMulan/scMulan.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-05T04:04:21,621 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/utils 2026-04-05T04:04:21,622 copying build/lib/omicverse/external/scMulan/utils/hf_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-04-05T04:04:21,625 copying build/lib/omicverse/external/scMulan/utils/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/utils 2026-04-05T04:04:21,628 copying build/lib/omicverse/external/scMulan/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-05T04:04:21,631 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference 2026-04-05T04:04:21,633 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:21,635 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/pyGSUni.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:21,638 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/GeneSymbolRef_upd0731.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:22,157 copying build/lib/omicverse/external/scMulan/reference/GeneSymbolUniform/total_gene_list_42117.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/reference/GeneSymbolUniform 2026-04-05T04:04:22,185 creating build/bdist.linux-armv7l/wheel/omicverse/external/scMulan/model 2026-04-05T04:04:22,186 copying build/lib/omicverse/external/scMulan/model/model_kvcache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-04-05T04:04:22,189 copying build/lib/omicverse/external/scMulan/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan/model 2026-04-05T04:04:22,191 copying build/lib/omicverse/external/scMulan/scMulan_npu.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scMulan 2026-04-05T04:04:22,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT 2026-04-05T04:04:22,196 copying build/lib/omicverse/external/STT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT 2026-04-05T04:04:22,198 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/tl 2026-04-05T04:04:22,199 copying build/lib/omicverse/external/STT/tl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-05T04:04:22,201 copying build/lib/omicverse/external/STT/tl/_construct_landscape.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-05T04:04:22,203 copying build/lib/omicverse/external/STT/tl/_dynamical_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-05T04:04:22,205 copying build/lib/omicverse/external/STT/tl/_pathway_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/tl 2026-04-05T04:04:22,208 creating build/bdist.linux-armv7l/wheel/omicverse/external/STT/pl 2026-04-05T04:04:22,209 copying build/lib/omicverse/external/STT/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-05T04:04:22,211 copying build/lib/omicverse/external/STT/pl/_networks.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-05T04:04:22,213 copying build/lib/omicverse/external/STT/pl/_plot_tensor.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-05T04:04:22,216 copying build/lib/omicverse/external/STT/pl/_plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STT/pl 2026-04-05T04:04:22,219 creating build/bdist.linux-armv7l/wheel/omicverse/external/gseapy 2026-04-05T04:04:22,220 copying build/lib/omicverse/external/gseapy/parser.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,222 copying build/lib/omicverse/external/gseapy/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,224 copying build/lib/omicverse/external/gseapy/biomart.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,226 copying build/lib/omicverse/external/gseapy/stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,228 copying build/lib/omicverse/external/gseapy/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,231 copying build/lib/omicverse/external/gseapy/algorithm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,234 copying build/lib/omicverse/external/gseapy/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,236 copying build/lib/omicverse/external/gseapy/enrichr.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,239 copying build/lib/omicverse/external/gseapy/gsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,242 copying build/lib/omicverse/external/gseapy/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gseapy 2026-04-05T04:04:22,244 creating build/bdist.linux-armv7l/wheel/omicverse/external/single 2026-04-05T04:04:22,246 creating build/bdist.linux-armv7l/wheel/omicverse/external/single/arboreto 2026-04-05T04:04:22,247 copying build/lib/omicverse/external/single/arboreto/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-05T04:04:22,249 copying build/lib/omicverse/external/single/arboreto/algo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-05T04:04:22,251 copying build/lib/omicverse/external/single/arboreto/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-05T04:04:22,254 copying build/lib/omicverse/external/single/arboreto/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/single/arboreto 2026-04-05T04:04:22,256 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco 2026-04-05T04:04:22,257 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaco/external 2026-04-05T04:04:22,259 copying build/lib/omicverse/external/spaco/external/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-04-05T04:04:22,260 copying build/lib/omicverse/external/spaco/external/lack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco/external 2026-04-05T04:04:22,263 copying build/lib/omicverse/external/spaco/mapping.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,265 copying build/lib/omicverse/external/spaco/colorization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,267 copying build/lib/omicverse/external/spaco/distance.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,270 copying build/lib/omicverse/external/spaco/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,271 copying build/lib/omicverse/external/spaco/scm.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,273 copying build/lib/omicverse/external/spaco/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,275 copying build/lib/omicverse/external/spaco/misc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,277 copying build/lib/omicverse/external/spaco/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,278 copying build/lib/omicverse/external/spaco/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaco 2026-04-05T04:04:22,282 creating build/bdist.linux-armv7l/wheel/omicverse/external/harmony 2026-04-05T04:04:22,283 copying build/lib/omicverse/external/harmony/harmony.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-05T04:04:22,286 copying build/lib/omicverse/external/harmony/lisi.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-05T04:04:22,288 copying build/lib/omicverse/external/harmony/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/harmony 2026-04-05T04:04:22,290 creating build/bdist.linux-armv7l/wheel/omicverse/external/torch_pca 2026-04-05T04:04:22,291 copying build/lib/omicverse/external/torch_pca/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,293 copying build/lib/omicverse/external/torch_pca/pca_main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,296 copying build/lib/omicverse/external/torch_pca/ncompo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,298 copying build/lib/omicverse/external/torch_pca/svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,300 copying build/lib/omicverse/external/torch_pca/sparse_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,302 copying build/lib/omicverse/external/torch_pca/random_svd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/torch_pca 2026-04-05T04:04:22,305 creating build/bdist.linux-armv7l/wheel/omicverse/external/spatrio 2026-04-05T04:04:22,306 copying build/lib/omicverse/external/spatrio/spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,309 copying build/lib/omicverse/external/spatrio/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,312 copying build/lib/omicverse/external/spatrio/evals.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,315 copying build/lib/omicverse/external/spatrio/visualization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,317 copying build/lib/omicverse/external/spatrio/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,320 copying build/lib/omicverse/external/spatrio/helper.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spatrio 2026-04-05T04:04:22,323 creating build/bdist.linux-armv7l/wheel/omicverse/external/NaiveDE 2026-04-05T04:04:22,324 copying build/lib/omicverse/external/NaiveDE/loom.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,327 copying build/lib/omicverse/external/NaiveDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,329 copying build/lib/omicverse/external/NaiveDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,332 copying build/lib/omicverse/external/NaiveDE/cell_types.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,334 copying build/lib/omicverse/external/NaiveDE/impulse.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,337 copying build/lib/omicverse/external/NaiveDE/faux_fold_change.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,339 copying build/lib/omicverse/external/NaiveDE/simulate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/NaiveDE 2026-04-05T04:04:22,342 creating build/bdist.linux-armv7l/wheel/omicverse/external/BINARY 2026-04-05T04:04:22,343 copying build/lib/omicverse/external/BINARY/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-05T04:04:22,345 copying build/lib/omicverse/external/BINARY/Model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-05T04:04:22,347 copying build/lib/omicverse/external/BINARY/Train_BINARY.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-05T04:04:22,349 copying build/lib/omicverse/external/BINARY/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/BINARY 2026-04-05T04:04:22,352 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot 2026-04-05T04:04:22,353 copying build/lib/omicverse/external/commot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot 2026-04-05T04:04:22,356 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,357 copying build/lib/omicverse/external/commot/_optimal_transport/_usot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,359 copying build/lib/omicverse/external/commot/_optimal_transport/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,361 copying build/lib/omicverse/external/commot/_optimal_transport/_unot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,363 copying build/lib/omicverse/external/commot/_optimal_transport/_cot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,366 copying build/lib/omicverse/external/commot/_optimal_transport/_unot_torch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_optimal_transport 2026-04-05T04:04:22,369 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/tools 2026-04-05T04:04:22,370 copying build/lib/omicverse/external/commot/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-05T04:04:22,372 copying build/lib/omicverse/external/commot/tools/_downstream_analysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-05T04:04:22,375 copying build/lib/omicverse/external/commot/tools/_spatial_communication.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/tools 2026-04-05T04:04:22,379 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/plotting 2026-04-05T04:04:22,380 copying build/lib/omicverse/external/commot/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-05T04:04:22,381 copying build/lib/omicverse/external/commot/plotting/_streamtube.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-05T04:04:22,384 copying build/lib/omicverse/external/commot/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/plotting 2026-04-05T04:04:22,388 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/_utils 2026-04-05T04:04:22,389 copying build/lib/omicverse/external/commot/_utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-05T04:04:22,390 copying build/lib/omicverse/external/commot/_utils/_binarization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-05T04:04:22,392 copying build/lib/omicverse/external/commot/_utils/_clustering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-05T04:04:22,394 copying build/lib/omicverse/external/commot/_utils/_similarity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-05T04:04:22,397 copying build/lib/omicverse/external/commot/_utils/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/_utils 2026-04-05T04:04:22,400 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing 2026-04-05T04:04:22,401 copying build/lib/omicverse/external/commot/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-05T04:04:22,403 copying build/lib/omicverse/external/commot/preprocessing/_infer_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-05T04:04:22,405 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data 2026-04-05T04:04:22,407 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase 2026-04-05T04:04:22,408 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:22,410 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:22,413 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:22,417 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat/CellChatDB.ligrec.zebrafish.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellChat 2026-04-05T04:04:22,421 creating build/bdist.linux-armv7l/wheel/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:22,422 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:22,426 copying build/lib/omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0/CellPhoneDBv4.0.mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing/_data/LRdatabase/CellPhoneDB_v4.0 2026-04-05T04:04:22,429 copying build/lib/omicverse/external/commot/preprocessing/_ligand_receptor_database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/commot/preprocessing 2026-04-05T04:04:22,432 creating build/bdist.linux-armv7l/wheel/omicverse/external/pyensembl 2026-04-05T04:04:22,433 copying build/lib/omicverse/external/pyensembl/exon.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,435 copying build/lib/omicverse/external/pyensembl/ensembl_versions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,437 copying build/lib/omicverse/external/pyensembl/sequence_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,439 copying build/lib/omicverse/external/pyensembl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,441 copying build/lib/omicverse/external/pyensembl/locus.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,443 copying build/lib/omicverse/external/pyensembl/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,444 copying build/lib/omicverse/external/pyensembl/locus_with_genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,446 copying build/lib/omicverse/external/pyensembl/download_cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,449 copying build/lib/omicverse/external/pyensembl/serializable.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,451 copying build/lib/omicverse/external/pyensembl/genome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,454 copying build/lib/omicverse/external/pyensembl/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,456 copying build/lib/omicverse/external/pyensembl/normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,458 copying build/lib/omicverse/external/pyensembl/common.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,460 copying build/lib/omicverse/external/pyensembl/ensembl_url_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,462 copying build/lib/omicverse/external/pyensembl/gene.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,464 copying build/lib/omicverse/external/pyensembl/species.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,467 copying build/lib/omicverse/external/pyensembl/search.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,469 copying build/lib/omicverse/external/pyensembl/reference_name.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,470 copying build/lib/omicverse/external/pyensembl/shell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,473 copying build/lib/omicverse/external/pyensembl/ensembl_release.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,475 copying build/lib/omicverse/external/pyensembl/fasta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,477 copying build/lib/omicverse/external/pyensembl/transcript.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/pyensembl 2026-04-05T04:04:22,480 creating build/bdist.linux-armv7l/wheel/omicverse/external/PyWGCNA 2026-04-05T04:04:22,481 copying build/lib/omicverse/external/PyWGCNA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-05T04:04:22,484 copying build/lib/omicverse/external/PyWGCNA/comparison.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-05T04:04:22,486 copying build/lib/omicverse/external/PyWGCNA/geneExp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-05T04:04:22,489 copying build/lib/omicverse/external/PyWGCNA/wgcna.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-05T04:04:22,495 copying build/lib/omicverse/external/PyWGCNA/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PyWGCNA 2026-04-05T04:04:22,498 creating build/bdist.linux-armv7l/wheel/omicverse/external/tosica 2026-04-05T04:04:22,499 copying build/lib/omicverse/external/tosica/customized_linear.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-05T04:04:22,501 copying build/lib/omicverse/external/tosica/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-05T04:04:22,503 copying build/lib/omicverse/external/tosica/TOSICA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-05T04:04:22,505 copying build/lib/omicverse/external/tosica/pre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-05T04:04:22,507 copying build/lib/omicverse/external/tosica/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tosica 2026-04-05T04:04:22,510 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd 2026-04-05T04:04:22,511 copying build/lib/omicverse/external/nocd/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,513 copying build/lib/omicverse/external/nocd/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,515 copying build/lib/omicverse/external/nocd/sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,517 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/nn 2026-04-05T04:04:22,518 copying build/lib/omicverse/external/nocd/nn/gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-05T04:04:22,520 copying build/lib/omicverse/external/nocd/nn/imrpoved_gcn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-05T04:04:22,521 copying build/lib/omicverse/external/nocd/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-05T04:04:22,523 copying build/lib/omicverse/external/nocd/nn/decoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/nn 2026-04-05T04:04:22,526 creating build/bdist.linux-armv7l/wheel/omicverse/external/nocd/metrics 2026-04-05T04:04:22,527 copying build/lib/omicverse/external/nocd/metrics/unsupervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-05T04:04:22,529 copying build/lib/omicverse/external/nocd/metrics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-05T04:04:22,531 copying build/lib/omicverse/external/nocd/metrics/supervised.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd/metrics 2026-04-05T04:04:22,533 copying build/lib/omicverse/external/nocd/generate.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,534 copying build/lib/omicverse/external/nocd/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,537 copying build/lib/omicverse/external/nocd/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/nocd 2026-04-05T04:04:22,539 creating build/bdist.linux-armv7l/wheel/omicverse/external/mpl_chord 2026-04-05T04:04:22,540 copying build/lib/omicverse/external/mpl_chord/gradient.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-05T04:04:22,542 copying build/lib/omicverse/external/mpl_chord/utilities.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-05T04:04:22,544 copying build/lib/omicverse/external/mpl_chord/chord_diagram.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mpl_chord 2026-04-05T04:04:22,547 creating build/bdist.linux-armv7l/wheel/omicverse/external/sude_py 2026-04-05T04:04:22,549 copying build/lib/omicverse/external/sude_py/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,551 copying build/lib/omicverse/external/sude_py/plotcluster2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,553 copying build/lib/omicverse/external/sude_py/init_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,555 copying build/lib/omicverse/external/sude_py/opt_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,557 copying build/lib/omicverse/external/sude_py/clle.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,559 copying build/lib/omicverse/external/sude_py/pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,561 copying build/lib/omicverse/external/sude_py/sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,563 copying build/lib/omicverse/external/sude_py/mds.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,565 copying build/lib/omicverse/external/sude_py/learning_s.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,568 copying build/lib/omicverse/external/sude_py/learning_l.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,570 copying build/lib/omicverse/external/sude_py/pps.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/sude_py 2026-04-05T04:04:22,573 creating build/bdist.linux-armv7l/wheel/omicverse/external/tape 2026-04-05T04:04:22,574 copying build/lib/omicverse/external/tape/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,576 copying build/lib/omicverse/external/tape/deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,578 copying build/lib/omicverse/external/tape/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,580 copying build/lib/omicverse/external/tape/simulation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,583 copying build/lib/omicverse/external/tape/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,585 copying build/lib/omicverse/external/tape/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/tape 2026-04-05T04:04:22,587 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect 2026-04-05T04:04:22,589 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/collectors 2026-04-05T04:04:22,590 copying build/lib/omicverse/external/datacollect/collectors/pdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,593 copying build/lib/omicverse/external/datacollect/collectors/dbsnp_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,595 copying build/lib/omicverse/external/datacollect/collectors/opentargets_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,598 copying build/lib/omicverse/external/datacollect/collectors/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,599 copying build/lib/omicverse/external/datacollect/collectors/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,601 copying build/lib/omicverse/external/datacollect/collectors/gtopdb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,604 copying build/lib/omicverse/external/datacollect/collectors/ensembl_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,606 copying build/lib/omicverse/external/datacollect/collectors/ucsc_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,608 copying build/lib/omicverse/external/datacollect/collectors/gnomad_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,611 copying build/lib/omicverse/external/datacollect/collectors/blast_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,613 copying build/lib/omicverse/external/datacollect/collectors/reactome_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,615 copying build/lib/omicverse/external/datacollect/collectors/clinvar_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,618 copying build/lib/omicverse/external/datacollect/collectors/geo_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,620 copying build/lib/omicverse/external/datacollect/collectors/regulomedb_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,622 copying build/lib/omicverse/external/datacollect/collectors/uniprot_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,624 copying build/lib/omicverse/external/datacollect/collectors/kegg_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,626 copying build/lib/omicverse/external/datacollect/collectors/pride_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,629 copying build/lib/omicverse/external/datacollect/collectors/alphafold_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,631 copying build/lib/omicverse/external/datacollect/collectors/string_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,633 copying build/lib/omicverse/external/datacollect/collectors/interpro_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,636 copying build/lib/omicverse/external/datacollect/collectors/gwas_catalog_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,638 copying build/lib/omicverse/external/datacollect/collectors/opentargets_genetics_collector.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/collectors 2026-04-05T04:04:22,641 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/utils 2026-04-05T04:04:22,642 copying build/lib/omicverse/external/datacollect/utils/transformers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,644 copying build/lib/omicverse/external/datacollect/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,646 copying build/lib/omicverse/external/datacollect/utils/database.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,648 copying build/lib/omicverse/external/datacollect/utils/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,651 copying build/lib/omicverse/external/datacollect/utils/logging.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,653 copying build/lib/omicverse/external/datacollect/utils/omicverse_adapters.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/utils 2026-04-05T04:04:22,655 copying build/lib/omicverse/external/datacollect/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-05T04:04:22,658 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api 2026-04-05T04:04:22,659 copying build/lib/omicverse/external/datacollect/api/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,661 copying build/lib/omicverse/external/datacollect/api/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,664 copying build/lib/omicverse/external/datacollect/api/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,666 copying build/lib/omicverse/external/datacollect/api/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,668 copying build/lib/omicverse/external/datacollect/api/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,671 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,672 copying build/lib/omicverse/external/datacollect/api/proteins/uniprot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,674 copying build/lib/omicverse/external/datacollect/api/proteins/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,676 copying build/lib/omicverse/external/datacollect/api/proteins/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,678 copying build/lib/omicverse/external/datacollect/api/proteins/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,680 copying build/lib/omicverse/external/datacollect/api/proteins/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,682 copying build/lib/omicverse/external/datacollect/api/proteins/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,684 copying build/lib/omicverse/external/datacollect/api/proteins/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/proteins 2026-04-05T04:04:22,687 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/pathways 2026-04-05T04:04:22,688 copying build/lib/omicverse/external/datacollect/api/pathways/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-05T04:04:22,690 copying build/lib/omicverse/external/datacollect/api/pathways/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-05T04:04:22,692 copying build/lib/omicverse/external/datacollect/api/pathways/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-05T04:04:22,694 copying build/lib/omicverse/external/datacollect/api/pathways/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/pathways 2026-04-05T04:04:22,697 copying build/lib/omicverse/external/datacollect/api/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,698 copying build/lib/omicverse/external/datacollect/api/alphafold.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,701 copying build/lib/omicverse/external/datacollect/api/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,703 copying build/lib/omicverse/external/datacollect/api/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,705 copying build/lib/omicverse/external/datacollect/api/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,707 copying build/lib/omicverse/external/datacollect/api/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,710 copying build/lib/omicverse/external/datacollect/api/kegg.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,712 copying build/lib/omicverse/external/datacollect/api/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,714 copying build/lib/omicverse/external/datacollect/api/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,716 copying build/lib/omicverse/external/datacollect/api/geo_fixes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,719 copying build/lib/omicverse/external/datacollect/api/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,721 copying build/lib/omicverse/external/datacollect/api/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,724 copying build/lib/omicverse/external/datacollect/api/reactome.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,727 copying build/lib/omicverse/external/datacollect/api/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,729 copying build/lib/omicverse/external/datacollect/api/string.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,732 copying build/lib/omicverse/external/datacollect/api/geo_backup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,734 copying build/lib/omicverse/external/datacollect/api/gtopdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,736 copying build/lib/omicverse/external/datacollect/api/pdb_simple.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,738 copying build/lib/omicverse/external/datacollect/api/pdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,740 copying build/lib/omicverse/external/datacollect/api/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,743 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,744 copying build/lib/omicverse/external/datacollect/api/genomics/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,746 copying build/lib/omicverse/external/datacollect/api/genomics/regulomedb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,748 copying build/lib/omicverse/external/datacollect/api/genomics/ucsc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,751 copying build/lib/omicverse/external/datacollect/api/genomics/gwas_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,753 copying build/lib/omicverse/external/datacollect/api/genomics/gnomad.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,756 copying build/lib/omicverse/external/datacollect/api/genomics/clinvar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,758 copying build/lib/omicverse/external/datacollect/api/genomics/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,760 copying build/lib/omicverse/external/datacollect/api/genomics/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/genomics 2026-04-05T04:04:22,762 copying build/lib/omicverse/external/datacollect/api/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,765 copying build/lib/omicverse/external/datacollect/api/interpro.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,767 copying build/lib/omicverse/external/datacollect/api/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,770 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,771 copying build/lib/omicverse/external/datacollect/api/expression/opentargets_genetics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,774 copying build/lib/omicverse/external/datacollect/api/expression/remap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,776 copying build/lib/omicverse/external/datacollect/api/expression/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,778 copying build/lib/omicverse/external/datacollect/api/expression/opentargets.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,780 copying build/lib/omicverse/external/datacollect/api/expression/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,782 copying build/lib/omicverse/external/datacollect/api/expression/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/expression 2026-04-05T04:04:22,784 copying build/lib/omicverse/external/datacollect/api/geo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,787 copying build/lib/omicverse/external/datacollect/api/ccre.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,790 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,791 copying build/lib/omicverse/external/datacollect/api/specialized/cbioportal.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,794 copying build/lib/omicverse/external/datacollect/api/specialized/mpd.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,796 copying build/lib/omicverse/external/datacollect/api/specialized/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,798 copying build/lib/omicverse/external/datacollect/api/specialized/worms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,801 copying build/lib/omicverse/external/datacollect/api/specialized/paleobiology.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,804 copying build/lib/omicverse/external/datacollect/api/specialized/pride.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,806 copying build/lib/omicverse/external/datacollect/api/specialized/blast.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,809 copying build/lib/omicverse/external/datacollect/api/specialized/iucn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,812 copying build/lib/omicverse/external/datacollect/api/specialized/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api/specialized 2026-04-05T04:04:22,815 copying build/lib/omicverse/external/datacollect/api/dbsnp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,818 copying build/lib/omicverse/external/datacollect/api/emdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,820 copying build/lib/omicverse/external/datacollect/api/ensembl.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,823 copying build/lib/omicverse/external/datacollect/api/jaspar.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/api 2026-04-05T04:04:22,826 copying build/lib/omicverse/external/datacollect/demo_ov_datacollect_usage.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-05T04:04:22,830 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/docs 2026-04-05T04:04:22,831 copying build/lib/omicverse/external/datacollect/docs/DATABASE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,834 copying build/lib/omicverse/external/datacollect/docs/DATA_EXPORT.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,838 copying build/lib/omicverse/external/datacollect/docs/WORKFLOWS.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,841 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,844 copying build/lib/omicverse/external/datacollect/docs/TROUBLESHOOTING.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,847 copying build/lib/omicverse/external/datacollect/docs/API_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,849 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_INTEGRATION_GUIDE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,852 copying build/lib/omicverse/external/datacollect/docs/CONFIGURATION.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,855 copying build/lib/omicverse/external/datacollect/docs/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,858 copying build/lib/omicverse/external/datacollect/docs/OMICVERSE_TUTORIAL.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,860 copying build/lib/omicverse/external/datacollect/docs/CLI_REFERENCE.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,863 copying build/lib/omicverse/external/datacollect/docs/QUICK_START.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/docs 2026-04-05T04:04:22,866 creating build/bdist.linux-armv7l/wheel/omicverse/external/datacollect/config 2026-04-05T04:04:22,867 copying build/lib/omicverse/external/datacollect/config/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-04-05T04:04:22,870 copying build/lib/omicverse/external/datacollect/config/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect/config 2026-04-05T04:04:22,872 copying build/lib/omicverse/external/datacollect/TEST_SUITE_README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-05T04:04:22,875 copying build/lib/omicverse/external/datacollect/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-05T04:04:22,878 copying build/lib/omicverse/external/datacollect/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/datacollect 2026-04-05T04:04:22,881 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig 2026-04-05T04:04:22,883 copying build/lib/omicverse/external/flowsig/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig 2026-04-05T04:04:22,886 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/utilities 2026-04-05T04:04:22,887 copying build/lib/omicverse/external/flowsig/utilities/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-04-05T04:04:22,890 copying build/lib/omicverse/external/flowsig/utilities/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/utilities 2026-04-05T04:04:22,893 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/tools 2026-04-05T04:04:22,894 copying build/lib/omicverse/external/flowsig/tools/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-05T04:04:22,895 copying build/lib/omicverse/external/flowsig/tools/_validate_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-05T04:04:22,898 copying build/lib/omicverse/external/flowsig/tools/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-05T04:04:22,900 copying build/lib/omicverse/external/flowsig/tools/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/tools 2026-04-05T04:04:22,903 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/plotting 2026-04-05T04:04:22,904 copying build/lib/omicverse/external/flowsig/plotting/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-04-05T04:04:22,906 copying build/lib/omicverse/external/flowsig/plotting/_plotting.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/plotting 2026-04-05T04:04:22,909 creating build/bdist.linux-armv7l/wheel/omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,909 copying build/lib/omicverse/external/flowsig/preprocessing/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,911 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,913 copying build/lib/omicverse/external/flowsig/preprocessing/_flow_expressions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,916 copying build/lib/omicverse/external/flowsig/preprocessing/_townes_nsf_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,918 copying build/lib/omicverse/external/flowsig/preprocessing/_gem_construction.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,920 copying build/lib/omicverse/external/flowsig/preprocessing/_spatial_blocking.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/flowsig/preprocessing 2026-04-05T04:04:22,922 creating build/bdist.linux-armv7l/wheel/omicverse/external/GNTD 2026-04-05T04:04:22,924 copying build/lib/omicverse/external/GNTD/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-05T04:04:22,926 copying build/lib/omicverse/external/GNTD/_GNTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-05T04:04:22,928 copying build/lib/omicverse/external/GNTD/_NTD.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-05T04:04:22,930 copying build/lib/omicverse/external/GNTD/_preprocessing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GNTD 2026-04-05T04:04:22,933 creating build/bdist.linux-armv7l/wheel/omicverse/external/palantir 2026-04-05T04:04:22,934 copying build/lib/omicverse/external/palantir/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,936 copying build/lib/omicverse/external/palantir/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,937 copying build/lib/omicverse/external/palantir/presults.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,940 copying build/lib/omicverse/external/palantir/plot_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,942 copying build/lib/omicverse/external/palantir/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,944 copying build/lib/omicverse/external/palantir/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,948 copying build/lib/omicverse/external/palantir/io.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,950 copying build/lib/omicverse/external/palantir/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,952 copying build/lib/omicverse/external/palantir/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,955 copying build/lib/omicverse/external/palantir/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,956 copying build/lib/omicverse/external/palantir/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/palantir 2026-04-05T04:04:22,960 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion 2026-04-05T04:04:22,961 copying build/lib/omicverse/external/scdiffusion/classifier_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-05T04:04:22,963 copying build/lib/omicverse/external/scdiffusion/cell_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-05T04:04:22,966 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,967 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/resample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,969 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,971 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,973 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/script_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,975 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/gaussian_diffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,978 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/train_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,980 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_pbmc.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,982 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/fp16_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,984 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/dist_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,986 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_WOT.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,988 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_sapiens.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,989 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/respace.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,992 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_lung.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,994 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/nn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,996 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:22,998 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/logger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:23,001 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/losses.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:23,003 copying build/lib/omicverse/external/scdiffusion/guided_diffusion/cell_datasets_muris.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/guided_diffusion 2026-04-05T04:04:23,005 copying build/lib/omicverse/external/scdiffusion/classifier_sample.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-05T04:04:23,008 creating build/bdist.linux-armv7l/wheel/omicverse/external/scdiffusion/VAE 2026-04-05T04:04:23,009 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-05T04:04:23,011 copying build/lib/omicverse/external/scdiffusion/VAE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-05T04:04:23,012 copying build/lib/omicverse/external/scdiffusion/VAE/VAE_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion/VAE 2026-04-05T04:04:23,015 copying build/lib/omicverse/external/scdiffusion/cell_train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scdiffusion 2026-04-05T04:04:23,017 creating build/bdist.linux-armv7l/wheel/omicverse/external/umap_pytorch 2026-04-05T04:04:23,018 copying build/lib/omicverse/external/umap_pytorch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-05T04:04:23,020 copying build/lib/omicverse/external/umap_pytorch/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-05T04:04:23,022 copying build/lib/omicverse/external/umap_pytorch/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-05T04:04:23,024 copying build/lib/omicverse/external/umap_pytorch/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-05T04:04:23,026 copying build/lib/omicverse/external/umap_pytorch/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/umap_pytorch 2026-04-05T04:04:23,028 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST 2026-04-05T04:04:23,029 copying build/lib/omicverse/external/CAST/CAST_Projection.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,032 copying build/lib/omicverse/external/CAST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,034 copying build/lib/omicverse/external/CAST/CAST_Mark.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,036 copying build/lib/omicverse/external/CAST/visualize.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,038 copying build/lib/omicverse/external/CAST/CAST_Stack.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,041 copying build/lib/omicverse/external/CAST/main.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,044 creating build/bdist.linux-armv7l/wheel/omicverse/external/CAST/model 2026-04-05T04:04:23,045 copying build/lib/omicverse/external/CAST/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-05T04:04:23,046 copying build/lib/omicverse/external/CAST/model/model_GCNII.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-05T04:04:23,049 copying build/lib/omicverse/external/CAST/model/aug.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST/model 2026-04-05T04:04:23,051 copying build/lib/omicverse/external/CAST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/CAST 2026-04-05T04:04:23,054 creating build/bdist.linux-armv7l/wheel/omicverse/external/VIA 2026-04-05T04:04:23,055 copying build/lib/omicverse/external/VIA/utils_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,058 copying build/lib/omicverse/external/VIA/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,060 copying build/lib/omicverse/external/VIA/windmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,062 copying build/lib/omicverse/external/VIA/datasets_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,065 copying build/lib/omicverse/external/VIA/plotting_via_ov.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,071 copying build/lib/omicverse/external/VIA/plotting_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,077 copying build/lib/omicverse/external/VIA/core.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/VIA 2026-04-05T04:04:23,083 creating build/bdist.linux-armv7l/wheel/omicverse/external/topact 2026-04-05T04:04:23,085 copying build/lib/omicverse/external/topact/countdata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,088 copying build/lib/omicverse/external/topact/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,090 copying build/lib/omicverse/external/topact/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,093 copying build/lib/omicverse/external/topact/spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,096 copying build/lib/omicverse/external/topact/constantlookuplist.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,098 copying build/lib/omicverse/external/topact/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,101 copying build/lib/omicverse/external/topact/densetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,103 copying build/lib/omicverse/external/topact/sparsetools.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/topact 2026-04-05T04:04:23,105 creating build/bdist.linux-armv7l/wheel/omicverse/external/gtfparse 2026-04-05T04:04:23,107 copying build/lib/omicverse/external/gtfparse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-05T04:04:23,109 copying build/lib/omicverse/external/gtfparse/create_missing_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-05T04:04:23,111 copying build/lib/omicverse/external/gtfparse/parsing_error.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-05T04:04:23,113 copying build/lib/omicverse/external/gtfparse/attribute_parsing.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-05T04:04:23,116 copying build/lib/omicverse/external/gtfparse/read_gtf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/gtfparse 2026-04-05T04:04:23,119 creating build/bdist.linux-armv7l/wheel/omicverse/external/PROST 2026-04-05T04:04:23,120 copying build/lib/omicverse/external/PROST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,123 copying build/lib/omicverse/external/PROST/calculate_PI.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,125 copying build/lib/omicverse/external/PROST/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,128 copying build/lib/omicverse/external/PROST/PROST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,131 copying build/lib/omicverse/external/PROST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,133 copying build/lib/omicverse/external/PROST/layers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,136 copying build/lib/omicverse/external/PROST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/PROST 2026-04-05T04:04:23,140 creating build/bdist.linux-armv7l/wheel/omicverse/external/bin2cell 2026-04-05T04:04:23,141 copying build/lib/omicverse/external/bin2cell/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-04-05T04:04:23,143 copying build/lib/omicverse/external/bin2cell/bin2cell.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/bin2cell 2026-04-05T04:04:23,149 creating build/bdist.linux-armv7l/wheel/omicverse/external/space 2026-04-05T04:04:23,151 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location 2026-04-05T04:04:23,153 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:23,154 copying build/lib/omicverse/external/space/cell2location/cell_comm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:23,156 copying build/lib/omicverse/external/space/cell2location/cell_comm/around_target.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cell_comm 2026-04-05T04:04:23,159 copying build/lib/omicverse/external/space/cell2location/run_colocation.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-04-05T04:04:23,162 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/utils 2026-04-05T04:04:23,163 copying build/lib/omicverse/external/space/cell2location/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-05T04:04:23,166 copying build/lib/omicverse/external/space/cell2location/utils/filtering.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-05T04:04:23,168 copying build/lib/omicverse/external/space/cell2location/utils/_spatial_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/utils 2026-04-05T04:04:23,170 copying build/lib/omicverse/external/space/cell2location/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location 2026-04-05T04:04:23,173 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,175 copying build/lib/omicverse/external/space/cell2location/plt/mapping_video.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,178 copying build/lib/omicverse/external/space/cell2location/plt/plot_factor_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,180 copying build/lib/omicverse/external/space/cell2location/plt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,182 copying build/lib/omicverse/external/space/cell2location/plt/plot_expected_vs_obs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,184 copying build/lib/omicverse/external/space/cell2location/plt/plot_in_1D.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,187 copying build/lib/omicverse/external/space/cell2location/plt/RotateCrop.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,189 copying build/lib/omicverse/external/space/cell2location/plt/plot_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,192 copying build/lib/omicverse/external/space/cell2location/plt/plot_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/plt 2026-04-05T04:04:23,195 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/nn 2026-04-05T04:04:23,196 copying build/lib/omicverse/external/space/cell2location/nn/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-05T04:04:23,197 copying build/lib/omicverse/external/space/cell2location/nn/fclayers.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-05T04:04:23,200 copying build/lib/omicverse/external/space/cell2location/nn/fclayers_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/nn 2026-04-05T04:04:23,202 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,203 copying build/lib/omicverse/external/space/cell2location/distributions/NegativeBinomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,206 copying build/lib/omicverse/external/space/cell2location/distributions/transforms.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,208 copying build/lib/omicverse/external/space/cell2location/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,209 copying build/lib/omicverse/external/space/cell2location/distributions/AutoAmortisedNormalMessenger.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,212 copying build/lib/omicverse/external/space/cell2location/distributions/AutoNormalEncoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/distributions 2026-04-05T04:04:23,215 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models 2026-04-05T04:04:23,216 copying build/lib/omicverse/external/space/cell2location/models/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,218 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,219 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_mixin.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,222 copying build/lib/omicverse/external/space/cell2location/models/base/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,223 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_loc_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,225 copying build/lib/omicverse/external/space/cell2location/models/base/_pyro_base_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,227 copying build/lib/omicverse/external/space/cell2location/models/base/base_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/base 2026-04-05T04:04:23,230 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:23,231 copying build/lib/omicverse/external/space/cell2location/models/reference/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:23,233 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:23,236 copying build/lib/omicverse/external/space/cell2location/models/reference/_reference_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/reference 2026-04-05T04:04:23,238 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,241 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,243 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,246 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:23,247 copying build/lib/omicverse/external/space/cell2location/models/simplified/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:23,249 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_mg_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:23,251 copying build/lib/omicverse/external/space/cell2location/models/simplified/_cell2location_v3_no_factorisation_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/simplified 2026-04-05T04:04:23,254 copying build/lib/omicverse/external/space/cell2location/models/_cell2location_WTA_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,256 copying build/lib/omicverse/external/space/cell2location/models/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models 2026-04-05T04:04:23,258 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:23,259 copying build/lib/omicverse/external/space/cell2location/models/downstream/CoLocatedGroupsSklearnNMF.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:23,262 copying build/lib/omicverse/external/space/cell2location/models/downstream/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:23,264 copying build/lib/omicverse/external/space/cell2location/models/downstream/ArchetypalAnalysis.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/models/downstream 2026-04-05T04:04:23,267 creating build/bdist.linux-armv7l/wheel/omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:23,268 copying build/lib/omicverse/external/space/cell2location/cluster_averages/markers_by_hierarhy.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:23,270 copying build/lib/omicverse/external/space/cell2location/cluster_averages/cluster_averages.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:23,272 copying build/lib/omicverse/external/space/cell2location/cluster_averages/select_features.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:23,274 copying build/lib/omicverse/external/space/cell2location/cluster_averages/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/space/cell2location/cluster_averages 2026-04-05T04:04:23,277 creating build/bdist.linux-armv7l/wheel/omicverse/external/forcedirect2 2026-04-05T04:04:23,278 copying build/lib/omicverse/external/forcedirect2/forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,281 copying build/lib/omicverse/external/forcedirect2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,282 copying build/lib/omicverse/external/forcedirect2/setup.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,284 copying build/lib/omicverse/external/forcedirect2/fa2util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,286 copying build/lib/omicverse/external/forcedirect2/t_forceatlas2.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,288 copying build/lib/omicverse/external/forcedirect2/compile.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,291 copying build/lib/omicverse/external/forcedirect2/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/external/forcedirect2 2026-04-05T04:04:23,293 creating build/bdist.linux-armv7l/wheel/omicverse/external/spaceflow 2026-04-05T04:04:23,294 copying build/lib/omicverse/external/spaceflow/_util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-05T04:04:23,296 copying build/lib/omicverse/external/spaceflow/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-05T04:04:23,298 copying build/lib/omicverse/external/spaceflow/_SpaceFlow.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/spaceflow 2026-04-05T04:04:23,301 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,302 copying build/lib/omicverse/external/STAGATE_pyG/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,304 copying build/lib/omicverse/external/STAGATE_pyG/Train_STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,306 copying build/lib/omicverse/external/STAGATE_pyG/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,308 copying build/lib/omicverse/external/STAGATE_pyG/STAGATE.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,310 copying build/lib/omicverse/external/STAGATE_pyG/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAGATE_pyG 2026-04-05T04:04:23,312 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2 2026-04-05T04:04:23,314 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/simulate 2026-04-05T04:04:23,315 copying build/lib/omicverse/external/mofapy2/simulate/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-04-05T04:04:23,317 copying build/lib/omicverse/external/mofapy2/simulate/simulate_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/simulate 2026-04-05T04:04:23,319 copying build/lib/omicverse/external/mofapy2/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-05T04:04:23,320 copying build/lib/omicverse/external/mofapy2/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-05T04:04:23,322 copying build/lib/omicverse/external/mofapy2/version.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2 2026-04-05T04:04:23,324 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,325 copying build/lib/omicverse/external/mofapy2/build_model/train_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,327 copying build/lib/omicverse/external/mofapy2/build_model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,329 copying build/lib/omicverse/external/mofapy2/build_model/save_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,331 copying build/lib/omicverse/external/mofapy2/build_model/build_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,334 copying build/lib/omicverse/external/mofapy2/build_model/init_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,337 copying build/lib/omicverse/external/mofapy2/build_model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/build_model 2026-04-05T04:04:23,339 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run 2026-04-05T04:04:23,340 copying build/lib/omicverse/external/mofapy2/run/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-04-05T04:04:23,343 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:23,344 copying build/lib/omicverse/external/mofapy2/run/test_data/view_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:23,353 copying build/lib/omicverse/external/mofapy2/run/test_data/view_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:23,362 copying build/lib/omicverse/external/mofapy2/run/test_data/view_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data 2026-04-05T04:04:23,371 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:23,372 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_2.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:23,390 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_0.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:23,409 copying build/lib/omicverse/external/mofapy2/run/test_data/with_nas/500_1.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run/test_data/with_nas 2026-04-05T04:04:23,425 copying build/lib/omicverse/external/mofapy2/run/entry_point.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/run 2026-04-05T04:04:23,429 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core 2026-04-05T04:04:23,430 copying build/lib/omicverse/external/mofapy2/core/gpu_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-05T04:04:23,432 copying build/lib/omicverse/external/mofapy2/core/BayesNet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-05T04:04:23,435 copying build/lib/omicverse/external/mofapy2/core/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-05T04:04:23,436 copying build/lib/omicverse/external/mofapy2/core/gp_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-05T04:04:23,439 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,440 copying build/lib/omicverse/external/mofapy2/core/nodes/Alpha_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,443 copying build/lib/omicverse/external/mofapy2/core/nodes/Kg_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,445 copying build/lib/omicverse/external/mofapy2/core/nodes/W_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,447 copying build/lib/omicverse/external/mofapy2/core/nodes/nongaussian_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,450 copying build/lib/omicverse/external/mofapy2/core/nodes/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,451 copying build/lib/omicverse/external/mofapy2/core/nodes/U_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,454 copying build/lib/omicverse/external/mofapy2/core/nodes/Kc_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,456 copying build/lib/omicverse/external/mofapy2/core/nodes/Sigma_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,459 copying build/lib/omicverse/external/mofapy2/core/nodes/ZgU_node.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,461 copying build/lib/omicverse/external/mofapy2/core/nodes/Tau_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,463 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,466 copying build/lib/omicverse/external/mofapy2/core/nodes/multiview_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,469 copying build/lib/omicverse/external/mofapy2/core/nodes/Theta_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,471 copying build/lib/omicverse/external/mofapy2/core/nodes/basic_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,473 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP_mv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,476 copying build/lib/omicverse/external/mofapy2/core/nodes/variational_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,478 copying build/lib/omicverse/external/mofapy2/core/nodes/Z_nodes_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,480 copying build/lib/omicverse/external/mofapy2/core/nodes/Y_nodes.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/nodes 2026-04-05T04:04:23,483 creating build/bdist.linux-armv7l/wheel/omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,484 copying build/lib/omicverse/external/mofapy2/core/distributions/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,486 copying build/lib/omicverse/external/mofapy2/core/distributions/multi_task_GP.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,489 copying build/lib/omicverse/external/mofapy2/core/distributions/univariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,490 copying build/lib/omicverse/external/mofapy2/core/distributions/basic_distributions.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,492 copying build/lib/omicverse/external/mofapy2/core/distributions/poisson.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,494 copying build/lib/omicverse/external/mofapy2/core/distributions/binomial.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,496 copying build/lib/omicverse/external/mofapy2/core/distributions/multivariate_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,498 copying build/lib/omicverse/external/mofapy2/core/distributions/gamma.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,500 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,502 copying build/lib/omicverse/external/mofapy2/core/distributions/bernoulli_gaussian.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,504 copying build/lib/omicverse/external/mofapy2/core/distributions/beta.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core/distributions 2026-04-05T04:04:23,506 copying build/lib/omicverse/external/mofapy2/core/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/mofapy2/core 2026-04-05T04:04:23,509 creating build/bdist.linux-armv7l/wheel/omicverse/external/GraphST 2026-04-05T04:04:23,510 copying build/lib/omicverse/external/GraphST/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,512 copying build/lib/omicverse/external/GraphST/readme.txt -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,514 copying build/lib/omicverse/external/GraphST/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,516 copying build/lib/omicverse/external/GraphST/GraphST.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,519 copying build/lib/omicverse/external/GraphST/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,521 copying build/lib/omicverse/external/GraphST/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/GraphST 2026-04-05T04:04:23,524 creating build/bdist.linux-armv7l/wheel/omicverse/external/SpatialDE 2026-04-05T04:04:23,525 copying build/lib/omicverse/external/SpatialDE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,527 copying build/lib/omicverse/external/SpatialDE/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,529 copying build/lib/omicverse/external/SpatialDE/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,531 copying build/lib/omicverse/external/SpatialDE/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,533 copying build/lib/omicverse/external/SpatialDE/anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,535 copying build/lib/omicverse/external/SpatialDE/aha.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,537 copying build/lib/omicverse/external/SpatialDE/aeh.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/SpatialDE 2026-04-05T04:04:23,540 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT 2026-04-05T04:04:23,540 copying build/lib/omicverse/external/scSLAT/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-05T04:04:23,542 copying build/lib/omicverse/external/scSLAT/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-05T04:04:23,545 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/viz 2026-04-05T04:04:23,546 copying build/lib/omicverse/external/scSLAT/viz/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-05T04:04:23,548 copying build/lib/omicverse/external/scSLAT/viz/color.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-05T04:04:23,549 copying build/lib/omicverse/external/scSLAT/viz/multi_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/viz 2026-04-05T04:04:23,553 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model 2026-04-05T04:04:23,554 copying build/lib/omicverse/external/scSLAT/model/batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,556 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:23,557 copying build/lib/omicverse/external/scSLAT/model/prematch/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:23,559 copying build/lib/omicverse/external/scSLAT/model/prematch/icp.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:23,561 copying build/lib/omicverse/external/scSLAT/model/prematch/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/prematch 2026-04-05T04:04:23,564 copying build/lib/omicverse/external/scSLAT/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,566 copying build/lib/omicverse/external/scSLAT/model/graphmodel.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,568 creating build/bdist.linux-armv7l/wheel/omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:23,569 copying build/lib/omicverse/external/scSLAT/model/graphconv/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:23,571 copying build/lib/omicverse/external/scSLAT/model/graphconv/combnet.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model/graphconv 2026-04-05T04:04:23,573 copying build/lib/omicverse/external/scSLAT/model/loaddata.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,575 copying build/lib/omicverse/external/scSLAT/model/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,577 copying build/lib/omicverse/external/scSLAT/model/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,579 copying build/lib/omicverse/external/scSLAT/model/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,581 copying build/lib/omicverse/external/scSLAT/model/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT/model 2026-04-05T04:04:23,583 copying build/lib/omicverse/external/scSLAT/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/scSLAT 2026-04-05T04:04:23,586 creating build/bdist.linux-armv7l/wheel/omicverse/external/hotspot 2026-04-05T04:04:23,587 copying build/lib/omicverse/external/hotspot/none_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,588 copying build/lib/omicverse/external/hotspot/plots.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,591 copying build/lib/omicverse/external/hotspot/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,592 copying build/lib/omicverse/external/hotspot/hotspot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,595 copying build/lib/omicverse/external/hotspot/modules.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,598 copying build/lib/omicverse/external/hotspot/bernoulli_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,600 copying build/lib/omicverse/external/hotspot/local_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,603 copying build/lib/omicverse/external/hotspot/knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,606 copying build/lib/omicverse/external/hotspot/sim_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,608 copying build/lib/omicverse/external/hotspot/local_stats_pairs.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,611 copying build/lib/omicverse/external/hotspot/normal_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,613 copying build/lib/omicverse/external/hotspot/danb_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,615 copying build/lib/omicverse/external/hotspot/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/hotspot 2026-04-05T04:04:23,618 creating build/bdist.linux-armv7l/wheel/omicverse/external/graphvelo 2026-04-05T04:04:23,620 copying build/lib/omicverse/external/graphvelo/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,622 copying build/lib/omicverse/external/graphvelo/mo.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,625 copying build/lib/omicverse/external/graphvelo/metrics.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,628 copying build/lib/omicverse/external/graphvelo/plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,632 copying build/lib/omicverse/external/graphvelo/gam.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,635 copying build/lib/omicverse/external/graphvelo/tangent_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,637 copying build/lib/omicverse/external/graphvelo/graph_velocity.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,640 copying build/lib/omicverse/external/graphvelo/kernel_density_smooth.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,643 copying build/lib/omicverse/external/graphvelo/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/graphvelo 2026-04-05T04:04:23,647 creating build/bdist.linux-armv7l/wheel/omicverse/external/cnmf 2026-04-05T04:04:23,648 copying build/lib/omicverse/external/cnmf/cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-04-05T04:04:23,653 copying build/lib/omicverse/external/cnmf/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/cnmf 2026-04-05T04:04:23,657 creating build/bdist.linux-armv7l/wheel/omicverse/external/STAligner 2026-04-05T04:04:23,658 copying build/lib/omicverse/external/STAligner/train_STAligner.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-05T04:04:23,662 copying build/lib/omicverse/external/STAligner/gat_conv.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-05T04:04:23,665 copying build/lib/omicverse/external/STAligner/mnn_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-05T04:04:23,668 copying build/lib/omicverse/external/STAligner/STALIGNER.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-05T04:04:23,671 copying build/lib/omicverse/external/STAligner/ST_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/external/STAligner 2026-04-05T04:04:23,674 copying build/lib/omicverse/_monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:23,678 creating build/bdist.linux-armv7l/wheel/omicverse/agent 2026-04-05T04:04:23,680 copying build/lib/omicverse/agent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/agent 2026-04-05T04:04:23,683 creating build/bdist.linux-armv7l/wheel/omicverse/datasets 2026-04-05T04:04:23,685 copying build/lib/omicverse/datasets/_signatures.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-05T04:04:23,688 copying build/lib/omicverse/datasets/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-05T04:04:23,690 copying build/lib/omicverse/datasets/_datasets.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets 2026-04-05T04:04:23,696 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files 2026-04-05T04:04:23,698 copying build/lib/omicverse/datasets/data_files/human_alias_list.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-05T04:04:23,702 copying build/lib/omicverse/datasets/data_files/mart_export.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-05T04:04:23,807 copying build/lib/omicverse/datasets/data_files/smoothDatakNN.py -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-05T04:04:23,810 copying build/lib/omicverse/datasets/data_files/features_model_training_17.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-05T04:04:23,815 creating build/bdist.linux-armv7l/wheel/omicverse/datasets/data_files/TF 2026-04-05T04:04:23,816 copying build/lib/omicverse/datasets/data_files/TF/allTFs_mouse.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-05T04:04:23,819 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-05T04:04:23,834 copying build/lib/omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-05T04:04:23,848 copying build/lib/omicverse/datasets/data_files/TF/allTFs_human.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-05T04:04:23,850 copying build/lib/omicverse/datasets/data_files/TF/allTFs_zebrafish.txt -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files/TF 2026-04-05T04:04:23,870 copying build/lib/omicverse/datasets/data_files/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/datasets/data_files 2026-04-05T04:04:23,872 creating build/bdist.linux-armv7l/wheel/omicverse/bulk2single 2026-04-05T04:04:23,874 copying build/lib/omicverse/bulk2single/_single2spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,877 copying build/lib/omicverse/bulk2single/_map_utils1.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,880 copying build/lib/omicverse/bulk2single/_vae.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,882 copying build/lib/omicverse/bulk2single/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,885 copying build/lib/omicverse/bulk2single/_bulktrajblend.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,888 copying build/lib/omicverse/bulk2single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,890 copying build/lib/omicverse/bulk2single/_bulkdeconvolve.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,892 copying build/lib/omicverse/bulk2single/_bulk2single.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,895 copying build/lib/omicverse/bulk2single/_scsemi.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,898 copying build/lib/omicverse/bulk2single/_map_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk2single 2026-04-05T04:04:23,902 creating build/bdist.linux-armv7l/wheel/omicverse/utils 2026-04-05T04:04:23,904 creating build/bdist.linux-armv7l/wheel/omicverse/utils/biocontext 2026-04-05T04:04:23,905 copying build/lib/omicverse/utils/biocontext/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-05T04:04:23,907 copying build/lib/omicverse/utils/biocontext/_client.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-05T04:04:23,910 copying build/lib/omicverse/utils/biocontext/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/biocontext 2026-04-05T04:04:23,913 copying build/lib/omicverse/utils/_venn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,915 copying build/lib/omicverse/utils/skill_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,917 copying build/lib/omicverse/utils/session_notebook_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,921 copying build/lib/omicverse/utils/_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,924 copying build/lib/omicverse/utils/agent_backend_gemini.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,926 copying build/lib/omicverse/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,929 copying build/lib/omicverse/utils/agent_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,932 copying build/lib/omicverse/utils/_syn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,934 copying build/lib/omicverse/utils/_roe.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,937 copying build/lib/omicverse/utils/smart_agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,941 creating build/bdist.linux-armv7l/wheel/omicverse/utils/harness 2026-04-05T04:04:23,942 copying build/lib/omicverse/utils/harness/tool_catalog.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,945 copying build/lib/omicverse/utils/harness/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,947 copying build/lib/omicverse/utils/harness/contracts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,949 copying build/lib/omicverse/utils/harness/trace_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,952 copying build/lib/omicverse/utils/harness/runtime_state.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,955 copying build/lib/omicverse/utils/harness/cleanup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,957 copying build/lib/omicverse/utils/harness/server_cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/harness 2026-04-05T04:04:23,960 creating build/bdist.linux-armv7l/wheel/omicverse/utils/inspector 2026-04-05T04:04:23,961 copying build/lib/omicverse/utils/inspector/production_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,964 copying build/lib/omicverse/utils/inspector/inspector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,967 copying build/lib/omicverse/utils/inspector/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,969 copying build/lib/omicverse/utils/inspector/suggestion_engine.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,972 copying build/lib/omicverse/utils/inspector/agent_context_injector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,975 copying build/lib/omicverse/utils/inspector/data_state_validator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,978 copying build/lib/omicverse/utils/inspector/validators.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,981 copying build/lib/omicverse/utils/inspector/workflow_escalator.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,984 copying build/lib/omicverse/utils/inspector/examples.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,986 copying build/lib/omicverse/utils/inspector/llm_formatter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,989 copying build/lib/omicverse/utils/inspector/prerequisite_checker.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,992 copying build/lib/omicverse/utils/inspector/auto_prerequisite_inserter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,994 copying build/lib/omicverse/utils/inspector/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/inspector 2026-04-05T04:04:23,997 copying build/lib/omicverse/utils/_enum.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:23,999 copying build/lib/omicverse/utils/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,001 copying build/lib/omicverse/utils/agent_backend_dashscope.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,003 copying build/lib/omicverse/utils/_lsi.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,006 creating build/bdist.linux-armv7l/wheel/omicverse/utils/verifier 2026-04-05T04:04:24,007 copying build/lib/omicverse/utils/verifier/notebook_task_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,010 copying build/lib/omicverse/utils/verifier/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,012 copying build/lib/omicverse/utils/verifier/skill_description_quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,015 copying build/lib/omicverse/utils/verifier/llm_skill_selector.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,018 copying build/lib/omicverse/utils/verifier/skill_description_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,020 copying build/lib/omicverse/utils/verifier/end_to_end_verifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,023 copying build/lib/omicverse/utils/verifier/__main__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,025 copying build/lib/omicverse/utils/verifier/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,028 copying build/lib/omicverse/utils/verifier/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,031 copying build/lib/omicverse/utils/verifier/data_structures.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/verifier 2026-04-05T04:04:24,034 copying build/lib/omicverse/utils/agent_backend_streaming.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,037 copying build/lib/omicverse/utils/agent_reporter.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,039 copying build/lib/omicverse/utils/_mde.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,041 copying build/lib/omicverse/utils/agent_backend_anthropic.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,044 copying build/lib/omicverse/utils/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,047 copying build/lib/omicverse/utils/model_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,050 copying build/lib/omicverse/utils/_scice.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,053 copying build/lib/omicverse/utils/context_compactor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,055 copying build/lib/omicverse/utils/session_history.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,058 copying build/lib/omicverse/utils/agent_backend_common.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,060 copying build/lib/omicverse/utils/_neighboors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,063 copying build/lib/omicverse/utils/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,066 copying build/lib/omicverse/utils/filesystem_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,069 copying build/lib/omicverse/utils/_odds_ratio.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,072 copying build/lib/omicverse/utils/_analytics_sender.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,075 copying build/lib/omicverse/utils/_genomics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,077 copying build/lib/omicverse/utils/_plot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,079 copying build/lib/omicverse/utils/agent_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,083 creating build/bdist.linux-armv7l/wheel/omicverse/utils/ovagent 2026-04-05T04:04:24,084 copying build/lib/omicverse/utils/ovagent/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,087 copying build/lib/omicverse/utils/ovagent/turn_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,090 copying build/lib/omicverse/utils/ovagent/run_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,093 copying build/lib/omicverse/utils/ovagent/tool_scheduler.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,096 copying build/lib/omicverse/utils/ovagent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,098 copying build/lib/omicverse/utils/ovagent/tool_runtime_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,100 copying build/lib/omicverse/utils/ovagent/turn_artifacts.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,102 copying build/lib/omicverse/utils/ovagent/bootstrap.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,105 copying build/lib/omicverse/utils/ovagent/protocol.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,107 copying build/lib/omicverse/utils/ovagent/workflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,109 copying build/lib/omicverse/utils/ovagent/analysis_transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,111 copying build/lib/omicverse/utils/ovagent/codegen_tool_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,113 copying build/lib/omicverse/utils/ovagent/event_stream.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,116 copying build/lib/omicverse/utils/ovagent/turn_followup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,118 copying build/lib/omicverse/utils/ovagent/subagent_controller.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,121 copying build/lib/omicverse/utils/ovagent/codegen_pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,123 copying build/lib/omicverse/utils/ovagent/analysis_executor.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,125 copying build/lib/omicverse/utils/ovagent/tool_runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,128 copying build/lib/omicverse/utils/ovagent/prompt_builder.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,130 copying build/lib/omicverse/utils/ovagent/registry_scanner.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,133 copying build/lib/omicverse/utils/ovagent/context_budget.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,135 copying build/lib/omicverse/utils/ovagent/session_facade.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,137 copying build/lib/omicverse/utils/ovagent/tool_runtime_io.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,139 copying build/lib/omicverse/utils/ovagent/analysis_diagnostics.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,142 copying build/lib/omicverse/utils/ovagent/session_context.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,144 copying build/lib/omicverse/utils/ovagent/auth.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,146 copying build/lib/omicverse/utils/ovagent/tool_runtime_exec.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,149 copying build/lib/omicverse/utils/ovagent/tool_runtime_workspace.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,151 copying build/lib/omicverse/utils/ovagent/permission_policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,153 copying build/lib/omicverse/utils/ovagent/analysis_sandbox.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,156 copying build/lib/omicverse/utils/ovagent/repair_loop.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,158 copying build/lib/omicverse/utils/ovagent/prompt_templates.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,160 copying build/lib/omicverse/utils/ovagent/tool_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils/ovagent 2026-04-05T04:04:24,163 copying build/lib/omicverse/utils/agent_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,165 copying build/lib/omicverse/utils/_anndata_rust_patch.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,168 copying build/lib/omicverse/utils/_gene_id_conversion.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,171 copying build/lib/omicverse/utils/_resolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,174 copying build/lib/omicverse/utils/_paga.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,176 copying build/lib/omicverse/utils/_shannon_diversity.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,179 copying build/lib/omicverse/utils/_ovagent_lookup.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,181 copying build/lib/omicverse/utils/agent_errors.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,183 copying build/lib/omicverse/utils/agent_backend_openai.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,186 copying build/lib/omicverse/utils/_knn.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,188 copying build/lib/omicverse/utils/_scatterplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/utils 2026-04-05T04:04:24,190 copying build/lib/omicverse/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:24,193 creating build/bdist.linux-armv7l/wheel/omicverse/llm 2026-04-05T04:04:24,194 copying build/lib/omicverse/llm/external_model_stubs.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,196 copying build/lib/omicverse/llm/scmulan_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,199 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE 2026-04-05T04:04:24,199 copying build/lib/omicverse/llm/UCE/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,201 copying build/lib/omicverse/llm/UCE/eval_data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,204 creating build/bdist.linux-armv7l/wheel/omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,205 copying build/lib/omicverse/llm/UCE/data_proc/data_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,207 copying build/lib/omicverse/llm/UCE/data_proc/gene_embeddings.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,209 copying build/lib/omicverse/llm/UCE/data_proc/generate_reduced_chrom_files.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,211 copying build/lib/omicverse/llm/UCE/data_proc/download_proc_czi_cxg.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,214 copying build/lib/omicverse/llm/UCE/data_proc/preproc_many_dataset.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE/data_proc 2026-04-05T04:04:24,216 copying build/lib/omicverse/llm/UCE/evaluate.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,219 copying build/lib/omicverse/llm/UCE/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,221 copying build/lib/omicverse/llm/UCE/eval_single_anndata.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,223 copying build/lib/omicverse/llm/UCE/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/UCE 2026-04-05T04:04:24,225 copying build/lib/omicverse/llm/uce_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,229 creating build/bdist.linux-armv7l/wheel/omicverse/llm/utils 2026-04-05T04:04:24,230 copying build/lib/omicverse/llm/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-05T04:04:24,232 copying build/lib/omicverse/llm/utils/output_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-05T04:04:24,235 copying build/lib/omicverse/llm/utils/message_standards.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/utils 2026-04-05T04:04:24,237 copying build/lib/omicverse/llm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,239 copying build/lib/omicverse/llm/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,242 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation 2026-04-05T04:04:24,243 copying build/lib/omicverse/llm/scfoundation/check_consistency.ipynb -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,246 copying build/lib/omicverse/llm/scfoundation/OS_scRNA_gene_index.19264.tsv -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,253 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,254 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,256 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,258 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/reversible.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,261 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,262 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/mae_autobin.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,264 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/select_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,266 copying build/lib/omicverse/llm/scfoundation/pretrainmodels/pytorchTransformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/pretrainmodels 2026-04-05T04:04:24,268 copying build/lib/omicverse/llm/scfoundation/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,270 copying build/lib/omicverse/llm/scfoundation/load.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,272 copying build/lib/omicverse/llm/scfoundation/get_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,274 copying build/lib/omicverse/llm/scfoundation/finetune_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,276 copying build/lib/omicverse/llm/scfoundation/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,278 copying build/lib/omicverse/llm/scfoundation/training_hyperparameter.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation 2026-04-05T04:04:24,281 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scfoundation/models 2026-04-05T04:04:24,282 copying build/lib/omicverse/llm/scfoundation/models/download.txt -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scfoundation/models 2026-04-05T04:04:24,284 copying build/lib/omicverse/llm/model_download.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,287 copying build/lib/omicverse/llm/model_factory.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,291 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research 2026-04-05T04:04:24,292 copying build/lib/omicverse/llm/domain_research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research 2026-04-05T04:04:24,294 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/write 2026-04-05T04:04:24,295 copying build/lib/omicverse/llm/domain_research/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/write 2026-04-05T04:04:24,298 creating build/bdist.linux-armv7l/wheel/omicverse/llm/domain_research/retrievers 2026-04-05T04:04:24,299 copying build/lib/omicverse/llm/domain_research/retrievers/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/domain_research/retrievers 2026-04-05T04:04:24,301 copying build/lib/omicverse/llm/cellplm_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,304 copying build/lib/omicverse/llm/resource_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,307 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer 2026-04-05T04:04:24,309 creating build/bdist.linux-armv7l/wheel/omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,310 copying build/lib/omicverse/llm/geneformer/mtl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,312 copying build/lib/omicverse/llm/geneformer/mtl/collators.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,314 copying build/lib/omicverse/llm/geneformer/mtl/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,316 copying build/lib/omicverse/llm/geneformer/mtl/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,318 copying build/lib/omicverse/llm/geneformer/mtl/eval_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,320 copying build/lib/omicverse/llm/geneformer/mtl/train.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,323 copying build/lib/omicverse/llm/geneformer/mtl/utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer/mtl 2026-04-05T04:04:24,326 copying build/lib/omicverse/llm/geneformer/evaluation_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,328 copying build/lib/omicverse/llm/geneformer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,330 copying build/lib/omicverse/llm/geneformer/pretrainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,333 copying build/lib/omicverse/llm/geneformer/classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,336 copying build/lib/omicverse/llm/geneformer/perturber_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,338 copying build/lib/omicverse/llm/geneformer/tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,341 copying build/lib/omicverse/llm/geneformer/in_silico_perturber_stats.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,344 copying build/lib/omicverse/llm/geneformer/emb_extractor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,347 copying build/lib/omicverse/llm/geneformer/mtl_classifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,349 copying build/lib/omicverse/llm/geneformer/in_silico_perturber.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,353 copying build/lib/omicverse/llm/geneformer/collator_for_classification.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,356 copying build/lib/omicverse/llm/geneformer/classifier_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/geneformer 2026-04-05T04:04:24,359 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr 2026-04-05T04:04:24,360 copying build/lib/omicverse/llm/dr/research_manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,362 copying build/lib/omicverse/llm/dr/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,364 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/verify 2026-04-05T04:04:24,366 copying build/lib/omicverse/llm/dr/verify/quality.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/verify 2026-04-05T04:04:24,368 copying build/lib/omicverse/llm/dr/cache.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,370 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/write 2026-04-05T04:04:24,371 copying build/lib/omicverse/llm/dr/write/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-05T04:04:24,373 copying build/lib/omicverse/llm/dr/write/synthesizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-05T04:04:24,375 copying build/lib/omicverse/llm/dr/write/report.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/write 2026-04-05T04:04:24,378 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/scope 2026-04-05T04:04:24,379 copying build/lib/omicverse/llm/dr/scope/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-05T04:04:24,381 copying build/lib/omicverse/llm/dr/scope/brief.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-05T04:04:24,383 copying build/lib/omicverse/llm/dr/scope/llm_scoper.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-05T04:04:24,385 copying build/lib/omicverse/llm/dr/scope/manager.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-05T04:04:24,387 copying build/lib/omicverse/llm/dr/scope/clarifier.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/scope 2026-04-05T04:04:24,389 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/research 2026-04-05T04:04:24,390 copying build/lib/omicverse/llm/dr/research/agent.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-05T04:04:24,392 copying build/lib/omicverse/llm/dr/research/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-05T04:04:24,394 copying build/lib/omicverse/llm/dr/research/supervisor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/research 2026-04-05T04:04:24,397 creating build/bdist.linux-armv7l/wheel/omicverse/llm/dr/retrievers 2026-04-05T04:04:24,397 copying build/lib/omicverse/llm/dr/retrievers/web_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-04-05T04:04:24,400 copying build/lib/omicverse/llm/dr/retrievers/embed_web.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr/retrievers 2026-04-05T04:04:24,402 copying build/lib/omicverse/llm/dr/vector_store.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,404 copying build/lib/omicverse/llm/dr/prompts.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,406 copying build/lib/omicverse/llm/dr/validation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/dr 2026-04-05T04:04:24,408 copying build/lib/omicverse/llm/scfoundation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,411 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt 2026-04-05T04:04:24,413 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:24,414 copying build/lib/omicverse/llm/scgpt/tokenizer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:24,416 copying build/lib/omicverse/llm/scgpt/tokenizer/default_gene_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:24,448 copying build/lib/omicverse/llm/scgpt/tokenizer/default_census_vocab.json -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:24,474 copying build/lib/omicverse/llm/scgpt/tokenizer/gene_tokenizer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tokenizer 2026-04-05T04:04:24,477 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,478 copying build/lib/omicverse/llm/scgpt/scbank/databank.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,481 copying build/lib/omicverse/llm/scgpt/scbank/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,482 copying build/lib/omicverse/llm/scgpt/scbank/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,484 copying build/lib/omicverse/llm/scgpt/scbank/setting.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,486 copying build/lib/omicverse/llm/scgpt/scbank/monitor.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/scbank 2026-04-05T04:04:24,488 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/utils 2026-04-05T04:04:24,489 copying build/lib/omicverse/llm/scgpt/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-04-05T04:04:24,492 copying build/lib/omicverse/llm/scgpt/utils/util.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/utils 2026-04-05T04:04:24,495 copying build/lib/omicverse/llm/scgpt/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,498 copying build/lib/omicverse/llm/scgpt/data_sampler.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,501 copying build/lib/omicverse/llm/scgpt/data_collator.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,506 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/model 2026-04-05T04:04:24,508 copying build/lib/omicverse/llm/scgpt/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,512 copying build/lib/omicverse/llm/scgpt/model/grad_reverse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,516 copying build/lib/omicverse/llm/scgpt/model/multiomic_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,521 copying build/lib/omicverse/llm/scgpt/model/dsbn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,525 copying build/lib/omicverse/llm/scgpt/model/model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,530 copying build/lib/omicverse/llm/scgpt/model/generation_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/model 2026-04-05T04:04:24,534 copying build/lib/omicverse/llm/scgpt/trainer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,540 creating build/bdist.linux-armv7l/wheel/omicverse/llm/scgpt/tasks 2026-04-05T04:04:24,542 copying build/lib/omicverse/llm/scgpt/tasks/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-05T04:04:24,546 copying build/lib/omicverse/llm/scgpt/tasks/cell_emb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-05T04:04:24,550 copying build/lib/omicverse/llm/scgpt/tasks/grn.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt/tasks 2026-04-05T04:04:24,554 copying build/lib/omicverse/llm/scgpt/preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,559 copying build/lib/omicverse/llm/scgpt/loss.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/scgpt 2026-04-05T04:04:24,562 copying build/lib/omicverse/llm/scgpt_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,575 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM 2026-04-05T04:04:24,582 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/decoder 2026-04-05T04:04:24,586 copying build/lib/omicverse/llm/CellPLM/decoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-05T04:04:24,593 copying build/lib/omicverse/llm/CellPLM/decoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-05T04:04:24,595 copying build/lib/omicverse/llm/CellPLM/decoder/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/decoder 2026-04-05T04:04:24,599 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/objective 2026-04-05T04:04:24,600 copying build/lib/omicverse/llm/CellPLM/objective/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-05T04:04:24,602 copying build/lib/omicverse/llm/CellPLM/objective/autoencoder.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-05T04:04:24,605 copying build/lib/omicverse/llm/CellPLM/objective/zinb.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/objective 2026-04-05T04:04:24,608 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,610 copying build/lib/omicverse/llm/CellPLM/utils/eval.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,612 copying build/lib/omicverse/llm/CellPLM/utils/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,615 copying build/lib/omicverse/llm/CellPLM/utils/sparse.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,617 copying build/lib/omicverse/llm/CellPLM/utils/data.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,621 copying build/lib/omicverse/llm/CellPLM/utils/mask.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,624 copying build/lib/omicverse/llm/CellPLM/utils/pe.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/utils 2026-04-05T04:04:24,627 copying build/lib/omicverse/llm/CellPLM/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM 2026-04-05T04:04:24,629 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/encoder 2026-04-05T04:04:24,631 copying build/lib/omicverse/llm/CellPLM/encoder/mlp.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-05T04:04:24,634 copying build/lib/omicverse/llm/CellPLM/encoder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-05T04:04:24,636 copying build/lib/omicverse/llm/CellPLM/encoder/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/encoder 2026-04-05T04:04:24,639 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,640 copying build/lib/omicverse/llm/CellPLM/layer/performer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,643 copying build/lib/omicverse/llm/CellPLM/layer/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,646 copying build/lib/omicverse/llm/CellPLM/layer/cosformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,648 copying build/lib/omicverse/llm/CellPLM/layer/transformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,651 copying build/lib/omicverse/llm/CellPLM/layer/flowformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/layer 2026-04-05T04:04:24,655 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/head 2026-04-05T04:04:24,656 copying build/lib/omicverse/llm/CellPLM/head/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-04-05T04:04:24,658 copying build/lib/omicverse/llm/CellPLM/head/downstream.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/head 2026-04-05T04:04:24,662 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/latent 2026-04-05T04:04:24,663 copying build/lib/omicverse/llm/CellPLM/latent/contrastive.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-05T04:04:24,666 copying build/lib/omicverse/llm/CellPLM/latent/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-05T04:04:24,668 copying build/lib/omicverse/llm/CellPLM/latent/adversarial.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-05T04:04:24,671 copying build/lib/omicverse/llm/CellPLM/latent/autoencoders.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/latent 2026-04-05T04:04:24,674 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/model 2026-04-05T04:04:24,675 copying build/lib/omicverse/llm/CellPLM/model/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-04-05T04:04:24,678 copying build/lib/omicverse/llm/CellPLM/model/cellformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/model 2026-04-05T04:04:24,681 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/embedder 2026-04-05T04:04:24,682 copying build/lib/omicverse/llm/CellPLM/embedder/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-04-05T04:04:24,685 copying build/lib/omicverse/llm/CellPLM/embedder/omics.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/embedder 2026-04-05T04:04:24,688 creating build/bdist.linux-armv7l/wheel/omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,689 copying build/lib/omicverse/llm/CellPLM/pipeline/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,692 copying build/lib/omicverse/llm/CellPLM/pipeline/experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,694 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,697 copying build/lib/omicverse/llm/CellPLM/pipeline/imputation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,700 copying build/lib/omicverse/llm/CellPLM/pipeline/cell_type_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm/CellPLM/pipeline 2026-04-05T04:04:24,703 copying build/lib/omicverse/llm/geneformer_model.py -> build/bdist.linux-armv7l/wheel/./omicverse/llm 2026-04-05T04:04:24,709 creating build/bdist.linux-armv7l/wheel/omicverse/single 2026-04-05T04:04:24,710 copying build/lib/omicverse/single/_multimap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,714 copying build/lib/omicverse/single/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,717 copying build/lib/omicverse/single/_lazy_report.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,719 copying build/lib/omicverse/single/_tosica.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,722 copying build/lib/omicverse/single/_metacell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,724 copying build/lib/omicverse/single/_cellfategenie.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,727 copying build/lib/omicverse/single/_deg_ct.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,730 copying build/lib/omicverse/single/_nocd.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,732 copying build/lib/omicverse/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,735 copying build/lib/omicverse/single/_annotation.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,738 copying build/lib/omicverse/single/_annotation_ref.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,740 copying build/lib/omicverse/single/_cellmatch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,746 copying build/lib/omicverse/single/_scgsea.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,749 copying build/lib/omicverse/single/_cefcon.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,751 copying build/lib/omicverse/single/_aucell.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,754 copying build/lib/omicverse/single/_simba.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,756 copying build/lib/omicverse/single/_ltnn.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,759 copying build/lib/omicverse/single/_cnmf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,761 copying build/lib/omicverse/single/_mdic3.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,763 copying build/lib/omicverse/single/_cellvote.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,766 copying build/lib/omicverse/single/_lazy_function.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,768 copying build/lib/omicverse/single/_velo.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,771 copying build/lib/omicverse/single/_mofa.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,779 copying build/lib/omicverse/single/_milo_dev.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,782 copying build/lib/omicverse/single/_anno.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,785 copying build/lib/omicverse/single/_via.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,789 copying build/lib/omicverse/single/_markers.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,792 copying build/lib/omicverse/single/_batch.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,795 copying build/lib/omicverse/single/_lazy_checkpoint.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,797 copying build/lib/omicverse/single/_lazy_step_by_step.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,800 copying build/lib/omicverse/single/_SCSA.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,805 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates 2026-04-05T04:04:24,806 copying build/lib/omicverse/single/templates/analytics_example.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,809 copying build/lib/omicverse/single/templates/report_template.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,812 copying build/lib/omicverse/single/templates/sections.html -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,814 copying build/lib/omicverse/single/templates/styles.css -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,817 creating build/bdist.linux-armv7l/wheel/omicverse/single/templates/img 2026-04-05T04:04:24,818 copying build/lib/omicverse/single/templates/img/sun-yet-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-05T04:04:24,822 copying build/lib/omicverse/single/templates/img/placeholder_logo.md -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-05T04:04:24,824 copying build/lib/omicverse/single/templates/img/ustb-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-05T04:04:24,827 copying build/lib/omicverse/single/templates/img/stanford-logo.png -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates/img 2026-04-05T04:04:24,830 copying build/lib/omicverse/single/templates/script.js -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,832 copying build/lib/omicverse/single/templates/analytics_config.py -> build/bdist.linux-armv7l/wheel/./omicverse/single/templates 2026-04-05T04:04:24,835 copying build/lib/omicverse/single/_pyslingshot.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,838 copying build/lib/omicverse/single/_cytotrace2.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,840 copying build/lib/omicverse/single/_diffusionmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,843 copying build/lib/omicverse/single/_traj.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,846 copying build/lib/omicverse/single/_gptcelltype.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,848 copying build/lib/omicverse/single/_atac.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,850 copying build/lib/omicverse/single/_scenic.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,853 copying build/lib/omicverse/single/_gptcelltype_local.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,855 copying build/lib/omicverse/single/README.md -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,858 copying build/lib/omicverse/single/_sccaf.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,861 copying build/lib/omicverse/single/_cosg.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,863 copying build/lib/omicverse/single/_scannorl.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,866 copying build/lib/omicverse/single/_scdrug.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,868 copying build/lib/omicverse/single/_scdiffusion.py -> build/bdist.linux-armv7l/wheel/./omicverse/single 2026-04-05T04:04:24,871 copying build/lib/omicverse/claw.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:24,874 creating build/bdist.linux-armv7l/wheel/omicverse/alignment 2026-04-05T04:04:24,875 copying build/lib/omicverse/alignment/pipeline.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,877 copying build/lib/omicverse/alignment/prefetch.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,880 copying build/lib/omicverse/alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,881 copying build/lib/omicverse/alignment/_cli_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,884 copying build/lib/omicverse/alignment/fq_dump.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,886 copying build/lib/omicverse/alignment/featureCount.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,888 copying build/lib/omicverse/alignment/fastp.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,890 copying build/lib/omicverse/alignment/STAR.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,892 copying build/lib/omicverse/alignment/kb_api.py -> build/bdist.linux-armv7l/wheel/./omicverse/alignment 2026-04-05T04:04:24,895 creating build/bdist.linux-armv7l/wheel/omicverse/io 2026-04-05T04:04:24,896 copying build/lib/omicverse/io/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io 2026-04-05T04:04:24,899 creating build/bdist.linux-armv7l/wheel/omicverse/io/single 2026-04-05T04:04:24,900 copying build/lib/omicverse/io/single/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-05T04:04:24,901 copying build/lib/omicverse/io/single/_rust.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-05T04:04:24,904 copying build/lib/omicverse/io/single/_read.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-05T04:04:24,906 copying build/lib/omicverse/io/single/_formats.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/single 2026-04-05T04:04:24,909 creating build/bdist.linux-armv7l/wheel/omicverse/io/general 2026-04-05T04:04:24,910 copying build/lib/omicverse/io/general/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-05T04:04:24,911 copying build/lib/omicverse/io/general/_serialization.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-05T04:04:24,913 copying build/lib/omicverse/io/general/_tabular.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/general 2026-04-05T04:04:24,915 creating build/bdist.linux-armv7l/wheel/omicverse/io/spatial 2026-04-05T04:04:24,916 copying build/lib/omicverse/io/spatial/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-05T04:04:24,919 copying build/lib/omicverse/io/spatial/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-05T04:04:24,921 copying build/lib/omicverse/io/spatial/_visium_hd.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-05T04:04:24,923 copying build/lib/omicverse/io/spatial/_visium.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/spatial 2026-04-05T04:04:24,926 creating build/bdist.linux-armv7l/wheel/omicverse/io/bulk 2026-04-05T04:04:24,927 copying build/lib/omicverse/io/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/io/bulk 2026-04-05T04:04:24,929 copying build/lib/omicverse/_settings.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:24,933 creating build/bdist.linux-armv7l/wheel/omicverse/pl 2026-04-05T04:04:24,934 copying build/lib/omicverse/pl/_cpdb.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,937 copying build/lib/omicverse/pl/_cpdbviz_plus.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,943 copying build/lib/omicverse/pl/_nanostring.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,946 copying build/lib/omicverse/pl/_space.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,949 copying build/lib/omicverse/pl/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,952 copying build/lib/omicverse/pl/_flowsig.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,954 copying build/lib/omicverse/pl/_venn_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,956 copying build/lib/omicverse/pl/_multi.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,958 copying build/lib/omicverse/pl/_dotplot.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,961 copying build/lib/omicverse/pl/_cpdbviz.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,966 copying build/lib/omicverse/pl/_plot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,969 copying build/lib/omicverse/pl/_violin.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,972 copying build/lib/omicverse/pl/_spatialseg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,974 copying build/lib/omicverse/pl/_spatial.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,978 copying build/lib/omicverse/pl/_single.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,981 copying build/lib/omicverse/pl/_general.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,982 copying build/lib/omicverse/pl/_density.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,985 copying build/lib/omicverse/pl/_scanpy_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,987 copying build/lib/omicverse/pl/_heatmap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,989 copying build/lib/omicverse/pl/_ccc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,994 copying build/lib/omicverse/pl/_palette.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:24,997 copying build/lib/omicverse/pl/_embedding.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,000 copying build/lib/omicverse/pl/_bulk.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,002 copying build/lib/omicverse/pl/_animation_lines.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,005 copying build/lib/omicverse/pl/_forbidden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,008 copying build/lib/omicverse/pl/_scatterplot_backend.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,011 copying build/lib/omicverse/pl/_heatmap_marsilea.py -> build/bdist.linux-armv7l/wheel/./omicverse/pl 2026-04-05T04:04:25,015 creating build/bdist.linux-armv7l/wheel/omicverse/pp 2026-04-05T04:04:25,016 copying build/lib/omicverse/pp/pyg_knn_implementation.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,019 creating build/bdist.linux-armv7l/wheel/omicverse/pp/experimental 2026-04-05T04:04:25,020 copying build/lib/omicverse/pp/experimental/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-05T04:04:25,022 copying build/lib/omicverse/pp/experimental/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-05T04:04:25,024 copying build/lib/omicverse/pp/experimental/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/experimental 2026-04-05T04:04:25,027 copying build/lib/omicverse/pp/_qc.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,031 copying build/lib/omicverse/pp/_utils.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,033 copying build/lib/omicverse/pp/_compat.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,035 copying build/lib/omicverse/pp/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,037 copying build/lib/omicverse/pp/_tsne.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,040 creating build/bdist.linux-armv7l/wheel/omicverse/pp/_scrublet_backend 2026-04-05T04:04:25,041 copying build/lib/omicverse/pp/_scrublet_backend/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-05T04:04:25,043 copying build/lib/omicverse/pp/_scrublet_backend/scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-05T04:04:25,046 copying build/lib/omicverse/pp/_scrublet_backend/helper_functions.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp/_scrublet_backend 2026-04-05T04:04:25,048 copying build/lib/omicverse/pp/_leiden_pyg.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,051 copying build/lib/omicverse/pp/_sccomposite.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,053 copying build/lib/omicverse/pp/_highly_variable_genes.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,056 copying build/lib/omicverse/pp/_connectivity.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,058 copying build/lib/omicverse/pp/_recover.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,060 copying build/lib/omicverse/pp/_scale.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,063 copying build/lib/omicverse/pp/_preprocess.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,067 copying build/lib/omicverse/pp/_normalization.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,069 copying build/lib/omicverse/pp/_leiden_test.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,072 copying build/lib/omicverse/pp/_pca.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,075 copying build/lib/omicverse/pp/_leiden.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,077 copying build/lib/omicverse/pp/_umap.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,080 copying build/lib/omicverse/pp/_pca_mlx.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,083 copying build/lib/omicverse/pp/_sude.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,085 copying build/lib/omicverse/pp/_distributed.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,087 copying build/lib/omicverse/pp/_scrublet.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,089 copying build/lib/omicverse/pp/_neighbors.py -> build/bdist.linux-armv7l/wheel/./omicverse/pp 2026-04-05T04:04:25,093 creating build/bdist.linux-armv7l/wheel/omicverse/bulk 2026-04-05T04:04:25,094 copying build/lib/omicverse/bulk/_Deseq2.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,096 copying build/lib/omicverse/bulk/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,098 copying build/lib/omicverse/bulk/_df_apply.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,100 creating build/bdist.linux-armv7l/wheel/omicverse/bulk/_alignment 2026-04-05T04:04:25,101 copying build/lib/omicverse/bulk/_alignment/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk/_alignment 2026-04-05T04:04:25,103 copying build/lib/omicverse/bulk/_network.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,105 copying build/lib/omicverse/bulk/_decov.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,108 copying build/lib/omicverse/bulk/_combat.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,110 copying build/lib/omicverse/bulk/_Gene_module.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,112 copying build/lib/omicverse/bulk/_Enrichment.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,115 copying build/lib/omicverse/bulk/_dynamicTree.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,118 copying build/lib/omicverse/bulk/_tcga.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,123 copying build/lib/omicverse/bulk/_chm13.py -> build/bdist.linux-armv7l/wheel/./omicverse/bulk 2026-04-05T04:04:25,150 creating build/bdist.linux-armv7l/wheel/omicverse/fm 2026-04-05T04:04:25,151 copying build/lib/omicverse/fm/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-05T04:04:25,153 copying build/lib/omicverse/fm/registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-05T04:04:25,156 copying build/lib/omicverse/fm/api.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-05T04:04:25,159 creating build/bdist.linux-armv7l/wheel/omicverse/fm/adapters 2026-04-05T04:04:25,160 copying build/lib/omicverse/fm/adapters/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,162 copying build/lib/omicverse/fm/adapters/base.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,164 copying build/lib/omicverse/fm/adapters/_experimental.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,167 copying build/lib/omicverse/fm/adapters/_scgpt.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,168 copying build/lib/omicverse/fm/adapters/_cellplm.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,170 copying build/lib/omicverse/fm/adapters/_uce.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,172 copying build/lib/omicverse/fm/adapters/_scfoundation.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,174 copying build/lib/omicverse/fm/adapters/_geneformer.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm/adapters 2026-04-05T04:04:25,176 copying build/lib/omicverse/fm/_conda_runner.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-05T04:04:25,178 copying build/lib/omicverse/fm/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/fm 2026-04-05T04:04:25,180 copying build/lib/omicverse/_lazy_loader.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:25,183 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis 2026-04-05T04:04:25,184 copying build/lib/omicverse/jarvis/agent_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,187 copying build/lib/omicverse/jarvis/openai_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,189 copying build/lib/omicverse/jarvis/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,191 copying build/lib/omicverse/jarvis/model_help.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,193 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/runtime 2026-04-05T04:04:25,194 copying build/lib/omicverse/jarvis/runtime/runtime.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,196 copying build/lib/omicverse/jarvis/runtime/policy.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,198 copying build/lib/omicverse/jarvis/runtime/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,200 copying build/lib/omicverse/jarvis/runtime/execution_adapter.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,202 copying build/lib/omicverse/jarvis/runtime/models.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,204 copying build/lib/omicverse/jarvis/runtime/task_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,206 copying build/lib/omicverse/jarvis/runtime/router.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/runtime 2026-04-05T04:04:25,208 copying build/lib/omicverse/jarvis/config.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,209 copying build/lib/omicverse/jarvis/USAGE.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,212 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/memory 2026-04-05T04:04:25,213 copying build/lib/omicverse/jarvis/memory/store.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-04-05T04:04:25,215 copying build/lib/omicverse/jarvis/memory/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/memory 2026-04-05T04:04:25,218 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/channels 2026-04-05T04:04:25,219 copying build/lib/omicverse/jarvis/channels/channel_core.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,222 copying build/lib/omicverse/jarvis/channels/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,224 copying build/lib/omicverse/jarvis/channels/telegram.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,229 copying build/lib/omicverse/jarvis/channels/wechat.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,233 copying build/lib/omicverse/jarvis/channels/qq.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,237 copying build/lib/omicverse/jarvis/channels/imessage.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,240 copying build/lib/omicverse/jarvis/channels/discord.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,242 copying build/lib/omicverse/jarvis/channels/feishu.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/channels 2026-04-05T04:04:25,245 copying build/lib/omicverse/jarvis/model_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,247 copying build/lib/omicverse/jarvis/session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,250 copying build/lib/omicverse/jarvis/USAGE.zh.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,252 copying build/lib/omicverse/jarvis/_bridge_session.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,255 creating build/bdist.linux-armv7l/wheel/omicverse/jarvis/gateway 2026-04-05T04:04:25,256 copying build/lib/omicverse/jarvis/gateway/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-05T04:04:25,257 copying build/lib/omicverse/jarvis/gateway/web_bridge.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-05T04:04:25,260 copying build/lib/omicverse/jarvis/gateway/routing.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis/gateway 2026-04-05T04:04:25,262 copying build/lib/omicverse/jarvis/_fmt.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,264 copying build/lib/omicverse/jarvis/agent_bridge_readme.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,267 copying build/lib/omicverse/jarvis/gemini_cli_oauth.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,270 copying build/lib/omicverse/jarvis/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,273 copying build/lib/omicverse/jarvis/media_ingest.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,276 copying build/lib/omicverse/jarvis/setup_wizard.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,279 copying build/lib/omicverse/jarvis/USAGE.en.md -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,281 copying build/lib/omicverse/jarvis/channel_media.py -> build/bdist.linux-armv7l/wheel/./omicverse/jarvis 2026-04-05T04:04:25,284 creating build/bdist.linux-armv7l/wheel/omicverse/space 2026-04-05T04:04:25,285 copying build/lib/omicverse/space/_spatrio.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,288 copying build/lib/omicverse/space/_spaceflow.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,290 copying build/lib/omicverse/space/__init__.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,292 copying build/lib/omicverse/space/_stt.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,295 copying build/lib/omicverse/space/_cast.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,297 copying build/lib/omicverse/space/_tangram.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,299 copying build/lib/omicverse/space/_cluster.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,302 copying build/lib/omicverse/space/_starfysh.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,304 copying build/lib/omicverse/space/_svg.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,306 copying build/lib/omicverse/space/_deconvolution.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,309 copying build/lib/omicverse/space/_integrate.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,312 copying build/lib/omicverse/space/_tools.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,315 copying build/lib/omicverse/space/_gaston.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,317 copying build/lib/omicverse/space/_commot.py -> build/bdist.linux-armv7l/wheel/./omicverse/space 2026-04-05T04:04:25,320 copying build/lib/omicverse/_optional.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:25,322 copying build/lib/omicverse/cli.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:25,324 copying build/lib/omicverse/_registry.py -> build/bdist.linux-armv7l/wheel/./omicverse 2026-04-05T04:04:25,327 running install_egg_info 2026-04-05T04:04:25,332 Copying omicverse.egg-info to build/bdist.linux-armv7l/wheel/./omicverse-2.1.1-py3.11.egg-info 2026-04-05T04:04:25,347 running install_scripts 2026-04-05T04:04:25,361 creating build/bdist.linux-armv7l/wheel/omicverse-2.1.1.dist-info/WHEEL 2026-04-05T04:04:25,364 creating '/tmp/pip-wheel-uldtzc6f/.tmp-emcn5a3q/omicverse-2.1.1-py3-none-any.whl' and adding 'build/bdist.linux-armv7l/wheel' to it 2026-04-05T04:04:25,367 adding 'omicverse/__init__.py' 2026-04-05T04:04:25,369 adding 'omicverse/_lazy_loader.py' 2026-04-05T04:04:25,371 adding 'omicverse/_monitor.py' 2026-04-05T04:04:25,372 adding 'omicverse/_optional.py' 2026-04-05T04:04:25,378 adding 'omicverse/_registry.py' 2026-04-05T04:04:25,384 adding 'omicverse/_settings.py' 2026-04-05T04:04:25,387 adding 'omicverse/claw.py' 2026-04-05T04:04:25,388 adding 'omicverse/cli.py' 2026-04-05T04:04:25,390 adding 'omicverse/agent/__init__.py' 2026-04-05T04:04:25,393 adding 'omicverse/alignment/STAR.py' 2026-04-05T04:04:25,395 adding 'omicverse/alignment/__init__.py' 2026-04-05T04:04:25,397 adding 'omicverse/alignment/_cli_utils.py' 2026-04-05T04:04:25,398 adding 'omicverse/alignment/fastp.py' 2026-04-05T04:04:25,400 adding 'omicverse/alignment/featureCount.py' 2026-04-05T04:04:25,402 adding 'omicverse/alignment/fq_dump.py' 2026-04-05T04:04:25,406 adding 'omicverse/alignment/kb_api.py' 2026-04-05T04:04:25,408 adding 'omicverse/alignment/pipeline.py' 2026-04-05T04:04:25,410 adding 'omicverse/alignment/prefetch.py' 2026-04-05T04:04:25,417 adding 'omicverse/bulk/_Deseq2.py' 2026-04-05T04:04:25,423 adding 'omicverse/bulk/_Enrichment.py' 2026-04-05T04:04:25,428 adding 'omicverse/bulk/_Gene_module.py' 2026-04-05T04:04:25,430 adding 'omicverse/bulk/__init__.py' 2026-04-05T04:04:25,498 adding 'omicverse/bulk/_chm13.py' 2026-04-05T04:04:25,507 adding 'omicverse/bulk/_combat.py' 2026-04-05T04:04:25,509 adding 'omicverse/bulk/_decov.py' 2026-04-05T04:04:25,511 adding 'omicverse/bulk/_df_apply.py' 2026-04-05T04:04:25,516 adding 'omicverse/bulk/_dynamicTree.py' 2026-04-05T04:04:25,518 adding 'omicverse/bulk/_network.py' 2026-04-05T04:04:25,520 adding 'omicverse/bulk/_tcga.py' 2026-04-05T04:04:25,521 adding 'omicverse/bulk/_alignment/__init__.py' 2026-04-05T04:04:25,523 adding 'omicverse/bulk2single/__init__.py' 2026-04-05T04:04:25,527 adding 'omicverse/bulk2single/_bulk2single.py' 2026-04-05T04:04:25,528 adding 'omicverse/bulk2single/_bulkdeconvolve.py' 2026-04-05T04:04:25,531 adding 'omicverse/bulk2single/_bulktrajblend.py' 2026-04-05T04:04:25,536 adding 'omicverse/bulk2single/_map_utils.py' 2026-04-05T04:04:25,540 adding 'omicverse/bulk2single/_map_utils1.py' 2026-04-05T04:04:25,542 adding 'omicverse/bulk2single/_scsemi.py' 2026-04-05T04:04:25,545 adding 'omicverse/bulk2single/_single2spatial.py' 2026-04-05T04:04:25,547 adding 'omicverse/bulk2single/_utils.py' 2026-04-05T04:04:25,549 adding 'omicverse/bulk2single/_vae.py' 2026-04-05T04:04:25,551 adding 'omicverse/datasets/__init__.py' 2026-04-05T04:04:25,557 adding 'omicverse/datasets/_datasets.py' 2026-04-05T04:04:25,558 adding 'omicverse/datasets/_signatures.py' 2026-04-05T04:04:25,560 adding 'omicverse/datasets/data_files/README.md' 2026-04-05T04:04:25,600 adding 'omicverse/datasets/data_files/features_model_training_17.csv' 2026-04-05T04:04:25,602 adding 'omicverse/datasets/data_files/human_alias_list.txt' 2026-04-05T04:04:26,119 adding 'omicverse/datasets/data_files/mart_export.txt' 2026-04-05T04:04:26,151 adding 'omicverse/datasets/data_files/smoothDatakNN.py' 2026-04-05T04:04:26,154 adding 'omicverse/datasets/data_files/TF/allTFs_human.txt' 2026-04-05T04:04:26,156 adding 'omicverse/datasets/data_files/TF/allTFs_mouse.txt' 2026-04-05T04:04:26,184 adding 'omicverse/datasets/data_files/TF/allTFs_zebrafish.txt' 2026-04-05T04:04:26,226 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_human.csv' 2026-04-05T04:04:26,266 adding 'omicverse/datasets/data_files/TF/cellchat_interactions_and_tfs_mouse.csv' 2026-04-05T04:04:26,273 adding 'omicverse/external/__init__.py' 2026-04-05T04:04:26,275 adding 'omicverse/external/BINARY/Model.py' 2026-04-05T04:04:26,277 adding 'omicverse/external/BINARY/Train_BINARY.py' 2026-04-05T04:04:26,278 adding 'omicverse/external/BINARY/__init__.py' 2026-04-05T04:04:26,281 adding 'omicverse/external/BINARY/utils.py' 2026-04-05T04:04:26,283 adding 'omicverse/external/CAST/CAST_Mark.py' 2026-04-05T04:04:26,285 adding 'omicverse/external/CAST/CAST_Projection.py' 2026-04-05T04:04:26,289 adding 'omicverse/external/CAST/CAST_Stack.py' 2026-04-05T04:04:26,291 adding 'omicverse/external/CAST/__init__.py' 2026-04-05T04:04:26,293 adding 'omicverse/external/CAST/main.py' 2026-04-05T04:04:26,296 adding 'omicverse/external/CAST/utils.py' 2026-04-05T04:04:26,298 adding 'omicverse/external/CAST/visualize.py' 2026-04-05T04:04:26,299 adding 'omicverse/external/CAST/model/__init__.py' 2026-04-05T04:04:26,301 adding 'omicverse/external/CAST/model/aug.py' 2026-04-05T04:04:26,302 adding 'omicverse/external/CAST/model/model_GCNII.py' 2026-04-05T04:04:26,304 adding 'omicverse/external/CEFCON/CEFCON.py' 2026-04-05T04:04:26,305 adding 'omicverse/external/CEFCON/__init__.py' 2026-04-05T04:04:26,307 adding 'omicverse/external/CEFCON/_aucell.py' 2026-04-05T04:04:26,310 adding 'omicverse/external/CEFCON/cefcon_result_object.py' 2026-04-05T04:04:26,313 adding 'omicverse/external/CEFCON/cell_lineage_GRN.py' 2026-04-05T04:04:26,315 adding 'omicverse/external/CEFCON/datasets.py' 2026-04-05T04:04:26,317 adding 'omicverse/external/CEFCON/driver_regulators.py' 2026-04-05T04:04:26,319 adding 'omicverse/external/CEFCON/eval_utils.py' 2026-04-05T04:04:26,322 adding 'omicverse/external/CEFCON/utils.py' 2026-04-05T04:04:26,324 adding 'omicverse/external/CEFCON/resources/__init__.py' 2026-04-05T04:04:26,326 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_animaltfdb4.txt' 2026-04-05T04:04:26,329 adding 'omicverse/external/CEFCON/resources/hs_hgnc_tfs_lambert2018.txt' 2026-04-05T04:04:26,331 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs.txt' 2026-04-05T04:04:26,334 adding 'omicverse/external/CEFCON/resources/mm_mgi_tfs_animaltfdb4.txt' 2026-04-05T04:04:26,336 adding 'omicverse/external/GNTD/_GNTD.py' 2026-04-05T04:04:26,337 adding 'omicverse/external/GNTD/_NTD.py' 2026-04-05T04:04:26,339 adding 'omicverse/external/GNTD/_preprocessing.py' 2026-04-05T04:04:26,341 adding 'omicverse/external/GNTD/_utils.py' 2026-04-05T04:04:26,344 adding 'omicverse/external/GraphST/GraphST.py' 2026-04-05T04:04:26,345 adding 'omicverse/external/GraphST/__init__.py' 2026-04-05T04:04:26,347 adding 'omicverse/external/GraphST/model.py' 2026-04-05T04:04:26,348 adding 'omicverse/external/GraphST/preprocess.py' 2026-04-05T04:04:26,349 adding 'omicverse/external/GraphST/readme.txt' 2026-04-05T04:04:26,351 adding 'omicverse/external/GraphST/utils.py' 2026-04-05T04:04:26,353 adding 'omicverse/external/NaiveDE/__init__.py' 2026-04-05T04:04:26,354 adding 'omicverse/external/NaiveDE/base.py' 2026-04-05T04:04:26,355 adding 'omicverse/external/NaiveDE/cell_types.py' 2026-04-05T04:04:26,357 adding 'omicverse/external/NaiveDE/faux_fold_change.py' 2026-04-05T04:04:26,358 adding 'omicverse/external/NaiveDE/impulse.py' 2026-04-05T04:04:26,359 adding 'omicverse/external/NaiveDE/loom.py' 2026-04-05T04:04:26,360 adding 'omicverse/external/NaiveDE/simulate.py' 2026-04-05T04:04:26,362 adding 'omicverse/external/PROST/PROST.py' 2026-04-05T04:04:26,364 adding 'omicverse/external/PROST/__init__.py' 2026-04-05T04:04:26,366 adding 'omicverse/external/PROST/calculate_PI.py' 2026-04-05T04:04:26,367 adding 'omicverse/external/PROST/layers.py' 2026-04-05T04:04:26,369 adding 'omicverse/external/PROST/model.py' 2026-04-05T04:04:26,370 adding 'omicverse/external/PROST/plot.py' 2026-04-05T04:04:26,374 adding 'omicverse/external/PROST/utils.py' 2026-04-05T04:04:26,376 adding 'omicverse/external/PyWGCNA/__init__.py' 2026-04-05T04:04:26,378 adding 'omicverse/external/PyWGCNA/comparison.py' 2026-04-05T04:04:26,379 adding 'omicverse/external/PyWGCNA/geneExp.py' 2026-04-05T04:04:26,381 adding 'omicverse/external/PyWGCNA/utils.py' 2026-04-05T04:04:26,404 adding 'omicverse/external/PyWGCNA/wgcna.py' 2026-04-05T04:04:26,407 adding 'omicverse/external/SEACells/__init__.py' 2026-04-05T04:04:26,409 adding 'omicverse/external/SEACells/accessibility.py' 2026-04-05T04:04:26,410 adding 'omicverse/external/SEACells/build_graph.py' 2026-04-05T04:04:26,412 adding 'omicverse/external/SEACells/core.py' 2026-04-05T04:04:26,415 adding 'omicverse/external/SEACells/cpu.py' 2026-04-05T04:04:26,418 adding 'omicverse/external/SEACells/cpu_dense.py' 2026-04-05T04:04:26,420 adding 'omicverse/external/SEACells/domainadapt.py' 2026-04-05T04:04:26,421 adding 'omicverse/external/SEACells/evaluate.py' 2026-04-05T04:04:26,423 adding 'omicverse/external/SEACells/genescores.py' 2026-04-05T04:04:26,426 adding 'omicverse/external/SEACells/gpu.py' 2026-04-05T04:04:26,428 adding 'omicverse/external/SEACells/plot.py' 2026-04-05T04:04:26,429 adding 'omicverse/external/SEACells/preprocess.py' 2026-04-05T04:04:26,431 adding 'omicverse/external/SEACells/tfactivity.py' 2026-04-05T04:04:26,432 adding 'omicverse/external/SEACells/utils.py' 2026-04-05T04:04:26,434 adding 'omicverse/external/SEACells/version.py' 2026-04-05T04:04:26,435 adding 'omicverse/external/STAGATE_pyG/STAGATE.py' 2026-04-05T04:04:26,437 adding 'omicverse/external/STAGATE_pyG/Train_STAGATE.py' 2026-04-05T04:04:26,438 adding 'omicverse/external/STAGATE_pyG/__init__.py' 2026-04-05T04:04:26,440 adding 'omicverse/external/STAGATE_pyG/gat_conv.py' 2026-04-05T04:04:26,442 adding 'omicverse/external/STAGATE_pyG/utils.py' 2026-04-05T04:04:26,444 adding 'omicverse/external/STAligner/STALIGNER.py' 2026-04-05T04:04:26,446 adding 'omicverse/external/STAligner/ST_utils.py' 2026-04-05T04:04:26,448 adding 'omicverse/external/STAligner/gat_conv.py' 2026-04-05T04:04:26,449 adding 'omicverse/external/STAligner/mnn_utils.py' 2026-04-05T04:04:26,452 adding 'omicverse/external/STAligner/train_STAligner.py' 2026-04-05T04:04:26,453 adding 'omicverse/external/STT/__init__.py' 2026-04-05T04:04:26,455 adding 'omicverse/external/STT/pl/__init__.py' 2026-04-05T04:04:26,458 adding 'omicverse/external/STT/pl/_networks.py' 2026-04-05T04:04:26,460 adding 'omicverse/external/STT/pl/_plot_tensor.py' 2026-04-05T04:04:26,462 adding 'omicverse/external/STT/pl/_plot_utils.py' 2026-04-05T04:04:26,464 adding 'omicverse/external/STT/tl/__init__.py' 2026-04-05T04:04:26,466 adding 'omicverse/external/STT/tl/_construct_landscape.py' 2026-04-05T04:04:26,468 adding 'omicverse/external/STT/tl/_dynamical_analysis.py' 2026-04-05T04:04:26,469 adding 'omicverse/external/STT/tl/_pathway_analysis.py' 2026-04-05T04:04:26,471 adding 'omicverse/external/SpatialDE/__init__.py' 2026-04-05T04:04:26,473 adding 'omicverse/external/SpatialDE/aeh.py' 2026-04-05T04:04:26,474 adding 'omicverse/external/SpatialDE/aha.py' 2026-04-05T04:04:26,476 adding 'omicverse/external/SpatialDE/anndata.py' 2026-04-05T04:04:26,478 adding 'omicverse/external/SpatialDE/base.py' 2026-04-05T04:04:26,480 adding 'omicverse/external/SpatialDE/plot.py' 2026-04-05T04:04:26,481 adding 'omicverse/external/SpatialDE/util.py' 2026-04-05T04:04:26,483 adding 'omicverse/external/VIA/__init__.py' 2026-04-05T04:04:26,505 adding 'omicverse/external/VIA/core.py' 2026-04-05T04:04:26,508 adding 'omicverse/external/VIA/datasets_via.py' 2026-04-05T04:04:26,533 adding 'omicverse/external/VIA/plotting_via.py' 2026-04-05T04:04:26,559 adding 'omicverse/external/VIA/plotting_via_ov.py' 2026-04-05T04:04:26,574 adding 'omicverse/external/VIA/utils_via.py' 2026-04-05T04:04:26,576 adding 'omicverse/external/VIA/windmap.py' 2026-04-05T04:04:26,578 adding 'omicverse/external/bin2cell/__init__.py' 2026-04-05T04:04:26,591 adding 'omicverse/external/bin2cell/bin2cell.py' 2026-04-05T04:04:26,593 adding 'omicverse/external/bulk2single/__init__.py' 2026-04-05T04:04:26,596 adding 'omicverse/external/bulk2single/OmicsTweezer/deconvolution.py' 2026-04-05T04:04:26,598 adding 'omicverse/external/bulk2single/OmicsTweezer/model.py' 2026-04-05T04:04:26,599 adding 'omicverse/external/bulk2single/OmicsTweezer/simulation.py' 2026-04-05T04:04:26,601 adding 'omicverse/external/bulk2single/OmicsTweezer/train_predict.py' 2026-04-05T04:04:26,602 adding 'omicverse/external/bulk2single/OmicsTweezer/utils.py' 2026-04-05T04:04:26,604 adding 'omicverse/external/bulk2single/pybayesprism/__init__.py' 2026-04-05T04:04:26,606 adding 'omicverse/external/bulk2single/pybayesprism/compare.py' 2026-04-05T04:04:26,607 adding 'omicverse/external/bulk2single/pybayesprism/extract.py' 2026-04-05T04:04:26,609 adding 'omicverse/external/bulk2single/pybayesprism/gibbs.py' 2026-04-05T04:04:26,611 adding 'omicverse/external/bulk2single/pybayesprism/joint_post.py' 2026-04-05T04:04:26,613 adding 'omicverse/external/bulk2single/pybayesprism/main.py' 2026-04-05T04:04:26,614 adding 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2026-04-05T04:04:28,905 adding 'omicverse/external/nocd/data.py' 2026-04-05T04:04:28,907 adding 'omicverse/external/nocd/generate.py' 2026-04-05T04:04:28,908 adding 'omicverse/external/nocd/sampler.py' 2026-04-05T04:04:28,909 adding 'omicverse/external/nocd/train.py' 2026-04-05T04:04:28,911 adding 'omicverse/external/nocd/utils.py' 2026-04-05T04:04:28,913 adding 'omicverse/external/nocd/metrics/__init__.py' 2026-04-05T04:04:28,914 adding 'omicverse/external/nocd/metrics/supervised.py' 2026-04-05T04:04:28,916 adding 'omicverse/external/nocd/metrics/unsupervised.py' 2026-04-05T04:04:28,917 adding 'omicverse/external/nocd/nn/__init__.py' 2026-04-05T04:04:28,918 adding 'omicverse/external/nocd/nn/decoder.py' 2026-04-05T04:04:28,920 adding 'omicverse/external/nocd/nn/gcn.py' 2026-04-05T04:04:28,921 adding 'omicverse/external/nocd/nn/imrpoved_gcn.py' 2026-04-05T04:04:28,923 adding 'omicverse/external/palantir/__init__.py' 2026-04-05T04:04:28,924 adding 'omicverse/external/palantir/config.py' 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